BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0590c.10
         (993 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g15410 putative retroelement pol polyprotein                       368  e-102
At1g20390 hypothetical protein                                        367  e-101
At2g15100 putative retroelement pol polyprotein                       289  6e-78
At2g14400 putative retroelement pol polyprotein                       278  1e-74
At3g31530 hypothetical protein                                        234  1e-61
At2g13230 pseudogene                                                  231  2e-60
At2g11940 putative retroelement gag/pol polyprotein                   191  1e-48
At1g37200 hypothetical protein                                        185  1e-46
At2g13060 pseudogene                                                  181  1e-45
At2g06320 putative retroelement pol polyprotein                       172  6e-43
At1g36830 hypothetical protein                                        169  5e-42
At1g37060 Athila retroelment ORF 1, putative                          159  6e-39
At4g07850 putative polyprotein                                        119  6e-27
At3g31970 hypothetical protein                                        117  4e-26
At2g07660 putative retroelement pol polyprotein                       115  1e-25
At2g10780 pseudogene                                                  109  7e-24
At2g04670 putative retroelement pol polyprotein                       103  4e-22
At4g07610                                                             103  6e-22
At4g07830 putative reverse transcriptase                              102  1e-21
At1g35370 hypothetical protein                                        102  1e-21

>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  368 bits (945), Expect = e-102
 Identities = 220/596 (36%), Positives = 312/596 (51%), Gaps = 71/596 (11%)

Query: 468  ATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRYL 527
            A+NN+AEYEALIAGL+LA  ++++ +    DSQLV +Q  G ++ K+  +  YL+ VR L
Sbjct: 1192 ASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVREL 1251

Query: 528  MTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSV-----------IQETLAYPSI- 575
               F+   +  +PR++N  ADALA LAST  P   + +           IQ T+  PS  
Sbjct: 1252 SYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPSEY 1311

Query: 576  -----------------------------EGELMACVSRGRT------------------ 588
                                          G L+     G++                  
Sbjct: 1312 TVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSDSP 1371

Query: 589  ----WMDPIISILEGDPAEVEQCTKEQQREAS-HYTLIDGHLYRRGFSTPLLKCVPPEKY 643
                W++ I S +       ++    + R  S  YTL   HL R   +  LL C+  E+ 
Sbjct: 1372 ASTNWIEEIRSYIADRIVPKDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDDEEA 1431

Query: 644  EAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPP 703
            + +M E+HEG   +H GGR+LA K+ + G YWPT+  DC  FV +C++CQ  A     P 
Sbjct: 1432 QQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIPS 1491

Query: 704  KELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNF 763
            + L T   P+PF  W +D++ PFP +R Q K+ILV  DYFTKW EAE  A+I S ++ NF
Sbjct: 1492 EVLQTAMPPYPFMRWAMDIIRPFPASR-QKKYILVMTDYFTKWFEAESYARIQSKEVQNF 1550

Query: 764  YWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVI 823
             WK I+C  G+P  IV+DNGTQF+S Q   FC +  I++  ++  +PQ NGQ E+ N+ I
Sbjct: 1551 VWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTI 1610

Query: 824  LRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWRT 883
            L GL++RL E KGAW DEL  VLWSY TT + +T  TPF +TYG++A+ P E    T R 
Sbjct: 1611 LDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRR 1670

Query: 884  RPGFEEE--NQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLK 941
                 +   N   +   LD L E RD+A +R    +Q  A  +N +V+ R    GDLVL+
Sbjct: 1671 SMLINDPTLNDQMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLR 1730

Query: 942  W----RSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 993
                        KL  +WEGPY I KV+  G Y L  +DG  +PRS+N  +L+ +Y
Sbjct: 1731 KVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLKRYY 1786


>At1g20390 hypothetical protein
          Length = 1791

 Score =  367 bits (943), Expect = e-101
 Identities = 210/545 (38%), Positives = 302/545 (54%), Gaps = 20/545 (3%)

Query: 468  ATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRYL 527
            ATNN AEYE LIAGL+LA  ++I ++   TDSQL+  Q+ G ++ K+  +  YL+ V+ +
Sbjct: 1247 ATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLM 1306

Query: 528  MTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEG----ELMACV 583
               F+   +  +PR +N  ADALA LA T      + +  E++  PSI+     E++  +
Sbjct: 1307 TKDFENFKLSKIPRGDNAPADALAALALTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTI 1366

Query: 584  SRGRT--------WMDPIISILEGDPAEVEQCTKEQQR-EASHYTLIDGHLYRRGFSTPL 634
                         W   I   L       ++ T  + R +A+ YTL+  HL +      +
Sbjct: 1367 RSSNAPDPADPTDWRVEIRDYLSDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAM 1426

Query: 635  LKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQV 694
            L C+   +   IM E HEG   +H GGR+LA K+ + GFYWPT+  DC  F  +C++CQ 
Sbjct: 1427 LNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQR 1486

Query: 695  FADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAK 754
             A     P + L    AP+PF  W +D+VGP P +R Q +FILV  DYFTKW+EAE  A 
Sbjct: 1487 HAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMPASR-QKRFILVMTDYFTKWVEAESYAT 1545

Query: 755  ITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNG 814
            I +  + NF WK I+CR G+P  I++DNG+QF S     FC    I++  ++  +PQ NG
Sbjct: 1546 IRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNG 1605

Query: 815  QVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPV 874
            Q E+ N+ IL GL++RL E KGAW DEL  VLWSY TT +S T +TPF   YG++AM P 
Sbjct: 1606 QAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPA 1665

Query: 875  EIDNFTWRTRPGFE--EENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRE 932
            E+   + R     +  E N   M   LD L E R+ A  R    +   A  +N +V  R 
Sbjct: 1666 EVGYSSLRRSMMVKNPELNDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRH 1725

Query: 933  MQVGDLVLK--WRSGAPGN--KLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLS 988
              VGDLVL+  + + A  N  KL  NWEG Y++ K++  G Y L  + G  +PR++N + 
Sbjct: 1726 FDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMH 1785

Query: 989  LRYFY 993
            L+ +Y
Sbjct: 1786 LKRYY 1790


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  289 bits (739), Expect = 6e-78
 Identities = 188/569 (33%), Positives = 282/569 (49%), Gaps = 42/569 (7%)

Query: 453  IKEIVKASGAMVAIKATNNQAEYEA----LIAGLKLAREVKIRSLLIR-TDSQLVENQVK 507
            IK  V++     A  A     EYEA    + A L L REV  R      T     EN   
Sbjct: 774  IKTWVRSRNLSDAPTANRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAA 833

Query: 508  GTFQVKDPNLIKYLERVRYLMTLFQEVV----VEYVP-RAENQRADALAKLASTRKPGNN 562
                         L RV  + T+ Q  +    + +V  RA  +R DA +      + G++
Sbjct: 834  NALAALASTFEVTLPRVIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDD 893

Query: 563  KSVIQETLAYPSIEGELMACVSR-----------GRTWMDPIIS-ILEGDPAEVEQCTKE 610
            + +         +E + +                G  W +PI   IL G     +   ++
Sbjct: 894  EEISDAVHPTEIVENQSLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLPAEKWAARK 953

Query: 611  QQREASHYTLIDGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLR 670
             +   + + + +  LYRR FS P   C+  E+   +M EVH+G C +H GGRSLA KV +
Sbjct: 954  LKATCARFCIANDILYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRK 1013

Query: 671  AGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTAR 730
             G+YWPTL  DC  + ++C++CQ  A L   P + L T+SAP+PF  W +D+VGP   + 
Sbjct: 1014 YGYYWPTLVADCEAYARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS- 1072

Query: 731  AQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQ 790
                         T+ +EA   + IT  ++ NF WK I+CR G+P  IV+DNG+QF S Q
Sbjct: 1073 -------------TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQ 1119

Query: 791  TREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYN 850
               FC+E  I++  ++  +PQ NGQ E+ N+ I+  L+++L   KGAW  EL  VLW+  
Sbjct: 1120 FEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVR 1179

Query: 851  TTEQSTTRETPFRMTYGVDAMLPVEIDNFTWR--TRPGFEEENQANMAVELDLLSETRDE 908
            TT +  T ETPF + YG++A++P EI   + R    P  E EN   +   +D + E R+ 
Sbjct: 1180 TTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQNETENNEMIIDVIDTIDERRNR 1239

Query: 909  AHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKW----RSGAPGNKLTPNWEGPYRIIKV 964
            A  R        A  +NS VR R  +VG LVL+     ++     KL  +WEGPY+I  V
Sbjct: 1240 ALARMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEGPYKITHV 1299

Query: 965  LGNGAYHLEELDGRRLPRSFNGLSLRYFY 993
            + NG Y L  ++G+ + R++N + L+ FY
Sbjct: 1300 VRNGVYRLINMEGKTVRRAWNSMHLKRFY 1328


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  278 bits (711), Expect = 1e-74
 Identities = 178/548 (32%), Positives = 274/548 (49%), Gaps = 94/548 (17%)

Query: 490  IRSLLIRTDS-------QLVENQVKGTFQVKDPNLIKYLERVRYLMTLFQEVVVEYVPRA 542
            +  +LIR D         ++ NQ  G ++ KD  +  YL  V+ L   F++  +  +PR 
Sbjct: 772  VSGVLIREDRGEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRG 831

Query: 543  ENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMACV---------SRGRTWMD-- 591
            +N  ADALA LAST  P  N  +  E ++  SI+ E  A V          RG T ++  
Sbjct: 832  QNTTADALAALASTSDPEVNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELP 891

Query: 592  ------------PIISILEGDPAE-VEQCTKEQQREASHYTLID---------------G 623
                        P  ++ E    E +E+   + + EA     +D                
Sbjct: 892  PVKRRKSKEATVPKPAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALN 951

Query: 624  HLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCM 683
             LYRRG S P L  +     E +MSEVHEG+C SH  GR++A K+ +  +YWPT+  DC+
Sbjct: 952  SLYRRGVSDPYLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCV 1011

Query: 684  DFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYF 743
             + ++CK CQ+ A L   P +   ++SAP+PF  W +D++GP   +   ++++LV  DYF
Sbjct: 1012 KYAQRCKRCQLHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLHRSTRGVQYLLVLTDYF 1071

Query: 744  TKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMR 803
            +KWIEAE +       ++N+                                   GI++ 
Sbjct: 1072 SKWIEAEAI-------LLNW-----------------------------------GIKVS 1089

Query: 804  FASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFR 863
            ++++ +PQ NGQ E+AN+ IL  L++RL   KG W DEL  VLW+Y TT + +T ETPF 
Sbjct: 1090 YSTLRYPQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFS 1149

Query: 864  MTYGVDAMLPVEID--NFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVA 921
            + YG+ A++P E++         P  E+EN A +   LD ++E RD+A I+    +   A
Sbjct: 1150 LVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAA 1209

Query: 922  AKFNSRVRVREMQVGDLVLKW----RSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDG 977
              +NS+V+ R   VGD VLK     +      KL  NWEGPY + +V+ NG Y L++L+ 
Sbjct: 1210 RYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLED 1269

Query: 978  RRLPRSFN 985
            R + R +N
Sbjct: 1270 RPVQRPWN 1277


>At3g31530 hypothetical protein
          Length = 831

 Score =  234 bits (598), Expect = 1e-61
 Identities = 158/454 (34%), Positives = 225/454 (48%), Gaps = 77/454 (16%)

Query: 467 KATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRY 526
           +ATNN AEYEAL+AGL LA  +KI       DSQL+ NQ  G +  +D  +  YL  V+ 
Sbjct: 439 EATNNVAEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQN 498

Query: 527 LMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE-----GELMA 581
           L   F E  +  +PR EN  ADALA LAST      + +  E +  PSIE       L  
Sbjct: 499 LAKNFDEFELTRIPRGENTSADALAALASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPI 558

Query: 582 CVSRGRT--------WMDPIIS-ILEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFST 632
            +S  +         WM+PIIS I EG     +   ++ + +A+ + L+D  LY+   S 
Sbjct: 559 QISADQDDPDDCNSEWMEPIISYISEGKLPSDKWKARKLKAQAARFVLVDTKLYKWRLSG 618

Query: 633 PLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKEC 692
           PL+ CV  E    IM E+H G   SH                 PT+ +            
Sbjct: 619 PLMTCVEAEAICKIMKEIHSG---SHA----------------PTIHQ------------ 647

Query: 693 QVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL 752
                    P + L ++++P+PF  W +D++GP   ++ Q K +LV  DYF+KWIEAE  
Sbjct: 648 ---------PAELLSSIASPYPFMRWSMDIIGPMHPSK-QKKLVLVLTDYFSKWIEAESY 697

Query: 753 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
           A I  A++ NF  K I+CR GIP  IV+DNG+QF S++ + FC + GI++  ++  +PQ 
Sbjct: 698 ASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQG 757

Query: 813 NGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAML 872
           NGQ E+AN                    EL  VLW + TT +  TRETPF   YG + ++
Sbjct: 758 NGQAEAAN--------------------ELEGVLWLHRTTPRRATRETPFASIYGTECVI 797

Query: 873 PVE--IDNFTWRTRPGFEEENQANMAVELDLLSE 904
           P E  + +      P  + +N      ELDL+ E
Sbjct: 798 PAEMIVPSLRRSLSPENDPDNTQTPLDELDLIDE 831


>At2g13230 pseudogene
          Length = 353

 Score =  231 bits (588), Expect = 2e-60
 Identities = 128/361 (35%), Positives = 200/361 (54%), Gaps = 34/361 (9%)

Query: 520 YLERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE--- 576
           YL  V+     F E  +  +PR EN  ADALA LAST      + +  E +  PSIE   
Sbjct: 4   YLALVQDHAKQFHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPSIELDK 63

Query: 577 -------------------GELMACVSRGRTWMDPIISILEGDPAEVEQC-TKEQQREAS 616
                                 + C S    W++PI + +      +++   ++ + EA+
Sbjct: 64  VEHAFPIQVVAGYEDASDNSPSLGCDSE---WIEPIRNFISKRKVRLDKWEARKLKAEAA 120

Query: 617 HYTLIDGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWP 676
            + L++  L++   S PL+ CV  E    +M EVH G C ++ GGR+LA K+ R G++WP
Sbjct: 121 RFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKRLGYFWP 180

Query: 677 TLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFI 736
           T+ KDC       ++CQ  A     P + L ++++P+P   W +D++GP   ++ Q K +
Sbjct: 181 TMIKDC-------EKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMHASK-QKKLV 232

Query: 737 LVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCK 796
           LV  DYF+K  EAE  A I  A++ +F WK I+CR G+P  IV+DNG+QF S++ + FC 
Sbjct: 233 LVLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFISTRFQGFCD 292

Query: 797 EMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQST 856
           + GI++  ++  + Q NGQ ++AN+ IL GL++RL   KG+W+DEL  VLWS+ TT +  
Sbjct: 293 KWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSHRTTPRRA 352

Query: 857 T 857
           T
Sbjct: 353 T 353


>At2g11940 putative retroelement gag/pol polyprotein
          Length = 1212

 Score =  191 bits (486), Expect = 1e-48
 Identities = 149/558 (26%), Positives = 235/558 (41%), Gaps = 130/558 (23%)

Query: 490  IRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRYLMTLFQEVVVEYVPRAENQRADA 549
            +   LI        +   G ++ KD  +  YL+ +R L   F++  +  VPRAEN  ADA
Sbjct: 730  LADFLIELPLATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADA 789

Query: 550  LAKLASTRKPGNNKSVIQETLAYPSIEGELMACVSR------------------------ 585
            LA LAST +    + +  ET+A P+I  E +  V+R                        
Sbjct: 790  LAALASTPEITVRRIISVETIAQPNIRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEI 849

Query: 586  ---------------------GRTWMDPIISILEGDPAEVEQC-TKEQQREASHYTLIDG 623
                                 G  W +PI + +       ++   ++ +   + + L D 
Sbjct: 850  PEAVPLVADEDSTEYNLPHDWGADWREPIRNYIFNGVLPTDKWEARKLKATCARFCLADD 909

Query: 624  HLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCM 683
             LYRR  S P   C+  E+   ++ E+H+G C +H GGRSLA K+ + G++WPT+  DC 
Sbjct: 910  ILYRRIISAPDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADCE 969

Query: 684  DFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYF 743
             +  + +    F               +P PF  W +D+VGP   +   ++F+L+     
Sbjct: 970  AYAHRSRRTFHFG-------------ISPLPFMKWSMDIVGPLHVSTRGVRFLLL----- 1011

Query: 744  TKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMR 803
             +W+EA   + IT  ++ +F WK I+CR G+P  IV+DNG QF S Q + F  E  I++ 
Sbjct: 1012 -EWVEAAAYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIRLN 1070

Query: 804  FASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFR 863
             ++  +PQ  G VE+                                             
Sbjct: 1071 RSTPRYPQ--GNVEA--------------------------------------------- 1083

Query: 864  MTYGVDAMLPVEIDNFTWRTR----PGFEEENQANMAVELDLLSETRDEAHIRETAMKQR 919
                   ++P EI     RTR    P  E  N   M   +D + E R+ A +R       
Sbjct: 1084 -------VIPAEIK--VPRTRRIRNPKNEAANNKMMVDVIDTIDERRNRALVRMQNYHNA 1134

Query: 920  VAAKFNSRVRVREMQVGDLVLKW----RSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEEL 975
             A  +NS VR R   VG LVL+      +     KL  +WEGPY+I  ++ NG   L  +
Sbjct: 1135 AAQYYNSNVRSRSFDVGTLVLRRIHQNTAEKGAGKLGISWEGPYKITHIVRNGDC-LINM 1193

Query: 976  DGRRLPRSFNGLSLRYFY 993
            +G+ + R++N   L+ FY
Sbjct: 1194 EGKTVRRAWNAAHLKRFY 1211


>At1g37200 hypothetical protein
          Length = 1564

 Score =  185 bits (470), Expect = 1e-46
 Identities = 115/383 (30%), Positives = 186/383 (48%), Gaps = 62/383 (16%)

Query: 464  VAIKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLER 523
            +   A+NN++EYEALI G+KLA+ ++IR +   +DSQLV +Q  G ++ KD  +  YLE 
Sbjct: 1074 LGFNASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLEL 1133

Query: 524  VRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE------- 576
            V+ L   F+   +  +PR EN   DALA LAST  P   + +  E + +PSI+       
Sbjct: 1134 VKTLTQQFESFELTRIPRGENTSTDALAALASTLDPFVKRIIPVEGIEHPSIDLTVKHAG 1193

Query: 577  --------------------GELMACVSRGRT----------------------WMDPII 594
                                  L A    G                        W  PII
Sbjct: 1194 METSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPII 1253

Query: 595  SILEGDPAEVEQC-TKEQQREASHYTLIDGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEG 653
              +E      ++  T++ + +++ Y +++G L +R  + P + C   ++ + +M  +HEG
Sbjct: 1254 DYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEG 1313

Query: 654  VCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPW 713
             C SH  GR+L C +L           DC+    +C +CQ  A     PP+E+ ++S+P+
Sbjct: 1314 QCGSHYSGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPY 1363

Query: 714  PFAMWGVDLVGPFPTA--RAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCR 771
            PF  W +D+V P   +  + ++K +LV  DY TKWIE +   ++T  ++  F  + IV R
Sbjct: 1364 PFMKWSMDVVRPMEASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYR 1423

Query: 772  FGIPRAIVSDNGTQFSSSQTREF 794
             GIP  IV+DNG      +++ F
Sbjct: 1424 HGIPYEIVTDNGLTSPREKSKHF 1446



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 900  DLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKW----RSGAPGNKLTPNW 955
            D + E RD A I+    +Q     +NS +++R  +VG+LVL+            KL  NW
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524

Query: 956  EGPYRIIKVLGNGAYHLEEL-DGRRLPRSFNGLSLRYFY 993
            EGPYRI +V+ +G Y L ++ +G    R +N + L+ ++
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKYH 1563


>At2g13060 pseudogene
          Length = 930

 Score =  181 bits (460), Expect = 1e-45
 Identities = 116/384 (30%), Positives = 183/384 (47%), Gaps = 17/384 (4%)

Query: 567 QETLAYPSIEGELMACVSRGRTWMDPIISILEGDPAEVEQCT----KEQQREASHYTLID 622
           + T  + S E   +  V +   W   I++ L  D  E +  T    K   RE   Y   +
Sbjct: 116 ESTRKWSSTENCAVTAVEKDYPWYADIVNYLAAD-VEPDNFTDYNKKRFLREIRRYQWDE 174

Query: 623 GHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDC 682
            +LY+  +     +C+   +  +I+S  H      H        KVL+A F+WPT+ +D 
Sbjct: 175 PYLYKHSYDGIYRRCIAATEVPSILSHCHSSSYGGHFATFKTVSKVLQADFWWPTMFRDT 234

Query: 683 MDFVKQCKECQVFADLSKA---PPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVA 739
             F+ QC  CQ    +SK    PP   + +     F  WG+D +GPFP +   + +ILV 
Sbjct: 235 QKFISQCDPCQRRGKISKRNEMPPNFRLEVEV---FDRWGIDFMGPFPPSNKNL-YILVD 290

Query: 740 VDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMG 799
           VDY +KW+EA    K  SA ++  +   I  RFG+PR ++SD    F +    +   + G
Sbjct: 291 VDYVSKWVEAIASLKNDSAVVMKLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYG 350

Query: 800 IQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRE 859
           +Q R A+  HPQT+GQVE +NR I   L + + +AK  W  +L   LW+Y T  ++    
Sbjct: 351 VQHRVATPYHPQTSGQVEVSNRQIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGT 410

Query: 860 TPFRMTYGVDAMLPVEIDN-FTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQ 918
           TPF + YG    LPVE+++   W  +    +   A  + ELD   E R  A+      K+
Sbjct: 411 TPFHLLYGKACHLPVELEHKAAWAVKMMNFDIKSAGES-ELD---EIRIHAYDNSKLYKE 466

Query: 919 RVAAKFNSRVRVREMQVGDLVLKW 942
           R  A  + ++  R  +  D +L++
Sbjct: 467 RTKAYHDKKILTRTFEPNDQILRF 490


>At2g06320 putative retroelement pol polyprotein
          Length = 466

 Score =  172 bits (437), Expect = 6e-43
 Identities = 117/376 (31%), Positives = 186/376 (49%), Gaps = 18/376 (4%)

Query: 613 REASHYTLIDGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAG 672
           R+  HY   + +LY           V  ++ E I+   H+     H        K+L+AG
Sbjct: 66  RDIHHYYWDEPYLYTLCKDKIYRSYVSEDEVEGILLHCHDSAYGGHFATFKTVSKILQAG 125

Query: 673 FYWPTLRKDCMDFVKQCKECQVFADLSKA---PPKELVTMSAPWPFAMWGVDLVGPFPTA 729
           F+WPT+ KD  +FV +C  CQ   ++S+    P   ++ +     F +WG+D +GPFP++
Sbjct: 126 FWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVDI---FDVWGIDFMGPFPSS 182

Query: 730 RAQMKFILVAVDYFTKWIEAEPLAKITS-AKIVNFYWKRIVC-RFGIPRAIVSDNGTQFS 787
               K+ILV VDY +KW+EA  +A  T+ AK+V   +K I+  RFG+   ++SD G  F 
Sbjct: 183 YGN-KYILVVVDYVSKWVEA--IASPTNDAKVVLKLFKTIIFPRFGVSWVVISDGGKHFI 239

Query: 788 SSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLW 847
           +       K+ G++ + A+  HPQT+GQVE +NR I   L + +   +  W  +L   LW
Sbjct: 240 NKVFENLLKKHGVKHKVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKLDDALW 299

Query: 848 SYNTTEQSTTRETPFRMTYGVDAMLPVEID-NFTWRTR-PGFE-EENQANMAVELDLLSE 904
           +Y T  ++    TPF +       L VE++    W  +   F+ +  +    ++L  L E
Sbjct: 300 AYKTAFKTPIGTTPFNLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKRLIQLSELDE 359

Query: 905 TRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSGA---PGNKLTPNWEGPYRI 961
            R EA+      K+R     + ++  ++ QVGD VL + S     PG KL   W GP+ I
Sbjct: 360 IRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLLFNSRLKIFPG-KLKSRWSGPFCI 418

Query: 962 IKVLGNGAYHLEELDG 977
            +V   GA  L    G
Sbjct: 419 TEVRPYGAVTLAGKSG 434


>At1g36830 hypothetical protein
          Length = 243

 Score =  169 bits (429), Expect = 5e-42
 Identities = 82/226 (36%), Positives = 137/226 (60%), Gaps = 4/226 (1%)

Query: 720 VDLVGPFPTA--RAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRA 777
           +D+VGP   +  + ++K +LV  DY TKWIEA+   ++T  ++ +F W+ IVC+ GIP  
Sbjct: 1   MDVVGPMEASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIPYE 60

Query: 778 IVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGA 837
           I++DNGT  +S + + FC +  I++  ++  +PQ NGQ E+AN+ IL  +++ L   K  
Sbjct: 61  IITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKKSM 120

Query: 838 WLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVE--IDNFTWRTRPGFEEENQANM 895
           W D L  VLW+Y TT + +T+ETPF + YG++A++P+   I +          + N   +
Sbjct: 121 WSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMNTQML 180

Query: 896 AVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLK 941
              +D + E RD+A IR    +Q V   +NS +++R  +VG+LVL+
Sbjct: 181 RDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLR 226


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  159 bits (403), Expect = 6e-39
 Identities = 110/368 (29%), Positives = 179/368 (47%), Gaps = 48/368 (13%)

Query: 618  YTLIDGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPT 677
            YTL    +YR         CV  ++ E I+   H      H        K+L+AGF+WP+
Sbjct: 1375 YTLCKDKIYRT--------CVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQAGFWWPS 1426

Query: 678  LRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFIL 737
            + KD  +F+ +C   +                     F +WG+D +GPFP++    K+IL
Sbjct: 1427 MFKDAQEFISKCDSFE--------------------NFDVWGIDFMGPFPSSYGN-KYIL 1465

Query: 738  VAVDYFTKWIEAEPLAKITS-AKIVNFYWKRIVC-RFGIPRAIVSDNGTQFSSSQTREFC 795
            VA+DY +KW+EA  +A  T+ A++V   +K I+  RFG+PR ++SD G  F +       
Sbjct: 1466 VAIDYVSKWVEA--IASHTNDARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENLL 1523

Query: 796  KEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQS 855
            K+ G++ +        T+GQVE +NR I   L + +   +  W  +L   LW+Y T  ++
Sbjct: 1524 KKHGVKHK--------TSGQVEISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKT 1575

Query: 856  TTRETPFRMTYGVDAMLPVEID-NFTWRTR-PGFE-EENQANMAVELDLLSETRDEAHIR 912
                TPF + YG    LPVE++    W  +   F+ +  +    ++L+ L++ R EA+  
Sbjct: 1576 PIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYES 1635

Query: 913  ETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSGA---PGNKLTPNWEGPYRIIKVLGNGA 969
                K+R  +  + ++  R+ +VGD VL + S     PG KL   W GP+ +  V   GA
Sbjct: 1636 SKIYKERTKSFHDKKIVSRDFKVGDQVLLFNSRLRLFPG-KLKSRWSGPFSVTAVRPYGA 1694

Query: 970  YHLEELDG 977
              L   +G
Sbjct: 1695 ITLAGKNG 1702


>At4g07850 putative polyprotein
          Length = 1138

 Score =  119 bits (299), Expect = 6e-27
 Identities = 92/339 (27%), Positives = 151/339 (44%), Gaps = 35/339 (10%)

Query: 569 TLAYPSIEGELMACVSRGRTWMD---PIISILEGDPAEVEQCTKEQQREASHYTLIDGH- 624
           TL YP+ + EL A V   +TW     P   ++  D   ++    +Q+    H   ++   
Sbjct: 658 TLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIE 717

Query: 625 ------LYRRGFSTPLLK----------------CVPPEKY-EAIMSEVHEGVCASHIGG 661
                  Y++G    +                  C+P     E  + E H G    H G 
Sbjct: 718 TFPYVIKYKKGKDNVVADALSRRHEGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGV 777

Query: 662 RSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWG-- 719
            S   KV++  F+WP +++D     ++C  C+     +K+ P  L T   P P   W   
Sbjct: 778 -SKTLKVMQDHFHWPHMKRDVERMCERCTTCKQAK--AKSQPHGLCT-PLPIPLHPWNDI 833

Query: 720 -VDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAK-IVNFYWKRIVCRFGIPRA 777
            +D V   P  R     I V VD F+K     P  K   A  I N +++ +V   G+P+ 
Sbjct: 834 SMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKT 893

Query: 778 IVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGA 837
           IVSD  T+F S   +    ++G ++ F++  HPQT+GQ E  NR +   LR  + +    
Sbjct: 894 IVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKT 953

Query: 838 WLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEI 876
           W D LP V ++YN +  S T+ +PF++ YG + + P+++
Sbjct: 954 WEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDL 992


>At3g31970 hypothetical protein
          Length = 1329

 Score =  117 bits (292), Expect = 4e-26
 Identities = 102/357 (28%), Positives = 165/357 (45%), Gaps = 28/357 (7%)

Query: 637  CVPPEKY--EAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQV 694
            CVP ++     I+SE H  + + H     +  + L+  + W  +++D  ++V +C  CQ+
Sbjct: 895  CVPKDEELRREILSEAHASMFSIHPRATKMY-RDLKRYYQWVGMKRDVANWVTECDVCQL 953

Query: 695  FADLSKAPPKELVTMSA-PWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLA 753
                 + P   L ++    W +    +D V   P +R +   I V VD  TK      + 
Sbjct: 954  VKAEHQVPGGLLQSLPILEWKWDFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAHFLAIR 1012

Query: 754  KITSAKIV-NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
            K   A ++   Y   IV   G+P +IVSD  ++F+S+  R F  EMG +++ ++  HPQT
Sbjct: 1013 KTDGAVLLAKKYVSEIVELHGVPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQT 1072

Query: 813  NGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAML 872
            +GQ E   + +   LR  + +  G W D L  V ++YN + Q++ R  PF   YG     
Sbjct: 1073 DGQSERTIQTLEDMLRMCVLDRGGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRT 1132

Query: 873  PVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQ---RVAAKFNSRVR 929
            P+      W T+ G      A      D + ET +   + +  MK+   R  +  + R R
Sbjct: 1133 PL-----CW-TQVGERSIYGA------DYVLETTERIRVLKLNMKEAQDRQRSYADKRRR 1180

Query: 930  VREMQVGDLVLKWRSGAPG-------NKLTPNWEGPYRIIKVLGNGAYHLEELDGRR 979
              E +VGD V    +   G        KLTP + GP+RI++ +G  AY LE  D  R
Sbjct: 1181 ELEFEVGDRVYLKMAMLRGPNRSISETKLTPRYMGPFRIVERVGPVAYRLELPDVMR 1237


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  115 bits (288), Expect = 1e-25
 Identities = 108/414 (26%), Positives = 185/414 (44%), Gaps = 29/414 (7%)

Query: 572 YPSIEGELMACVSRGRTWMDPIISILEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFS 631
           YP+ + E+ A V   + W   +I + +    E++  T   + E  + T  +G +   G  
Sbjct: 486 YPTHDLEMAAVVFALKIWRSYLIRLAQERDEEIKGWTLNNKTE--YQTSNNGTIVVNG-- 541

Query: 632 TPLLKCVPPEKY--EAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQC 689
                CVP ++   E I+ E H+   + H G   +  + L+  ++W  +RKD   +V +C
Sbjct: 542 ---RVCVPNDRALKEEILREAHQSKFSIHPGSNKMY-RDLKRYYHWVGMRKDVARWVAKC 597

Query: 690 KECQVFADLSKAPPKELVTMS-APWPFAMWGVDLVGPFPTA-RAQMKFILVAVDYFTKWI 747
             CQ+     + P   L  +  + W +    +D V   PT  +++   + V VD  TK  
Sbjct: 598 PTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSA 657

Query: 748 EAEPLAKITSAKIV-NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFAS 806
               ++    A+I+   Y   I+   GIP +IVSD  T+F+S     F K +G ++  ++
Sbjct: 658 HFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLST 717

Query: 807 VEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTY 866
             HPQT+GQ E   + +   LR  + +  G W   L  + ++YN + Q++   +P+   Y
Sbjct: 718 AYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALY 777

Query: 867 GVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNS 926
           G     P+      W T  G   E +      +D  +E      I+    + R  +  N 
Sbjct: 778 GRACRTPL-----CW-TPVG---ERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANK 828

Query: 927 RVRVREMQVGDLVLKWRSGAPG-------NKLTPNWEGPYRIIKVLGNGAYHLE 973
           R +  E QVGDLV        G        KL+P + GPY++I+ +G  AY L+
Sbjct: 829 RRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 882


>At2g10780 pseudogene
          Length = 1611

 Score =  109 bits (273), Expect = 7e-24
 Identities = 96/349 (27%), Positives = 159/349 (45%), Gaps = 22/349 (6%)

Query: 637  CVPPEKY--EAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQV 694
            CVP ++   E I+ E H+   + H G   +  + L+  ++W  ++KD   +V +C  CQ+
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMY-RDLKRYYHWVGMKKDVARWVAKCPTCQL 1210

Query: 695  FADLSKAPPKELVTMSAP-WPFAMWGVDLVGPFPTA-RAQMKFILVAVDYFTKWIEAEPL 752
                 + P   L  +  P W +    +D V   PT  +++   + V VD  TK      +
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270

Query: 753  AKITSAKIV-NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQ 811
            +    A+I+   Y   IV   GIP +IVSD  T+F+S   + F K +G ++  ++  HPQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330

Query: 812  TNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAM 871
            T+ Q E   + +   LR  + +  G W   L  V ++YN + Q++   +P+   YG    
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390

Query: 872  LPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVR 931
             P+      W T  G   E +      +D  +E      I+    + R  +  N R +  
Sbjct: 1391 TPL-----CW-TPVG---ERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKEL 1441

Query: 932  EMQVGDLVLKWRSGAPG-------NKLTPNWEGPYRIIKVLGNGAYHLE 973
            E QVGDLV        G        KL+P + GPY++I+ +G  AY L+
Sbjct: 1442 EFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 1490


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  103 bits (258), Expect = 4e-22
 Identities = 97/368 (26%), Positives = 158/368 (42%), Gaps = 58/368 (15%)

Query: 637  CVPPEKY--EAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQV 694
            CVP ++     I+SE H  + + H G   +  + L+  + W  +++D  ++V +C  CQ 
Sbjct: 1008 CVPKDEELRREILSEAHASMFSIHPGATKMY-RDLKRYYQWVGMKRDVANWVAECDVCQ- 1065

Query: 695  FADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAK 754
                       LV      P A+W                   V +D  TK      + K
Sbjct: 1066 -----------LVKAEHQVPDAIW-------------------VIMDRLTKSAHFLAIRK 1095

Query: 755  ITSAKIV-NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTN 813
               A ++   Y   IV   G+P +IVSD  ++F+ +  R F  +MG +++ ++  HPQT+
Sbjct: 1096 TDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTD 1155

Query: 814  GQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLP 873
            GQ E   + +   LR  + +  G W D L  V ++YN + Q++    PF   YG     P
Sbjct: 1156 GQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTP 1215

Query: 874  VEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQ---RVAAKFNSRVRV 930
            +       R+  G             D + ET +   + +  MK+   R  +  + R R 
Sbjct: 1216 LRWTQVEERSIYG------------ADYVQETTERIRVLKLNMKEAQARQRSYADKRRRE 1263

Query: 931  REMQVGDLVLKWRSGAPG-------NKLTPNWEGPYRIIKVLGNGAYHLEELD-GRRLPR 982
             E +VGD V    +   G        KL+P + GP+RI++ +G  AY LE  D  R   +
Sbjct: 1264 LEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHK 1323

Query: 983  SFNGLSLR 990
             F+ L LR
Sbjct: 1324 VFHVLMLR 1331


>At4g07610
          Length = 276

 Score =  103 bits (256), Expect = 6e-22
 Identities = 56/165 (33%), Positives = 88/165 (52%), Gaps = 3/165 (1%)

Query: 638 VPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFAD 697
           V  ++ E I+   H      +        K+L+AGF+WPT+ K+  +FV +C  C    +
Sbjct: 76  VSEDEVEGILLHCHCSTYGGNFTTFKTVSKILQAGFWWPTMFKEAQEFVLKCDSCHRKGN 135

Query: 698 LSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITS 757
           +SK        +     F +WG+D +GPFP++    K+ILVAVDY +KWIEA   +    
Sbjct: 136 ISKRNEMPQNPILEVELFDVWGIDFIGPFPSSYGN-KYILVAVDYVSKWIEA-TASPTND 193

Query: 758 AKIVNFYWKRIV-CRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQ 801
           AK+V   +K I+  RFG+PR ++SD G  F +       K+ G++
Sbjct: 194 AKVVLKLFKTIIFSRFGVPRVVISDGGKHFINKVFENLLKKHGVK 238


>At4g07830 putative reverse transcriptase
          Length = 611

 Score =  102 bits (254), Expect = 1e-21
 Identities = 96/356 (26%), Positives = 165/356 (45%), Gaps = 22/356 (6%)

Query: 523 RVRYLMTLFQEVVVE--YVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELM 580
           R+R  M L  +  +E  Y P   N   DAL++      PG +     ETL      G L 
Sbjct: 50  RLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSV----ETLVIEI--GALR 103

Query: 581 AC-VSRGRTWMDPIISILEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLK--- 636
            C V+R    ++   ++ + D     Q  +E+       +  +G  Y+   +  +L    
Sbjct: 104 LCAVAREPLGLE---AVDQTDLLSRVQLAQEKDEGLIAASKAEGFEYQFAANGTILVHGR 160

Query: 637 -CVPPEKY--EAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQ 693
            CVP +K   + I+SE H  + + H G   +  + L+  + W  +++D  ++V++C  CQ
Sbjct: 161 VCVPKDKELRQEILSEAHASMFSIHPGATKMY-RDLKRYYQWVGMKRDVGNWVEECDVCQ 219

Query: 694 VFADLSKAPPKELVTMSAP-WPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL 752
           +     +     L ++  P W +    +D V   P +R +   I V VD  TK      +
Sbjct: 220 LVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAHFLAI 278

Query: 753 AKITSAKIV-NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQ 811
            K   A ++   Y   IV   G+P +IVSD  ++F+S+  R F  EMG +++ ++  HPQ
Sbjct: 279 RKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQ 338

Query: 812 TNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYG 867
           T+GQ E   + +   LR  + + +G W D L  V ++YN + Q++    PF + YG
Sbjct: 339 TDGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYG 394


>At1g35370 hypothetical protein
          Length = 1447

 Score =  102 bits (253), Expect = 1e-21
 Identities = 91/347 (26%), Positives = 158/347 (45%), Gaps = 30/347 (8%)

Query: 636  KCVPPEKYEAIMSEVHEGVCASHIGGRS---LACKVLRAGFYWPTLRKDCMDFVKQCKEC 692
            K V P   E I +++ + +  S +GGRS    + + +++ FYW  + KD   F++ C  C
Sbjct: 1042 KIVVPNDVE-ITNKLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTC 1100

Query: 693  QVFADLSKAPPKELVTMSAPWPFAMW---GVDLVGPFPTARAQMKFILVAVDYFTKWIEA 749
            Q     + A P  L  +  P P  +W    +D +   P +  +   I+V VD  +K    
Sbjct: 1101 QQCKSDNAAYPGLLQPL--PIPDKIWCDVSMDFIEGLPNSGGK-SVIMVVVDRLSKAAHF 1157

Query: 750  EPLAKITSA-KIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVE 808
              LA   SA  +   +   +    G P +IVSD    F+S   +EF K  G+++R +S  
Sbjct: 1158 VALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAY 1217

Query: 809  HPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGV 868
            HPQ++GQ E  NR +   LR         W   LP   + YNT   S+++ TPF + YG 
Sbjct: 1218 HPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYG- 1276

Query: 869  DAMLPVEIDNFTWRTR-----PGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAK 923
                P+ +     +++        +E     + ++  L+   R +  +++ A + R    
Sbjct: 1277 -QAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLM---RAQHRMKQFADQHRTERT 1332

Query: 924  FN----SRVRVREMQVGDLVLKWRSGAPGNKLTPNWEGPYRIIKVLG 966
            F+      V+++  +   +VL+        KL+P + GPY+II+  G
Sbjct: 1333 FDIGDFVYVKLQPYRQQSVVLR-----VNQKLSPKYFGPYKIIEKCG 1374


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.336    0.143    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,295,113
Number of Sequences: 26719
Number of extensions: 801661
Number of successful extensions: 3044
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2802
Number of HSP's gapped (non-prelim): 195
length of query: 993
length of database: 11,318,596
effective HSP length: 109
effective length of query: 884
effective length of database: 8,406,225
effective search space: 7431102900
effective search space used: 7431102900
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 65 (29.6 bits)