BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0588b.6
         (142 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g38650 unknown protein                                             214  9e-57
At1g67250 unknown protein                                             214  2e-56
At1g62920 hypothetical protein                                         57  3e-09
At5g18340 putative protein                                             27  4.8
At5g07980 putative protein                                             27  4.8
At2g23140 hypothetical protein                                         27  4.8
At5g66030 Golgi-localized protein GRIP                                 26  6.2
At1g16480 hypothetical protein                                         26  6.2
At3g56860 unknown protein                                              26  8.1

>At5g38650 unknown protein
          Length = 141

 Score =  214 bits (546), Expect = 9e-57
 Identities = 102/140 (72%), Positives = 120/140 (84%)

Query: 3   EAAKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLYGA 62
           E+ K IAH+IGG++NDALRFGL GVKSDI+ SHPL++A ES  +  E MKR+ + + YGA
Sbjct: 2   ESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYGA 61

Query: 63  AFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPLDM 122
           A PLKMDLDRQILSRFQRP G IPSSMLGLE +TG+LD+FGFEDYL+DPRESET++P+D 
Sbjct: 62  ALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVDF 121

Query: 123 HHGMEVRLGLSKGPVCPSFM 142
           HHGMEVRLGLSKGP  PSFM
Sbjct: 122 HHGMEVRLGLSKGPASPSFM 141


>At1g67250 unknown protein
          Length = 141

 Score =  214 bits (544), Expect = 2e-56
 Identities = 98/140 (70%), Positives = 119/140 (85%)

Query: 3   EAAKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLYGA 62
           E+ K IAH+IGG++NDALRFGL GVKS+I+GSHPL+S+ ES  K  E +KR  + + YG 
Sbjct: 2   ESEKKIAHEIGGVKNDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYGT 61

Query: 63  AFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPLDM 122
           A PLKMD+DRQILSRFQRP G IPSSMLGLE +TG++DDFGFEDYL+DPR+SET +P+D 
Sbjct: 62  ALPLKMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVDF 121

Query: 123 HHGMEVRLGLSKGPVCPSFM 142
           HHGMEVRLG+SKGP+ PSFM
Sbjct: 122 HHGMEVRLGISKGPIYPSFM 141


>At1g62920 hypothetical protein
          Length = 260

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 32/71 (45%), Positives = 38/71 (53%), Gaps = 24/71 (33%)

Query: 63  AFPLKMDLDRQILSRF------------------------QRPSGAIPSSMLGLEAFTGS 98
           A PLKMDLDR IL R+                         RP+G IPS ML LE +TG+
Sbjct: 4   ALPLKMDLDRPILPRYGMLDQYHYEIIPLNSDAYSAIRYENRPTGPIPSLMLDLEVYTGA 63

Query: 99  LDDFGFEDYLS 109
           +DDF FEDYL+
Sbjct: 64  IDDFDFEDYLN 74


>At5g18340 putative protein
          Length = 456

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 10/49 (20%)

Query: 47  INEVMKRQCMVNLYGAAFPLKMDLD----------RQILSRFQRPSGAI 85
           INE++ R C+ N Y    P   D+D            +L R   PS ++
Sbjct: 132 INELITRWCLANKYDRPAPKPSDIDYVTELFTDGIESLLQRISSPSSSV 180


>At5g07980 putative protein
          Length = 1501

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 65  PLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPLDMHH 124
           P++ +  R +L   Q+P+       LGL+      +  G +   S  + SE     D+H 
Sbjct: 84  PMRSEYSRSVLQEPQQPTNGYMHGNLGLQTMPNEANVLGMDVESSRDKLSERGFTPDLHK 143

Query: 125 GMEVRLGLSKGPV 137
            +  R  + + PV
Sbjct: 144 -IPTRFEMGESPV 155


>At2g23140 hypothetical protein
          Length = 924

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 17/38 (44%), Positives = 21/38 (54%), Gaps = 2/38 (5%)

Query: 82  SGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRP 119
           S  I  +  GL+A  GSL+D  FED  +D RE  T  P
Sbjct: 459 SPGISGNGYGLDARRGSLND--FEDRSNDSRELRTDAP 494


>At5g66030 Golgi-localized protein GRIP
          Length = 788

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 14/59 (23%), Positives = 32/59 (53%), Gaps = 4/59 (6%)

Query: 15  IQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLYGAAFPLKMDLDRQ 73
           ++ND LR   +G+K ++     LQ A++  +   ++ + Q  V    A+   ++D+++Q
Sbjct: 49  LENDFLRSQFEGLKDEVAQGRSLQKAEQVEADSAQLKQLQEQV----ASLSREIDVEKQ 103


>At1g16480 hypothetical protein
          Length = 905

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 13/40 (32%), Positives = 20/40 (49%)

Query: 92  LEAFTGSLDDFGFEDYLSDPRESETIRPLDMHHGMEVRLG 131
           + +F  SLD F F + LS   +   +      HG+ V+LG
Sbjct: 524 MRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLG 563


>At3g56860 unknown protein
          Length = 478

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 28  KSDIVGSHPLQSAQESAS---KINEVMKRQCMVNLYGAAFPLKMDLDRQILSRFQRPSGA 84
           K  + G  P+ +A  SA      +E  +++  V+  GA      +LD Q L  F    G 
Sbjct: 217 KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA------ELDPQKLLMFFSKFGE 270

Query: 85  IPSSMLGLEAFTG 97
           I    LGL+ +TG
Sbjct: 271 IEEGPLGLDKYTG 283


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,930,518
Number of Sequences: 26719
Number of extensions: 111271
Number of successful extensions: 238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 9
length of query: 142
length of database: 11,318,596
effective HSP length: 89
effective length of query: 53
effective length of database: 8,940,605
effective search space: 473852065
effective search space used: 473852065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)