BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0588b.3
         (432 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g33340 putative protein                                            318  3e-87
At1g64830 hypothetical protein                                        310  1e-84
At1g31450 hypothetical protein                                        278  3e-75
At2g03200 putative chloroplast nucleoid DNA binding protein           220  1e-57
At2g28030 putative chloroplast nucleoid DNA binding protein           216  1e-56
At2g28010 putative chloroplast nucleoid DNA binding protein           211  6e-55
At2g28040 chloroplast nucleoid DNA binding like protein               206  2e-53
At1g01300 chloroplast nucleoid DNA binding protein like               206  3e-53
At1g25510 unknown protein                                             205  3e-53
At2g28220 putative chloroplast nucleoid DNA binding protein           204  6e-53
At5g33350 putative protein                                            201  6e-52
At3g61820 unknown protein                                             190  1e-48
At3g18490 chloroplast nucleoid DNA-binding protein like               189  3e-48
At3g20015 putative nucleoid chloroplast DNA-binding protein           186  3e-47
At5g10760 nucleoid DNA-binding protein cnd41 - like protein           181  9e-46
At3g59080 unknown protein                                             173  2e-43
At2g23945 putative protein                                            169  2e-42
At2g42980 hypothetical protein                                        168  5e-42
At3g25700 unknown protein                                             156  2e-38
At5g10770 nucleoid DNA-binding protein cnd41 - like protein           153  2e-37

>At5g33340 putative protein
          Length = 437

 Score =  318 bits (816), Expect = 3e-87
 Identities = 176/430 (40%), Positives = 257/430 (58%), Gaps = 17/430 (3%)

Query: 10  LCFLVVLYLLSCQTPIEAQDAGFSVQLTRQNSPHSPFYKPDNLHRHKLPS-FHQVPKKAF 68
           LC L  L+L +     +    GF+  L  ++SP SPFY P      +L +  H+   + F
Sbjct: 12  LCLLSSLFLSNANAKPKL---GFTADLIHRDSPKSPFYNPMETSSQRLRNAIHRSVNRVF 68

Query: 69  APNGPFSTR-----VTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQK 123
                 +T      +TSN+G+YLM +++G+PP  I  + DTGSDL+W QC+PC  CY Q 
Sbjct: 69  HFTEKDNTPQPQIDLTSNSGEYLMNVSIGTPPFPIMAIADTGSDLLWTQCAPCDDCYTQV 128

Query: 124 SPMFEPLSSKTFNPIPCDSEQCGSLFSH-SCSP-QKLCAYSYSYADSSVTKGVLARETIT 181
            P+F+P +S T+  + C S QC +L +  SCS     C+YS SY D+S TKG +A +T+T
Sbjct: 129 DPLFDPKTSSTYKDVSCSSSQCTALENQASCSTNDNTCSYSLSYGDNSYTKGNIAVDTLT 188

Query: 182 FSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQC 241
             S ++   + + +II GCGH+N+G FN+   G++GLGGGP+SL+ Q+G      +FS C
Sbjct: 189 LGS-SDTRPMQLKNIIIGCGHNNAGTFNKKGSGIVGLGGGPVSLIKQLGDSIDG-KFSYC 246

Query: 242 LVPFHADSRTSGTISFGDASDVSGEGVVTTPLVSEEGQ-TPYLVTLEGISVGDTFVSFNS 300
           LVP  +    +  I+FG  + VSG GVV+TPL+++  Q T Y +TL+ ISVG   + ++ 
Sbjct: 247 LVPLTSKKDQTSKINFGTNAIVSGSGVVSTPLIAKASQETFYYLTLKSISVGSKQIQYSG 306

Query: 301 SE-KLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNL 359
           S+ + S+GN++IDSGT  T LP EFY  L E+    S       DP  G  LCY +  +L
Sbjct: 307 SDSESSEGNIIIDSGTTLTLLPTEFYSEL-EDAVASSIDAEKKQDPQSGLSLCYSATGDL 365

Query: 360 EGPILTAHFEGADVQLMPIQTFIPPKDGVFCFAMAGTADGDYIFGNFAQSNILIGFDLDR 419
           + P++T HF+GADV+L     F+   + + CFA  G+     I+GN AQ N L+G+D   
Sbjct: 366 KVPVITMHFDGADVKLDSSNAFVQVSEDLVCFAFRGSPSFS-IYGNVAQMNFLVGYDTVS 424

Query: 420 KTISFKPTDC 429
           KT+SFKPTDC
Sbjct: 425 KTVSFKPTDC 434


>At1g64830 hypothetical protein
          Length = 431

 Score =  310 bits (794), Expect = 1e-84
 Identities = 175/431 (40%), Positives = 247/431 (56%), Gaps = 15/431 (3%)

Query: 10  LCFLVVLYLLSCQTPIEAQDAGFSVQLTRQNSPHSPFY--------KPDNLHRHKLPSFH 61
           L F  +L LL           GF++ L  ++SP SPFY        +  N  R    S  
Sbjct: 4   LIFATLLSLLLLSNVNAYPKDGFTIDLIHRDSPKSPFYNSAETSSQRMRNAIRRSARSTL 63

Query: 62  QVPKKAFAPNGPFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYK 121
           Q      +PN P S  +TSN G+YLM +++G+PPV I  + DTGSDL+W QC+PC  CY+
Sbjct: 64  QFSNDDASPNSPQSF-ITSNRGEYLMNISIGTPPVPILAIADTGSDLIWTQCNPCEDCYQ 122

Query: 122 QKSPMFEPLSSKTFNPIPCDSEQCGSLFSHSCS-PQKLCAYSYSYADSSVTKGVLARETI 180
           Q SP+F+P  S T+  + C S QC +L   SCS  +  C+Y+ +Y D+S TKG +A +T+
Sbjct: 123 QTSPLFDPKESSTYRKVSCSSSQCRALEDASCSTDENTCSYTITYGDNSYTKGDVAVDTV 182

Query: 181 TFSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQ 240
           T  S +    + + ++I GCGH N+G F+    G+IGLGGG  SLVSQ+       +FS 
Sbjct: 183 TMGS-SGRRPVSLRNMIIGCGHENTGTFDPAGSGIIGLGGGSTSLVSQLRKSING-KFSY 240

Query: 241 CLVPFHADSRTSGTISFGDASDVSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFVSFNS 300
           CLVPF +++  +  I+FG    VSG+GVV+T +V ++  T Y + LE ISVG   + F S
Sbjct: 241 CLVPFTSETGLTSKINFGTNGIVSGDGVVSTSMVKKDPATYYFLNLEAISVGSKKIQFTS 300

Query: 301 S-EKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNL 359
           +     +GN++IDSGT  T LP  FY  L E +   +       DPD    LCYR  ++ 
Sbjct: 301 TIFGTGEGNIVIDSGTTLTLLPSNFYYEL-ESVVASTIKAERVQDPDGILSLCYRDSSSF 359

Query: 360 EGPILTAHFEGADVQLMPIQTFIPPKDGVFCFAMAGTADGDYIFGNFAQSNILIGFDLDR 419
           + P +T HF+G DV+L  + TF+   + V CFA A   +   IFGN AQ N L+G+D   
Sbjct: 360 KVPDITVHFKGGDVKLGNLNTFVAVSEDVSCFAFAAN-EQLTIFGNLAQMNFLVGYDTVS 418

Query: 420 KTISFKPTDCT 430
            T+SFK TDC+
Sbjct: 419 GTVSFKKTDCS 429


>At1g31450 hypothetical protein
          Length = 445

 Score =  278 bits (712), Expect = 3e-75
 Identities = 159/444 (35%), Positives = 238/444 (52%), Gaps = 27/444 (6%)

Query: 7   FFHLCFLVVLYLLSCQTPIEAQDAGFSVQLTRQNSPHSPFYKP-----DNLHRHKLPSFH 61
           F +   L + +  +  +   A     +V+L  ++SPHSP Y P     D L+   L S  
Sbjct: 6   FLYCSLLAISFFFASNS--SANRENLTVELIHRDSPHSPLYNPHHTVSDRLNAAFLRSIS 63

Query: 62  QVPKKAFAPNGPFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYK 121
           +   + F       + + SN G+Y M +++G+PP  ++ + DTGSDL W QC PC  CYK
Sbjct: 64  R--SRRFTTKTDLQSGLISNGGEYFMSISIGTPPSKVFAIADTGSDLTWVQCKPCQQCYK 121

Query: 122 QKSPMFEPLSSKTFNPIPCDSEQCGSLFSH--SCSPQK-LCAYSYSYADSSVTKGVLARE 178
           Q SP+F+   S T+    CDS+ C +L  H   C   K +C Y YSY D+S TKG +A E
Sbjct: 122 QNSPLFDKKKSSTYKTESCDSKTCQALSEHEEGCDESKDICKYRYSYGDNSFTKGDVATE 181

Query: 179 TITFSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRF 238
           TI+  S ++G  +     +FGCG++N G F E   G+IGLGGGPLSLVSQ+G+  G ++F
Sbjct: 182 TISIDS-SSGSSVSFPGTVFGCGYNNGGTFEETGSGIIGLGGGPLSLVSQLGSSIG-KKF 239

Query: 239 SQCLVPFHADSRTSGTISFGDASDVSG----EGVVTTPLVSEEGQTPYLVTLEGISVGDT 294
           S CL    A +  +  I+ G  S  S        +TTPL+ ++ +T Y +TLE ++VG T
Sbjct: 240 SYCLSHTAATTNGTSVINLGTNSIPSNPSKDSATLTTPLIQKDPETYYFLTLEAVTVGKT 299

Query: 295 FVSF-------NSSEKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDL 347
            + +       N       GN++IDSGT  T L   FYD     ++   +     +DP  
Sbjct: 300 KLPYTGGGYGLNGKSSKRTGNIIIDSGTTLTLLDSGFYDDFGTAVEESVTGAKRVSDPQG 359

Query: 348 GTQLCYRS-ETNLEGPILTAHFEGADVQLMPIQTFIPPKDGVFCFAMAGTADGDYIFGNF 406
               C++S +  +  P +T HF  ADV+L PI  F+   +   C +M  T +   I+GN 
Sbjct: 360 LLTHCFKSGDKEIGLPAITMHFTNADVKLSPINAFVKLNEDTVCLSMIPTTE-VAIYGNM 418

Query: 407 AQSNILIGFDLDRKTISFKPTDCT 430
            Q + L+G+DL+ KT+SF+  DC+
Sbjct: 419 VQMDFLVGYDLETKTVSFQRMDCS 442


>At2g03200 putative chloroplast nucleoid DNA binding protein
          Length = 461

 Score =  220 bits (561), Expect = 1e-57
 Identities = 137/368 (37%), Positives = 201/368 (54%), Gaps = 33/368 (8%)

Query: 82  NGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCD 141
           +G++LM+L++G+P V    +VDTGSDL+W QC PC  C+ Q +P+F+P  S +++ + C 
Sbjct: 104 SGEFLMELSIGNPAVKYSAIVDTGSDLIWTQCKPCTECFDQPTPIFDPEKSSSYSKVGCS 163

Query: 142 SEQCGSLFSHSCSPQK-LCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGC 200
           S  C +L   +C+  K  C Y Y+Y D S T+G+LA ET TF      DE  +  I FGC
Sbjct: 164 SGLCNALPRSNCNEDKDACEYLYTYGDYSSTRGLLATETFTFE-----DENSISGIGFGC 218

Query: 201 GHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGD- 259
           G  N G       G++GLG GPLSL+SQ+       +FS CL     DS  S ++  G  
Sbjct: 219 GVENEGDGFSQGSGLVGLGRGPLSLISQL----KETKFSYCLTSIE-DSEASSSLFIGSL 273

Query: 260 --------ASDVSGEGVVTTPLVSEEGQTP-YLVTLEGISVGDTFVSFNSS----EKLSK 306
                    + + GE   T  L+    Q   Y + L+GI+VG   +S   S     +   
Sbjct: 274 ASGIVNKTGASLDGEVTKTMSLLRNPDQPSFYYLELQGITVGAKRLSVEKSTFELAEDGT 333

Query: 307 GNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYR---SETNLEGPI 363
           G M+IDSGT  TYL +  +  L EE   + S LPVD+    G  LC++   +  N+  P 
Sbjct: 334 GGMIIDSGTTITYLEETAFKVLKEEFTSRMS-LPVDDSGSTGLDLCFKLPDAAKNIAVPK 392

Query: 364 LTAHFEGADVQLMPIQTFI--PPKDGVFCFAMAGTADGDYIFGNFAQSNILIGFDLDRKT 421
           +  HF+GAD++L P + ++      GV C AM G+++G  IFGN  Q N  +  DL+++T
Sbjct: 393 MIFHFKGADLEL-PGENYMVADSSTGVLCLAM-GSSNGMSIFGNVQQQNFNVLHDLEKET 450

Query: 422 ISFKPTDC 429
           +SF PT+C
Sbjct: 451 VSFVPTEC 458


>At2g28030 putative chloroplast nucleoid DNA binding protein
          Length = 392

 Score =  216 bits (551), Expect = 1e-56
 Identities = 144/403 (35%), Positives = 207/403 (50%), Gaps = 31/403 (7%)

Query: 33  SVQLTRQNSPHSPFYKPDNLHRHKLPSFHQVPKKAFAPNGPFSTRVTSNNGDYLMKLTLG 92
           S+  T  +SPH   +  D + R    S  ++ K       P++  +   N  YLMKL +G
Sbjct: 12  SLFTTTASSPHG--FTIDLIQRRSNSSSSRLSKNQLQGASPYADTLFDYN-IYLMKLQVG 68

Query: 93  SPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCDSEQCGSLFSHS 152
           +PP +I   +DTGSDL+W QC PC  CY Q +P+F+P +S TF    C+           
Sbjct: 69  TPPFEIEAEIDTGSDLIWTQCMPCTNCYSQYAPIFDPSNSSTFKEKRCNGNS-------- 120

Query: 153 CSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSNSGAFNEND 212
                 C Y   YAD++ +KG LA ET+T  S T+G+  V+ +   GCGH NS  F    
Sbjct: 121 ------CHYKIIYADTTYSKGTLATETVTIHS-TSGEPFVMPETTIGCGH-NSSWFKPTF 172

Query: 213 MGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVV-TT 271
            G++GL  GP SL++QMG  Y        L+ +   S+ +  I+FG  + V+G+GVV TT
Sbjct: 173 SGMVGLSWGPSSLITQMGGEYPG------LMSYCFASQGTSKINFGTNAIVAGDGVVSTT 226

Query: 272 PLVSEEGQTPYLVTLEGISVGDTFV-SFNSSEKLSKGNMMIDSGTPATYLPQEFYDRLVE 330
             ++      Y + L+ +SVGDT V +  ++    +GN++IDSGT  TY P   Y  LV 
Sbjct: 227 MFLTTAKPGLYYLNLDAVSVGDTHVETMGTTFHALEGNIIIDSGTTLTYFPVS-YCNLVR 285

Query: 331 ELKVQSSLLPVDNDPDLGTQLCYRSETNLEGPILTAHFE-GADVQLMPIQTFIPP-KDGV 388
           E            DP     LCY ++T    P++T HF  GAD+ L     +I     G 
Sbjct: 286 EAVDHYVTAVRTADPTGNDMLCYYTDTIDIFPVITMHFSGGADLVLDKYNMYIETITRGT 345

Query: 389 FCFA-MAGTADGDYIFGNFAQSNILIGFDLDRKTISFKPTDCT 430
           FC A +      D IFGN AQ+N L+G+D     +SF PT+C+
Sbjct: 346 FCLAIICNNPPQDAIFGNRAQNNFLVGYDSSSLLVSFSPTNCS 388


>At2g28010 putative chloroplast nucleoid DNA binding protein
          Length = 396

 Score =  211 bits (537), Expect = 6e-55
 Identities = 139/399 (34%), Positives = 208/399 (51%), Gaps = 33/399 (8%)

Query: 37  TRQNSPHSPFYKPDNLHRHKLPSFHQVPKKAFAPNGPFSTRVTSNNGDYLMKLTLGSPPV 96
           T  + PH   +  D +HR    S         + + P++  V  N+  YLMKL +G+PP 
Sbjct: 22  TTASPPHG--FTMDLIHRRSNASSRV--SNTQSGSSPYANTVFDNSV-YLMKLQVGTPPF 76

Query: 97  DIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCDSEQCGSLFSHSCSPQ 156
           +I  ++DTGS++ W QC PC  CY+Q +P+F+P  S TF    CD         HS    
Sbjct: 77  EIQAIIDTGSEITWTQCLPCVHCYEQNAPIFDPSKSSTFKEKRCD--------GHS---- 124

Query: 157 KLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVI 216
             C Y   Y D + T G LA ETIT  S T+G+  V+ + I GCGH+NS  F  +  G++
Sbjct: 125 --CPYEVDYFDHTYTMGTLATETITLHS-TSGEPFVMPETIIGCGHNNSW-FKPSFSGMV 180

Query: 217 GLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVVTTPLVSE 276
           GL  GP SL++QMG  Y        L+ +    + +  I+FG  + V+G+GVV+T +   
Sbjct: 181 GLNWGPSSLITQMGGEYPG------LMSYCFSGQGTSKINFGANAIVAGDGVVSTTMFMT 234

Query: 277 EGQTP-YLVTLEGISVGDTFV-SFNSSEKLSKGNMMIDSGTPATYLPQEFYDRLVEELKV 334
             +   Y + L+ +SVG+T + +  ++    +GN++IDSGT  TY P   Y  LV +   
Sbjct: 235 TAKPGFYYLNLDAVSVGNTRIETMGTTFHALEGNIVIDSGTTLTYFPVS-YCNLVRQAVE 293

Query: 335 QSSLLPVDNDPDLGTQLCYRSETNLEGPILTAHFE-GADVQLMPIQTFIPPKD-GVFCFA 392
                    DP     LCY S+T    P++T HF  G D+ L     ++   + GVFC A
Sbjct: 294 HVVTAVRAADPTGNDMLCYNSDTIDIFPVITMHFSGGVDLVLDKYNMYMESNNGGVFCLA 353

Query: 393 -MAGTADGDYIFGNFAQSNILIGFDLDRKTISFKPTDCT 430
            +  +   + IFGN AQ+N L+G+D     +SF PT+C+
Sbjct: 354 IICNSPTQEAIFGNRAQNNFLVGYDSSSLLVSFSPTNCS 392


>At2g28040 chloroplast nucleoid DNA binding like protein
          Length = 395

 Score =  206 bits (524), Expect = 2e-53
 Identities = 135/352 (38%), Positives = 190/352 (53%), Gaps = 29/352 (8%)

Query: 84  DYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCDSE 143
           +YLMKL +G+PP +I  ++DTGS+ +W QC PC  CY Q +P+F+P  S TF  I CD+ 
Sbjct: 64  EYLMKLQIGTPPFEIEAVLDTGSEHIWTQCLPCVHCYNQTAPIFDPSKSSTFKEIRCDTH 123

Query: 144 QCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHS 203
                  HS      C Y   Y   S TKG L  ET+T  S T+G   V+ + I GCG +
Sbjct: 124 ------DHS------CPYELVYGGKSYTKGTLVTETVTIHS-TSGQPFVMPETIIGCGRN 170

Query: 204 NSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDASDV 263
           NSG F     GV+GL  GP SL++QMG  Y        L+ +    + +  I+FG  + V
Sbjct: 171 NSG-FKPGFAGVVGLDRGPKSLITQMGGEYPG------LMSYCFAGKGTSKINFGANAIV 223

Query: 264 SGEGVV-TTPLVSEEGQTPYLVTLEGISVGDTFV-SFNSSEKLSKGNMMIDSGTPATYLP 321
           +G+GVV TT  V       Y + L+ +SVG+T + +  +     KGN++IDSG+  TY P
Sbjct: 224 AGDGVVSTTVFVKTAKPGFYYLNLDAVSVGNTRIETVGTPFHALKGNIVIDSGSTLTYFP 283

Query: 322 QEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNLEGPILTAHFE-GADVQLMPIQT 380
            E Y  LV +   Q          D+   LCY S+T    P++T HF  GAD+ L     
Sbjct: 284 -ESYCNLVRKAVEQVVTAVRFPRSDI---LCYYSKTIDIFPVITMHFSGGADLVLDKYNM 339

Query: 381 FIPPK-DGVFCFA-MAGTADGDYIFGNFAQSNILIGFDLDRKTISFKPTDCT 430
           ++     GVFC A +  +   + IFGN AQ+N L+G+D     +SFKPT+C+
Sbjct: 340 YVASNTGGVFCLAIICNSPIEEAIFGNRAQNNFLVGYDSSSLLVSFKPTNCS 391


>At1g01300 chloroplast nucleoid DNA binding protein like
          Length = 485

 Score =  206 bits (523), Expect = 3e-53
 Identities = 140/371 (37%), Positives = 189/371 (50%), Gaps = 24/371 (6%)

Query: 72  GPFSTRVTSN----NGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMF 127
           G FS+ V S     +G+Y  +L +G+P   +Y ++DTGSD+VW QC+PC  CY Q  P+F
Sbjct: 125 GGFSSSVVSGLSQGSGEYFTRLGVGTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIF 184

Query: 128 EPLSSKTFNPIPCDSEQCGSLFSHSCSP-QKLCAYSYSYADSSVTKGVLARETITFSSPT 186
           +P  SKT+  IPC S  C  L S  C+  +K C Y  SY D S T G  + ET+TF    
Sbjct: 185 DPRKSKTYATIPCSSPHCRRLDSAGCNTRRKTCLYQVSYGDGSFTVGDFSTETLTFRRNR 244

Query: 187 NGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFH 246
                 V  +  GCGH N G F     G++GLG G LS   Q G  + +++FS CLV   
Sbjct: 245 ------VKGVALGCGHDNEGLF-VGAAGLLGLGKGKLSFPGQTGHRF-NQKFSYCLVDRS 296

Query: 247 ADSRTSGTISFGDASDVSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFV-----SFNSS 301
           A S+ S  + FG+A+ VS     T  L + +  T Y V L GISVG T V     S    
Sbjct: 297 ASSKPSSVV-FGNAA-VSRIARFTPLLSNPKLDTFYYVGLLGISVGGTRVPGVTASLFKL 354

Query: 302 EKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETN-LE 360
           +++  G ++IDSGT  T L +  Y  + +  +V +  L    D  L       S  N ++
Sbjct: 355 DQIGNGGVIIDSGTSVTRLIRPAYIAMRDAFRVGAKTLKRAPDFSLFDTCFDLSNMNEVK 414

Query: 361 GPILTAHFEGADVQLMPIQTFIPPKD--GVFCFAMAGTADGDYIFGNFAQSNILIGFDLD 418
            P +  HF GADV L P   ++ P D  G FCFA AGT  G  I GN  Q    + +DL 
Sbjct: 415 VPTVVLHFRGADVSL-PATNYLIPVDTNGKFCFAFAGTMGGLSIIGNIQQQGFRVVYDLA 473

Query: 419 RKTISFKPTDC 429
              + F P  C
Sbjct: 474 SSRVGFAPGGC 484


>At1g25510 unknown protein
          Length = 483

 Score =  205 bits (522), Expect = 3e-53
 Identities = 131/368 (35%), Positives = 188/368 (50%), Gaps = 31/368 (8%)

Query: 73  PFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSS 132
           P  +  T  +G+Y  ++ +G P  ++Y ++DTGSD+ W QC+PC  CY Q  P+FEP SS
Sbjct: 136 PLISGTTQGSGEYFTRVGIGKPAREVYMVLDTGSDVNWLQCTPCADCYHQTEPIFEPSSS 195

Query: 133 KTFNPIPCDSEQCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELV 192
            ++ P+ CD+ QC +L    C     C Y  SY D S T G  A ET+T  S       +
Sbjct: 196 SSYEPLSCDTPQCNALEVSECR-NATCLYEVSYGDGSYTVGDFATETLTIGS------TL 248

Query: 193 VGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTS 252
           V ++  GCGHSN G F     G++GLGGG L+L SQ+     +  FS CLV    DS ++
Sbjct: 249 VQNVAVGCGHSNEGLF-VGAAGLLGLGGGLLALPSQL----NTTSFSYCLV--DRDSDSA 301

Query: 253 GTISFGDASDVSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFVSFNSS----EKLSKGN 308
            T+ FG  + +S + VV   L + +  T Y + L GISVG   +    S    ++   G 
Sbjct: 302 STVDFG--TSLSPDAVVAPLLRNHQLDTFYYLGLTGISVGGELLQIPQSSFEMDESGSGG 359

Query: 309 MMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQL---CYR--SETNLEGPI 363
           ++IDSGT  T L  E Y+ L +   V+ +L   D +   G  +   CY   ++T +E P 
Sbjct: 360 IIIDSGTAVTRLQTEIYNSLRDSF-VKGTL---DLEKAAGVAMFDTCYNLSAKTTVEVPT 415

Query: 364 LTAHFEGADVQLMPIQTFIPPKD--GVFCFAMAGTADGDYIFGNFAQSNILIGFDLDRKT 421
           +  HF G  +  +P + ++ P D  G FC A A TA    I GN  Q    + FDL    
Sbjct: 416 VAFHFPGGKMLALPAKNYMIPVDSVGTFCLAFAPTASSLAIIGNVQQQGTRVTFDLANSL 475

Query: 422 ISFKPTDC 429
           I F    C
Sbjct: 476 IGFSSNKC 483


>At2g28220 putative chloroplast nucleoid DNA binding protein
          Length = 756

 Score =  204 bits (520), Expect = 6e-53
 Identities = 124/357 (34%), Positives = 188/357 (51%), Gaps = 36/357 (10%)

Query: 85  YLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCDSEQ 144
           YLMKL +G+PP +I   +DTGSD++W QC PC  CY Q +P+F+P  S TF    C+   
Sbjct: 421 YLMKLQVGTPPFEIVAEIDTGSDIIWTQCMPCPNCYSQFAPIFDPSKSSTFREQRCNGNS 480

Query: 145 CGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSN 204
                         C Y   YAD + +KG+LA ET+T  S T+G+  V+ +   GCG  N
Sbjct: 481 --------------CHYEIIYADKTYSKGILATETVTIPS-TSGEPFVMAETKIGCGLDN 525

Query: 205 S----GAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDA 260
           +      F  +  G++GL  GPLSL+SQM   Y        L+ +    + +  I+FG  
Sbjct: 526 TNLQYSGFASSSSGIVGLNMGPLSLISQMDLPYPG------LISYCFSGQGTSKINFGTN 579

Query: 261 SDVSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFV-SFNSSEKLSKGNMMIDSGTPATY 319
           + V+G+G V   +  ++    Y + L+ +SV D  + +  +      GN+ IDSGT  TY
Sbjct: 580 AIVAGDGTVAADMFIKKDNPFYYLNLDAVSVEDNLIATLGTPFHAEDGNIFIDSGTTLTY 639

Query: 320 LPQEFYDRLVEELKVQSSLLPVDNDPDLGTQ--LCYRSETNLEGPILTAHFE-GADVQLM 376
            P  + + + E ++   + + V   PD+G+   LCY S+T    P++T HF  GAD+ L 
Sbjct: 640 FPMSYCNLVREAVEQVVTAVKV---PDMGSDNLLCYYSDTIDIFPVITMHFSGGADLVLD 696

Query: 377 PIQTFIPP-KDGVFCFAMAGTADGDY--IFGNFAQSNILIGFDLDRKTISFKPTDCT 430
               ++     G+FC A+ G  D     +FGN AQ+N L+G+D     ISF PT+C+
Sbjct: 697 KYNMYLETITGGIFCLAI-GCNDPSMPAVFGNRAQNNFLVGYDPSSNVISFSPTNCS 752



 Score =  193 bits (491), Expect = 1e-49
 Identities = 129/388 (33%), Positives = 191/388 (48%), Gaps = 33/388 (8%)

Query: 37  TRQNSPHSPFYKPDNLHRHKLPSFHQVPKKAFAPNGPFSTRVTSNNGDYLMKLTLGSPPV 96
           T  +SPH   +  D + R    S  ++ K       P++  +   N  YLMKL +G+PP 
Sbjct: 37  TTVSSPHG--FTIDLIQRRSNSSSFRLSKNQLQGASPYADTLFDYN-IYLMKLQVGTPPF 93

Query: 97  DIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCDSEQCGSLFSHSCSPQ 156
           +I   +DTGSDL+W QC PC  CY Q  P+F+P  S TFN   C                
Sbjct: 94  EIAAEIDTGSDLIWTQCMPCPDCYSQFDPIFDPSKSSTFNEQRCHG-------------- 139

Query: 157 KLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSN----SGAFNEND 212
           K C Y   Y D++ +KG+LA ET+T  S T+G+  V+ +   GCG  N    +  F  + 
Sbjct: 140 KSCHYEIIYEDNTYSKGILATETVTIHS-TSGEPFVMAETTIGCGLHNTDLDNSGFASSS 198

Query: 213 MGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVVTTP 272
            G++GL  GP SL+SQM   Y        L+ +    + +  I+FG  + V+G+G V   
Sbjct: 199 SGIVGLNMGPRSLISQMDLPYPG------LISYCFSGQGTSKINFGTNAIVAGDGTVAAD 252

Query: 273 LVSEEGQTPYLVTLEGISVGDTFV-SFNSSEKLSKGNMMIDSGTPATYLPQEFYDRLVEE 331
           +  ++    Y + L+ +SV D  + +  +      GN++IDSG+  TY P   Y  LV +
Sbjct: 253 MFIKKDNPFYYLNLDAVSVEDNRIETLGTPFHAEDGNIVIDSGSTVTYFPVS-YCNLVRK 311

Query: 332 LKVQSSLLPVDNDPDLGTQLCYRSETNLEGPILTAHFE-GADVQLMPIQTFIPPKD-GVF 389
              Q        DP     LCY SET    P++T HF  GAD+ L     ++     G+F
Sbjct: 312 AVEQVVTAVRVPDPSGNDMLCYFSETIDIFPVITMHFSGGADLVLDKYNMYMESNSGGLF 371

Query: 390 CFA-MAGTADGDYIFGNFAQSNILIGFD 416
           C A +  +   + IFGN AQ+N L+G+D
Sbjct: 372 CLAIICNSPTQEAIFGNRAQNNFLVGYD 399


>At5g33350 putative protein
          Length = 293

 Score =  201 bits (511), Expect = 6e-52
 Identities = 124/331 (37%), Positives = 180/331 (53%), Gaps = 49/331 (14%)

Query: 103 DTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCDSEQCGSLFSH-SCSPQ-KLCA 160
           DTGSDL+W QC PC  CY Q  P+F+P +S T+  + C S QC +L    SCS +   C+
Sbjct: 5   DTGSDLIWTQCKPCDDCYTQVDPLFDPKASSTYKDVSCPSSQCRALKDDASCSKKDNTCS 64

Query: 161 YSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGG 220
           YS +Y D+S ++G +A +T+T  S T+   + V +II GCGH N+  F     G++GLGG
Sbjct: 65  YSMNYGDNSYSRGNVAVDTLTLGS-TDNRPVQVKNIIIGCGHENAVTFRNKSSGIVGLGG 123

Query: 221 GPLSLVSQMG-ALYGSRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVVTTPLVSEEGQ 279
           G +SLV Q+G ++ G  +FS CLVP   ++  +  ISFG  + VSG G V+TPLV +  +
Sbjct: 124 GAVSLVKQLGDSIEG--KFSYCLVP---ENDQTSKISFGTNAVVSGPGTVSTPLVVKSPE 178

Query: 280 TPYLVTLEGISVGDTFVSFNSSEKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLL 339
           T Y +TL+ I+VG   +    S+   KGNM+IDSGT  T LP ++Y ++   +   +SL+
Sbjct: 179 TFYFLTLKSITVGSKNMPTPGSD--IKGNMVIDSGTTLTLLPGKYYFQIESAV---ASLI 233

Query: 340 PVDNDPDLGTQLCYRSETNLEGPILTAHFEGADVQLMPIQTFIPPKDGVFCFAMA-GTAD 398
             +   D                                +  +   D + CFA       
Sbjct: 234 DAERSKD--------------------------------ERIV--SDDLVCFAFGLNLIT 259

Query: 399 GDYIFGNFAQSNILIGFDLDRKTISFKPTDC 429
            D I+GN AQ N L+G+D   K++SFK TDC
Sbjct: 260 RDGIYGNVAQKNFLVGYDTVSKSLSFKKTDC 290


>At3g61820 unknown protein
          Length = 483

 Score =  190 bits (483), Expect = 1e-48
 Identities = 132/381 (34%), Positives = 182/381 (47%), Gaps = 22/381 (5%)

Query: 62  QVPKKAFAPNGPFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYK 121
           + P+ A   +G   + ++  +G+Y M+L +G+P  ++Y ++DTGSD+VW QCSPC  CY 
Sbjct: 112 RTPRTAGGFSGAVISGLSQGSGEYFMRLGVGTPATNVYMVLDTGSDVVWLQCSPCKACYN 171

Query: 122 QKSPMFEPLSSKTFNPIPCDSEQCGSLFSHS---CSPQKLCAYSYSYADSSVTKGVLARE 178
           Q   +F+P  SKTF  +PC S  C  L   S       K C Y  SY D S T+G  + E
Sbjct: 172 QTDAIFDPKKSKTFATVPCGSRLCRRLDDSSECVTRRSKTCLYQVSYGDGSFTEGDFSTE 231

Query: 179 TITFSSPTNGDELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRF 238
           T+TF          V  +  GCGH N G F     G++GLG G LS  SQ    Y   +F
Sbjct: 232 TLTFHGAR------VDHVPLGCGHDNEGLF-VGAAGLLGLGRGGLSFPSQTKNRYNG-KF 283

Query: 239 SQCLV---PFHADSRTSGTISFGDASDVSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTF 295
           S CLV      + S+   TI FG+A+ V    V T  L + +  T Y + L GISVG + 
Sbjct: 284 SYCLVDRTSSGSSSKPPSTIVFGNAA-VPKTSVFTPLLTNPKLDTFYYLQLLGISVGGSR 342

Query: 296 VSFNSSEKL-----SKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDL-GT 349
           V   S  +        G ++IDSGT  T L Q  Y  L +  ++ ++ L       L  T
Sbjct: 343 VPGVSESQFKLDATGNGGVIIDSGTSVTRLTQPAYVALRDAFRLGATKLKRAPSYSLFDT 402

Query: 350 QLCYRSETNLEGPILTAHFEGADVQLMPIQTFIPPK-DGVFCFAMAGTADGDYIFGNFAQ 408
                  T ++ P +  HF G +V L      IP   +G FCFA AGT     I GN  Q
Sbjct: 403 CFDLSGMTTVKVPTVVFHFGGGEVSLPASNYLIPVNTEGRFCFAFAGTMGSLSIIGNIQQ 462

Query: 409 SNILIGFDLDRKTISFKPTDC 429
               + +DL    + F    C
Sbjct: 463 QGFRVAYDLVGSRVGFLSRAC 483


>At3g18490 chloroplast nucleoid DNA-binding protein like
          Length = 500

 Score =  189 bits (479), Expect = 3e-48
 Identities = 123/366 (33%), Positives = 182/366 (49%), Gaps = 24/366 (6%)

Query: 73  PFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSS 132
           P  +  +  +G+Y  ++ +G+P  ++Y ++DTGSD+ W QC PC  CY+Q  P+F P SS
Sbjct: 150 PVVSGASQGSGEYFSRIGVGTPAKEMYLVLDTGSDVNWIQCEPCADCYQQSDPVFNPTSS 209

Query: 133 KTFNPIPCDSEQCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELV 192
            T+  + C + QC  L + +C   K C Y  SY D S T G LA +T+TF     G+   
Sbjct: 210 STYKSLTCSAPQCSLLETSACRSNK-CLYQVSYGDGSFTVGELATDTVTF-----GNSGK 263

Query: 193 VGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTS 252
           + ++  GCGH N G F     G++GLGGG LS+ +QM A      FS CLV    DS  S
Sbjct: 264 INNVALGCGHDNEGLFT-GAAGLLGLGGGVLSITNQMKA----TSFSYCLV--DRDSGKS 316

Query: 253 GTISFGDASDVSGEGVVTTPLV-SEEGQTPYLVTLEGISVGDTFVSFNSS----EKLSKG 307
            ++ F       G G  T PL+ +++  T Y V L G SVG   V    +    +    G
Sbjct: 317 SSLDFNSVQ--LGGGDATAPLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSG 374

Query: 308 NMMIDSGTPATYLPQEFYDRLVEE-LKVQSSLLPVDNDPDL-GTQLCYRSETNLEGPILT 365
            +++D GT  T L  + Y+ L +  LK+  +L    +   L  T   + S + ++ P + 
Sbjct: 375 GVILDCGTAVTRLQTQAYNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVA 434

Query: 366 AHFEGADVQLMPIQTFIPPKD--GVFCFAMAGTADGDYIFGNFAQSNILIGFDLDRKTIS 423
            HF G     +P + ++ P D  G FCFA A T+    I GN  Q    I +DL +  I 
Sbjct: 435 FHFTGGKSLDLPAKNYLIPVDDSGTFCFAFAPTSSSLSIIGNVQQQGTRITYDLSKNVIG 494

Query: 424 FKPTDC 429
                C
Sbjct: 495 LSGNKC 500


>At3g20015 putative nucleoid chloroplast DNA-binding protein
          Length = 386

 Score =  186 bits (471), Expect = 3e-47
 Identities = 118/357 (33%), Positives = 176/357 (49%), Gaps = 23/357 (6%)

Query: 82  NGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNPIPCD 141
           +G+Y +++ +GSPP D Y ++D+GSD+VW QC PC  CYKQ  P+F+P  S ++  + C 
Sbjct: 44  SGEYFVRIGVGSPPRDQYMVIDSGSDMVWVQCQPCKLCYKQSDPVFDPAKSGSYTGVSCG 103

Query: 142 SEQCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCG 201
           S  C  + +  C     C Y   Y D S TKG LA ET+TF+      + VV ++  GCG
Sbjct: 104 SSVCDRIENSGCHSGG-CRYEVMYGDGSYTKGTLALETLTFA------KTVVRNVAMGCG 156

Query: 202 HSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDAS 261
           H N G F     G++G+GGG +S V Q+    G   F  CLV    DS  +G++ FG   
Sbjct: 157 HRNRGMF-IGAAGLLGIGGGSMSFVGQLSGQTGG-AFGYCLVSRGTDS--TGSLVFG--R 210

Query: 262 DVSGEGVVTTPLV-SEEGQTPYLVTLEGISVGDTFVSFNSS----EKLSKGNMMIDSGTP 316
           +    G    PLV +    + Y V L+G+ VG   +          +   G +++D+GT 
Sbjct: 211 EALPVGASWVPLVRNPRAPSFYYVGLKGLGVGGVRIPLPDGVFDLTETGDGGVVMDTGTA 270

Query: 317 ATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCY--RSETNLEGPILTAHFEGADVQ 374
            T LP   Y    +  K Q++ LP  +   +    CY      ++  P ++ +F    V 
Sbjct: 271 VTRLPTAAYVAFRDGFKSQTANLPRASGVSI-FDTCYDLSGFVSVRVPTVSFYFTEGPVL 329

Query: 375 LMPIQTFIPPKD--GVFCFAMAGTADGDYIFGNFAQSNILIGFDLDRKTISFKPTDC 429
            +P + F+ P D  G +CFA A +  G  I GN  Q  I + FD     + F P  C
Sbjct: 330 TLPARNFLMPVDDSGTYCFAFAASPTGLSIIGNIQQEGIQVSFDGANGFVGFGPNVC 386


>At5g10760 nucleoid DNA-binding protein cnd41 - like protein
          Length = 464

 Score =  181 bits (458), Expect = 9e-46
 Identities = 130/362 (35%), Positives = 181/362 (49%), Gaps = 22/362 (6%)

Query: 73  PFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHG-CYKQKSPMFEPLS 131
           P  + +T  +G+Y++ + +G+P  D+  + DTGSDL W QC PC G CY QK P F P S
Sbjct: 120 PAKSGITLGSGNYIVTIGIGTPKHDLSLVFDTGSDLTWTQCEPCLGSCYSQKEPKFNPSS 179

Query: 132 SKTFNPIPCDSEQCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDEL 191
           S T+  + C S  C    + SCS    C YS  Y D S T+G LA+E  T    TN D  
Sbjct: 180 SSTYQNVSCSSPMCED--AESCSASN-CVYSIVYGDKSFTQGFLAKEKFTL---TNSD-- 231

Query: 192 VVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRT 251
           V+ D+ FGCG +N G F +   G++GLG G LSL +Q    Y +  FS CL  F   S +
Sbjct: 232 VLEDVYFGCGENNQGLF-DGVAGLLGLGPGKLSLPAQTTTTY-NNIFSYCLPSF--TSNS 287

Query: 252 SGTISFGDASDVSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFVSFNSSEKLSKGNMMI 311
           +G ++FG A     E V  TP+ S      Y + + GISVGD  ++   +   ++G  +I
Sbjct: 288 TGHLTFGSAG--ISESVKFTPISSFPSAFNYGIDIIGISVGDKELAITPNSFSTEG-AII 344

Query: 312 DSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDPDLGTQLCYRSETNLEG---PILTAHF 368
           DSGT  T LP + Y  L    K + S     +   L    CY   T L+    P +   F
Sbjct: 345 DSGTVFTRLPTKVYAELRSVFKEKMSSYKSTSGYGL-FDTCY-DFTGLDTVTYPTIAFSF 402

Query: 369 EGAD-VQLMPIQTFIPPKDGVFCFAMAGTADGDYIFGNFAQSNILIGFDLDRKTISFKPT 427
            G+  V+L      +P K    C A AG  D   IFGN  Q+ + + +D+    + F P 
Sbjct: 403 AGSTVVELDGSGISLPIKISQVCLAFAGNDDLPAIFGNVQQTTLDVVYDVAGGRVGFAPN 462

Query: 428 DC 429
            C
Sbjct: 463 GC 464


>At3g59080 unknown protein
          Length = 535

 Score =  173 bits (438), Expect = 2e-43
 Identities = 126/375 (33%), Positives = 190/375 (50%), Gaps = 24/375 (6%)

Query: 78  VTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNP 137
           +T  +G+Y M + +GSPP     ++DTGSDL W QC PC+ C++Q    ++P +S ++  
Sbjct: 163 MTLGSGEYFMDVLVGSPPKHFSLILDTGSDLNWIQCLPCYDCFQQNGAFYDPKASASYKN 222

Query: 138 IPCDSEQCGSLFSHS----C-SPQKLCAYSYSYADSSVTKGVLARETITFSSPTNG--DE 190
           I C+ ++C  + S      C S  + C Y Y Y DSS T G  A ET T +  TNG   E
Sbjct: 223 ITCNDQRCNLVSSPDPPMPCKSDNQSCPYYYWYGDSSNTTGDFAVETFTVNLTTNGGSSE 282

Query: 191 LV-VGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADS 249
           L  V +++FGCGH N G F+    G++GLG GPLS  SQ+ +LYG   FS CLV  ++D+
Sbjct: 283 LYNVENMMFGCGHWNRGLFH-GAAGLLGLGRGPLSFSSQLQSLYG-HSFSYCLVDRNSDT 340

Query: 250 RTSGTISFGDASD-VSGEGVVTTPLVSEEG---QTPYLVTLEGISVGDTFV-----SFNS 300
             S  + FG+  D +S   +  T  V+ +     T Y V ++ I V    +     ++N 
Sbjct: 341 NVSSKLIFGEDKDLLSHPNLNFTSFVAGKENLVDTFYYVQIKSILVAGEVLNIPEETWNI 400

Query: 301 SEKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQS-SLLPVDND-PDLGTQLCYRSETN 358
           S     G  +IDSGT  +Y  +  Y+ +  ++  ++    PV  D P L          N
Sbjct: 401 SSD-GAGGTIIDSGTTLSYFAEPAYEFIKNKIAEKAKGKYPVYRDFPILDPCFNVSGIHN 459

Query: 359 LEGPILTAHFEGADVQLMPIQ-TFIPPKDGVFCFAMAGTADGDY-IFGNFAQSNILIGFD 416
           ++ P L   F    V   P + +FI   + + C AM GT    + I GN+ Q N  I +D
Sbjct: 460 VQLPELGIAFADGAVWNFPTENSFIWLNEDLVCLAMLGTPKSAFSIIGNYQQQNFHILYD 519

Query: 417 LDRKTISFKPTDCTN 431
             R  + + PT C +
Sbjct: 520 TKRSRLGYAPTKCAD 534


>At2g23945 putative protein
          Length = 458

 Score =  169 bits (429), Expect = 2e-42
 Identities = 121/369 (32%), Positives = 177/369 (47%), Gaps = 40/369 (10%)

Query: 85  YLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKS--PMFEPLSSKTFNPIPCDS 142
           +L+  ++G PPV    ++DTGS L+W QC PC  C       P+F P  S TF    CD 
Sbjct: 96  FLVNFSVGQPPVPQLTIMDTGSSLLWIQCQPCKHCSSDHMIHPVFNPALSSTFVECSCDD 155

Query: 143 EQCGSLFSHSCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGH 202
             C    +  C     C Y   Y   + +KGVLA+E +TF++P NG+ +V   I FGCG+
Sbjct: 156 RFCRYAPNGHCGSSNKCVYEQVYISGTGSKGVLAKERLTFTTP-NGNTVVTQPIAFGCGY 214

Query: 203 SNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDASD 262
            N      +  G++GLG  P SL  Q+G+     +FS C+      +     +  G+ +D
Sbjct: 215 ENGEQLESHFTGILGLGAKPTSLAVQLGS-----KFSYCIGDLANKNYGYNQLVLGEDAD 269

Query: 263 VSGEGVVTTPLVSEEGQTPYLVTLEGISVGDTFVSFNSSEKLSKG---NMMIDSGTPATY 319
           + G+    TP+  E   + Y + LEGISVGDT ++        +G    +++DSGT  T+
Sbjct: 270 ILGD---PTPIEFETENSIYYMNLEGISVGDTQLNIEPVVFKRRGPRTGVILDSGTLYTW 326

Query: 320 LPQEFYDRLVEELKVQSSLLPVDNDPDL-----GTQLCYR---SETNLEGPILTAHFE-G 370
           L    Y  L  E+K   S+L    DP L        LCY    SE  +  P++T HF  G
Sbjct: 327 LADIAYRELYNEIK---SIL----DPKLERFWFRDFLCYHGRVSEELIGFPVVTFHFAGG 379

Query: 371 ADVQLMPIQTFIPPKD----GVFCFAMAGTAD--GDY----IFGNFAQSNILIGFDLDRK 420
           A++ +     F P  +     VFC ++  T +  G+Y      G  AQ    IG+DL  K
Sbjct: 380 AELAMEATSMFYPLSEPNTFNVFCMSVKPTKEHGGEYKEFTAIGLMAQQYYNIGYDLKEK 439

Query: 421 TISFKPTDC 429
            I  +  DC
Sbjct: 440 NIYLQRIDC 448


>At2g42980 hypothetical protein
          Length = 481

 Score =  168 bits (426), Expect = 5e-42
 Identities = 124/382 (32%), Positives = 188/382 (48%), Gaps = 36/382 (9%)

Query: 78  VTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGCYKQKSPMFEPLSSKTFNP 137
           +T  +G+Y M + +G+PP     ++DTGSDL W QC PC+ C+ Q    ++P +S +F  
Sbjct: 107 MTLGSGEYFMDVLVGTPPKHFSLILDTGSDLNWLQCLPCYDCFHQNGMFYDPKTSASFKN 166

Query: 138 IPCDSEQCGSLFSH----SC-SPQKLCAYSYSYADSSVTKGVLARETITFSSPT---NGD 189
           I C+  +C  + S      C S  + C Y Y Y D S T G  A ET T +  T      
Sbjct: 167 ITCNDPRCSLISSPDPPVQCESDNQSCPYFYWYGDRSNTTGDFAVETFTVNLTTTEGGSS 226

Query: 190 ELVVGDIIFGCGHSNSGAFNENDMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADS 249
           E  VG+++FGCGH N G F+    G++GLG GPLS  SQ+ +LYG   FS CLV  ++++
Sbjct: 227 EYKVGNMMFGCGHWNRGLFS-GASGLLGLGRGPLSFSSQLQSLYG-HSFSYCLVDRNSNT 284

Query: 250 RTSGTISFGDASD-VSGEGVVTTPLVS---EEGQTPYLVTLEGISVGDTFV-----SFNS 300
             S  + FG+  D ++   +  T  V+      +T Y + ++ I VG   +     ++N 
Sbjct: 285 NVSSKLIFGEDKDLLNHTNLNFTSFVNGKENSVETFYYIQIKSILVGGKALDIPEETWNI 344

Query: 301 SEKLSKGNMMIDSGTPATYLPQEFYD----RLVEELKVQSSLLPVDND-PDLGTQLCYR- 354
           S     G  +IDSGT  +Y  +  Y+    +  E++K      P+  D P L    C+  
Sbjct: 345 SSD-GDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKMKEN---YPIFRDFPVLDP--CFNV 398

Query: 355 ---SETNLEGPILTAHFEGADVQLMPIQ-TFIPPKDGVFCFAMAGTADGDY-IFGNFAQS 409
               E N+  P L   F    V   P + +FI   + + C A+ GT    + I GN+ Q 
Sbjct: 399 SGIEENNIHLPELGIAFVDGTVWNFPAENSFIWLSEDLVCLAILGTPKSTFSIIGNYQQQ 458

Query: 410 NILIGFDLDRKTISFKPTDCTN 431
           N  I +D  R  + F PT C +
Sbjct: 459 NFHILYDTKRSRLGFTPTKCAD 480


>At3g25700 unknown protein
          Length = 452

 Score =  156 bits (395), Expect = 2e-38
 Identities = 129/458 (28%), Positives = 195/458 (42%), Gaps = 44/458 (9%)

Query: 8   FHLCFLVVLYLL--SCQTPIEAQDAGFSVQLTRQNSPHSPFYKPDN---LHRHKLPSFHQ 62
           F LC  + L+LL  S    +   +    + L R+    SPF  P     L   +L     
Sbjct: 6   FFLCSFLSLFLLPPSNIAAVSNHNKYLKLPLLRK----SPFPSPTQALALDTRRLHFLSL 61

Query: 63  VPKKAFAPNGPFSTRVTSNNGDYLMKLTLGSPPVDIYGLVDTGSDLVWAQCSPCHGC-YK 121
             K       P  +   S +G Y + L +G PP  +  + DTGSDLVW +CS C  C + 
Sbjct: 62  RRKPIPFVKSPVVSGAASGSGQYFVDLRIGQPPQSLLLIADTGSDLVWVKCSACRNCSHH 121

Query: 122 QKSPMFEPLSSKTFNPIPCDSEQCGSLFSHSCSP-------QKLCAYSYSYADSSVTKGV 174
             + +F P  S TF+P  C    C  +     +P          C Y Y YAD S+T G+
Sbjct: 122 SPATVFFPRHSSTFSPAHCYDPVCRLVPKPDRAPICNHTRIHSTCHYEYGYADGSLTSGL 181

Query: 175 LARETITFSSPTNGDELVVGDIIFGC-----GHSNSGAFNENDMGVIGLGGGPLSLVSQM 229
            ARET +  + ++G E  +  + FGC     G S SG       GV+GLG GP+S  SQ+
Sbjct: 182 FARETTSLKT-SSGKEARLKSVAFGCGFRISGQSVSGTSFNGANGVMGLGRGPISFASQL 240

Query: 230 GALYGSRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVVTTPLVSEEGQTPYLVTLEGI 289
           G  +G+ +FS CL+ +      +  +  G+  D   +   T  L +    T Y V L+ +
Sbjct: 241 GRRFGN-KFSYCLMDYTLSPPPTSYLIIGNGGDGISKLFFTPLLTNPLSPTFYYVKLKSV 299

Query: 290 SVGDTFVSFNSS----EKLSKGNMMIDSGTPATYLPQEFYDRLVEELKVQSSLLPVDNDP 345
            V    +  + S    +    G  ++DSGT   +L +  Y  ++  ++ +   LP+ +  
Sbjct: 300 FVNGAKLRIDPSIWEIDDSGNGGTVVDSGTTLAFLAEPAYRSVIAAVR-RRVKLPIADAL 358

Query: 346 DLGTQLCYRSETNLEG--------PILTAHFEGADVQLMPIQT-FIPPKDGVFCFAMAGT 396
             G  LC     N+ G        P L   F G  V + P +  FI  ++ + C A+   
Sbjct: 359 TPGFDLC----VNVSGVTKPEKILPRLKFEFSGGAVFVPPPRNYFIETEEQIQCLAIQSV 414

Query: 397 AD--GDYIFGNFAQSNILIGFDLDRKTISFKPTDCTNP 432
               G  + GN  Q   L  FD DR  + F    C  P
Sbjct: 415 DPKVGFSVIGNLMQQGFLFEFDRDRSRLGFSRRGCALP 452


>At5g10770 nucleoid DNA-binding protein cnd41 - like protein
          Length = 474

 Score =  153 bits (386), Expect = 2e-37
 Identities = 132/404 (32%), Positives = 182/404 (44%), Gaps = 34/404 (8%)

Query: 38  RQNSPHSPFYKPDNLHRHKLPSFHQVPKKAFAPNGPFSTRVTSNNGDYLMKLTLGSPPVD 97
           R NS HS   K       KL + H    K+   + P     T  +G+Y++ + LG+P  D
Sbjct: 94  RVNSIHSKLSK-------KLATDHVSESKS--TDLPAKDGSTLGSGNYIVTVGLGTPKND 144

Query: 98  IYGLVDTGSDLVWAQCSPC-HGCYKQKSPMFEPLSSKTFNPIPCDSEQCGSLFS-----H 151
           +  + DTGSDL W QC PC   CY QK P+F P  S ++  + C S  CGSL S      
Sbjct: 145 LSLIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKSTSYYNVSCSSAACGSLSSATGNAG 204

Query: 152 SCSPQKLCAYSYSYADSSVTKGVLARETITFSSPTNGDELVVGDIIFGCGHSNSGAFNEN 211
           SCS    C Y   Y D S + G LA+E  T    TN D  V   + FGCG +N G F   
Sbjct: 205 SCSASN-CIYGIQYGDQSFSVGFLAKEKFTL---TNSD--VFDGVYFGCGENNQGLFT-G 257

Query: 212 DMGVIGLGGGPLSLVSQMGALYGSRRFSQCLVPFHADSRTSGTISFGDASDVSGEGVVTT 271
             G++GLG   LS  SQ    Y ++ FS CL    + +  +G ++FG A       V  T
Sbjct: 258 VAGLLGLGRDKLSFPSQTATAY-NKIFSYCL---PSSASYTGHLTFGSAG--ISRSVKFT 311

Query: 272 PLVS-EEGQTPYLVTLEGISVGDTFVSFNSSEKLSKGNMMIDSGTPATYLPQEFYDRLVE 330
           P+ +  +G + Y + +  I+VG   +   S+   S    +IDSGT  T LP + Y  L  
Sbjct: 312 PISTITDGTSFYGLNIVAITVGGQKLPIPST-VFSTPGALIDSGTVITRLPPKAYAALRS 370

Query: 331 ELKVQSSLLPVDNDPD-LGTQLCYRSETNLEGPILTAHFE-GADVQLMPIQTFIPPKDGV 388
             K + S  P  +    L T         +  P +   F  GA V+L     F   K   
Sbjct: 371 SFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQ 430

Query: 389 FCFAMAGTADGD--YIFGNFAQSNILIGFDLDRKTISFKPTDCT 430
            C A AG +D     IFGN  Q  + + +D     + F P  C+
Sbjct: 431 VCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 474


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,651,025
Number of Sequences: 26719
Number of extensions: 499401
Number of successful extensions: 1445
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 90
length of query: 432
length of database: 11,318,596
effective HSP length: 102
effective length of query: 330
effective length of database: 8,593,258
effective search space: 2835775140
effective search space used: 2835775140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)