BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.1
         (134 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g49980 unknown protein                                             158  7e-40
At5g44750 unknown protein                                              31  0.17
At5g44740 translesion synthesis polymerase RAD30 like protein          30  0.49
At3g63150 rac-GTP binding protein like                                 27  4.2

>At1g49980 unknown protein
          Length = 795

 Score =  158 bits (400), Expect = 7e-40
 Identities = 82/127 (64%), Positives = 99/127 (77%), Gaps = 3/127 (2%)

Query: 8   RRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFG 67
           +RILELEA+RDLS  WL  +MD FYAAVETLS+P+  GK MAVG +SMIST++++ARKFG
Sbjct: 90  KRILELEATRDLSRIWLHVDMDAFYAAVETLSDPSIKGKPMAVGGLSMISTANYEARKFG 149

Query: 68  VRSAIPKFIAHK*CPELIFVPRDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDK 127
           VR+A+P FIA K CP+LIFVP DF K+   S    L   V + YDP+FIAGSLD AYLD 
Sbjct: 150 VRAAMPGFIARKLCPDLIFVPVDFTKYTHYSD---LTRKVFRNYDPHFIAGSLDEAYLDI 206

Query: 128 TEVCKER 134
           TEVC+ER
Sbjct: 207 TEVCRER 213


>At5g44750 unknown protein
          Length = 955

 Score = 31.2 bits (69), Expect = 0.17
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 29  DVFYAAVETLSNPTFNGKAMAV------GSMSMISTSSHKARKFGVRSAIPKFIAHK*CP 82
           D F+ +V   +    + K +AV         + IS++++ AR +GV++ +    A   CP
Sbjct: 329 DCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRHAKDLCP 388

Query: 83  ELIFVPRDFKKH 94
           +L+ VP +F+ +
Sbjct: 389 QLVIVPYNFEAY 400


>At5g44740 translesion synthesis polymerase RAD30 like protein
          Length = 672

 Score = 29.6 bits (65), Expect = 0.49
 Identities = 31/114 (27%), Positives = 48/114 (41%), Gaps = 8/114 (7%)

Query: 27  EMDVFYAAVETLSNPTFNGKAMAVGSMSM-----ISTSSHKARKFGVRSAIPKFIAHK*C 81
           +MD FY  VE    P   G   AV   +      +   S++ARK GV+ ++    A   C
Sbjct: 18  DMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRGDEAKAAC 77

Query: 82  P--ELIFVP-RDFKKHM*ISRSIYLLLSVLQRYDPNFIAGSLDGAYLDKTEVCK 132
           P  +L+ VP    K  + + RS    +  +          S+D  YLD T+  +
Sbjct: 78  PQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASIDEVYLDLTDAAE 131


>At3g63150 rac-GTP binding protein like
          Length = 643

 Score = 26.6 bits (57), Expect = 4.2
 Identities = 13/41 (31%), Positives = 22/41 (52%)

Query: 3   MASCYRRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTF 43
           M+   +   E+E   + S+  L+   DVFY A + + +PTF
Sbjct: 142 MSPIMKEYREIETCIECSALTLIQVPDVFYFASKAVLHPTF 182


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.333    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,597,257
Number of Sequences: 26719
Number of extensions: 83577
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 4
length of query: 134
length of database: 11,318,596
effective HSP length: 88
effective length of query: 46
effective length of database: 8,967,324
effective search space: 412496904
effective search space used: 412496904
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 54 (25.4 bits)