BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0545.3
(2087 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 682 0.0
At3g31530 hypothetical protein 427 e-119
At2g15410 putative retroelement pol polyprotein 355 2e-97
At2g13330 F14O4.9 309 1e-83
At2g14400 putative retroelement pol polyprotein 272 1e-72
At2g15100 putative retroelement pol polyprotein 249 1e-65
At1g37200 hypothetical protein 238 3e-62
At2g14380 putative retroelement pol polyprotein 237 6e-62
At2g10780 pseudogene 231 4e-60
At4g03800 222 2e-57
At4g10580 putative reverse-transcriptase -like protein 220 8e-57
At2g04670 putative retroelement pol polyprotein 219 1e-56
At3g11970 hypothetical protein 211 3e-54
At1g36590 hypothetical protein 211 3e-54
At2g14650 putative retroelement pol polyprotein 211 4e-54
At2g07660 putative retroelement pol polyprotein 211 5e-54
At1g35370 hypothetical protein 200 6e-51
At2g13230 pseudogene 196 2e-49
At1g37060 Athila retroelment ORF 1, putative 192 1e-48
At2g06890 putative retroelement integrase 177 6e-44
>At1g20390 hypothetical protein
Length = 1791
Score = 682 bits (1761), Expect = 0.0
Identities = 394/1093 (36%), Positives = 594/1093 (54%), Gaps = 30/1093 (2%)
Query: 1003 EEVDLGDGLEKRPTYISALIDPELKDRMVKLLKEFKDCFAWDYDEMPGLNRELVELKLPI 1062
E V++ + R + A I P ++ ++ LLK FAW ++M G++ + +L +
Sbjct: 712 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 771
Query: 1063 KEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVC 1122
KPVKQ R+ P+ + EE+E+LLK I +Y +WLAN V V KKNGK RVC
Sbjct: 772 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 831
Query: 1123 IDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCP 1182
+D+ DLN A PKD Y +P + +V++ +G+ LS +D +SGYNQI + +D KT+F
Sbjct: 832 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 891
Query: 1183 GALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGH 1242
GTY + VM FGLKNAG ATYQR +N + D I ++VYIDD++VKS + H
Sbjct: 892 R--GTYCYKVMSFGLKNAG-----ATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDH 944
Query: 1243 LLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTS 1302
+ HL K F+ + YG+K+NP KC FGV +G+FLG+VV K+GIE N + +AIL+ P +
Sbjct: 945 VEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRN 1004
Query: 1303 KKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNP 1362
+++Q L G+I L RFI+ ++K F +LL+ + + F W+ + ++AF++LK YLS P
Sbjct: 1005 AREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQ--FDWDKDSEEAFEKLKDYLSTP 1062
Query: 1363 PVMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAETRYTMIEKLC 1422
P+++ P G + LYI+ +D + S+L +ED G +R IFY S+ L AETRY +IEK
Sbjct: 1063 PILVKPEVGETLYLYIAVSDHAVSSVLVREDR-GEQRPIFYTSKSLVEAETRYPVIEKAA 1121
Query: 1423 LCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKA 1482
L + S KL+ Y + + V + + + L P R+ KWA+ L+EY + + P A
Sbjct: 1122 LAVVTSARKLRPYFQSHTIAVLTDQPL-RVALHSPSQSGRMTKWAVELSEYDIDFRPRPA 1180
Query: 1483 IKGQAVADFLADHTVPKEIVTYVGI--QPWKLYFDGSSHKNGTGIGMFIMSPQGAPTKFK 1540
+K Q +ADFL + + G + W LY DGSS G+GIG+ ++SP +
Sbjct: 1181 MKSQVLADFLIELPLQSAERAVSGNRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQS 1240
Query: 1541 FRIEGNCSNNEVEYEALISGLEILLALGAKNVVIKGDSELVVKQLTKEYKCVSEHLAKYY 1600
FR+ +NN EYE LI+GL + + + DS+L+ QL+ EY+ +E + Y
Sbjct: 1241 FRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYL 1300
Query: 1601 VKANNLLAKFNEIGIGHVPRIENQEANELAQIASGYMVDKLKLTELIKIKEKLSPSDLDI 1660
+ F + +PR +N A+ LA +A D ++ + I + S +
Sbjct: 1301 KIVQLMTKDFENFKLSKIPRGDNAPADALAALALTSDSDLRRIIPVESIDKPSIDSTDAV 1360
Query: 1661 MCIDNLTSN---------DWRKPIVEYLQNPVGSTD----RKVKYRALSYTILGNELFKK 1707
++ + S+ DWR I +YL + +D R+++ +A YT++ L K
Sbjct: 1361 EIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLPSDKWTARRLRIKAAKYTLMKEHLLKV 1420
Query: 1708 NINGTLLKCLSENDAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARG 1767
+ G +L CL + + H+G G H G + L + G YWPT++ DC +
Sbjct: 1421 SAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAK 1480
Query: 1768 CQDCQKHSGIQHVPASELHSIIKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWV 1827
C+ CQ+H+ H P L + + P+PF WA+D++G + +S+Q ++I+V DYFTKWV
Sbjct: 1481 CEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPM--PASRQKRFILVMTDYFTKWV 1538
Query: 1828 EAIPLQNVTQETVIEFIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTP 1887
EA + V F+ I+ R GLP I TD G+ F+ F SW I+L STP
Sbjct: 1539 EAESYATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTP 1598
Query: 1888 YYAQANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYG 1947
Y Q NGQ EA NK ++S +KK + K W + L VLW+YR +P AT TPF AYG
Sbjct: 1599 RYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYG 1658
Query: 1948 QEAVLPAEVYLQSCRIQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRIAKAY 2007
EA+ PAEV S R + P E+ MMLD + +L+E R AL + + AK Y
Sbjct: 1659 MEAMAPAEVGYSSLRRSMMVKNP-ELNDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHY 1717
Query: 2008 NKKVRDRSFITGDYVWKVILPMDKKDRVYGKWTPNWEGPFTVEKTLPNNAYVIKELGNQR 2067
N+KV +R F GD V + + + GK NWEG + V K + Y + +
Sbjct: 1718 NQKVHNRHFDVGDLVLRKVFENTAEINA-GKLGANWEGSYQVSKIVRPGDYELLTMSGTA 1776
Query: 2068 QCVTINGKYLKAY 2080
T N +LK Y
Sbjct: 1777 VPRTWNSMHLKRY 1789
>At3g31530 hypothetical protein
Length = 831
Score = 427 bits (1099), Expect = e-119
Identities = 273/833 (32%), Positives = 404/833 (47%), Gaps = 117/833 (14%)
Query: 1172 EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDD 1231
ED KTAF + Y VMPFGLKNAG ATY+R +N IF I M+VYIDD
Sbjct: 99 EDQEKTAFYTEQGIFCYR--VMPFGLKNAG-----ATYERFVNKIFALQIGKTMEVYIDD 151
Query: 1232 IVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKA 1291
++VKS + H+ HLR+ F+++ Y +K+NP KC FGV + GIE N +
Sbjct: 152 MLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGV-----------RSGIEANPKQI 200
Query: 1292 KAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKA 1351
+A+L + P +K+++Q L G++ L RFI+ +EK +F +LR K+ F W ++A
Sbjct: 201 EALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKK--FEWTTRCEEA 258
Query: 1352 FDELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGA 1411
F ELKKYL+ PP++ P+ G P LY++ +D + L +ED G ++ IFY+S+ A
Sbjct: 259 FQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDR-GEQKLIFYVSQTFTSA 317
Query: 1412 ETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALT 1471
E+RY +EKL L + S KL+ Y + ++V ++ +L P R+ KW + L+
Sbjct: 318 ESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSMP-LRVILHSPSQSGRLAKWTIELS 376
Query: 1472 EYSLTYAPLKAIKGQAVADFLADHTVPKEIVTYVGIQPWKLYFDGSSHKNGTGIGMFIMS 1531
EY + Y K Q +ADF+ + KE W L+ DGSS K G+G+G+ + S
Sbjct: 377 EYDIEYQNKTCAKSQVLADFIVE-LPTKEARENPLDTTWLLHVDGSSSKQGSGVGIRLTS 435
Query: 1532 PQGAPTKFKFRIEGNCSNNEVEYEALISGLEILLALGAKNVVIKGDSELVVKQLTKEYKC 1591
P G T NN EYEAL++GL + L DS+L+ Q EY
Sbjct: 436 PTGEAT-----------NNVAEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTT 484
Query: 1592 VSEHLAKYYVKANNLLAKFNEIGIGHVPRIENQEANELAQIASGYMVDKLKLTELIKIKE 1651
+ + Y + NL F+E + +PR EN A+ LA +AS L +I ++
Sbjct: 485 QDKKMEAYLIHVQNLAKNFDEFELTRIPRGENTSADALAALAS---TSDTSLKRVIPVEF 541
Query: 1652 KLSPS-----DLDIMCIDNLTSND--------WRKPIVEYLQNPVGSTD----RKVKYRA 1694
PS + ++ I D W +PI+ Y+ +D RK+K +A
Sbjct: 542 IEKPSIELGKEEHVLPIQISADQDDPDDCNSEWMEPIISYISEGKLPSDKWKARKLKAQA 601
Query: 1695 LSYTILGNELFKKNINGTLLKCLSENDAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYW 1754
+ ++ +L+K ++G L+ C+ + H G
Sbjct: 602 ARFVLVDTKLYKWRLSGPLMTCVEAEAICKIMKEIHSG---------------------- 639
Query: 1755 PTIMKDCIEYARGCQDCQKHSGIQHVPASELHSIIKPWPFRGWAIDLIGEIHPASSKQHK 1814
H+ H PA L SI P+PF W++D+IG +HP SKQ K
Sbjct: 640 ------------------SHAPTIHQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKK 679
Query: 1815 YIIVAVDYFTKWVEAIPLQNVTQETVIEFIQNHIVYRFGLPESITTDQGTVFVGRKVAAF 1874
++V DYF+KW+EA ++ V F+ HI+ R G+P I TD G+ F+ + F
Sbjct: 680 LVLVLTDYFSKWIEAESYASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGF 739
Query: 1875 AESWGIKLLTSTPYYAQANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPT 1934
+ WGI+L STP Y Q NGQ EAAN+ L VLW +R +P
Sbjct: 740 CDKWGIRLSKSTPRYPQGNGQAEAANE--------------------LEGVLWLHRTTPR 779
Query: 1935 EATGTTPFRLAYGQEAVLPAEVYLQSCRIQRQEEIPSEVYWNMMLDEMVNLDE 1987
AT TPF YG E V+PAE+ + S R E + LDE+ +DE
Sbjct: 780 RATRETPFASIYGTECVIPAEMIVPSLRRSLSPENDPD-NTQTPLDELDLIDE 831
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 355 bits (911), Expect = 2e-97
Identities = 216/631 (34%), Positives = 328/631 (51%), Gaps = 69/631 (10%)
Query: 1004 EVDLGDGLEKRPTYISALIDPELKDRMVKLLKEFKDCFAWDYDEMPGLNRELVELKLPIK 1063
+V++ + R I + EL++ +V L++ FAW ++MPG++ + +L +
Sbjct: 718 QVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVD 777
Query: 1064 EDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCI 1123
KP+KQ R+ PD + EE+++LL I RY DWL N V V KKNGK RVCI
Sbjct: 778 PTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCI 837
Query: 1124 DFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPG 1183
DF DLN A PKD + +P + +V++ AG+E LS +D +SGYNQI + D KT F
Sbjct: 838 DFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQ 897
Query: 1184 ALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHL 1243
GTY + VMPFGLKNAG ATY R++N +F D ++ M+VYIDD++VKS + H+
Sbjct: 898 --GTYCYKVMPFGLKNAG-----ATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHI 950
Query: 1244 LHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSK 1303
HLR+ F+ + +Y +K+NP KC FGV +G+FLG++V ++GIE N + AI+D P +
Sbjct: 951 THLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNT 1010
Query: 1304 KQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPP 1363
+++Q L+G+I L RFI+ ++K F LLR K F W+ + +
Sbjct: 1011 REVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKR--FEWDEKCE-------------- 1054
Query: 1364 VMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCL 1423
+G + LYI+ + + +L +ED G + IFY+S+ L+GAE RY +EKL
Sbjct: 1055 ------EGETLYLYIAVSTSAVSGVLVREDR-GEQHPIFYVSKTLDGAELRYPTLEKLAF 1107
Query: 1424 CLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAI 1483
+ S KL+ Y K V V ++ ++ +L P R+ KWA+ L+EY + Y
Sbjct: 1108 AVVISARKLRPYFKSYTVEVLTNQP-LRTILHSPSQSGRLAKWAVELSEYDIAYKNRTCA 1166
Query: 1484 KGQAVADFLADHTVPKEIVTYVGIQPWKLYFDGSSHKNGTGIGMFIMSPQGAPTKFKFRI 1543
K H P +P++ + P +
Sbjct: 1167 K---------SHRAP--------TRPYR---------------------RSIPCRKVDLA 1188
Query: 1544 EGNCSNNEVEYEALISGLEILLALGAKNVVIKGDSELVVKQLTKEYKCVSEHLAKYYVKA 1603
SNNE EYEALI+GL + + K + DS+LV Q + Y+ +E + Y
Sbjct: 1189 RFPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVV 1248
Query: 1604 NNLLAKFNEIGIGHVPRIENQEANELAQIAS 1634
L F + +PR +N A+ LA +AS
Sbjct: 1249 RELSYNFEVFELTKIPRSDNAPADALAVLAS 1279
Score = 259 bits (661), Expect = 2e-68
Identities = 142/421 (33%), Positives = 216/421 (50%), Gaps = 8/421 (1%)
Query: 1664 DNLTSNDWRKPIVEYLQNPVGSTD----RKVKYRALSYTILGNELFKKNINGTLLKCLSE 1719
D+ S +W + I Y+ + + D R+++ R+ YT+ L + + G LL CL +
Sbjct: 1369 DSPASTNWIEEIRSYIADRIVPKDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDD 1428
Query: 1720 NDAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQH 1779
+A + H+G G H G + + + G YWPT+ DC ++ C+ CQ H+ H
Sbjct: 1429 EEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIH 1488
Query: 1780 VPASELHSIIKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVTQET 1839
+P+ L + + P+PF WA+D+I +S+Q KYI+V DYFTKW EA + +
Sbjct: 1489 IPSEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARIQSKE 1546
Query: 1840 VIEFIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQVEAA 1899
V F+ +I+ GLP I TD GT F + F W I+L STP Y Q NGQ EA
Sbjct: 1547 VQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEAT 1606
Query: 1900 NKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEAVLPAEVYLQ 1959
NK ++ +KK + K W + L VLW+YR +P +T TPF L YG EA+ P E L
Sbjct: 1607 NKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLP 1666
Query: 1960 SCRIQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRIAKAYNKKVRDRSFITG 2019
+ R P+ + M+LD + L+E+R AL + + AK YNKKV++R F G
Sbjct: 1667 TVRRSMLINDPT-LNDQMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEG 1725
Query: 2020 DYVWKVILPMDKKDRVYGKWTPNWEGPFTVEKTLPNNAYVIKELGNQRQCVTINGKYLKA 2079
D V + + + ++ GK +WEGP+ + K + Y + + + N LK
Sbjct: 1726 DLVLRKVFE-NTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLKR 1784
Query: 2080 Y 2080
Y
Sbjct: 1785 Y 1785
>At2g13330 F14O4.9
Length = 889
Score = 309 bits (791), Expect = 1e-83
Identities = 187/524 (35%), Positives = 280/524 (52%), Gaps = 46/524 (8%)
Query: 1113 IKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*E 1172
++KNGK RVCIDFRDLN A PKD + +P + +V++ HE LS +D + GYNQI + +
Sbjct: 288 LEKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRD 347
Query: 1173 DVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDI 1232
KTAF GTY + VMPFGLKNAG TYQR++N +F D + ++VYIDD+
Sbjct: 348 GQEKTAFITDR--GTYYYKVMPFGLKNAG-----TTYQRLVNRMFVDQLGKTIEVYIDDM 400
Query: 1233 VVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAK 1292
+VKS H+ LR+ F+ + K+ +K+NP KC+F V + +FL ++V ++GIE N +
Sbjct: 401 LVKSAHEKDHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIA 460
Query: 1293 AILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAF 1352
A ++ P +++Q L G+I L FI+ + K F LR KE F W + ++AF
Sbjct: 461 AFIEMPSPKMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKE--FDWNKDCEQAF 518
Query: 1353 DELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAE 1412
+LK YL+ PP++ P KG P+ LY + +
Sbjct: 519 KQLKAYLTEPPILAKPEKGEPLYLYTNR-------------------------------D 547
Query: 1413 TRYTMIEKLCLCLYFSCVKLKYYIK--PIDVMVFSHYDIIKHMLSKPILHSRIGKWALAL 1470
R +EKL L + S KL+ Y + PI VM I H L++ R+ KWA+ L
Sbjct: 548 KRCPAMEKLALTVVMSVRKLRLYFQSHPIVVMTSQPIRTILHSLTQS---GRLAKWAIEL 604
Query: 1471 TEYSLTYAPLKAIKGQAVADFLADHTVPKEIVTYVGIQPWKLYFDGSSHKNGTGIGMFIM 1530
EY + Y ++K Q +ADF+ + T + W L+ DGSS++ G+G+G+ +
Sbjct: 605 REYDIEYRTRTSLKAQVLADFVIKLPLADLDGTNSN-KKWLLHVDGSSNRQGSGVGIQLT 663
Query: 1531 SPQGAPTKFKFRIEGNCSNNEVEYEALISGLEILLALGAKNVVIKGDSELVVKQLTKEYK 1590
SP G + ++ N SNNE EYEALI+G+++ G + + DS+LV Q EY+
Sbjct: 664 SPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYSDSQLVTSQFHGEYE 723
Query: 1591 CVSEHLAKYYVKANNLLAKFNEIGIGHVPRIENQEANELAQIAS 1634
E + Y L +F + +PR EN A+ LA +AS
Sbjct: 724 AKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
Score = 32.0 bits (71), Expect = 3.9
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 990 VDVSKKMEAQDPLEEVDLGDGLEKRPTYISALIDPELKDRMVKLLKEFKDCFAWDYDEMP 1049
+D S++ + + +V + + KR I +D +++ ++ LKE KD FAW +
Sbjct: 225 LDPSQRGTRKSLITQVCIDESDPKRCVGIGHDLDLTVREDLITFLKENKDSFAWSSANLQ 284
Query: 1050 GLNRE 1054
G++ E
Sbjct: 285 GISLE 289
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 272 bits (696), Expect = 1e-72
Identities = 139/321 (43%), Positives = 209/321 (64%), Gaps = 10/321 (3%)
Query: 1084 IKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAE 1143
+ +E+++LLK IR +Y DWLAN V V KKNGK RVCIDF DLN A PKD + +P +
Sbjct: 480 VNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHID 539
Query: 1144 MMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLK 1203
+V+S AG+E LS +D +SGYNQI + ED KT F G Y + VMPFGL+NAG
Sbjct: 540 RLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDR--GIYCYKVMPFGLRNAG-- 595
Query: 1204 NAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPL 1263
ATY R++N +F + + M+VYIDD+++KS ++ H+ HL + F + +Y +K+NP
Sbjct: 596 ---ATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPA 652
Query: 1264 KCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNL 1323
KC FGV +G+FLG++V K+GIE N N+ A L+ P + K++Q L G+I L RFI+
Sbjct: 653 KCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFISRS 712
Query: 1324 SEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDE 1383
++K+ F +L+ KE F W+ + ++AF +LK YL++PPV+ P + LY+S ++
Sbjct: 713 TDKSLPFYQILKGNKE--FLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNH 770
Query: 1384 TIGSMLAQEDEDGNERAIFYL 1404
+ +L +ED G ++ I+Y+
Sbjct: 771 AVSGVLIREDR-GEQKPIYYI 790
Score = 224 bits (572), Expect = 3e-58
Identities = 151/524 (28%), Positives = 244/524 (45%), Gaps = 86/524 (16%)
Query: 1580 LVVKQLTKEYKCVSEHLAKYYVKANNLLAKFNEIGIGHVPRIENQEANELAQIASGY--M 1637
++V Q +Y+ + Y +L F + + +PR +N A+ LA +AS
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1638 VDKLKLTELIKIKEKLSPSDLDIMCIDNLTSNDWRKPIVEY-----------------LQ 1680
V+ + E I + + ++ + D VE +Q
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPPVKRRKSKEATVPKPAVQ 909
Query: 1681 NPVGS-------TDRKVKYRALSYT---ILG----------NELFKKNINGTLLKCLSEN 1720
+G +D K++ + IL N L+++ ++ L +
Sbjct: 910 ENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLSIFGP 969
Query: 1721 DAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQHV 1780
+ +S H+GLCG+H +G M + + + YWPT++ DC++YA+ C+ CQ H+ + H
Sbjct: 970 VVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAPLIHQ 1029
Query: 1781 PASELHSIIKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVTQETV 1840
P+ SI P+PF W++D+IG +H S++ +Y++V DYF+KW+EA
Sbjct: 1030 PSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEA----------- 1077
Query: 1841 IEFIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQVEAAN 1900
A +WGIK+ ST Y Q NGQ EAAN
Sbjct: 1078 -------------------------------EAILLNWGIKVSYSTLRYPQGNGQAEAAN 1106
Query: 1901 KILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEAVLPAEVYLQS 1960
K ++S +KK + W++ L VLWAYR +P +TG TPF L YG +AV+PAE+ +
Sbjct: 1107 KTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAELNVPG 1166
Query: 1961 CRIQRQEEIPSEVYWNMMLDEMVN-LDEERLLALDVLTRQKDRIAKAYNKKVRDRSFITG 2019
R R E +E + MLD+ ++ ++E R AL + + A+ YN KV+ R F G
Sbjct: 1167 LR--RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPFFVG 1224
Query: 2020 DYVWKVILPMDKKDRVYGKWTPNWEGPFTVEKTLPNNAYVIKEL 2063
DYV K + +KK+ GK NWEGP+ V + + N Y +K+L
Sbjct: 1225 DYVLKRVFD-NKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDL 1267
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 249 bits (636), Expect = 1e-65
Identities = 162/550 (29%), Positives = 245/550 (44%), Gaps = 74/550 (13%)
Query: 1588 EYKCVSEHLAKYYVKANNLLAKFNEIGIGHVPRIENQEANELAQIASGYMVD-------- 1639
EY+ + Y + +F + + +PR EN AN LA +AS + V
Sbjct: 795 EYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEVTLPRVIPVE 854
Query: 1640 -----KLKLTELIKIKEKLSPSDLDIMCIDN-------------------------LTSN 1669
++L E+ + + LD +N L N
Sbjct: 855 TISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEIVENQSLPDN 914
Query: 1670 ---------------DWRKPIVEYLQNPVGSTD----RKVKYRALSYTILGNELFKKNIN 1710
DWR+PI +Y+ N + RK+K + I + L+++ +
Sbjct: 915 HNAPLPDQPPHDWGADWREPIRDYILNGTLPAEKWAARKLKATCARFCIANDILYRRIFS 974
Query: 1711 GTLLKCLSENDAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQD 1770
C+ + HDG CG H G + + + + G YWPT++ DC YAR C+
Sbjct: 975 APDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQ 1034
Query: 1771 CQKHSGIQHVPASELHSIIKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAI 1830
CQKH+ + PA L ++ P+PF W +D++G +H + T+ VEA
Sbjct: 1035 CQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS---------------TRGVEAA 1079
Query: 1831 PLQNVTQETVIEFIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYA 1890
N+T V FI I+ R GLP I TD G+ F+ + F E W I+L STP Y
Sbjct: 1080 AYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYP 1139
Query: 1891 QANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEA 1950
Q NGQ EA NK +IS +KK + W L VLWA R +P AT TPF L YG EA
Sbjct: 1140 QGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFSLIYGMEA 1199
Query: 1951 VLPAEVYLQSCRIQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRIAKAYNKK 2010
V+PAE+ + S R R + +E M++D + +DE R AL + + A+ YN
Sbjct: 1200 VIPAEIKVPSARRIRNPQNETENN-EMIIDVIDTIDERRNRALARMQNYHNAGARYYNSN 1258
Query: 2011 VRDRSFITGDYVWKVILPMDKKDRVYGKWTPNWEGPFTVEKTLPNNAYVIKELGNQRQCV 2070
VR+RSF G V + + +K ++ GK +WEGP+ + + N Y + + +
Sbjct: 1259 VRNRSFEVGTLVLRRV-QQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINMEGKTVRR 1317
Query: 2071 TINGKYLKAY 2080
N +LK +
Sbjct: 1318 AWNSMHLKRF 1327
Score = 137 bits (345), Expect = 7e-32
Identities = 73/154 (47%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Query: 1047 EMPGLNRELVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWL 1106
+M G++ E++ +L + KPVKQ R+ PD + E+ RLL+ IR +Y +WL
Sbjct: 411 KMTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWL 470
Query: 1107 ANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQ 1166
AN V V KKNGK RVC+DF DLN A KD + +P + +V+S GHE LS +D +SGYNQ
Sbjct: 471 ANPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQ 530
Query: 1167 IFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNA 1200
I + ED KT+F GTY + VMPFGLKNA
Sbjct: 531 ILMNPEDQEKTSFIT--ECGTYYYKVMPFGLKNA 562
Score = 72.0 bits (175), Expect = 3e-12
Identities = 42/136 (30%), Positives = 74/136 (53%), Gaps = 9/136 (6%)
Query: 1342 FRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAI 1401
F W ++AF +LK+YLS P V+ G + LYI+ ++ + + + E ++R I
Sbjct: 629 FIWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRV-ERSDKRPI 687
Query: 1402 FYLSRVLNGAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHS 1461
FY+ +TRY M+EKL L + + KL+ Y + ++V + ++ +L P
Sbjct: 688 FYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSLP-LRTILHSPTQSG 739
Query: 1462 RIGKWALALTEYSLTY 1477
R+GKWA+ L+E+ L +
Sbjct: 740 RLGKWAIELSEFDLEF 755
>At1g37200 hypothetical protein
Length = 1564
Score = 238 bits (607), Expect = 3e-62
Identities = 146/420 (34%), Positives = 233/420 (54%), Gaps = 19/420 (4%)
Query: 991 DVSKKMEAQDPLEEVDLGDGLEKRPTYISALIDPELKDRMVKLLKEFKDCFAWDYDEMPG 1050
D S+ + + +V + + K+ + +DP +++ + LKE KD FAW + G
Sbjct: 608 DPSQCGPQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANLQG 667
Query: 1051 LNRELVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVV 1110
++ E+ +L + +P+KQ R+ P+ +++E++RLLK IR +Y DWLAN V
Sbjct: 668 ISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLANPV 727
Query: 1111 PVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA 1170
V KNGK RVCIDF DLN A PKD + +P + +V + AGHE LS +D +SGYNQI +
Sbjct: 728 VVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMR 787
Query: 1171 *EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYID 1230
+D KTAF T + VMPF GLKN GATYQR++N +F D + M++YID
Sbjct: 788 PDDQEKTAFI------TDCYKVMPF-----GLKNTGATYQRLVNRMFADQLGKTMELYID 836
Query: 1231 DIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNK 1290
D++VKS HL LR+ F+ + K+ +K+NP KC+FGV +G+FLG++V ++GIE N +
Sbjct: 837 DMLVKSAHEKDHLPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPKQ 896
Query: 1291 AKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQK 1350
A +D P + + R + +K + S + E +R +
Sbjct: 897 IAAFIDMPSPKMARDRPYRRPQQVIYRAPPDHEGQKPIYYVSKTLIDAETHYRAMEKLAL 956
Query: 1351 AF----DELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSR 1406
A +L++YL + P+++ + +P++ + +T T S LA+ + +E I Y +R
Sbjct: 957 AVVMSARKLRQYLQSHPIVV--MTSQPIRTILHST--TQSSRLAKWAIELSEYDIEYRTR 1012
Score = 140 bits (352), Expect = 1e-32
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 3/245 (1%)
Query: 1390 AQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDI 1449
A D +G ++ I+Y+S+ L AET Y +EKL L + S KL+ Y++ ++V + I
Sbjct: 924 APPDHEG-QKPIYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPIVVMTSQPI 982
Query: 1450 IKHMLSKPILHSRIGKWALALTEYSLTYAPLKAIKGQAVADFLADHTVPKEIVTYVGIQP 1509
+ +L SR+ KWA+ L+EY + Y + K Q +ADF+ + + T +
Sbjct: 983 -RTILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADLDGTNSN-KK 1040
Query: 1510 WKLYFDGSSHKNGTGIGMFIMSPQGAPTKFKFRIEGNCSNNEVEYEALISGLEILLALGA 1569
W L+ DGSS++ G+G G+ + SP G + FR+ N SNNE EYEALI G+++ +
Sbjct: 1041 WLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNNESEYEALIDGIKLAQGMRI 1100
Query: 1570 KNVVIKGDSELVVKQLTKEYKCVSEHLAKYYVKANNLLAKFNEIGIGHVPRIENQEANEL 1629
+++ DS+LV Q EY+ E + Y L +F + +PR EN + L
Sbjct: 1101 RDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSTDAL 1160
Query: 1630 AQIAS 1634
A +AS
Sbjct: 1161 AALAS 1165
Score = 135 bits (339), Expect = 3e-31
Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 1669 NDWRKPIVEYLQNPVGSTD----RKVKYRALSYTILGNELFKKNINGTLLKCLSENDAFM 1724
NDWR PI++Y++ + D RK+K ++ Y I+ L K+++ G + C
Sbjct: 1246 NDWRIPIIDYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKD 1305
Query: 1725 AVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQHVPASE 1784
+ + H+G CG+H +G ++ I+ + DCI ++ C CQ+H+ H P E
Sbjct: 1306 LMKSMHEGQCGSHYSGRTLRCIM----------LADCIAHSLRCDKCQRHAPTLHQPPEE 1355
Query: 1785 LHSIIKPWPFRGWAIDLIGEIHPASSKQH-KYIIVAVDYFTKWVEAIPLQNVTQETVIEF 1843
+ SI P+PF W++D++ + + K+ K ++V DY TKW+E Q VT++ V F
Sbjct: 1356 MSSISSPYPFMKWSMDVVRPMEASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVF 1415
Query: 1844 IQNHIVYRFGLPESITTDQGTVFVGRKVAAFAES 1877
+ +IVYR G+P I TD G K FA S
Sbjct: 1416 LLENIVYRHGIPYEIVTDNGLTSPREKSKHFATS 1449
Score = 37.7 bits (86), Expect = 0.071
Identities = 23/97 (23%), Positives = 45/97 (45%), Gaps = 2/97 (2%)
Query: 1985 LDEERLLALDVLTRQKDRIAKAYNKKVRDRSFITGDYVWKVILPMDKKDRVYGKWTPNWE 2044
+DE R A+ + + + YN ++ R F G+ V + + + ++ GK NWE
Sbjct: 1467 IDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFS-NTRELNAGKLGTNWE 1525
Query: 2045 GPFTVEKTLPNNAY-VIKELGNQRQCVTINGKYLKAY 2080
GP+ + + + + Y ++K + N +LK Y
Sbjct: 1526 GPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 237 bits (604), Expect = 6e-62
Identities = 128/289 (44%), Positives = 181/289 (62%), Gaps = 7/289 (2%)
Query: 1047 EMPGLNRELVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWL 1106
+M G++ E+ +L + K VKQ R+ P+ + +E+++LL I +Y +WL
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535
Query: 1107 ANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQ 1166
AN V V KKN K RVCIDF DLN A PKD + +P + MV++ G+E LS +D +SGYNQ
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595
Query: 1167 IFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQ 1226
I + +D KT+F GTY + VMPFGLKN G A YQR++N +F + M+
Sbjct: 596 IPMHKDDQEKTSFIIDR--GTYCYKVMPFGLKNVG-----ARYQRLVNQMFAPQLGKTME 648
Query: 1227 VYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEI 1286
VYIDD++VKS H+ HL+ FE + KY +K+NP KC FGV +G+FLG++V K+GIE
Sbjct: 649 VYIDDMLVKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEA 708
Query: 1287 NKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLR 1335
N + +AILD P +KK++Q L G+I L RFI ++K+ F LLR
Sbjct: 709 NPKQIRAILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
>At2g10780 pseudogene
Length = 1611
Score = 231 bits (588), Expect = 4e-60
Identities = 152/471 (32%), Positives = 249/471 (52%), Gaps = 25/471 (5%)
Query: 1025 ELKDRMVKLLKEFKDCFAWDYDEMPGLNRELVELKLPIKEDKKPVKQLPRRFHPDVLVKI 1084
ELKD + ++ EF D FA P + + ++ P+ + P R P + K+
Sbjct: 621 ELKD--IPIVNEFSDVFAAVSGVPPDRSDPFT---IELEPGTTPISKAPYRMAPAEMAKL 675
Query: 1085 KEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEM 1144
K+++E LL FIR + W A V+ V KK+G R+CID+R LN T K++Y +P +
Sbjct: 676 KKQLEELLDKGFIRPSSS-PWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDE 734
Query: 1145 MVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKN 1204
++D G ++ S +D SGY+QI I DV KTAFR +E+VVMPFGL NA
Sbjct: 735 LMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRT--RYDHFEFVVMPFGLTNAP--- 789
Query: 1205 AGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLK 1264
A + ++MN +F DF++ F+ ++I+DI+V S S + H HLR ER+R++ L K
Sbjct: 790 --AAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKLSK 847
Query: 1265 CAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLS 1324
C+F + FLG V+ +G+ ++ K ++I + P + +++S LG + RRF+ + +
Sbjct: 848 CSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFA 907
Query: 1325 EKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDET 1384
+ + L K+ F W E +K+F ELK L+N PV++ P +G P +Y A+
Sbjct: 908 SMAQPLTRL--TGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVG 965
Query: 1385 IGSMLAQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVF 1444
+G +L Q+ I Y SR L E Y + + F + Y+ V ++
Sbjct: 966 LGCVLMQKGS-----VIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIY 1020
Query: 1445 SHYDIIKHMLSKPILHSRIGKWALALTEYSL--TYAPLKAIKGQAVADFLA 1493
+ + +K++ ++P L+ R +W + +Y+L Y P KA VAD L+
Sbjct: 1021 TDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKA---NQVADALS 1068
Score = 84.7 bits (208), Expect = 5e-16
Identities = 82/335 (24%), Positives = 138/335 (40%), Gaps = 19/335 (5%)
Query: 1729 AHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQHVPASELHSI 1788
AH H KM L R +W + KD + C CQ VP+ L ++
Sbjct: 1167 AHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNL 1225
Query: 1789 -IKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVT-QETVIEFIQN 1846
I W + +D + + +H + V VD TK + + + E + E +
Sbjct: 1226 PIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYID 1285
Query: 1847 HIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQVEAANKILISL 1906
IV G+P SI +D+ T F + AF ++ G ++ ST Y+ Q + Q E + L +
Sbjct: 1286 EIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDM 1345
Query: 1907 IKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEAVLPAEVYLQSCRIQRQ 1966
++ V W + L V +AY NS + G +P+ YG+ P C
Sbjct: 1346 LRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPL------CWTPVG 1399
Query: 1967 EEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRIAKAY-NKKVRDRSFITGDYVWKV 2025
E ++ ++DE ER+ L + ++ K+Y NK+ ++ F GD V+
Sbjct: 1400 ER---RLFGPTIVDETT----ERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLK 1452
Query: 2026 ILPMDKKDRVYG--KWTPNWEGPFTVEKTLPNNAY 2058
+ R K +P + GP+ V + + AY
Sbjct: 1453 AMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAY 1487
>At4g03800
Length = 637
Score = 222 bits (566), Expect = 2e-57
Identities = 124/346 (35%), Positives = 198/346 (56%), Gaps = 30/346 (8%)
Query: 1048 MPGLNRELVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLA 1107
MP ++ ++ +L + KP+KQ R+ + + +I++LLK IR +Y DW+A
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 1108 NVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQI 1167
V V KKNGK RVCIDF DLN A PKD + +P + +V+S AG+E L+ +D + GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 1168 FIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQV 1227
+ ED KT+F + + GATYQ ++N +F++ + M+V
Sbjct: 441 MMNPEDQEKTSF----------------------ITDRGATYQWLVNKMFNEHLRKTMEV 478
Query: 1228 YIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEIN 1287
IDD +VKS ++ H+ HL + FE + +Y +K+N KC FGV +G+FLG++V K+GIE N
Sbjct: 479 SIDDTLVKSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEAN 538
Query: 1288 KNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAE 1347
N+ A L T + K++Q L G+I + ++K+ F + LK + F W+ +
Sbjct: 539 PNQINAFLKTPSLRNFKEVQRLTGRI------ASRSTDKSLPFYQI--LKGNNGFLWDEK 590
Query: 1348 HQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQED 1393
++AF +LK YL+ PPV+ P + LY+ ++ + +L +ED
Sbjct: 591 CEEAFRQLKAYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 220 bits (560), Expect = 8e-57
Identities = 145/455 (31%), Positives = 243/455 (52%), Gaps = 22/455 (4%)
Query: 1031 VKLLKEFKDCFAWDYDEMPGLNRELVE-LKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIE 1089
+++++EF+D F + GL + + ++ P+ + P R P + ++K++++
Sbjct: 457 IRVVQEFQDVF----QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLK 512
Query: 1090 RLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSA 1149
LL FIR + W A V+ V KK+G R+CID+R+LN T K+ Y +P + ++D
Sbjct: 513 DLLGKGFIRPSTS-PWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQL 571
Query: 1150 AGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATY 1209
G S +D SGY+QI IA DV KTAFR G +E+VVMPFGL NA A +
Sbjct: 572 RGATCFSKIDLTSGYHQIPIAEADVRKTAFRT--RYGHFEFVVMPFGLTNAP-----AVF 624
Query: 1210 QRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGV 1269
R+MN++F +F++ F+ ++IDDI+V S S + +HLR+ E++R+ L KC+F
Sbjct: 625 MRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQ 684
Query: 1270 IAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKS 1329
FLG +V +G+ ++ K +AI D PT+ +++S LG + RRF+ + +
Sbjct: 685 REMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQP 744
Query: 1330 FSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSML 1389
+ L K+ F W E ++ F LK+ L++ PV+ P G+P +Y A+ +G +L
Sbjct: 745 MTKL--TGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVL 802
Query: 1390 AQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDI 1449
Q + + I Y SR L E Y + + F+ + Y+ V VF+ +
Sbjct: 803 MQ-----HGKVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKS 857
Query: 1450 IKHMLSKPILHSRIGKWALALTEYSL--TYAPLKA 1482
+K++ ++P L+ R +W + +Y L Y P KA
Sbjct: 858 LKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKA 892
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 219 bits (558), Expect = 1e-56
Identities = 149/466 (31%), Positives = 246/466 (51%), Gaps = 25/466 (5%)
Query: 1031 VKLLKEFKDCFAWDYDEMPGLNRELVE-LKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIE 1089
+++++EF+D F + GL + + ++ P+ + P R P + ++K+++E
Sbjct: 483 IRVIQEFEDVF----QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLE 538
Query: 1090 RLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSA 1149
LL FIR + W A V+ V KK+G R+CID+R LN T K++Y +P + ++D
Sbjct: 539 DLLGKGFIRPSTS-PWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQL 597
Query: 1150 AGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATY 1209
G S +D SGY+QI IA DV KTAFR G +E+VVMPF L NA A +
Sbjct: 598 RGATCFSKIDLTSGYHQIPIAEADVRKTAFRT--RYGHFEFVVMPFALTNAP-----AAF 650
Query: 1210 QRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGV 1269
R+MN++F +F++ F+ ++IDDI+V S S + H +HLR+ E++R+ L KC+F
Sbjct: 651 MRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQ 710
Query: 1270 IAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKS 1329
FLG +V +G+ ++ K +AI D PT+ +++S L + RRF+ + +
Sbjct: 711 REIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQP 770
Query: 1330 FSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSML 1389
+ L K+ F W E ++ F LK+ L++ PV+ P G+P +Y A+ +G +L
Sbjct: 771 MTKL--TGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVL 828
Query: 1390 AQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDI 1449
Q + I Y SR L E Y + + F+ + Y+ V VF+ +
Sbjct: 829 MQRG-----KVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKS 883
Query: 1450 IKHMLSKPILHSRIGKWALALTEYSL--TYAPLKAIKGQAVADFLA 1493
+K++ ++P L+ R +W + +Y L Y P KA VAD L+
Sbjct: 884 LKYIFNQPELNLRQMRWMELVADYDLEIAYHPGKA---NVVADALS 926
Score = 66.2 bits (160), Expect = 2e-10
Identities = 79/337 (23%), Positives = 128/337 (37%), Gaps = 50/337 (14%)
Query: 1726 VSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQHVPASEL 1785
+S AH + H KM L R W + +D + C CQ VP +
Sbjct: 1020 LSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQLVKAEHQVPDA-- 1076
Query: 1786 HSIIKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVTQETVI-EFI 1844
I V +D TK + ++ V+ +
Sbjct: 1077 ------------------------------IWVIMDRLTKSAHFLAIRKTDGAAVLAKKY 1106
Query: 1845 QNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQVEAANKILI 1904
+ IV G+P SI +D+ + F AF G K+ ST Y+ Q +GQ E + L
Sbjct: 1107 VSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLE 1166
Query: 1905 SLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEAVLPAEVYLQSCRIQ 1964
+++ V W + LS V +AY NS + G PF YG+ P R
Sbjct: 1167 DMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTP-------LRWT 1219
Query: 1965 RQEEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRIAKAY-NKKVRDRSFITGD--Y 2021
+ EE +Y + E ER+ L + ++ ++Y +K+ R+ F GD Y
Sbjct: 1220 QVEE--RSIYGADYVQETT----ERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVY 1273
Query: 2022 VWKVILPMDKKDRVYGKWTPNWEGPFTVEKTLPNNAY 2058
+ +L + + K +P + GPF + + + AY
Sbjct: 1274 LKMAMLRGPNRSILETKLSPRYMGPFRIVERVGPVAY 1310
>At3g11970 hypothetical protein
Length = 1499
Score = 211 bits (538), Expect = 3e-54
Identities = 150/464 (32%), Positives = 239/464 (51%), Gaps = 23/464 (4%)
Query: 1032 KLLKEFKDCFAWDYDEMPGLNRELVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERL 1091
++L E+ D F + +P RE K+ + E PV Q P R+ +I + +E L
Sbjct: 567 EVLNEYPDIFI-EPTALPPF-REKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDL 624
Query: 1092 LKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAG 1151
L ++ A + + VV V KK+G R+C+D+R+LN T KD + +P+ E ++D G
Sbjct: 625 LTNGTVQ-ASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGG 683
Query: 1152 HEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQR 1211
S +D +GY+Q+ + +D+ KTAF+ G +E++VMPFGL NA AT+Q
Sbjct: 684 AVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHS--GHFEYLVMPFGLTNAP-----ATFQG 736
Query: 1212 VMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIA 1271
+MN IF F+ F+ V+ DDI+V S S + H HL++ FE MR L KCAF V
Sbjct: 737 LMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPK 796
Query: 1272 GDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFS 1331
++LG + +GIE + K KA+ + PT+ KQL+ LG + RRF+ +
Sbjct: 797 VEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIA---G 853
Query: 1332 SLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQ 1391
L L K D F W A Q+AF++LK L PV+ P+ + + A + IG++L Q
Sbjct: 854 PLHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ 913
Query: 1392 EDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIK 1451
E + Y+SR L G + ++ EK L + F+ K ++Y+ ++ + +K
Sbjct: 914 EG-----HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLK 968
Query: 1452 HMLSKPILHSRIGKWALALTE--YSLTYAPLKAIKGQAVADFLA 1493
++L + + +W L E Y + Y + K VAD L+
Sbjct: 969 YLLEQRLNTPIQQQWLPKLLEFDYEIQY---RQGKENVVADALS 1009
Score = 79.0 bits (193), Expect = 3e-14
Identities = 72/304 (23%), Positives = 129/304 (41%), Gaps = 23/304 (7%)
Query: 1753 YWPTIMKDCIEYARGCQDCQKHSGIQHVPASELHSIIKPWPFRGWA---IDLIGEIHPAS 1809
YW ++KD Y R C CQ+ L + P P W+ +D I + +
Sbjct: 1111 YWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL--PIPDTIWSEVSMDFIEGLPVSG 1168
Query: 1810 SKQHKYIIVAVDYFTKWVEAIPLQN-VTQETVIEFIQNHIVYRFGLPESITTDQGTVFVG 1868
K I+V VD +K I L + + TV +++ G P SI +D+ VF
Sbjct: 1169 GKT--VIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTS 1226
Query: 1869 RKVAAFAESWGIKLLTSTPYYAQANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWA 1928
F G+ L ++ Y+ Q++GQ E N+ L + ++ +P+ W + L+ +
Sbjct: 1227 EFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYW 1286
Query: 1929 YRNSPTEATGTTPFRLAYGQEAVLPAEVYLQSCRIQRQEEIPSEVYWNMMLDEMVNLDEE 1988
Y + ++ TPF + YGQ V P + +P E ++ + ++
Sbjct: 1287 YNTNYHSSSRMTPFEIVYGQ--VPPVHL----------PYLPGESKVAVVARSLQEREDM 1334
Query: 1989 RLLALDVLTRQKDRIAKAYNKKVRDRSFITGDYVWKVILPMDKKD---RVYGKWTPNWEG 2045
L L R + R+ + ++ +R F GDYV+ + P ++ R K +P + G
Sbjct: 1335 LLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFG 1394
Query: 2046 PFTV 2049
P+ +
Sbjct: 1395 PYKI 1398
>At1g36590 hypothetical protein
Length = 1499
Score = 211 bits (538), Expect = 3e-54
Identities = 150/464 (32%), Positives = 239/464 (51%), Gaps = 23/464 (4%)
Query: 1032 KLLKEFKDCFAWDYDEMPGLNRELVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERL 1091
++L E+ D F + +P RE K+ + E PV Q P R+ +I + +E L
Sbjct: 567 EVLNEYPDIFI-EPTALPPF-REKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDL 624
Query: 1092 LKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAG 1151
L ++ A + + VV V KK+G R+C+D+R+LN T KD + +P+ E ++D G
Sbjct: 625 LTNGTVQ-ASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGG 683
Query: 1152 HEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQR 1211
S +D +GY+Q+ + +D+ KTAF+ G +E++VMPFGL NA AT+Q
Sbjct: 684 AVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHS--GHFEYLVMPFGLTNAP-----ATFQG 736
Query: 1212 VMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIA 1271
+MN IF F+ F+ V+ DDI+V S S + H HL++ FE MR L KCAF V
Sbjct: 737 LMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPK 796
Query: 1272 GDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFS 1331
++LG + +GIE + K KA+ + PT+ KQL+ LG + RRF+ +
Sbjct: 797 VEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIA---G 853
Query: 1332 SLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQ 1391
L L K D F W A Q+AF++LK L PV+ P+ + + A + IG++L Q
Sbjct: 854 PLHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ 913
Query: 1392 EDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIK 1451
E + Y+SR L G + ++ EK L + F+ K ++Y+ ++ + +K
Sbjct: 914 EG-----HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLK 968
Query: 1452 HMLSKPILHSRIGKWALALTE--YSLTYAPLKAIKGQAVADFLA 1493
++L + + +W L E Y + Y + K VAD L+
Sbjct: 969 YLLEQRLNTPIQQQWLPKLLEFDYEIQY---RQGKENVVADALS 1009
Score = 77.4 bits (189), Expect = 8e-14
Identities = 81/349 (23%), Positives = 146/349 (41%), Gaps = 36/349 (10%)
Query: 1708 NINGTLLKCLSENDAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARG 1767
NI T+L L + H G HQ ++K + + +G+ +KD Y R
Sbjct: 1079 NIKNTILLWLHGSGV-----GGHSGRDVTHQ---RVKGLFYSKGM-----IKDIQAYIRS 1125
Query: 1768 CQDCQKHSGIQHVPASELHSIIKPWPFRGWA---IDLIGEIHPASSKQHKYIIVAVDYFT 1824
C CQ+ L + P P W+ +D I + + K I+V VD +
Sbjct: 1126 CGTCQQCKSDPAASPGLLQPL--PIPDTIWSEVSMDFIEGLPVSGGKT--VIMVVVDRLS 1181
Query: 1825 KWVEAIPLQN-VTQETVIEFIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLL 1883
K I L + + TV + +++ G P SI +D+ VF F G+ L
Sbjct: 1182 KAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALK 1241
Query: 1884 TSTPYYAQANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFR 1943
++ Y+ Q++GQ E N+ L + ++ +P+ W + L+ + Y + ++ TPF
Sbjct: 1242 LTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFE 1301
Query: 1944 LAYGQEAVLPAEVYLQSCRIQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRI 2003
+ YGQ V P + +P E ++ + ++ L L R + R+
Sbjct: 1302 IVYGQ--VPPVHL----------PYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRM 1349
Query: 2004 AKAYNKKVRDRSFITGDYVWKVILPMDKKD---RVYGKWTPNWEGPFTV 2049
+ ++ +R F GDYV+ + P ++ R K +P + GP+ +
Sbjct: 1350 KQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 211 bits (537), Expect = 4e-54
Identities = 152/491 (30%), Positives = 248/491 (49%), Gaps = 41/491 (8%)
Query: 1014 RPTYISALIDPELKDRMVK----LLKEFKDCFAWDYDEMPGLNRELVE-LKLPIKEDKKP 1068
RPT S +I ++M++ EF+D F + GL + + ++ P
Sbjct: 423 RPTSGSLVISAVQAEKMIEKGCEAYLEFEDVF----QSLQGLPPSRSDPFTIELEPGTAP 478
Query: 1069 VKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDL 1128
+ + P R P + ++K+++E LL A V+ V KK+G R+CID+R L
Sbjct: 479 LSKAPYRMAPAEMAELKKQLEDLLG-------------APVLFVKKKDGSFRLCIDYRGL 525
Query: 1129 NAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTY 1188
N T K++Y +P + ++D G S +D SGY+ I IA DV KTAFR G +
Sbjct: 526 NWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFRT--RYGHF 583
Query: 1189 EWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRK 1248
E+VVMPFGL NA A + R+MN++F + ++ F+ ++IDDI+V S S + H +HLR+
Sbjct: 584 EFVVMPFGLTNAP-----AAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRR 638
Query: 1249 SFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQS 1308
E++R+ L KC+F FLG +V +G+ ++ K +AI D PT+ +++S
Sbjct: 639 VMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRS 698
Query: 1309 LLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPP 1368
LG + RRF+ + + + L K+ F W E ++ F LK+ L++ PV+ P
Sbjct: 699 FLGLAGYYRRFVKGFASMAQPMTKL--TGKDVPFVWSPECEEGFVSLKEMLTSTPVLALP 756
Query: 1369 IKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFS 1428
G P +Y A+ +G +L Q + I Y SR L E Y + + F+
Sbjct: 757 EHGEPYMVYTDASGVGLGCVLMQRG-----KVIAYASRQLRKHEGNYPTHDLEMAAVIFA 811
Query: 1429 CVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSL--TYAPLKAIKGQ 1486
+ Y+ +V VF+ + +K++ ++P L+ R +W + +Y L Y P KA
Sbjct: 812 LKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKA---N 868
Query: 1487 AVADFLADHTV 1497
VAD L+ V
Sbjct: 869 VVADALSHKRV 879
Score = 74.3 bits (181), Expect = 7e-13
Identities = 78/304 (25%), Positives = 126/304 (40%), Gaps = 18/304 (5%)
Query: 1759 KDCIEYARGCQDCQKHSGIQHVPASELHSI-IKPWPFRGWAIDLIGEIHPASSKQHKYII 1817
+D + C CQ VP L S+ I W + ID + + + +K ++I
Sbjct: 941 EDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTKDAIWVI 1000
Query: 1818 VAVDYFTKWVEAIPLQNVTQETVI-EFIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAE 1876
V D TK + ++ V+ + + IV G+P SI +D+ + F AF
Sbjct: 1001 V--DRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQA 1058
Query: 1877 SWGIKLLTSTPYYAQANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEA 1936
G K+ ST Y+ Q GQ E + L +++ V W + LS V +AY NS +
Sbjct: 1059 EMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPAS 1118
Query: 1937 TGTTPFRLAYGQEAVLPAEVYLQSCRIQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVL 1996
G PF Y + P C Q E +Y + E + R+L L++
Sbjct: 1119 IGMAPFEALYERPCRTPL------CLTQVGER---SIYGADYVQE--TTERIRVLKLNMK 1167
Query: 1997 TRQKDRIAKAYNKKVRDRSFITGDYVWKVILPMDKKDRVYG--KWTPNWEGPFTVEKTLP 2054
Q DR +K+ R+ F GD V+ + + +R K +P + GPF + + +
Sbjct: 1168 EAQ-DRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVG 1226
Query: 2055 NNAY 2058
AY
Sbjct: 1227 PVAY 1230
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 211 bits (536), Expect = 5e-54
Identities = 134/391 (34%), Positives = 211/391 (53%), Gaps = 20/391 (5%)
Query: 1025 ELKDRMVKLLKEFKDCFAWDYDEMPGLNRELVELKLPIKEDKKPVKQLPRRFHPDVLVKI 1084
ELKD + ++ EF D FA P + + ++ P+ + P R P + ++
Sbjct: 116 ELKD--ILIVNEFSDVFAAVSGVPPDRSDPFT---IELEPGTTPISKAPYRMAPAEMAEL 170
Query: 1085 KEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEM 1144
K+++E LL FIR + W A V+ V KK+G R+CID+R LN T K++Y +P +
Sbjct: 171 KKQLEELLAKGFIRPSSS-PWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDE 229
Query: 1145 MVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFGLKNAGLKN 1204
++D G ++ S +D SGY+QI I DV KTAFR G +E+VVMPFGL NA
Sbjct: 230 LMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRT--RYGHFEFVVMPFGLTNAP--- 284
Query: 1205 AGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKYGLKMNPLK 1264
A + ++MN +F DF++ F+ ++IDDI+V S S + H HLR ER+R++ L K
Sbjct: 285 --AAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSK 342
Query: 1265 CAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLS 1324
+F + FLG V+ +G+ ++ K ++I + P + +++S LG + RRF+ + +
Sbjct: 343 FSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFA 402
Query: 1325 EKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKLYISATDET 1384
+ + L K+ F W E +K+F ELK L N PV++ P +G P +Y A+
Sbjct: 403 SMAQPLTRL--TGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVG 460
Query: 1385 IGSMLAQEDEDGNERAIFYLSRVLNGAETRY 1415
+G +L Q+ I Y SR L E Y
Sbjct: 461 LGCVLMQKGS-----VIAYASRQLRKHEKNY 486
Score = 89.7 bits (221), Expect = 2e-17
Identities = 92/399 (23%), Positives = 164/399 (41%), Gaps = 33/399 (8%)
Query: 1671 WRKPIVEYLQNPVGSTDRKVKYRALSYTILGNELFKKNINGTLLK----CLSENDAFMA- 1725
WR ++ Q D ++K +T+ ++ + NGT++ C+ + A
Sbjct: 503 WRSYLIRLAQE----RDEEIK----GWTLNNKTEYQTSNNGTIVVNGRVCVPNDRALKEE 554
Query: 1726 -VSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHSGIQHVPASE 1784
+ AH H KM L R +W + KD + C CQ VP+
Sbjct: 555 ILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQLVKAEHQVPSGL 613
Query: 1785 LHSI-IKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVT-QETVIE 1842
L ++ I W + +D + + +H + V VD TK + + + E + E
Sbjct: 614 LQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAE 673
Query: 1843 FIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQVEAANKI 1902
+ I+ G+P SI +D+ T F + AF ++ G ++ ST Y+ Q +GQ E +
Sbjct: 674 KYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQT 733
Query: 1903 LISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEAVLPAEVYLQSCR 1962
L +++ V W + L + +AY NS + G +P+ YG+ P C
Sbjct: 734 LEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPL------CW 787
Query: 1963 IQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRIAKAY-NKKVRDRSFITGDY 2021
E ++ ++DE ER+ L + ++ K+Y NK+ ++ F GD
Sbjct: 788 TPVGER---RLFGPTIVDETT----ERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDL 840
Query: 2022 VWKVILPMDKKDRVYG--KWTPNWEGPFTVEKTLPNNAY 2058
V+ + R K +P + GP+ V + + AY
Sbjct: 841 VYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAY 879
>At1g35370 hypothetical protein
Length = 1447
Score = 200 bits (509), Expect = 6e-51
Identities = 148/479 (30%), Positives = 244/479 (50%), Gaps = 32/479 (6%)
Query: 1018 ISALIDPELKDRMVK-LLKEFKDCFAWDYDEMPGLNRELVELKLPIKEDKKPVKQLPRRF 1076
ISAL +++ +V+ +++EF D FA D P RE + K+ + E PV Q P R+
Sbjct: 531 ISALTSDVVEESVVQNIVEEFPDVFAEPTDLPPF--REKHDHKIKLLEGANPVNQRPYRY 588
Query: 1077 HPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDE 1136
+I + ++ ++K I+ + + + VV V KK+G R+C+D+ +LN T KD
Sbjct: 589 VVHQKDEIDKIVQDMIKSGTIQVSSS-PFASPVVLVKKKDGTWRLCVDYTELNGMTVKDR 647
Query: 1137 YHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSKTAFRCPGALGTYEWVVMPFG 1196
+ +P+ E ++D G S +D +GY+Q+ + +D+ KTAF+ G +E++VM F
Sbjct: 648 FLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHN--GHFEYLVMLF- 704
Query: 1197 LKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDGHLLHLRKSFERMRKY 1256
GL NA AT+Q +MN++F DF+ F+ V+ DDI++ S S + H HLR FE MR +
Sbjct: 705 ----GLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLH 760
Query: 1257 GLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFL 1316
L F + + LG + + IE + K +A+ + PT+ KQ++ LG +
Sbjct: 761 KL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYY 812
Query: 1317 RRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPVMIPPIKGRPMKL 1376
RRF+ N L L K D F W E Q AFD LK L N PV+ P+ + +
Sbjct: 813 RRFVRNFGVIA---GPLHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMV 869
Query: 1377 YISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAETRYTMIEKLCLCLYFSCVKLKYYI 1436
A + I ++L Q+ + Y+SR L G + ++ EK L F+ K ++Y+
Sbjct: 870 ETDACGQGIRAVLMQKG-----HPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYL 924
Query: 1437 KPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTE--YSLTYAPLKAIKGQAVADFLA 1493
P ++ + +K++L + + +W L E Y + Y + K VAD L+
Sbjct: 925 LPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQY---RQGKENLVADALS 980
Score = 78.2 bits (191), Expect = 5e-14
Identities = 68/304 (22%), Positives = 131/304 (42%), Gaps = 23/304 (7%)
Query: 1753 YWPTIMKDCIEYARGCQDCQKHSGIQHVPASELHSIIKPWPFRGW---AIDLIGEIHPAS 1809
YW ++KD + R C CQ+ L + P P + W ++D I + +
Sbjct: 1082 YWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPDKIWCDVSMDFIEGLPNSG 1139
Query: 1810 SKQHKYIIVAVDYFTKWVEAIPLQN-VTQETVIEFIQNHIVYRFGLPESITTDQGTVFVG 1868
K I+V VD +K + L + + TV + +++ G P SI +D+ +F
Sbjct: 1140 GKS--VIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTS 1197
Query: 1869 RKVAAFAESWGIKLLTSTPYYAQANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWA 1928
F + G++L S+ Y+ Q++GQ E N+ L + ++ +P W++ L +
Sbjct: 1198 DFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYW 1257
Query: 1929 YRNSPTEATGTTPFRLAYGQEAVLPAEVYLQSCRIQRQEEIPSEVYWNMMLDEMVNLDEE 1988
Y + ++ TPF L YGQ + +P + ++ + +
Sbjct: 1258 YNTNYHSSSQMTPFELVYGQAPPI------------HLPYLPGKSKVAVVARSLQERENM 1305
Query: 1989 RLLALDVLTRQKDRIAKAYNKKVRDRSFITGDYVWKVILPMDKKD---RVYGKWTPNWEG 2045
L L R + R+ + ++ +R+F GD+V+ + P ++ RV K +P + G
Sbjct: 1306 LLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFG 1365
Query: 2046 PFTV 2049
P+ +
Sbjct: 1366 PYKI 1369
>At2g13230 pseudogene
Length = 353
Score = 196 bits (497), Expect = 2e-49
Identities = 115/352 (32%), Positives = 183/352 (51%), Gaps = 35/352 (9%)
Query: 1609 KFNEIGIGHVPRIENQEANELAQIASGYMVDKLKLTELIKIKEKLSPS-DLDIM------ 1661
+F+E + +PR EN A+ LA +AS L + +I ++ PS +LD +
Sbjct: 14 QFHEFKLTRIPRGENTSADALAALAS---TSDLNMRRVIPVEFIEKPSIELDKVEHAFPI 70
Query: 1662 --------CIDNLTS----NDWRKPIVEYLQNPVGSTD----RKVKYRALSYTILGNELF 1705
DN S ++W +PI ++ D RK+K A + ++ +LF
Sbjct: 71 QVVAGYEDASDNSPSLGCDSEWIEPIRNFISKRKVRLDKWEARKLKAEAARFVLVEEKLF 130
Query: 1706 KKNINGTLLKCLSENDAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYA 1765
K ++G L+ C+ + A + H G CG + G + + R G +WPT++KDC
Sbjct: 131 KWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKRLGYFWPTMIKDC---- 186
Query: 1766 RGCQDCQKHSGIQHVPASELHSIIKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTK 1825
+ CQ+++ H+PA L SI P+P W++D+IG +H +SKQ K ++V DYF+K
Sbjct: 187 ---EKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMH--ASKQKKLVLVLTDYFSK 241
Query: 1826 WVEAIPLQNVTQETVIEFIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTS 1885
EA ++ + V F+ HI+ R G+P I TD G+ F+ + F + WGI+L S
Sbjct: 242 LREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFISTRFQGFCDKWGIRLSKS 301
Query: 1886 TPYYAQANGQVEAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEAT 1937
TP Y Q NGQ +AANK ++ +KK + K W + L VLW++R +P AT
Sbjct: 302 TPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSHRTTPRRAT 353
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 192 bits (489), Expect = 1e-48
Identities = 137/506 (27%), Positives = 236/506 (46%), Gaps = 57/506 (11%)
Query: 1015 PTYISALIDPELKDRMVKLLKEFKDCFAWDYDEMPGLNRELVELKLPIKEDKKPVKQLPR 1074
P ++ + + + ++ L +++ + D++ G++ L ++ ++ + + R
Sbjct: 846 PVIVNDELTADQVNLLITELMKYRKAIGYSLDDIKGISPTLCTHRIHLENESYSSIEPQR 905
Query: 1075 RFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKM--------------- 1119
R +P++ +K+EI +LL I W++ V V KK G
Sbjct: 906 RLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTI 965
Query: 1120 ---RVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*EDVSK 1176
R+CI++R LN A+ K+ + +P + M++ A H Y LD YSG+ QI I D K
Sbjct: 966 TGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGK 1025
Query: 1177 TAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKS 1236
T F CP GT+ + MPFGL NA AT+QR M +IF D IE ++V++DD V
Sbjct: 1026 TTFTCP--YGTFAYKRMPFGLCNAP-----ATFQRCMTSIFSDLIEEMVEVFMDDFSVYG 1078
Query: 1237 PSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILD 1296
S LL+L + +R + L +N KC F V G LG + ++GIE++K K ++
Sbjct: 1079 SSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQ 1138
Query: 1297 TSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFDELK 1356
PP + K ++S LG F R FI + S+ + + L L KE F ++ E AF +K
Sbjct: 1139 LQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRL--LCKETEFAFDDECLTAFKLIK 1196
Query: 1357 KYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAETRYT 1416
+ L P++ P P ++ ++ A+ RY
Sbjct: 1197 EALITAPIVQAPNWDFPFEII-----------------------------TMDDAQVRYA 1227
Query: 1417 MIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLT 1476
EK L + F+ K + Y+ V +++ + ++H+ +K R+ +W L L E+ +
Sbjct: 1228 TTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDME 1287
Query: 1477 YAPLKAIKGQAVADFLADHTVPKEIV 1502
K I+ VAD L+ + E++
Sbjct: 1288 IVDKKGIE-NGVADHLSRMRIEDEVL 1312
Score = 152 bits (384), Expect = 2e-36
Identities = 107/366 (29%), Positives = 166/366 (45%), Gaps = 38/366 (10%)
Query: 1716 CLSENDAFMAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKDCIEYARGCQDCQKHS 1775
C+SE++ + H G H A K + + G +WP++ KD E+ C +
Sbjct: 1386 CVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDSFEN-- 1443
Query: 1776 GIQHVPASELHSIIKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNV 1835
F W ID +G SS +KYI+VA+DY +KWVEAI
Sbjct: 1444 ------------------FDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTN 1483
Query: 1836 TQETVIEFIQNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQ 1895
V++ + I RFG+P + +D G F+ + + G+K TS GQ
Sbjct: 1484 DARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQ 1535
Query: 1896 VEAANKILISLIKKHVGRKPKRWHESLSQVLWAYRNSPTEATGTTPFRLAYGQEAVLPAE 1955
VE +N+ + ++++K VG K W L+ LWAYR + GTTPF L YG+ LP E
Sbjct: 1536 VEISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVE 1595
Query: 1956 VYLQSCRIQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVLTRQKDRIAKAYNKKVRDRS 2015
+ ++ + + L ++ +L++ RL A + K+R ++KK+ R
Sbjct: 1596 LEYKAMWAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRD 1655
Query: 2016 FITGDYVWKVILPMDKKDRVY-GKWTPNWEGPFTVEKTLPNNAYVIKELGNQRQCVTING 2074
F GD V L + + R++ GK W GPF+V P A L + T+NG
Sbjct: 1656 FKVGDQV----LLFNSRLRLFPGKLKSRWSGPFSVTAVRPYGAIT---LAGKNGDFTVNG 1708
Query: 2075 KYLKAY 2080
+ LK Y
Sbjct: 1709 QRLKKY 1714
>At2g06890 putative retroelement integrase
Length = 1215
Score = 177 bits (449), Expect = 6e-44
Identities = 124/383 (32%), Positives = 194/383 (50%), Gaps = 21/383 (5%)
Query: 1114 KKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA*ED 1173
+K+G R+C D R +N T K + +P + M+D G S +D SGY+QI + D
Sbjct: 464 QKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGD 523
Query: 1174 VSKTAFRCPGALGTYEWVVMPFGLKNAGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIV 1233
KTAF+ G YEW+VMPFGL +A +T+ R+MN + FI F+ VY DDI+
Sbjct: 524 EWKTAFKTKH--GLYEWLVMPFGLTHAP-----STFMRLMNHVLRAFIGIFVIVYFDDIL 576
Query: 1234 VKSPSRDGHLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKA 1293
V S S H+ HL +RK L N KC F FLGFVV G+++++ K KA
Sbjct: 577 VYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKA 636
Query: 1294 ILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSSLLRLKKEDVFRWEAEHQKAFD 1353
I D P + +++S G F RRF + S + + +KK+ F+WE ++AF
Sbjct: 637 IRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEV--MKKDVGFKWEKAQEEAFQ 694
Query: 1354 ELKKYLSNPPVMIPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNGAET 1413
LK L+N PV+I + ++ A+ IG++L Q+ ++ I + S L GA
Sbjct: 695 SLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQD-----QKLIAFFSEKLGGATL 749
Query: 1414 RYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEY 1473
Y +K L + + ++Y+ P ++ + ++ +KH+ + L+ R +W E+
Sbjct: 750 NYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARW----VEF 805
Query: 1474 SLTYA---PLKAIKGQAVADFLA 1493
T+A K K VAD L+
Sbjct: 806 IETFAYVIKYKKGKDNVVADALS 828
Score = 37.0 bits (84), Expect = 0.12
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 1940 TPFRLAYGQEAVLPAEVYLQ--SCRIQRQEEIPSEVYWNMMLDEMVNLDEERLLALDVLT 1997
+PF++ YG + P ++ S R+ + +E+ + + N++E+ L
Sbjct: 988 SPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIHENARRNIEEKTKL------ 1041
Query: 1998 RQKDRIAKAYNKKVRDRSFITGDYVW----KVILPMDKKDRVYGKWTPNWEGPFTVEKTL 2053
AK NK R++ F GD VW K P +K ++ P +GPF + K +
Sbjct: 1042 -----YAKQANKGRREQIFEVGDMVWIHLRKERFPAQRKSKLM----PRIDGPFKIIKRI 1092
Query: 2054 PNNAY 2058
+NAY
Sbjct: 1093 NDNAY 1097
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.333 0.143 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,664,633
Number of Sequences: 26719
Number of extensions: 1810395
Number of successful extensions: 7319
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 6901
Number of HSP's gapped (non-prelim): 266
length of query: 2087
length of database: 11,318,596
effective HSP length: 115
effective length of query: 1972
effective length of database: 8,245,911
effective search space: 16260936492
effective search space used: 16260936492
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0545.3