BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0520.5
(262 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 239 8e-64
At2g31080 putative non-LTR retroelement reverse transcriptase 239 1e-63
At4g15590 reverse transcriptase like protein 213 6e-56
At2g07730 putative non-LTR retroelement reverse transcriptase 199 2e-51
At2g17610 putative non-LTR retroelement reverse transcriptase 186 1e-47
At4g10830 putative protein 182 1e-46
At2g01840 putative non-LTR retroelement reverse transcriptase 181 3e-46
At2g31520 putative non-LTR retroelement reverse transcriptase 175 2e-44
At2g25550 putative non-LTR retroelement reverse transcriptase 175 2e-44
At3g45550 putative protein 175 3e-44
At1g47910 reverse transcriptase, putative 174 6e-44
At2g07650 putative non-LTR retrolelement reverse transcriptase 171 5e-43
At2g11240 pseudogene 165 2e-41
At2g45230 putative non-LTR retroelement reverse transcriptase 162 2e-40
At4g09710 RNA-directed DNA polymerase -like protein 161 3e-40
At2g41580 putative non-LTR retroelement reverse transcriptase 158 2e-39
At2g17910 putative non-LTR retroelement reverse transcriptase 158 2e-39
At2g05200 putative non-LTR retroelement reverse transcriptase 155 2e-38
At1g24640 hypothetical protein 155 2e-38
At2g16680 putative non-LTR retroelement reverse transcriptase 152 2e-37
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 239 bits (611), Expect = 8e-64
Identities = 117/249 (46%), Positives = 169/249 (66%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI++ QEV+H++ +K +G + +K+DLEKAYDR+ WD L TL G P V IM
Sbjct: 1088 DNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMK 1147
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
V+ P + +LWN K +F P RGLRQGDPLSPYLFVLC+ERL I++ + WKP++
Sbjct: 1148 CVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIK 1207
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
I++ G +SH+ FADD++LF +AS +Q++++ L++FC ASG KV+L+KS++ FSK V
Sbjct: 1208 ISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVL 1267
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+S +G+ DLGKYLG+P+L+ R+ K F +I + SSRL WK +L+ AG
Sbjct: 1268 RDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAG 1327
Query: 243 RVCLAKSVL 251
R+ L K+VL
Sbjct: 1328 RLTLTKAVL 1336
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 239 bits (610), Expect = 1e-63
Identities = 117/249 (46%), Positives = 166/249 (65%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI+L QE +H++ +K +G + +K+DLEKAYDRV WDFL+ TL G IM
Sbjct: 412 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMA 471
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
GV P +S+LWN + SF P RGLRQGDPLSPYLFVLC+ERL I+ V + WKP+
Sbjct: 472 GVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIA 531
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
++ G +SH+ FADD++LF +AS Q++++ L+ FCEASG KV+L+KS++ FS V
Sbjct: 532 VSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVS 591
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+ +S +GI +LGKYLG+P+L+ R+ K F ++ ++S+RL WK L+ AG
Sbjct: 592 REMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAG 651
Query: 243 RVCLAKSVL 251
R+ L K+VL
Sbjct: 652 RITLTKAVL 660
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 213 bits (543), Expect = 6e-56
Identities = 110/250 (44%), Positives = 159/250 (63%), Gaps = 17/250 (6%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI++ QE +H++ +K +G + +K+DLEKAYDR+ WDFL TL G + IM
Sbjct: 364 DNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIME 423
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
V P++S+LWN K SF P+RGLRQGDP+SPYLFVLC+ERL QI+ V +G WK +
Sbjct: 424 CVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSIS 483
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
I++ G +SH+ FADD++LF +AS Q KV+L+KS++ FS V
Sbjct: 484 ISQGGPKVSHVCFADDLILFAEASVAQ-----------------KVSLEKSKIFFSNNVS 526
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+ ++ GI +LGKYLG+P+L+ R+ K F ++ ++SSRL+ WK+ L+ AG
Sbjct: 527 RDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAG 586
Query: 243 RVCLAKSVLM 252
R+ L K+VLM
Sbjct: 587 RITLTKAVLM 596
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 199 bits (505), Expect = 2e-51
Identities = 105/249 (42%), Positives = 150/249 (60%), Gaps = 18/249 (7%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI+L QE +H++ +K +G + +K+DLEKAYDR+ W+FL+ TL G IM
Sbjct: 262 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHRIMA 321
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
GV P +S+LWN K SF P RGLRQGDPLSPYLFVLC+ERL I+ V WKP+
Sbjct: 322 GVTDPSMSVLWNGGKTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGTWDWKPMA 381
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
++ C+AS Q+ ++ L++FCEASG V+L+KS+++FS V
Sbjct: 382 LS------------------CEASVAQILIIRRVLEQFCEASGQNVSLEKSKIVFSNNVS 423
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+ +S +GI +LGKYLG+P+L+ R+ K ++ +SS L WK+ L+ A
Sbjct: 424 RDMERLISGESGIGCTRELGKYLGMPILQKRMNKETSGEVLEHVSSSLAGWKSRSLSLAW 483
Query: 243 RVCLAKSVL 251
R+ L K+VL
Sbjct: 484 RITLTKAVL 492
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 186 bits (472), Expect = 1e-47
Identities = 95/249 (38%), Positives = 147/249 (58%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI++A E++H++HT+K + VA K+D+ KA+D++ W F+ A + GF + + IM
Sbjct: 4 DNILIAHELIHSLHTKKLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMT 63
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
+ SIL N + P+RG+RQGDP+SPYL++LC E L+ IQ + +
Sbjct: 64 CITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFK 123
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
+++G ISHL FA D L+FC+A+ E+ + N LK + +ASG VN KS +LF K +D
Sbjct: 124 ASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLD 183
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
R LS + GI + G+YLG+P GR F+ + M ++ +W N LL+ AG
Sbjct: 184 FRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAG 243
Query: 243 RVCLAKSVL 251
+ L KS++
Sbjct: 244 KEVLIKSIV 252
>At4g10830 putative protein
Length = 1294
Score = 182 bits (463), Expect = 1e-46
Identities = 100/251 (39%), Positives = 144/251 (56%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A E+MH++ T+K+ + +A+K D+ KAYDRV W+FL T+ FGF + IM
Sbjct: 910 DNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIM 969
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N + PQRG+RQGDPLSPYLF+LC + L I+N V +G + +
Sbjct: 970 GAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGI 1029
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI G++HL FADD L FCQ++ Q + + + SG K+N+ KS + F V
Sbjct: 1030 RIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRV 1089
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L +I GI GKYLG+P GR + F +I ++ R +SW L+ A
Sbjct: 1090 HGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPA 1149
Query: 242 GRVCLAKSVLM 252
G+ + KSV M
Sbjct: 1150 GKEIMLKSVAM 1160
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 181 bits (460), Expect = 3e-46
Identities = 96/251 (38%), Positives = 144/251 (57%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A E++H++ ++++ + G VA+K D+ KAYDRV W+FL + GF PR V IM
Sbjct: 910 DNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIM 969
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V +L N S P RG+RQGDPLSPYLF+ C E L+ ++ +
Sbjct: 970 TCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGM 1029
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
+ITKD + ISHL FADD L FC+AS + ++ + K++ EASG K+N KS ++F + +
Sbjct: 1030 KITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKI 1089
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
R+ L + GI GKYLG+P GR F ++ K+ R W N L+ A
Sbjct: 1090 PTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPA 1149
Query: 242 GRVCLAKSVLM 252
G+ + K++ M
Sbjct: 1150 GKEIVIKAIAM 1160
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 175 bits (444), Expect = 2e-44
Identities = 99/251 (39%), Positives = 138/251 (54%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A EVMH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 704 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 763
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N S P RG+RQGDPLSPYLF+LC + L+ I + G + V
Sbjct: 764 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 823
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 824 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 883
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L I I GKYLG+P GR K F +I ++ R ++W L+ A
Sbjct: 884 YGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 943
Query: 242 GRVCLAKSVLM 252
G+ + KSV +
Sbjct: 944 GKEIMLKSVAL 954
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 175 bits (444), Expect = 2e-44
Identities = 99/251 (39%), Positives = 138/251 (54%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A EVMH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 930 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 989
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N S P RG+RQGDPLSPYLF+LC + L+ I + G + V
Sbjct: 990 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 1049
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 1050 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 1109
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L I I GKYLG+P GR K F +I ++ R ++W L+ A
Sbjct: 1110 YGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 1169
Query: 242 GRVCLAKSVLM 252
G+ + KSV +
Sbjct: 1170 GKEIMLKSVAL 1180
>At3g45550 putative protein
Length = 851
Score = 175 bits (443), Expect = 3e-44
Identities = 99/251 (39%), Positives = 139/251 (54%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A E+MH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 169 DNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIM 228
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N S +P RG+RQGDPLSPYLF+LC + L+ I+ + G + V
Sbjct: 229 AAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGV 288
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 289 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRV 348
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L + I GKYLG+P GR K F +I ++ R SW L+ A
Sbjct: 349 YGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPA 408
Query: 242 GRVCLAKSVLM 252
G+ L KSV +
Sbjct: 409 GKEILLKSVAL 419
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 174 bits (440), Expect = 6e-44
Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 1/249 (0%)
Query: 3 DNIILAQEVMHTIHTQKKGRG-LVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNI++AQE+ H + T + +AIK D+ KAYD+V W+F+ A L GF + + IM
Sbjct: 332 DNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIM 391
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
W + + +L N P+RGLRQGDPLSPYLF+LC E L I+ Q +
Sbjct: 392 WCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGI 451
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
++ +SHL FADD L FC+A+KEQ ++ LK++ SG ++N KS + F V
Sbjct: 452 KVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKV 511
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
+ + ++ I GI +G YLG+P G F+ + ++ SR+ W L++
Sbjct: 512 EDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKG 571
Query: 242 GRVCLAKSV 250
G+ + KSV
Sbjct: 572 GKEVMIKSV 580
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 171 bits (432), Expect = 5e-43
Identities = 89/249 (35%), Positives = 142/249 (56%), Gaps = 35/249 (14%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI++ QE +H++ +K +G + +K+DLEKAYDR+ W+FL TL P + + IM
Sbjct: 109 DNIVIMQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWEFLEDTLRAVRLPEKWIVWIMQ 168
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
V P +S+LWN ++ + + WKP+
Sbjct: 169 CVTEPSMSLLWN-----------------------------------EHSIARKDWKPIS 193
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
+++ G +SH+ FADD++LF +AS Q++++ L+ FC ASG KV+L+KS++ FS+ V
Sbjct: 194 LSQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVS 253
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+S +GIS +LGKYLG+P+L+ R+ K F ++ K+++RL WK L+ AG
Sbjct: 254 RDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAG 313
Query: 243 RVCLAKSVL 251
RV L K+VL
Sbjct: 314 RVTLTKAVL 322
>At2g11240 pseudogene
Length = 1044
Score = 165 bits (418), Expect = 2e-41
Identities = 84/252 (33%), Positives = 139/252 (54%), Gaps = 1/252 (0%)
Query: 1 TRDNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDL 59
+ DN+++ E +H + + + R +A+K ++ KAYDR+ WDF++ + + GF +
Sbjct: 372 SNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISW 431
Query: 60 IMWGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWK 119
I+ + S L N S + P+RGLRQGDPLSP+LF++C E L+ + G+
Sbjct: 432 ILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLL 491
Query: 120 PVRITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSK 179
+R++K ++HL FADD + FC++ + + LK++ EASG +N KS + FS+
Sbjct: 492 GLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSR 551
Query: 180 AVDHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLN 239
+ I GI LGKYLG+P + GR + F ++ ++ R SW + L+
Sbjct: 552 KTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLS 611
Query: 240 RAGRVCLAKSVL 251
AG+ + KSVL
Sbjct: 612 TAGKTTMLKSVL 623
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 162 bits (410), Expect = 2e-40
Identities = 89/251 (35%), Positives = 134/251 (52%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNI++A E++H + + K +AIK D+ KAYDRV W FL + GF + LIM
Sbjct: 548 DNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIM 607
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK + +L N + P RGLRQGDPLSPYLFV+C E L +Q+ + +
Sbjct: 608 ECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGL 667
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
++ + ISHL FADD + +C+ + E L + ++E+ ASG +VN KS + F K +
Sbjct: 668 KVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHI 727
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
R+ + GI R G YLG+P A + L ++ ++ W++N L+
Sbjct: 728 SEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPG 787
Query: 242 GRVCLAKSVLM 252
G+ L K+V M
Sbjct: 788 GKEILLKAVAM 798
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 161 bits (408), Expect = 3e-40
Identities = 93/252 (36%), Positives = 139/252 (54%), Gaps = 5/252 (1%)
Query: 3 DNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++ E++H + K +AIK D+ KAYDR+ W+FL+ L GF + + +M
Sbjct: 489 DNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVM 548
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V S L N S S P RGLRQGDPLSPYLF+LC E L+ + +G +
Sbjct: 549 QCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGI 608
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
R+ + ++HL FADD + FC+ + ++N LK++ ASG +NL KS + FS
Sbjct: 609 RVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKT 668
Query: 182 --DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLN 239
D +R++ LS I +GKYLG+P GR + F+S++ ++ R SW L+
Sbjct: 669 PQDIKRRVKLS--LRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLS 726
Query: 240 RAGRVCLAKSVL 251
AG+ L K+VL
Sbjct: 727 SAGKQILLKAVL 738
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 158 bits (400), Expect = 2e-39
Identities = 89/251 (35%), Positives = 131/251 (51%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNIILA E++H + T +K + + K D+ KAYDRV W FL+ L GF ++ +M
Sbjct: 277 DNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMM 336
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V S+L N P RGLRQGDPLSP+LFVLC E L + G +
Sbjct: 337 ACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGI 396
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
+ G ++HL FADD LL C+AS+ + + + L ++ SG +N +KS + F V
Sbjct: 397 QFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKV 456
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
+ + + + +GI GKYLG+P + F + K+ SRL+ W L++
Sbjct: 457 NEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQG 516
Query: 242 GRVCLAKSVLM 252
G+ L KS+ M
Sbjct: 517 GKDILLKSIAM 527
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 158 bits (400), Expect = 2e-39
Identities = 90/251 (35%), Positives = 135/251 (52%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNI++A E++H++ T + + +A K D+ KAYDRV W FL + GF + + IM
Sbjct: 526 DNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIM 585
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V S+L N P RG+RQGDPLSP LFVLC E L + G +
Sbjct: 586 NCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGI 645
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
+ V ++HL FADD LL C+A+K++ + + L ++ + SG +NL+KS + F K V
Sbjct: 646 QFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNV 705
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
D + + + +GIS GKYLG+P + F + K+ SRLT W L++
Sbjct: 706 DIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQG 765
Query: 242 GRVCLAKSVLM 252
G+ L KS+ +
Sbjct: 766 GKEVLLKSIAL 776
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 155 bits (393), Expect = 2e-38
Identities = 88/250 (35%), Positives = 132/250 (52%), Gaps = 1/250 (0%)
Query: 3 DNIILAQEVMHTIHTQK-KGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++ EV+H + T K +A+K D+ KAYDRV WDFL+ L FGF +D ++
Sbjct: 443 DNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVL 502
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V S L N + P RGLRQGDPLSP LF+LC E L+ V
Sbjct: 503 ECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGV 562
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
R++ +G ++HL FADD + F ++ E ++ L + +ASG +N KS + FS
Sbjct: 563 RVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKT 622
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
+ + I I + GKYLG+P GR + F ++I K+ + SW + L++A
Sbjct: 623 PRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQA 682
Query: 242 GRVCLAKSVL 251
G+ + K+VL
Sbjct: 683 GKQVMLKAVL 692
>At1g24640 hypothetical protein
Length = 1270
Score = 155 bits (393), Expect = 2e-38
Identities = 90/253 (35%), Positives = 138/253 (53%), Gaps = 5/253 (1%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNI++A E++H++ + +A+K D+ KAYDRV W +LR+ L GF + V+ IM
Sbjct: 511 DNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIM 570
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V S+L N QRGLRQGDPLSP+LFVLC E L + +G + +
Sbjct: 571 VCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGI 630
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
+ +++G + HL FADD L C+AS+EQ ++ LK + A+G +NL+KS + F + V
Sbjct: 631 QFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKV 690
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIP--LLKGRVTKAHFASLIGKMSSRLTSWKNNLLN 239
D + + + GI G YLG+P +V H+ L ++ +L W L+
Sbjct: 691 DEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHY--LKDRLKEKLDVWFTRCLS 748
Query: 240 RAGRVCLAKSVLM 252
+ G+ L KSV +
Sbjct: 749 QGGKEVLLKSVAL 761
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 152 bits (384), Expect = 2e-37
Identities = 83/251 (33%), Positives = 130/251 (51%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNI++A E++H++ T K + + K D+ KAYDRV W FL+ L GF + + IM
Sbjct: 500 DNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWIM 559
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V S+L N P+RG+RQGDP+SP+LFVLC E L +Q +
Sbjct: 560 GCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSGI 619
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
+ G ++HL F DD L C+A+K + + L ++ SG +N++KS + F V
Sbjct: 620 QFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVKV 679
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
D + + + +GI GKYLG+P + F + K+ S L+ W + L++
Sbjct: 680 DEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLSQG 739
Query: 242 GRVCLAKSVLM 252
G+ L KS+ +
Sbjct: 740 GKEILLKSIAL 750
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.327 0.141 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,592,270
Number of Sequences: 26719
Number of extensions: 225653
Number of successful extensions: 705
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 72
length of query: 262
length of database: 11,318,596
effective HSP length: 97
effective length of query: 165
effective length of database: 8,726,853
effective search space: 1439930745
effective search space used: 1439930745
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0520.5