BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0490.11
         (418 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g11970 hypothetical protein                                        195  4e-50
At1g36590 hypothetical protein                                        195  4e-50
At1g35370 hypothetical protein                                        176  2e-44
At2g10780 pseudogene                                                  171  5e-43
At4g10580 putative reverse-transcriptase -like protein                167  1e-41
At2g04670 putative retroelement pol polyprotein                       166  2e-41
At2g05610 putative retroelement pol polyprotein                       166  2e-41
At2g07660 putative retroelement pol polyprotein                       157  1e-38
At2g14650 putative retroelement pol polyprotein                       145  3e-35
At1g20390 hypothetical protein                                        137  1e-32
At2g06890 putative retroelement integrase                             135  4e-32
At1g37060 Athila retroelment ORF 1, putative                          123  2e-28
At2g14400 putative retroelement pol polyprotein                       119  4e-27
At2g15410 putative retroelement pol polyprotein                       103  2e-22
At4g07600                                                             102  5e-22
At4g03650 putative reverse transcriptase                              100  1e-21
At2g14040 putative retroelement pol polyprotein                        98  1e-20
At2g13330 F14O4.9                                                      96  4e-20
At2g14380 putative retroelement pol polyprotein                        95  6e-20
At2g10690 putative retroelement pol polyprotein                        94  1e-19

>At3g11970 hypothetical protein
          Length = 1499

 Score =  195 bits (495), Expect = 4e-50
 Identities = 127/402 (31%), Positives = 209/402 (51%), Gaps = 16/402 (3%)

Query: 14   QQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIKDDKFPLPKIYSL 73
            + L+  G ++ + S +A     V K+    R    L VDYR LN     D FP+P I  L
Sbjct: 622  EDLLTNGTVQASSSPYASPVVLVKKKDGTWR----LCVDYRELNGMTVKDSFPIPLIEDL 677

Query: 74   YSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKA 133
               +  A IFSK D+++G+ Q+ +DP D  KTAF   + H+++ V+PFGL  AP+ FQ  
Sbjct: 678  MDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGL 737

Query: 134  MTKIFEPILHT-SLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQIATKEV 192
            M  IF+P L    LV+ DD+L++S   E H++ L+Q +++   + +     K   A  +V
Sbjct: 738  MNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKV 797

Query: 193  DFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKYTSKLS 252
            ++LG   +       P  ++ + ++P +  T+KQ++ FLG+  Y R F+         L 
Sbjct: 798  EYLGHFISAQGIETDPAKIKAVKEWP-QPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLH 856

Query: 253  KMLRKNAPPWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASDHYWAAVLIEEID 311
             + + +A  W     +A + LK A    P L +P  D + +++TDA      AVL++E  
Sbjct: 857  ALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQE-- 914

Query: 312  GQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDNSSFPKMLE 371
            G  L   + S Q K  +LH     KE LAV + ++++  +L   HF ++ D  S   +LE
Sbjct: 915  GHPL--AYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLE 972

Query: 372  FKNKTPPNPQIL-RLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
             +  TP   Q L +L E    +D+ +++ QG +N++ D LSR
Sbjct: 973  QRLNTPIQQQWLPKLLE----FDYEIQYRQGKENVVADALSR 1010


>At1g36590 hypothetical protein
          Length = 1499

 Score =  195 bits (495), Expect = 4e-50
 Identities = 127/402 (31%), Positives = 209/402 (51%), Gaps = 16/402 (3%)

Query: 14   QQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIKDDKFPLPKIYSL 73
            + L+  G ++ + S +A     V K+    R    L VDYR LN     D FP+P I  L
Sbjct: 622  EDLLTNGTVQASSSPYASPVVLVKKKDGTWR----LCVDYRELNGMTVKDSFPIPLIEDL 677

Query: 74   YSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKA 133
               +  A IFSK D+++G+ Q+ +DP D  KTAF   + H+++ V+PFGL  AP+ FQ  
Sbjct: 678  MDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGL 737

Query: 134  MTKIFEPILHT-SLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQIATKEV 192
            M  IF+P L    LV+ DD+L++S   E H++ L+Q +++   + +     K   A  +V
Sbjct: 738  MNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKV 797

Query: 193  DFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKYTSKLS 252
            ++LG   +       P  ++ + ++P +  T+KQ++ FLG+  Y R F+         L 
Sbjct: 798  EYLGHFISAQGIETDPAKIKAVKEWP-QPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLH 856

Query: 253  KMLRKNAPPWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASDHYWAAVLIEEID 311
             + + +A  W     +A + LK A    P L +P  D + +++TDA      AVL++E  
Sbjct: 857  ALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQE-- 914

Query: 312  GQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDNSSFPKMLE 371
            G  L   + S Q K  +LH     KE LAV + ++++  +L   HF ++ D  S   +LE
Sbjct: 915  GHPL--AYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLE 972

Query: 372  FKNKTPPNPQIL-RLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
             +  TP   Q L +L E    +D+ +++ QG +N++ D LSR
Sbjct: 973  QRLNTPIQQQWLPKLLE----FDYEIQYRQGKENVVADALSR 1010


>At1g35370 hypothetical protein
          Length = 1447

 Score =  176 bits (447), Expect = 2e-44
 Identities = 122/402 (30%), Positives = 198/402 (48%), Gaps = 24/402 (5%)

Query: 14  QQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIKDDKFPLPKIYSL 73
           Q +IK G I+ + S +A     V K+    R    L VDY  LN     D+F +P I  L
Sbjct: 601 QDMIKSGTIQVSSSPFASPVVLVKKKDGTWR----LCVDYTELNGMTVKDRFLIPLIEDL 656

Query: 74  YSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKA 133
              +  + +FSK D+++G+ Q+ +DP D  KTAF   N H+++ V+ FGL  AP+ FQ  
Sbjct: 657 MDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSL 716

Query: 134 MTKIFEPILHT-SLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQIATKEV 192
           M  +F   L    LV+ DD+L++S   E HK+ L+  +++   H +     K        
Sbjct: 717 MNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKLFAKGSK-------- 768

Query: 193 DFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKYTSKLS 252
           + LG   +  +    P  ++ + ++P    T+KQ++ FLG   Y R F+ +       L 
Sbjct: 769 EHLGHFISAREIETDPAKIQAVKEWPTP-TTVKQVRGFLGFAGYYRRFVRNFGVIAGPLH 827

Query: 253 KMLRKNAPPWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASDHYWAAVLIEEID 311
            + + +   W  E   A   LK    N P L +P  D + +++TDA      AVL+++  
Sbjct: 828 ALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRAVLMQK-- 885

Query: 312 GQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDNSSFPKMLE 371
           G  L   + S Q K  +LH     KE LA  + ++++  +L   HF ++ D  S   +LE
Sbjct: 886 GHPL--AYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLE 943

Query: 372 FKNKTPPNPQIL-RLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
            +  TP   Q L +L E    +D+ +++ QG +NL+ D LSR
Sbjct: 944 QRLNTPVQQQWLPKLLE----FDYEIQYRQGKENLVADALSR 981


>At2g10780 pseudogene
          Length = 1611

 Score =  171 bits (434), Expect = 5e-43
 Identities = 119/422 (28%), Positives = 206/422 (48%), Gaps = 21/422 (4%)

Query: 1    MTPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFI 60
            M P+E+   +++ ++L+ +G I P+ S W     +V K+    R    L +DYR LN+  
Sbjct: 667  MAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGSFR----LCIDYRGLNKVT 722

Query: 61   KDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLP 120
              +K+PLP+I  L   +  A  FSK D+ SG+ Q+ ++P D  KTAF     H+++ V+P
Sbjct: 723  VKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMP 782

Query: 121  FGLKVAPSLFQKAMTKIFEPIL-HTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVM 179
            FGL  AP+ F K M  +F   L    +++I+D+L++S   E+H++ L+   +   +H + 
Sbjct: 783  FGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELF 842

Query: 180  LSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRD 239
                K     + V FLG   ++      P  +  + ++P       +I+ FLG+  Y R 
Sbjct: 843  AKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWP-RPRNATEIRSFLGLAGYYRR 901

Query: 240  FIPHVSKYTSKLSKMLRKN-APPWGKEQTEAIKFLKKAAQNPPPLKIPGDGK-RILQTDA 297
            F+   +     L+++  K+ A  W  E  ++   LK    N P L +P +G+   + TDA
Sbjct: 902  FVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDA 961

Query: 298  SDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHF 357
            S      VL+++  G  +   +AS Q +  E +Y T   E  AV + +K +  +L G   
Sbjct: 962  SIVGLGCVLMQK--GSVI--AYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKV 1017

Query: 358  EVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSL---YDFSVKHVQGSKNLIPDYLSRPK 414
            ++  D+ S   +      T P    LR + W  L   Y+  + +  G  N + D LSR +
Sbjct: 1018 QIYTDHKSLKYIF-----TQPELN-LRQRRWMELVADYNLDIAYHPGKANQVADALSRRR 1071

Query: 415  QQ 416
             +
Sbjct: 1072 SE 1073


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  167 bits (422), Expect = 1e-41
 Identities = 118/420 (28%), Positives = 202/420 (48%), Gaps = 21/420 (5%)

Query: 1   MTPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFI 60
           M P+E+   +++ + L+ +G I P+ S W     +V K+    R    L +DYR LN+  
Sbjct: 499 MAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVKKKDGSFR----LCIDYRELNRVT 554

Query: 61  KDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLP 120
             +++PLP+I  L   ++ A  FSK D+ SG+ Q+ +   D  KTAF     H+++ V+P
Sbjct: 555 VKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMP 614

Query: 121 FGLKVAPSLFQKAMTKIFEPIL-HTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVM 179
           FGL  AP++F + M  +F+  L    +++IDD+L++S   E  +  L++  +   +  + 
Sbjct: 615 FGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLF 674

Query: 180 LSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRD 239
               K     +E+ FLG   +       P  +E +  +P       +I+ FLG   Y R 
Sbjct: 675 AKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWP-RPTNATEIRSFLGWAGYYRR 733

Query: 240 FIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIPGDGK-RILQTDA 297
           F+   +     ++K+  K+ P  W +E  E    LK+   + P L +P  G+  ++ TDA
Sbjct: 734 FVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDA 793

Query: 298 SDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHF 357
           S      VL++   G+ +   +AS Q    E +Y T   E  AV + +K +  +L G   
Sbjct: 794 SRVGLGCVLMQH--GKVI--AYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKV 849

Query: 358 EVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSL---YDFSVKHVQGSKNLIPDYLSRPK 414
           +V  D+ S   +      T P    LR + W  L   YD  + +  G  N++ D LSR +
Sbjct: 850 QVFTDHKSLKYIF-----TQPELN-LRQRRWMELVADYDLEIAYHPGKANVVVDALSRKR 903


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  166 bits (421), Expect = 2e-41
 Identities = 115/417 (27%), Positives = 200/417 (47%), Gaps = 15/417 (3%)

Query: 1   MTPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFI 60
           M P+E+   +++ + L+ +G I P+ S W     +V K+    R    L +DYR LN   
Sbjct: 525 MAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVKKKDGSFR----LCIDYRGLNWVT 580

Query: 61  KDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLP 120
             +K+PLP+I  L   ++ A  FSK D+ SG+ Q+ +   D  KTAF     H+++ V+P
Sbjct: 581 VKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMP 640

Query: 121 FGLKVAPSLFQKAMTKIFEPIL-HTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVM 179
           F L  AP+ F + M  +F+  L    +++IDD+L++S   E H+  L++  +   +  + 
Sbjct: 641 FALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLF 700

Query: 180 LSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRD 239
               K     +E+ FLG   +       P  +E +  +P       +I+ FL +  Y R 
Sbjct: 701 AKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWP-RPTNATEIRSFLRLTGYYRR 759

Query: 240 FIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIPGDGK-RILQTDA 297
           F+   +     ++K+  K+ P  W  E  E    LK+   + P L +P  G+  ++ TDA
Sbjct: 760 FVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDA 819

Query: 298 SDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHF 357
           S      VL++   G+ +   +AS Q +  E +Y T   E   V + +K +  +L G   
Sbjct: 820 SRVGLGCVLMQR--GKVI--AYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKV 875

Query: 358 EVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSRPK 414
           +V  D+ S   +    N+   N + +R  E  + YD  + +  G  N++ D LSR +
Sbjct: 876 QVFTDHKSLKYIF---NQPELNLRQMRWMELVADYDLEIAYHPGKANVVADALSRKR 929


>At2g05610 putative retroelement pol polyprotein
          Length = 780

 Score =  166 bits (420), Expect = 2e-41
 Identities = 119/400 (29%), Positives = 187/400 (46%), Gaps = 67/400 (16%)

Query: 16  LIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIKDDKFPLPKIYSLYS 75
           ++  G I+ + S +A     V K+    R    L VDYR LN     D+FP+P I  L  
Sbjct: 66  MLASGTIQASSSPYASPVVLVKKKDGTWR----LCVDYRELNGMTVKDRFPIPLIEDLMD 121

Query: 76  YIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKAMT 135
            +  ++++SK D+++G+ Q+ +DP D  KTAF   N HY++ V+PFGL  AP+ FQ  M 
Sbjct: 122 ELGGSNVYSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMN 181

Query: 136 KIFEPILHT-SLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQIATKEVDF 194
             F+P L    LV+ DD+L++S   E HKK L+  +++   H +     K   A   V++
Sbjct: 182 SFFKPFLRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEY 241

Query: 195 LGMHFTEGK-FVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKYTSKLSK 253
           LG HF  G+     P  ++ +  +P   + +KQ+  FLG+  Y R F             
Sbjct: 242 LG-HFISGEGIATDPAKIKAVQDWP-VPVNLKQLCGFLGLTGYYRRFF------------ 287

Query: 254 MLRKNAPPWGKEQTEAIKFLKKAAQNPPPLKIPGDGKRILQTDASDHYWAAVLIEEIDGQ 313
                                                 +++ DA  H   AVL++E  G 
Sbjct: 288 --------------------------------------VVEMDACGHGIGAVLMQE--GH 307

Query: 314 KLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDNSSFPKMLEFK 373
            L     S Q K  +LH     KE LAV + ++++  +L   HF ++ D  S   +LE +
Sbjct: 308 PL--AFISRQLKGKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQR 365

Query: 374 NKTPPNPQIL-RLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
             TP   Q L +L E    +D+ +++ QG +NL+ D LSR
Sbjct: 366 LNTPIQQQWLPKLLE----FDYEIQYKQGKENLVADALSR 401


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  157 bits (397), Expect = 1e-38
 Identities = 103/349 (29%), Positives = 175/349 (49%), Gaps = 12/349 (3%)

Query: 1   MTPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFI 60
           M P+E+   +++ ++L+ +G I P+ S W     +V K+    R    L +DYR LN+  
Sbjct: 162 MAPAEMAELKKQLEELLAKGFIRPSSSPWGAPVLFVKKKDGSFR----LCIDYRGLNKVT 217

Query: 61  KDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLP 120
             +K+PLP+I  L   +  A  FSK D+ SG+ Q+ ++P D  KTAF     H+++ V+P
Sbjct: 218 VKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMP 277

Query: 121 FGLKVAPSLFQKAMTKIFEPIL-HTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVM 179
           FGL  AP+ F K M  +F   L    +++IDD+L+ S   E+H++ L+   +   +H + 
Sbjct: 278 FGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELF 337

Query: 180 LSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRD 239
               K     + V FLG   ++      P  +  + ++P       +I+ FLG+  Y R 
Sbjct: 338 AKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWP-RPRNATEIRSFLGLAGYYRR 396

Query: 240 FIPHVSKYTSKLSKMLRKN-APPWGKEQTEAIKFLKKAAQNPPPLKIPGDGK-RILQTDA 297
           F+   +     L+++  K+ A  W  E  ++   LK    N P L +P +G+   + TDA
Sbjct: 397 FVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDA 456

Query: 298 SDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIK 346
           S      VL+++  G  +   +AS Q +  E +Y T   E  AV + +K
Sbjct: 457 SIVGLGCVLMQK--GSVI--AYASRQLRKHEKNYPTHDLEMAAVVFALK 501


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  145 bits (367), Expect = 3e-35
 Identities = 106/373 (28%), Positives = 180/373 (47%), Gaps = 17/373 (4%)

Query: 48  RLVVDYRPLNQFIKDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAF 107
           RL +DYR LN     +K+PLP+I  L   ++ A  FSK D+ SG+  + +   D  KTAF
Sbjct: 517 RLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAF 576

Query: 108 CIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPIL-HTSLVYIDDVLLFSHDEESHKKFL 166
                H+++ V+PFGL  AP+ F + M  +F+ +L    +++IDD+L++S   E H+  L
Sbjct: 577 RTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHL 636

Query: 167 QQFYDICSKHGVMLSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQ 226
           ++  +   +  +     K     +E+ FLG   +       P  +E +  +        +
Sbjct: 637 RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW-HTPTNATE 695

Query: 227 IQQFLGILNYIRDFIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKI 285
           I+ FLG+  Y R F+   +     ++K+  K+ P  W  E  E    LK+   + P L +
Sbjct: 696 IRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLAL 755

Query: 286 PGDGK-RILQTDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYG 344
           P  G+  ++ TDAS      VL++   G+ +   +AS Q +  E +Y T   E  AV + 
Sbjct: 756 PEHGEPYMVYTDASGVGLGCVLMQR--GKVI--AYASRQLRKHEGNYPTHDLEMAAVIFA 811

Query: 345 IKRFDFHLRGHHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSL---YDFSVKHVQG 401
           +K +  +L G + +V  D+ S   +      T P    LR ++W  L   YD  + +  G
Sbjct: 812 LKIWRSYLYGGNVQVFTDHKSLKYIF-----TQPELN-LRQRQWMELVADYDLEIAYHPG 865

Query: 402 SKNLIPDYLSRPK 414
             N++ D LS  +
Sbjct: 866 KANVVADALSHKR 878


>At1g20390 hypothetical protein
          Length = 1791

 Score =  137 bits (344), Expect = 1e-32
 Identities = 103/364 (28%), Positives = 166/364 (45%), Gaps = 9/364 (2%)

Query: 3    PSELRAAQEECQQLIKQG-LIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
            P   RA  EE ++L+K G +IE    EW      V K++     K R+ VDY  LN+   
Sbjct: 787  PERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNG----KWRVCVDYTDLNKACP 842

Query: 62   DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
             D +PLP I  L        + S  D  SG+ Q+ +   D+ KT+F      Y + V+ F
Sbjct: 843  KDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSF 902

Query: 122  GLKVAPSLFQKAMTKIF-EPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVML 180
            GLK A + +Q+ + K+  + I  T  VYIDD+L+ S   E H + L + +D+ + +G+ L
Sbjct: 903  GLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKL 962

Query: 181  SSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDF 240
            +  K        +FLG   T+      P  +  + + P      +++Q+  G +  +  F
Sbjct: 963  NPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSP-RNAREVQRLTGRIAALNRF 1021

Query: 241  IPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIPGDGKRI-LQTDAS 298
            I   +        +L++ A   W K+  EA + LK     PP L  P  G+ + L    S
Sbjct: 1022 ISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVS 1081

Query: 299  DHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFE 358
            DH  ++VL+ E  G++    + S    +AE  Y    K  LAV    ++   + + H   
Sbjct: 1082 DHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIA 1141

Query: 359  VQID 362
            V  D
Sbjct: 1142 VLTD 1145


>At2g06890 putative retroelement integrase
          Length = 1215

 Score =  135 bits (340), Expect = 4e-32
 Identities = 103/378 (27%), Positives = 178/378 (46%), Gaps = 14/378 (3%)

Query: 41  EQVRQKK---RLVVDYRPLNQFIKDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGL 97
           E  RQK    R+  D R +N        P+P++  +   +  + IFSK D+KSG+ Q+ +
Sbjct: 460 ELQRQKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRM 519

Query: 98  DPKDRPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPILHT-SLVYIDDVLLFS 156
           +  D  KTAF   +  Y+W V+PFGL  APS F + M  +    +    +VY DD+L++S
Sbjct: 520 NEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYS 579

Query: 157 HDEESHKKFLQQFYDICSKHGVMLSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPK 216
                H + L    ++  K  +  + +K    T  + FLG   +          V+ +  
Sbjct: 580 ESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRD 639

Query: 217 FPDEGLTIKQIQQFLGILNYIRDFIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKK 275
           +P    T+ +++ F G+  + R F    S   + L+++++K+    W K Q EA + LK 
Sbjct: 640 WPSP-KTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKD 698

Query: 276 AAQNPPPLKIPGDGKRI-LQTDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTT 334
              N P L +    K   ++ DAS     AVL+++   QKL     S +   A L+Y T 
Sbjct: 699 KLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQD---QKL-IAFFSEKLGGATLNYPTY 754

Query: 335 FKETLAVKYGIKRFDFHLRGHHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSLYDF 394
            KE  A+   ++R+  +L    F +  D+ S   +   K +   N +  R  E+   + +
Sbjct: 755 DKELYALVRALQRWQHYLWPKVFVIHTDHES---LKHLKGQQKLNKRHARWVEFIETFAY 811

Query: 395 SVKHVQGSKNLIPDYLSR 412
            +K+ +G  N++ D LS+
Sbjct: 812 VIKYKKGKDNVVADALSQ 829


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  123 bits (308), Expect = 2e-28
 Identities = 111/433 (25%), Positives = 186/433 (42%), Gaps = 56/433 (12%)

Query: 1    MTPSELRAAQEECQQLIKQGLIEP-TKSEWACTAFYVNKRSEQVRQKK------------ 47
            + P+     ++E  +L+  G+I P + S W      V K+      K             
Sbjct: 907  LNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTIT 966

Query: 48   --RLVVDYRPLNQFIKDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKT 105
              R+ ++YR LN   + + FPLP I  +   + N   +   D  SGF+Q+ + P D+ KT
Sbjct: 967  GHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKT 1026

Query: 106  AFCIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPILHTSL-VYIDDVLLFSHDEESHKK 164
             F  P   + +  +PFGL  AP+ FQ+ MT IF  ++   + V++DD  ++     S   
Sbjct: 1027 TFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLL 1086

Query: 165  FLQQFYDICSKHGVMLSSRKSQIATKEVDFLGMHFT-EGKFVPQPHIVEELPKFPDEGLT 223
             L +    C +  ++L+  K     +E   LG   + EG  V +  I   +   P +  T
Sbjct: 1087 NLCRVLKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPK--T 1144

Query: 224  IKQIQQFLGILNYIRDFIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPP 282
            +K I+ FLG   + R FI   SK    L+++L K     +  E   A K +K+A    P 
Sbjct: 1145 VKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAP- 1203

Query: 283  LKIPGDGKRILQTDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVK 342
                     I+Q    D  +  + ++                 DA++ Y TT KE LAV 
Sbjct: 1204 ---------IVQAPNWDFPFEIITMD-----------------DAQVRYATTEKELLAVV 1237

Query: 343  YGIKRFDFHLRGHHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSL---YDFSVKHV 399
            +  ++F  +L G    +  D+++   +   K+  P      RL  W  L   +D  +   
Sbjct: 1238 FAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKP------RLLRWILLLQEFDMEIVDK 1291

Query: 400  QGSKNLIPDYLSR 412
            +G +N + D+LSR
Sbjct: 1292 KGIENGVADHLSR 1304


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  119 bits (297), Expect = 4e-27
 Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 9/312 (2%)

Query: 7   RAAQEECQQLIKQGLIEPTK-SEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIKDDKF 65
           +A  +E  +L+K G I   +  +W      V K++     K R+ +D+  LN+    D F
Sbjct: 478 KAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNG----KDRVCIDFTDLNKACPKDSF 533

Query: 66  PLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKV 125
           PLP I  L        + S  D  SG+ Q+ ++P+D+ KT F      Y + V+PFGL+ 
Sbjct: 534 PLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPFGLRN 593

Query: 126 APSLFQKAMTKIF-EPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRK 184
           A + + + + K+F E +  T  VYIDD+L+ S  +E H K L++ + I +++ + L+  K
Sbjct: 594 AGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAK 653

Query: 185 SQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHV 244
                   +FLG   T+      P+ +      P      K++Q+  G +  +  FI   
Sbjct: 654 CTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSP-KNFKEVQRLTGRIAALNRFISRS 712

Query: 245 SKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIPG-DGKRILQTDASDHYW 302
           +  +    ++L+ N    W ++  EA   LK    +PP L  P  D K  L    S+H  
Sbjct: 713 TDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAV 772

Query: 303 AAVLIEEIDGQK 314
           + VLI E  G++
Sbjct: 773 SGVLIREDRGEQ 784


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  103 bits (257), Expect = 2e-22
 Identities = 97/401 (24%), Positives = 168/401 (41%), Gaps = 35/401 (8%)

Query: 3    PSELRAAQEECQQLIKQG-LIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
            P   +   EE ++L+  G ++E    +W      V K++     K R+ +D+  LN+   
Sbjct: 792  PDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNG----KWRVCIDFTDLNKACP 847

Query: 62   DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
             D FPLP I  L        + S  D  SG+ Q+ +   DR KT F      Y + V+PF
Sbjct: 848  KDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPF 907

Query: 122  GLKVAPSLFQKAMTKIF-EPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVML 180
            GLK A + + + + ++F + + H+  VYIDD+L+ S   E H   L+Q + + +++ + L
Sbjct: 908  GLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKL 967

Query: 181  SSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDF 240
            +  K        +FLG   T       P  +  +   P    T +++Q+ +G +  +  F
Sbjct: 968  NPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNT-REVQRLIGRIAALNRF 1026

Query: 241  IPHVSKYTSKLSKMLRKNAPPWGKEQTEAIKFLKKAAQNPPPLKIPGDGKRILQTDASDH 300
            I   +       ++LR N      E+ E  + L                   L    S  
Sbjct: 1027 ISRSTDKCLPFYQLLRANKRFEWDEKCEEGETL------------------YLYIAVSTS 1068

Query: 301  YWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQ 360
              + VL+ E  G++    + S     AEL Y T  K   AV    ++   + + +  EV 
Sbjct: 1069 AVSGVLVREDRGEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEV- 1127

Query: 361  IDNSSFPKMLEFKNKTPPNPQILRLKEW---FSLYDFSVKH 398
            + N     +L   +++       RL +W    S YD + K+
Sbjct: 1128 LTNQPLRTILHSPSQSG------RLAKWAVELSEYDIAYKN 1162


>At4g07600
          Length = 630

 Score =  102 bits (253), Expect = 5e-22
 Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 48  RLVVDYRPLNQFIKDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAF 107
           R+ +DYR LN   ++D FPLP    +   + N   +   D  SGF+Q+ + P D  KT F
Sbjct: 356 RMCIDYRNLNAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIPIHPNDHEKTTF 415

Query: 108 CIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPILHTSL-VYIDDVLLFSHDEESHKKFL 166
             P   + +  +PFGL  AP+ FQ+ MT IF  I+   + V++DD  ++     S    L
Sbjct: 416 TCPYGTFAYERMPFGLCNAPATFQRCMTSIFSDIIEEMVEVFMDDFSVYGPSFSSCLLNL 475

Query: 167 QQFYDICSKHGVMLSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQ 226
            +    C +  ++L+  K     KE   LG            H + E     D+G     
Sbjct: 476 GRVLTRCEETNLVLNWEKCHFMVKEGIMLG------------HKISEKGIEVDKGC---- 519

Query: 227 IQQFLGILNYIRDFIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKI 285
              FLG   + R FI   SK    L+++L K     + ++  ++   +K+A  + P ++ 
Sbjct: 520 ---FLGHAGFYRRFIKDFSKIARPLTRLLCKETEFEFDEDCPKSFHTIKEALVSAPVVRA 576

Query: 286 PG-DGKRILQTDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKE 337
              D    +  DA D+   AVL ++ID +     +AS    +A+  Y TT KE
Sbjct: 577 TNWDYPFEIMCDALDYAVGAVLGQKIDKKLHVIYYASRTLDEAQGRYATTEKE 629


>At4g03650 putative reverse transcriptase
          Length = 839

 Score =  100 bits (249), Expect = 1e-21
 Identities = 82/304 (26%), Positives = 139/304 (44%), Gaps = 17/304 (5%)

Query: 101 DRPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPIL-HTSLVYIDDVLLFSHDE 159
           D  KTAF     H+++ V+PFGL  AP+ F + M  +F+  L    +++IDD+L++S   
Sbjct: 520 DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSP 579

Query: 160 ESHKKFLQQFYDICSKHGVMLSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPD 219
           E H+  L++  +   +  +     K     +E+ FLG   +       P  +E +  +P 
Sbjct: 580 EEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWP- 638

Query: 220 EGLTIKQIQQFLGILNYIRDFIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQ 278
                 +I+ FLG+  Y R FI   +     ++K+  K+ P  W  E  E    LK+   
Sbjct: 639 RPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLT 698

Query: 279 NPPPLKIPGDGK-RILQTDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKE 337
           + P L +P  G+  ++ TDAS       L++   G+ +   +AS Q +  E +Y T   E
Sbjct: 699 STPVLALPEHGEPYMVYTDASGVGLGCALMQR--GKVI--AYASRQLRKHEGNYPTHDLE 754

Query: 338 TLAVKYGIKRFDFHLRGHHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSL---YDF 394
             AV + +K +  +L G   +V  D+ S   +      T P    LR + W  L   YD 
Sbjct: 755 MAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIF-----TQPELN-LRQRRWMELVADYDL 808

Query: 395 SVKH 398
            + +
Sbjct: 809 EIAY 812


>At2g14040 putative retroelement pol polyprotein
          Length = 841

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 111/440 (25%), Positives = 179/440 (40%), Gaps = 95/440 (21%)

Query: 4   SELR-AAQEECQQLIKQGLIEP-TKSEWACTAFYVNKRSEQVRQKK-------------- 47
           S LR   ++E  +L+  G+I P + S W      V K+   +  K               
Sbjct: 384 SNLRDVVKKEIMKLLDAGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGH 443

Query: 48  RLVVDYRPLNQFIKDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAF 107
           R+ +DYR LN   + D FPL  I  +   + N   +   D   GF+Q+ + P D+ KT F
Sbjct: 444 RMCIDYRKLNSATRKDNFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTF 503

Query: 108 CIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPILHTSL-VYIDDVLLFSHDEESHKKFL 166
             P   + +  +PFGL  AP+ FQ  M  IF  ++   + V+IDD L+    E+ H    
Sbjct: 504 TCPYGTFAYRRMPFGLCNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKH---- 559

Query: 167 QQFYDICSKHGVMLSSRKSQIATKEVDFLGMHFTE-GKFVPQPHIVEELPKFPDEGLTIK 225
                      ++L+  KS    ++   LG   +E G  V +  I               
Sbjct: 560 -----------LVLNWEKSHFMVRDGIVLGHKISEKGVEVDRAKI--------------- 593

Query: 226 QIQQFLGILNYIRDFIPHVSKYTSKLSKML-RKNAPPWGKEQTEAIKFLKKAAQN----- 279
           +I +FLG   + R FI   SK     +++L ++    +     +A   +K++  +     
Sbjct: 594 EIMRFLGHAGFYRRFIKDFSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQ 653

Query: 280 PPPLKIPGDGKRILQTDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETL 339
           PP  ++P +    +  DASD+   AVL               GQ KD +LH         
Sbjct: 654 PPEWELPFE----VICDASDYVVGAVL---------------GQRKDKKLH--------- 685

Query: 340 AVKYGIKRFDFHLRGHHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSL---YDFSV 396
           A+ Y  +  D    G    V   +++   +L  K+  P      RL  W  L   +D  +
Sbjct: 686 AIYYASRTLD----GAQVIVHTVHAALRYLLSKKDAKP------RLLRWILLLQDFDLEI 735

Query: 397 KHVQGSKNLIPDYLSRPKQQ 416
           K  +G +N + D LSR + Q
Sbjct: 736 KDKKGIENEVADNLSRLRVQ 755


>At2g13330 F14O4.9
          Length = 889

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 73/271 (26%), Positives = 122/271 (44%), Gaps = 3/271 (1%)

Query: 22  IEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIKDDKFPLPKIYSLYSYIKNAH 81
           ++  K  +A ++  +   S +   K R+ +D+R LN+    D FPLP I  L        
Sbjct: 269 LKENKDSFAWSSANLQGISLEKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHE 328

Query: 82  IFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKAMTKIF-EP 140
             S  D   G+ Q+ +    + KTAF      Y + V+PFGLK A + +Q+ + ++F + 
Sbjct: 329 KLSFMDAFYGYNQILMRRDGQEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQ 388

Query: 141 ILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQIATKEVDFLGMHFT 200
           +  T  VYIDD+L+ S  E+ H   L++ + I  K  + L+  K     +  +FL    T
Sbjct: 389 LGKTIEVYIDDMLVKSAHEKDHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVT 448

Query: 201 EGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKYTSKLSKMLRKNAP 260
           E      P  +    + P   +  +++Q+  G +  +  FI   +       + LRK   
Sbjct: 449 ERGIEANPKQIAAFIEMPSPKMA-REVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKE 507

Query: 261 -PWGKEQTEAIKFLKKAAQNPPPLKIPGDGK 290
             W K+  +A K LK     PP L  P  G+
Sbjct: 508 FDWNKDCEQAFKQLKAYLTEPPILAKPEKGE 538


>At2g14380 putative retroelement pol polyprotein
          Length = 764

 Score = 95.1 bits (235), Expect = 6e-20
 Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 7/256 (2%)

Query: 3   PSELRAAQEECQQLIKQG-LIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
           P   +A  +E  +L+  G ++E    EW      V K+++    K R+ +D+  LN+   
Sbjct: 507 PERSKAVNDEVDKLLDAGSIVEVKYPEWLANPVVVKKKND----KWRVCIDFTDLNKACP 562

Query: 62  DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
            D FPLP I  +        + S  D  SG+ Q+ +   D+ KT+F I    Y + V+PF
Sbjct: 563 KDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHKDDQEKTSFIIDRGTYCYKVMPF 622

Query: 122 GLKVAPSLFQKAMTKIFEPIL-HTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVML 180
           GLK   + +Q+ + ++F P L  T  VYIDD+L+ S     H   L+  ++  +K+ + L
Sbjct: 623 GLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSTRSADHIDHLKACFETLNKYNMKL 682

Query: 181 SSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDF 240
           +  K        +FLG   T+      P  +  +          K++Q+  G +  +  F
Sbjct: 683 NPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAILDL-QSPRNKKEVQRLTGRIAGLNRF 741

Query: 241 IPHVSKYTSKLSKMLR 256
           I   +  +    ++LR
Sbjct: 742 IARSTDKSLPFYQLLR 757


>At2g10690 putative retroelement pol polyprotein
          Length = 622

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 86/317 (27%), Positives = 146/317 (45%), Gaps = 17/317 (5%)

Query: 102 RPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPILHTSL-VYIDDVLLFSHDEE 160
           + KT F  PN  + +  + FGL  AP  FQ++MT IF   +   + V++DD   FS    
Sbjct: 163 KKKTTFTCPNGTFAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSGFSSCLL 222

Query: 161 SHKKFLQQFYDICSKHGVMLSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDE 220
           +  + L++    C +  ++L+  K      E   LG H   GK +       ++      
Sbjct: 223 NLCRVLER----CEETNLVLNWEKCHFMVHEGIVLG-HKISGKGIEVDKAKIDVMIQLQP 277

Query: 221 GLTIKQIQQFLGILNYIRDFIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQN 279
             T+K I+ FLG   + R FI   SK    L+++L K     + ++  +A   +K+   +
Sbjct: 278 PKTVKDIRSFLGHAEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVS 337

Query: 280 PPPLKIPG-DGKRILQTDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKET 338
            P  + P  D    +  DA D+   AVL ++ID +     +AS    +A+  Y T  KE 
Sbjct: 338 APIFQAPNWDHPFEIMCDAFDYAVGAVLDQKIDDKLHVIYYASRTMDEAQTRYATIEKEL 397

Query: 339 LAVKYGIKRFDFHLRGHHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSL---YDFS 395
           LAV +  ++   +L G   +V ID+++  + +  K +T       RL  W  L   +D  
Sbjct: 398 LAVVFAFEKIRSYLVGFKVKVYIDHAAL-RHIYAKKETKS-----RLLRWILLLQEFDME 451

Query: 396 VKHVQGSKNLIPDYLSR 412
           +   +G +N + D+LSR
Sbjct: 452 IIDKKGVENGVADHLSR 468


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,136,089
Number of Sequences: 26719
Number of extensions: 456474
Number of successful extensions: 1183
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 68
length of query: 418
length of database: 11,318,596
effective HSP length: 102
effective length of query: 316
effective length of database: 8,593,258
effective search space: 2715469528
effective search space used: 2715469528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)