BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.2
(264 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49450 putative protein 35 0.054
At1g53360 putative disease resistance protein RPP8 gb|AAC83165.1 31 0.60
At1g30920 F17F8.21 30 1.0
At1g30930 F17F8.20 30 1.3
At2g17310 unknown protein 29 2.3
At2g16810 unknown protein 29 2.3
At1g53790 29 2.3
At1g47810 hypothetical protein 29 2.3
At2g40910 unknown protein 29 3.0
At5g10340 putative protein 28 3.9
At1g55070 hypothetical protein 28 3.9
At1g47730 hypothetical protein 28 3.9
At1g47800 hypothetical protein 28 5.0
At5g65850 unknown protein 28 6.6
At5g23110 putative protein 28 6.6
At2g16450 hypothetical protein 28 6.6
At1g60370 28 6.6
At1g52570 28 6.6
At5g36990 putative transposase 27 8.6
At2g16220 hypothetical protein 27 8.6
>At3g49450 putative protein
Length = 397
Score = 34.7 bits (78), Expect = 0.054
Identities = 45/182 (24%), Positives = 77/182 (41%), Gaps = 36/182 (19%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGKRVDYTRIPR-------FCEEQA--DHML----SVGDL 52
D++ + R+PA RF+CV D+ + R F + + H+L + G
Sbjct: 35 DLMVEILSRVPAKSAARFRCVSN--DWNSLLRSPYLTNLFLKRSSARPHLLITFQAEGKW 92
Query: 53 HIFTSP---VSDYHQVTGVGLHNLLEDGPAAGVPTDF-FNVVARSGKILSSWNGLIVVRL 108
F+SP +SD + NL+ VP D+ F V ++ + N ++ R
Sbjct: 93 SFFSSPEYLISDQNS-------NLVVVDNHMDVPKDYSFGVCVPVCGLMCTSNEWVLSR- 144
Query: 109 RWKKVLRLLICNPVTSSWAPL-RTRCGEYDANANVNIIIIPATAPTRNDYRLLSVTRQNK 167
K+ R++ICNP T + L + R + N+I P Y++L +T + K
Sbjct: 145 --KRDARMMICNPSTGQFKSLPKVR------SCRGNVITYIGYNPIEKQYKVLCMTIREK 196
Query: 168 IF 169
F
Sbjct: 197 PF 198
>At1g53360 putative disease resistance protein RPP8 gb|AAC83165.1
Length = 343
Score = 31.2 bits (69), Expect = 0.60
Identities = 27/119 (22%), Positives = 50/119 (41%), Gaps = 4/119 (3%)
Query: 11 VFHRLPAYIVCRFKCVGKRVDYTRIPRFCEEQADHMLSVGDLHIFTSPVSDYHQVTGVGL 70
+F R+PA + RF+CV + + R P E+ +S L D +
Sbjct: 1 MFSRVPAKSIARFRCVSESIH--RRPDVTEQSLTKSMSRPRLLFALEVNKDLLFFSSPQP 58
Query: 71 HNLLEDGPAAGVPTDFFNVVARSGKILSSWNGLIVVRLRWKKVLRLLICNPVTSSWAPL 129
N ++ P F + +I ++ GL+ ++ +W + +ICNPV+ + L
Sbjct: 59 QNPYDNSSLVATPYKRFPKYLPT-RICTTLGGLVFLQ-KWLRKKTRVICNPVSGDYITL 115
>At1g30920 F17F8.21
Length = 1201
Score = 30.4 bits (67), Expect = 1.0
Identities = 41/143 (28%), Positives = 63/143 (43%), Gaps = 37/143 (25%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGK-------RVDYTRI--------PR--FCEEQADHMLS 48
D++Y + RLPA V R CV K R D+T + PR F ++A+
Sbjct: 8 DLVYEILLRLPAKSVARCSCVSKLRRSILSRQDFTELFLTKSSARPRLLFGVKRAN---G 64
Query: 49 VGDLHIFTSPVSDYHQVTGVGLHNLLEDGPAAGVPTDFFNVVARSGKILSSWNGLIV--- 105
G T P + Y + + V AA T F V++R +I S +GLI
Sbjct: 65 EGLFFSSTQPRNSYEKSSLV---------VAADFHTKFSEVISR--EICSYASGLIYLSD 113
Query: 106 --VRLRWKKVLRLLICNPVTSSW 126
+ + + V+R ICNP+T ++
Sbjct: 114 MRISVNDEDVVR-AICNPITGNY 135
>At1g30930 F17F8.20
Length = 708
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGKR 29
D++Y + RLPA V R +CV KR
Sbjct: 8 DLIYEILSRLPAKSVARCRCVSKR 31
>At2g17310 unknown protein
Length = 370
Score = 29.3 bits (64), Expect = 2.3
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 170 PPYVLKEYNQIADQWQVLNPDMNLGDRKLNISKPAIVNEWIYFMSDNYHYMNFIDDATLM 229
PP L + ++ W L D + L+ S+P E+I + + ++ ID +
Sbjct: 16 PPISLVRFRTVSKHWNSLFNDKTFINNHLSRSRP----EFIILTNSKIYSVDIIDHNNID 71
Query: 230 PYIMAYS------HTDHTSVRLDLPNNALEYLFH 257
P I + H+ T + + N E+LF+
Sbjct: 72 PTIRLHEIPTYDIHSRGTDLNRTIINTCDEFLFY 105
>At2g16810 unknown protein
Length = 295
Score = 29.3 bits (64), Expect = 2.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 5 QDVLYHVFHRLPAYIVCRFKCVGK 28
QD+L + RLP V RFKCV K
Sbjct: 43 QDLLIEILTRLPPKSVMRFKCVSK 66
>At1g53790
Length = 381
Score = 29.3 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (68%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGK 28
D+L +F R+PA + RF+CV K
Sbjct: 22 DLLMDIFSRVPAKSIARFRCVSK 44
>At1g47810 hypothetical protein
Length = 351
Score = 29.3 bits (64), Expect = 2.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGK 28
DVL+ +F LPA + RF CV K
Sbjct: 17 DVLFEIFLNLPAKFLARFVCVSK 39
>At2g40910 unknown protein
Length = 449
Score = 28.9 bits (63), Expect = 3.0
Identities = 32/119 (26%), Positives = 45/119 (36%), Gaps = 6/119 (5%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGKRVDYTRIPR-FCEEQADHMLSVGDLHIFTSPVSDYHQ 64
D+L + RLPA + RFKC+ K+ R FC + HI V Q
Sbjct: 72 DLLMEIVMRLPAKSMVRFKCISKQWSSLISCRYFCNSLFTSVTRKKQPHIHMCLVDHGGQ 131
Query: 65 VTGVGLHNLLEDGPAAGVPTDFFNVVARSGKILSSWNGLIVVRLRWKKVLRLLICNPVT 123
+ L + D V D ++ G L+ GL+ +R K I NP T
Sbjct: 132 RVLLSLSSTSPDNTCYVVDQD-LSLTGMGGFFLNLVRGLLCFSVREK----ACIYNPTT 185
>At5g10340 putative protein
Length = 445
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Query: 9 YHVFHRLPAYIVCRFKCVGKR-VDYTRIPRFCEEQADHML--SVGDLHIFTSPVSD 61
YH+ RL + +FK V K+ + + P F E Q H L S GD H+ + D
Sbjct: 76 YHIMVRLDVKTLLKFKSVSKQWMSTIQSPSFQERQLIHHLSQSSGDPHVLLVSLYD 131
>At1g55070 hypothetical protein
Length = 393
Score = 28.5 bits (62), Expect = 3.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 82 VPTDFFNVVARSGKILSSWNGLIVVRLRWKKVLRLLICNPVTSSWAPLRTRCGEYDANAN 141
+P DF +ILSS +GL+ + K +I NP+T + L +A+A
Sbjct: 122 IPRDF-------SQILSSVHGLVCYHRKIKNDTVFVIYNPITGQYVTLPI----LEAHAT 170
Query: 142 VNIIIIPATAPTRNDYRLLSVT 163
+N I P +++L VT
Sbjct: 171 INYFAI-GYDPINKRFKVLCVT 191
>At1g47730 hypothetical protein
Length = 391
Score = 28.5 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGK 28
D+ +F RLPA V RF+CV K
Sbjct: 28 DLTSEIFSRLPAKSVVRFRCVSK 50
>At1g47800 hypothetical protein
Length = 387
Score = 28.1 bits (61), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGK 28
DVL+ + +LPA V RF CV K
Sbjct: 17 DVLFEILVKLPAKSVARFLCVSK 39
>At5g65850 unknown protein
Length = 392
Score = 27.7 bits (60), Expect = 6.6
Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 34/146 (23%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGK-------RVDYTRIPRFCEEQADHML----SVGDLHI 54
D++ + RLPA + +CV K R D+T + +L G+L
Sbjct: 38 DIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTRSLHRPQLLFCCKKDGNLFF 97
Query: 55 FTSP--VSDYHQVTGVGLHNLLEDGPAAGVPTDFFNVVARSGKILSSWNGLIVVRLRWKK 112
F+SP + Y + + L N + KI NGLI + +
Sbjct: 98 FSSPQLQNPYENSSAISLKNF-----------------SLCYKISRPVNGLICFKRKEMN 140
Query: 113 VLRLLICNPVT----SSWAPLRTRCG 134
+ICNP T S P++T G
Sbjct: 141 ETVTVICNPSTGHTLSLPKPMKTSIG 166
>At5g23110 putative protein
Length = 4706
Score = 27.7 bits (60), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (63%)
Query: 92 RSGKILSSWNGLIVVRLRWKKVLRLLIC 119
RSGK+ S+WN L++ + RLL+C
Sbjct: 398 RSGKVRSAWNRLLLEDVVAPSFARLLLC 425
>At2g16450 hypothetical protein
Length = 427
Score = 27.7 bits (60), Expect = 6.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGKR 29
D++ + RLPA V RF CV KR
Sbjct: 9 DLILEILSRLPAKSVRRFHCVSKR 32
>At1g60370
Length = 283
Score = 27.7 bits (60), Expect = 6.6
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGK 28
D++ + RLPA V RF+CV K
Sbjct: 13 DLIIEIHSRLPAESVARFRCVSK 35
>At1g52570
Length = 810
Score = 27.7 bits (60), Expect = 6.6
Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Query: 46 MLSVGDLHIFTSPV--SDYHQVTGVGLHNLLEDGPAAGVP 83
M +GD+ I SPV S+ H V V L ++ G AAG P
Sbjct: 439 MRELGDIIIPPSPVLFSEDHDVWNVQLFRSIDGGAAAGFP 478
>At5g36990 putative transposase
Length = 283
Score = 27.3 bits (59), Expect = 8.6
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 171 PYVLKEYNQIADQWQVLNPDMNLGDR 196
P+ EY+++ + W+ LNPD+ R
Sbjct: 133 PFTYVEYDRVREIWKYLNPDVKFFSR 158
>At2g16220 hypothetical protein
Length = 407
Score = 27.3 bits (59), Expect = 8.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 6 DVLYHVFHRLPAYIVCRFKCVGKR 29
D++ V RLP V RF CV KR
Sbjct: 9 DLILEVLSRLPLKSVARFHCVSKR 32
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,385,466
Number of Sequences: 26719
Number of extensions: 267888
Number of successful extensions: 754
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 26
length of query: 264
length of database: 11,318,596
effective HSP length: 97
effective length of query: 167
effective length of database: 8,726,853
effective search space: 1457384451
effective search space used: 1457384451
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0476b.2