BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476a.7
         (109 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g16830 unknown protein                                              58  9e-10
At1g78895 unknown protein                                              57  1e-09
At4g30790 putative protein                                             28  0.98
At1g15020 thioredoxin, putative                                        27  2.2

>At1g16830 unknown protein
          Length = 152

 Score = 57.8 bits (138), Expect = 9e-10
 Identities = 32/44 (72%), Positives = 34/44 (76%)

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           I QDT   IVA LANTV +AESVLRVAATGHDKRL+ KV   LY
Sbjct: 63  ISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVKVVICLY 106


>At1g78895 unknown protein
          Length = 164

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 31/44 (70%), Positives = 33/44 (74%)

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           I QDT   IVA LANTV +AE VLRVAATGHDKRL+ KV   LY
Sbjct: 66  ISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLY 109


>At4g30790 putative protein
          Length = 1148

 Score = 27.7 bits (60), Expect = 0.98
 Identities = 11/30 (36%), Positives = 19/30 (62%)

Query: 4   SGCGSSGVAIYQDTVKAIVACLANTVDSAE 33
           S C  SG+A + D+++ +   LAN+V+  E
Sbjct: 911 SVCAGSGIADFADSLRTLAQALANSVNENE 940


>At1g15020 thioredoxin, putative
          Length = 528

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 26 ANTVDSAESVLRVAATGHDKRLYFKVSPSLY*ILTHFVHVWFSVC 70
          +N  D  ++ + + AT  D    F+ SP+ Y +L  F H W   C
Sbjct: 34 SNVADQKDNAIELNATNFDS--VFQDSPAKYAVLEFFAH-WCPAC 75


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.366    0.161    0.597 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,882,393
Number of Sequences: 26719
Number of extensions: 51305
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 4
length of query: 109
length of database: 11,318,596
effective HSP length: 85
effective length of query: 24
effective length of database: 9,047,481
effective search space: 217139544
effective search space used: 217139544
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 52 (24.6 bits)