BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476a.1
         (57 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g13970 hypothetical protein                                         75  6e-15
At1g60560 unknown protein                                              62  5e-11
At5g40290 putative protein                                             26  3.3
At5g40270 putative protein                                             26  4.3
At5g03330 putative protein                                             26  4.3
At1g55620 CLC-f chloride channel protein                               25  7.3

>At4g13970 hypothetical protein
          Length = 675

 Score = 75.1 bits (183), Expect = 6e-15
 Identities = 38/56 (67%), Positives = 45/56 (79%)

Query: 1   RRRRVIYRSTHELDANDVVSISMWVESHLNCVFFYEDFSNSDPFILGIQTE*QLQR 56
           R  R I RST+ELD +D VSISMWVESH + VFF+E FS++DPF LGIQTE QLQ+
Sbjct: 163 RLERSIRRSTYELDEDDDVSISMWVESHQSHVFFFEGFSDTDPFSLGIQTEWQLQQ 218


>At1g60560 unknown protein
          Length = 703

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 28/52 (53%), Positives = 38/52 (72%)

Query: 5   VIYRSTHELDANDVVSISMWVESHLNCVFFYEDFSNSDPFILGIQTE*QLQR 56
           +I RSTHELD +D  SI +W E +   +FFY++ S +D F+LGIQTE QLQ+
Sbjct: 234 IIKRSTHELDLDDQASIKIWAERNKKSIFFYQESSETDQFMLGIQTEWQLQQ 285


>At5g40290 putative protein
          Length = 448

 Score = 26.2 bits (56), Expect = 3.3
 Identities = 8/31 (25%), Positives = 21/31 (66%)

Query: 16  NDVVSISMWVESHLNCVFFYEDFSNSDPFIL 46
           N  + ++   E+ L C+ FY+D+++++ F++
Sbjct: 367 NVKIDLARGRENPLECINFYKDYNSAEKFVI 397


>At5g40270 putative protein
          Length = 407

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 8/31 (25%), Positives = 20/31 (63%)

Query: 16  NDVVSISMWVESHLNCVFFYEDFSNSDPFIL 46
           N  + ++   E+ L C+ FY+D+ +++ F++
Sbjct: 316 NVKIDLARGRENPLECINFYKDYDSAEKFVI 346


>At5g03330 putative protein
          Length = 356

 Score = 25.8 bits (55), Expect = 4.3
 Identities = 8/29 (27%), Positives = 16/29 (54%)

Query: 14  DANDVVSISMWVESHLNCVFFYEDFSNSD 42
           ++  V+ +S W E H N ++   D S ++
Sbjct: 316 ESKGVIFLSFWAEVHYNAIYLNRDTSETE 344


>At1g55620 CLC-f chloride channel protein
          Length = 781

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 26  ESHLNCVFFYEDFSNSDPFILGIQTE*QLQR 56
           ESH NC+   +D    D F+ GI T   ++R
Sbjct: 643 ESHQNCIMVVDD----DDFLAGILTHGDIRR 669


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.335    0.144    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,224,223
Number of Sequences: 26719
Number of extensions: 34364
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 6
length of query: 57
length of database: 11,318,596
effective HSP length: 33
effective length of query: 24
effective length of database: 10,436,869
effective search space: 250484856
effective search space used: 250484856
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.6 bits)