BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0403.9
         (139 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g79040 unknown protein                                             209  5e-55
At5g61990 unknown protein                                              28  2.0
At3g28780 histone-H4-like protein                                      28  2.0
At3g12340 hypothetical protein                                         28  2.0
At1g73080 unknown protein                                              27  3.4
At4g33515 unknown protein                                              27  4.5
At3g15400 anther development protein, ATA20                            26  5.9
At3g04310 hypothetical protein                                         26  5.9
At1g56020 unknown protein                                              26  7.7
At1g21750 putative disulfide isomerase                                 26  7.7

>At1g79040 unknown protein
          Length = 140

 Score =  209 bits (531), Expect = 5e-55
 Identities = 102/140 (72%), Positives = 123/140 (87%), Gaps = 1/140 (0%)

Query: 1   MASSVM-ASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMN 59
           MA+SVM +SV+LKPAGF++EK++ RGLPSL+R+  SF++VASG KKIKTD P+G  G M+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 60  LRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 119
           LR+GVDASGRK +G GVY+YVDKYGANVDGYSPIY+  +WS +GDVY GG TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 120 LLGLLAGGALLVYNTSALSQ 139
           L G+LAGGALLVYNTSAL+Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140


>At5g61990 unknown protein
          Length = 974

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 69  RKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGD--VYAGGTTGLAIWAVTLLGLLAG 126
           R+ RGKG+   V  YG  ++G+S + + +  S   D  V  G T  + I+ + L G    
Sbjct: 616 REMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRS 675

Query: 127 GAL 129
           G +
Sbjct: 676 GEI 678


>At3g28780 histone-H4-like protein
          Length = 614

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 8   SVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGT---GGGMNLRNGV 64
           S  +   G +  +S+  G  S   + A+    A G  +  + T   T   GGG     GV
Sbjct: 443 SSGVASGGSTGSESASAGAASGGSTEANGGAAAGGSTEAGSGTSTETSSMGGGSAAAGGV 502

Query: 65  D--ASGRKPRGKGVYQYVDKYGANVDGYS--PIYDTKDWSPTGDVYAGGTTGLA 114
              +SG      G  +      A   G S     D+   SPTG   AGG +G A
Sbjct: 503 SESSSGGSTAAGGTSESASGGSATAGGASGGTYTDSTGGSPTGSPSAGGPSGSA 556


>At3g12340 hypothetical protein
          Length = 647

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 23/86 (26%), Positives = 37/86 (42%), Gaps = 3/86 (3%)

Query: 53  GTGGGMNLRNGVDASGRKP-RGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTT 111
           GTG    +R     S   P +G G+Y         V G   +     +SP  +   G   
Sbjct: 74  GTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLKV--EPGFSPFSERINGRIA 131

Query: 112 GLAIWAVTLLGLLAGGALLVYNTSAL 137
           GL + A+ L+ L  G ++L Y+T ++
Sbjct: 132 GLGLTALLLVELATGKSVLNYHTPSV 157


>At1g73080 unknown protein
          Length = 1123

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 24/67 (35%), Positives = 32/67 (46%), Gaps = 7/67 (10%)

Query: 54  TGGGMNLRNGVDASG---RKPRGKGVYQYVDKYGANVD---GYSPIYDTKDWSPTGDVYA 107
           T G +  RN +   G   RK  G  +Y+Y+ K G+  D   G SP  +  DWS   +V  
Sbjct: 875 TIGKVRHRNLIKLEGFWLRKDDGLMLYRYMPK-GSLYDVLHGVSPKENVLDWSARYNVAL 933

Query: 108 GGTTGLA 114
           G   GLA
Sbjct: 934 GVAHGLA 940


>At4g33515 unknown protein
          Length = 237

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 26/68 (38%), Positives = 30/68 (43%), Gaps = 15/68 (22%)

Query: 26  LPSLSRSSASFRVVASGGKKIKTDTPYGTG-GGMNLRNGVDASGRKPRGKGVYQYVDKYG 84
           L  LS SS SFR ++SGG         G+G GG N  +G    G    G        K G
Sbjct: 89  LECLSSSSPSFRSISSGG---------GSGFGGYNGGSGGGGGGGSESGDS----KSKLG 135

Query: 85  ANV-DGYS 91
           AN  DG S
Sbjct: 136 ANASDGVS 143


>At3g15400 anther development protein, ATA20
          Length = 416

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 37  RVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDT 96
           R   SGG  +      G+ GG     G+ +SG    G+G+        +   G+     +
Sbjct: 209 RGYGSGGSGVGYGVGIGSSGGSGFGEGIGSSGGNGFGEGI------GSSGGSGFGEGIGS 262

Query: 97  KDWSPTGD-VYAGGTTGLAI 115
              S  G+ + +GG TG+ I
Sbjct: 263 SGGSGFGEGIGSGGGTGIGI 282


>At3g04310 hypothetical protein
          Length = 269

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 22/69 (31%), Positives = 29/69 (41%), Gaps = 1/69 (1%)

Query: 3   SSVMA-SVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLR 61
           + VMA +V L  +  SL  S V   PS+     S R   S    + +        G N+R
Sbjct: 122 AGVMALAVPLVQSVLSLVVSKVWSRPSIRSMKRSRRDTFSRSASVSSGRTRKARQGGNMR 181

Query: 62  NGVDASGRK 70
            GVD  G K
Sbjct: 182 GGVDKGGYK 190


>At1g56020 unknown protein
          Length = 398

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 27  PSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKP 71
           PS+  SS+S   + S G  +  D+P     G  + +G++ S   P
Sbjct: 266 PSVDGSSSSSACIESRGLTVTADSPRLNASGKIVFHGLERSSSSP 310


>At1g21750 putative disulfide isomerase
          Length = 501

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 2   ASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTD 49
           +S V+A +      F  +   V+G P++   SAS  VV   G + K D
Sbjct: 425 SSVVIAKLDATANDFPKDTFDVKGFPTIYFKSASGNVVVYEGDRTKED 472


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.312    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,281,127
Number of Sequences: 26719
Number of extensions: 154047
Number of successful extensions: 293
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 10
length of query: 139
length of database: 11,318,596
effective HSP length: 89
effective length of query: 50
effective length of database: 8,940,605
effective search space: 447030250
effective search space used: 447030250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)