BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0399.7
(167 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34140 putative DOF zinc finger protein 170 4e-43
At1g29160 ascorbate oxidase promoter-binding protein, putative 166 7e-42
At3g47500 H-protein promoter binding factor-2a 129 6e-31
At5g62430 H-protein promoter binding factor-like protein 128 1e-30
At5g39660 unknown protein 127 3e-30
At1g69570 H-protein promoter binding factor-2b, putative 126 6e-30
At1g26790 H-protein promoter binding factor-2b, putative 124 2e-29
At4g24060 unknown protein 104 3e-23
At5g02460 putative zinc finger protein 103 4e-23
At5g60850 zinc finger protein OBP4 - like 100 3e-22
At1g64620 zinc finger protein, putative 100 5e-22
At2g28810 putative DOF zinc finger protein 100 6e-22
At2g37590 putative DOF zinc finger protein 99 8e-22
At3g50410 DNA binding protein 99 1e-21
At3g21270 Dof zinc finger protein 99 1e-21
At1g51700 unknown protein 99 1e-21
At1g07640 zinc finger protein OBP2 like 99 1e-21
At2g46590 DOF zinc finger like protein 98 2e-21
At1g28310 zinc finger like protein OBP3 98 2e-21
At5g65590 DOF zinc finger protein-like 97 3e-21
>At2g34140 putative DOF zinc finger protein
Length = 170
Score = 170 bits (430), Expect = 4e-43
Identities = 96/174 (55%), Positives = 105/174 (60%), Gaps = 21/174 (12%)
Query: 8 QDSEGIKLFGTTI-----TLHGGRETRERSED-----KKGSGEERDQEKKPDKIIPCPRC 57
QDS+GIKLFG TI T+ ET ++ + S + EK+PDKII CPRC
Sbjct: 4 QDSQGIKLFGKTIAFNTRTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRC 63
Query: 58 KSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPS----CDELLD 113
KSMETKFCYFNNYNVNQPRHFCKGC RYWTAGGALRNVPVGAGRRK +P L D
Sbjct: 64 KSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPPGRVVVGMLGD 123
Query: 114 GGGSICDASATVEQLGLGTHREWHEAAAMFHGDFRQLFPSKRPRTTAGSGGQPC 167
G G VE + EW AAA HG FR FP KR R S GQ C
Sbjct: 124 GNG-----VRQVELINGLLVEEWQHAAAAAHGSFRHDFPMKRLR--CYSDGQSC 170
>At1g29160 ascorbate oxidase promoter-binding protein, putative
Length = 175
Score = 166 bits (419), Expect = 7e-42
Identities = 96/181 (53%), Positives = 109/181 (60%), Gaps = 30/181 (16%)
Query: 8 QDSEGIKLFGTTITLHGGRETRERSEDKKGSGEERDQ--------------EKKPDKIIP 53
QDS+GIKLFG TIT + + E+++ + Q EK+PDKIIP
Sbjct: 4 QDSQGIKLFGKTITFNANITQTIKKEEQQQQQQPELQATTAVRSPSSDLTAEKRPDKIIP 63
Query: 54 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRP-----SC 108
CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK +P
Sbjct: 64 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPGRVGGF 123
Query: 109 DELLDGGGSICDASATVEQLGLGT--HREWHEAAAMFHGDFRQLFPSKRPRTTAGSGGQP 166
ELL A+ V+Q+ L EW A A HG FR FP KR R + GQ
Sbjct: 124 AELLGA------ATGAVDQVELDALLVEEWRAATAS-HGGFRHDFPVKRLR--CYTDGQS 174
Query: 167 C 167
C
Sbjct: 175 C 175
>At3g47500 H-protein promoter binding factor-2a
Length = 448
Score = 129 bits (325), Expect = 6e-31
Identities = 55/81 (67%), Positives = 65/81 (79%)
Query: 27 ETRERSEDKKGSGEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYW 86
E+ + ED + + + KKP KI+PCPRCKSMETKFCY+NNYN+NQPRHFCK CQRYW
Sbjct: 85 ESSDTPEDNQQTTPDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYW 144
Query: 87 TAGGALRNVPVGAGRRKMRPS 107
TAGG +RNVPVGAGRRK + S
Sbjct: 145 TAGGTMRNVPVGAGRRKNKSS 165
Score = 26.9 bits (58), Expect = 5.1
Identities = 17/63 (26%), Positives = 26/63 (40%), Gaps = 2/63 (3%)
Query: 13 IKLFGTTITLHGGRETRERSEDKKGSGEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNV 72
IKLFG I E+ ED + +K P+K+ P C N++N
Sbjct: 10 IKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKV--TPELSDKNNNNCNDNSFNN 67
Query: 73 NQP 75
++P
Sbjct: 68 SKP 70
>At5g62430 H-protein promoter binding factor-like protein
Length = 298
Score = 128 bits (322), Expect = 1e-30
Identities = 59/97 (60%), Positives = 68/97 (69%), Gaps = 6/97 (6%)
Query: 13 IKLFGTTITLHGGRETRERSEDKKGSGEERDQE------KKPDKIIPCPRCKSMETKFCY 66
IKLFG I E + E+K + DQ KKP KI+PCPRC SMETKFCY
Sbjct: 9 IKLFGMKIPFPTVLEVADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCY 68
Query: 67 FNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 103
+NNYNVNQPRHFCK CQRYWT+GG +R+VP+GAGRRK
Sbjct: 69 YNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRK 105
>At5g39660 unknown protein
Length = 457
Score = 127 bits (319), Expect = 3e-30
Identities = 56/79 (70%), Positives = 63/79 (78%), Gaps = 3/79 (3%)
Query: 28 TRERSEDKKGSGEERDQE---KKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQR 84
T+ +++ G QE KKPDKI+PCPRC SMETKFCY+NNYNVNQPRHFCK CQR
Sbjct: 111 TKAAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQR 170
Query: 85 YWTAGGALRNVPVGAGRRK 103
YWTAGG +RNVPVGAGRRK
Sbjct: 171 YWTAGGTMRNVPVGAGRRK 189
>At1g69570 H-protein promoter binding factor-2b, putative
Length = 399
Score = 126 bits (316), Expect = 6e-30
Identities = 57/97 (58%), Positives = 71/97 (72%), Gaps = 2/97 (2%)
Query: 38 SGEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPV 97
SGE+ KKPDK+IPCPRC+S TKFCY+NNYNVNQPR+FC+ CQRYWTAGG++RNVPV
Sbjct: 118 SGEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPV 177
Query: 98 GAGRRKMR--PSCDELLDGGGSICDASATVEQLGLGT 132
G+GRRK + PS + L CD + + L G+
Sbjct: 178 GSGRRKNKGWPSSNHYLQVTSEDCDNNNSGTILSFGS 214
>At1g26790 H-protein promoter binding factor-2b, putative
Length = 396
Score = 124 bits (312), Expect = 2e-29
Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 9/110 (8%)
Query: 1 MAQVQSGQDSEGIKLFGTTITLHGGRETRERSEDKKG------SGEERDQE-KKPDKIIP 53
M QS D+ +KL ++ + +ET E S+D+ S EE+ E KKPDKI+P
Sbjct: 79 MMNNQSVTDNTSLKL--SSNLNNESKETSENSDDQHSEITTITSEEEKTTELKKPDKILP 136
Query: 54 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 103
CPRC S +TKFCY+NNYNVNQPRHFC+ CQRYWTAGG++R VPVG+GRRK
Sbjct: 137 CPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRK 186
>At4g24060 unknown protein
Length = 342
Score = 104 bits (259), Expect = 3e-23
Identities = 45/95 (47%), Positives = 60/95 (62%)
Query: 39 GEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVG 98
G ER + D+ + CPRC S TKFCY+NNY++ QPR+FCKGC+RYWT GG+LRN+PVG
Sbjct: 40 GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99
Query: 99 AGRRKMRPSCDELLDGGGSICDASATVEQLGLGTH 133
G RK + S D + D++ + L H
Sbjct: 100 GGSRKNKRSHSSSSDISNNHSDSTQPATKKHLSDH 134
>At5g02460 putative zinc finger protein
Length = 399
Score = 103 bits (257), Expect = 4e-23
Identities = 45/94 (47%), Positives = 59/94 (61%)
Query: 48 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPS 107
P+ + CPRC S TKFCYFNNY++ QPRHFCK C+RYWT GGALR+VPVG G R+ + +
Sbjct: 91 PETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRT 150
Query: 108 CDELLDGGGSICDASATVEQLGLGTHREWHEAAA 141
+ GGGS ++ + + H A A
Sbjct: 151 KNSSGGGGGSTSSGNSKSQDSATSNDQYHHRAMA 184
>At5g60850 zinc finger protein OBP4 - like
Length = 307
Score = 100 bits (250), Expect = 3e-22
Identities = 48/101 (47%), Positives = 59/101 (57%), Gaps = 8/101 (7%)
Query: 7 GQDSEGIKLFGTTITLHGGRETRERSEDKKGSGEERDQEKKPDKIIPCPRCKSMETKFCY 66
G G + FG I GG + R R+ + + CPRC S+ TKFCY
Sbjct: 14 GGGGGGGRFFGGGIGGGGGGDRRMRAHQNNILNHHQS--------LKCPRCNSLNTKFCY 65
Query: 67 FNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPS 107
+NNYN++QPRHFCK C+RYWT GG LRNVPVG G RK + S
Sbjct: 66 YNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRS 106
>At1g64620 zinc finger protein, putative
Length = 352
Score = 100 bits (248), Expect = 5e-22
Identities = 40/67 (59%), Positives = 52/67 (76%)
Query: 41 ERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAG 100
ER + D+ + CPRC S+ TKFCY+NNY++ QPR+FCK C+RYWTAGG+LRN+PVG G
Sbjct: 38 ERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGG 97
Query: 101 RRKMRPS 107
RK + S
Sbjct: 98 VRKNKRS 104
>At2g28810 putative DOF zinc finger protein
Length = 320
Score = 99.8 bits (247), Expect = 6e-22
Identities = 40/56 (71%), Positives = 45/56 (79%)
Query: 48 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 103
P+ + CPRC S TKFCYFNNYN+ QPRHFCK C+RYWT GGALRNVPVG G R+
Sbjct: 90 PEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRR 145
>At2g37590 putative DOF zinc finger protein
Length = 330
Score = 99.4 bits (246), Expect = 8e-22
Identities = 40/58 (68%), Positives = 47/58 (80%)
Query: 48 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMR 105
P+ + CPRC+S TKFCYFNNY++ QPRHFCK C+RYWT GGALRNVPVG G R+ R
Sbjct: 85 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNR 142
>At3g50410 DNA binding protein
Length = 253
Score = 99.0 bits (245), Expect = 1e-21
Identities = 44/76 (57%), Positives = 51/76 (66%), Gaps = 10/76 (13%)
Query: 38 SGEERDQEKKPDKI----------IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWT 87
SGE R KP+ + +PCPRC S TKFCY+NNYN +QPRHFCK C+RYWT
Sbjct: 6 SGEPRRIAMKPNGVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWT 65
Query: 88 AGGALRNVPVGAGRRK 103
GG LR+VPVG G RK
Sbjct: 66 HGGTLRDVPVGGGTRK 81
>At3g21270 Dof zinc finger protein
Length = 204
Score = 98.6 bits (244), Expect = 1e-21
Identities = 41/67 (61%), Positives = 52/67 (77%), Gaps = 4/67 (5%)
Query: 41 ERDQEKKPD----KIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP 96
++ Q+++P + + CPRC S TKFCY+NNYN++QPRHFCK C+RYWT GGALRNVP
Sbjct: 14 KQQQQQQPQFAEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVP 73
Query: 97 VGAGRRK 103
VG G RK
Sbjct: 74 VGGGSRK 80
>At1g51700 unknown protein
Length = 194
Score = 98.6 bits (244), Expect = 1e-21
Identities = 39/66 (59%), Positives = 49/66 (74%)
Query: 38 SGEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPV 97
+ ++ E + + CPRC S TKFCY+NNYN++QPRHFCK C+RYWT GGALRN+PV
Sbjct: 19 TAKQNQPELPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPV 78
Query: 98 GAGRRK 103
G G RK
Sbjct: 79 GGGTRK 84
>At1g07640 zinc finger protein OBP2 like
Length = 331
Score = 98.6 bits (244), Expect = 1e-21
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 52 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 103
+ CPRC S TKFCY+NNYN+ QPRHFCKGC+RYWT GGALRNVPVG G R+
Sbjct: 77 LKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRR 128
>At2g46590 DOF zinc finger like protein
Length = 357
Score = 98.2 bits (243), Expect = 2e-21
Identities = 43/98 (43%), Positives = 61/98 (61%), Gaps = 8/98 (8%)
Query: 10 SEGIKLFGTTITLHGGRETRERSEDKKGSGEERDQEKKPDKIIPCPRCKSMETKFCYFNN 69
S G+ G T++ S + + +++ +P + + CPRC S TKFCY+NN
Sbjct: 34 SNGVSTAGATVS--------GVSNNNNNTAVVAERKARPQEKLNCPRCNSTNTKFCYYNN 85
Query: 70 YNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPS 107
Y++ QPR+FCKGC+RYWT GG+LRNVPVG RK + S
Sbjct: 86 YSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRS 123
>At1g28310 zinc finger like protein OBP3
Length = 311
Score = 97.8 bits (242), Expect = 2e-21
Identities = 38/64 (59%), Positives = 49/64 (76%)
Query: 40 EERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGA 99
+++ Q ++P + CPRC S TKFCY+NNY+++QPRHFCK C+RYWT GG LRNVPVG
Sbjct: 15 QQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGG 74
Query: 100 GRRK 103
RK
Sbjct: 75 SYRK 78
>At5g65590 DOF zinc finger protein-like
Length = 316
Score = 97.4 bits (241), Expect = 3e-21
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 7/78 (8%)
Query: 32 SEDKK--GSGEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAG 89
S+ KK S +DQ+ + CPRC S TKFCY+NNY+++QPRHFCK C+RYWT G
Sbjct: 24 SQTKKPPSSSVAQDQQN-----LKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRG 78
Query: 90 GALRNVPVGAGRRKMRPS 107
GALRNVP+G G RK + S
Sbjct: 79 GALRNVPIGGGCRKTKKS 96
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,282,817
Number of Sequences: 26719
Number of extensions: 192787
Number of successful extensions: 731
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 56
length of query: 167
length of database: 11,318,596
effective HSP length: 92
effective length of query: 75
effective length of database: 8,860,448
effective search space: 664533600
effective search space used: 664533600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0399.7