BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0388a.4
         (1489 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g10780 pseudogene                                                  812  0.0
At2g04670 putative retroelement pol polyprotein                       701  0.0
At4g16910 retrotransposon like protein                                683  0.0
At3g31970 hypothetical protein                                        640  0.0
At4g07830 putative reverse transcriptase                              511  e-144
At2g07660 putative retroelement pol polyprotein                       486  e-137
At1g36120 putative reverse transcriptase gb|AAD22339.1                474  e-133
At3g11970 hypothetical protein                                        451  e-126
At1g36590 hypothetical protein                                        446  e-125
At4g10580 putative reverse-transcriptase -like protein                398  e-110
At2g14650 putative retroelement pol polyprotein                       393  e-109
At1g35370 hypothetical protein                                        372  e-103
At2g06470 putative retroelement pol polyprotein                       329  6e-90
At4g03840 putative transposon protein                                 322  1e-87
At3g29490 hypothetical protein                                        290  6e-78
At4g03650 putative reverse transcriptase                              288  2e-77
At2g06890 putative retroelement integrase                             287  4e-77
At3g29480 hypothetical protein                                        285  1e-76
At2g05610 putative retroelement pol polyprotein                       231  3e-60
At4g07850 putative polyprotein                                        207  5e-53

>At2g10780 pseudogene
          Length = 1611

 Score =  812 bits (2097), Expect = 0.0
 Identities = 409/757 (54%), Positives = 535/757 (70%), Gaps = 13/757 (1%)

Query: 727  EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
            E  +  EL+A  SKC FW   V FLGHVIS QGV+VDP KI SI  W +P+ A++IRSF+
Sbjct: 834  ERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFL 893

Query: 787  GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
            GLAGYYRRFV  +A +  PLT+LT K+  F W+++CE+SF E+K  LT A +L LP+EGE
Sbjct: 894  GLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGE 953

Query: 847  PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLY 906
            PY VY DAS  GLGCV+MQ+  VIAYASRQL+ HEKNYPTHDLE+AA+V+ LKIWR YLY
Sbjct: 954  PYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLY 1013

Query: 907  GSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMH 966
            G+   IY+DHKSLKY+F Q +LN+RQRRWME + DY  D+  HPGK N VADALSR+   
Sbjct: 1014 GAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVADALSRRRSE 1073

Query: 967  VSSLMVKELELLEAF*DL---SLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETDEGLLEW 1023
            V +    +++L+     L   +L  ++ P  L  G     + LL  I+  QE DE +  W
Sbjct: 1074 VEAER-SQVDLVNMMGTLHVNALSKEVEP--LGLGAAD-QADLLSRIRLAQERDEEIKGW 1129

Query: 1024 RKLVTQGKAPEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDL 1083
                 Q    E+   ++  +   GRVCVPND  ++  IL E H+S+ SIHPG NKMY+DL
Sbjct: 1130 ----AQNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDL 1185

Query: 1084 KLHFWWPGMKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPL 1143
            K ++ W GMKK VA +V+ C TC   K EHQ P+G LQ+L +PEWKWD I+MDFVT LP 
Sbjct: 1186 KRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPT 1245

Query: 1144 -TRRRFDAIWVVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRF 1202
              + + +A+WVVVDRLTK+AHF+ IS     E +AE +I +IVRLHG+P SIVSDRD+RF
Sbjct: 1246 GIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRF 1305

Query: 1203 TSRFWGALQQALGTKLRLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIE 1262
            TS+FW A Q+ALGT++ LS+AY+PQTD Q+ERTIQ+LED+LRACVLD  G+W++ L L+E
Sbjct: 1306 TSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVE 1365

Query: 1263 FTYNNSFHASIGMAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRI 1322
            F YNNSF ASIGM+PYEALYGR C+TPLCW   GE  + GP +V +TTE +K ++ K++ 
Sbjct: 1366 FAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKE 1425

Query: 1323 S*SRQKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAIKSKKLTPKFIGPYQITERVGPV 1382
            +  RQKSYA+ RRKELEFQ GD V+L+     G GR    KKL+P+++GPY++ ERVG V
Sbjct: 1426 AQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAV 1485

Query: 1383 AYRIALPPFLSHIHDVLHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKR 1442
            AY++ LPP L+  H+V HVSQLRK ++D    +E     LK+++TV   P++I+DR TK 
Sbjct: 1486 AYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKG 1545

Query: 1443 LRNK*VSLVKVVWN-QATGDATWELEDKMRESHPDLF 1478
             R K   L+KV+WN +   + TWE E+KM+ + P+ F
Sbjct: 1546 TRGKARDLLKVLWNCRGREEYTWETENKMKANFPEWF 1582


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  701 bits (1809), Expect = 0.0
 Identities = 357/746 (47%), Positives = 490/746 (64%), Gaps = 40/746 (5%)

Query: 727  EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
            E  + ++L+A  SKC FW  E+ FLGH++S++GV+VDP KIE+I  W +P  A++IRSF+
Sbjct: 692  EKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFL 751

Query: 787  GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
             L GYYRRFVK +A +  P+T+LT K+ PF W+ +CEE F  +K+ LT+  +LALP+ G+
Sbjct: 752  RLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQ 811

Query: 847  PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLY 906
            PY VY DAS  GLGCV+MQ  KVIAYASRQL+ HE NYPTHDLE+A +++ALKIWR YLY
Sbjct: 812  PYMVYTDASRVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLY 871

Query: 907  GSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMH 966
            G    +++DHKSLKY+F+Q +LN+RQ RWME + DY+ ++  HPGK NVVADALSRK + 
Sbjct: 872  GGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPGKANVVADALSRKRVG 931

Query: 967  VSSLMVKELELLEAF*DLSLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETDEGLLEWRKL 1026
             +     E  L+     L L V +A   L    V   + LL   +  QE DEGL+     
Sbjct: 932  AAPGQSVE-ALVSEIGALRLCV-VAREPLGLEAVD-RADLLTRARLAQEKDEGLI----A 984

Query: 1027 VTQGKAPEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKLH 1086
             ++ +  E+   ++  +   GRVCVP D  +RR IL E H S  SIHPG  KMY+DLK +
Sbjct: 985  ASKAEGSEYQFAANGTIFVYGRVCVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRY 1044

Query: 1087 FWWPGMKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTRR 1146
            + W GMK+ VA +V+ C  C   K EHQ P                              
Sbjct: 1045 YQWVGMKRDVANWVAECDVCQLVKAEHQVP------------------------------ 1074

Query: 1147 RFDAIWVVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSRF 1206
              DAIWV++DRLTK+AHF+ I        LA+ ++++IV+LHGVP SIVSDRDS+FT  F
Sbjct: 1075 --DAIWVIMDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAF 1132

Query: 1207 WGALQQALGTKLRLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTYN 1266
            W A Q  +GTK+++S+AY+PQTDGQ+ERTIQ+LED+LR CVLD  G W + L L+EF YN
Sbjct: 1133 WRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYN 1192

Query: 1267 NSFHASIGMAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*SR 1326
            NS+ ASIGMAP+EALYGR C TPL W Q  E  + G + VQ+TTE ++ ++  M+ + +R
Sbjct: 1193 NSYQASIGMAPFEALYGRPCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQAR 1252

Query: 1327 QKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAIKSKKLTPKFIGPYQITERVGPVAYRI 1386
            Q+SYAD RR+ELEF+ GD V+L++  + G  R+I   KL+P+++GP++I ERVGPVAYR+
Sbjct: 1253 QRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPFRIVERVGPVAYRL 1312

Query: 1387 ALPPFLSHIHDVLHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKRLRNK 1446
             LP  +   H V HV  LRK +  D  VL      L+ ++T+   P+++++R  K LR K
Sbjct: 1313 ELPDVMRAFHKVFHVLMLRKCLHKDDEVLVKIPEDLQPNMTLEARPVRVLERRIKELRRK 1372

Query: 1447 *VSLVKVVWN-QATGDATWELEDKMR 1471
             + L+KV+W+     + TWE E +M+
Sbjct: 1373 KIPLIKVLWDCDGVTEETWEPEARMK 1398


>At4g16910 retrotransposon like protein
          Length = 687

 Score =  683 bits (1762), Expect = 0.0
 Identities = 347/681 (50%), Positives = 467/681 (67%), Gaps = 19/681 (2%)

Query: 802  LTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGEPYDVYCDASHNGLGC 861
            +  P+TQLT K+  F W+E+CE SF E+K  LT A +L LP+EGEPY VY DAS  GLGC
Sbjct: 1    MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60

Query: 862  VMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTIYSDHKSLKY 921
            V++Q+  VIAYASRQL+ HEKNYPT+DLE+AA+V+ALKIWR YLYG+   I++DHKSLKY
Sbjct: 61   VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120

Query: 922  LFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSR--KAMHVSSLMVKELELLE 979
            +F Q +LN+RQRRW++ + DY+ ++  HPGK N V DALSR    +      V  + ++ 
Sbjct: 121  IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLRTVVEAERNQVNLVNMMG 180

Query: 980  AF*DLSLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETDEGLLEWRKLVTQGKAPEFSIGS 1039
                 +L  ++ P  L        + LL  I+S QE DE +  W     Q    E+   +
Sbjct: 181  TLHLNALSKEVEPLGLR---AANQADLLSRIRSAQERDEEIKGW----AQNNKTEYQSSN 233

Query: 1040 DNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPGMKKQVAEY 1099
            +  +   GRVC PND  ++  IL E H+S+ SIHPG NKMY+DLK ++ W GMKK VA +
Sbjct: 234  NGTIVVNGRVCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARW 293

Query: 1100 VSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPL-TRRRFDAIWVVVDRL 1158
            V        AK EHQ P+G LQ+L +PEWKWD I MDFVT LP   + + +A+WVVVDRL
Sbjct: 294  V--------AKEEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRL 345

Query: 1159 TKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSRFWGALQQALGTKL 1218
            TK+AHF+ IS     E +AE +I +IVRLHG+P SIVSDRD+RFTS+FW   Q+ LGT++
Sbjct: 346  TKSAHFMAISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRV 405

Query: 1219 RLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTYNNSFHASIGMAPY 1278
             LS+AY+PQTDGQ+ERTIQ+LED+LRACVLD  G+W++ L L+EF YNNSF ASIGM+PY
Sbjct: 406  NLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPY 465

Query: 1279 EALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*SRQKSYADNRRKEL 1338
            EALYGR  +TPLCW   GE  + GP +V +TT+++K ++ K++ +  RQKSYA+ RRKEL
Sbjct: 466  EALYGRAGRTPLCWTPVGERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKRRKEL 525

Query: 1339 EFQAGDHVFLRVTPMTGVGRAIKSKKLTPKFIGPYQITERVGPVAYRIALPPFLSHIHDV 1398
            EFQ GD V+L+     G GR    KKL P+++GPY++ ERVG VAY++ LPP L   H+V
Sbjct: 526  EFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNV 585

Query: 1399 LHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKRLRNK*VSLVKVVWN-Q 1457
             HVSQLRK +++    +E     LK+++TV   P++I+D+  K  R K + L+K++WN  
Sbjct: 586  FHVSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCG 645

Query: 1458 ATGDATWELEDKMRESHPDLF 1478
               + TWE E KM+ + P+ F
Sbjct: 646  GREEYTWETETKMKANFPEWF 666


>At3g31970 hypothetical protein
          Length = 1329

 Score =  640 bits (1652), Expect = 0.0
 Identities = 336/723 (46%), Positives = 455/723 (62%), Gaps = 60/723 (8%)

Query: 759  GVAVDPSKIESIMSWEQPKIASDIRSFVGLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAW 818
            GV+VD  KIE+I  W +P  A++IRSF+GLAGYY+RFVK +A +  P+T+LT K+ PF W
Sbjct: 658  GVSVDLEKIEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTKLTGKDVPFVW 717

Query: 819  TEKCEESFQEMKKRLTTALILALPKEGEPYDVYCDASHNGLGCVMMQEKKVIAYASRQLK 878
            + +C+E F  +K+ LT+  +LALP+ GEPY VY DAS  GL CV+MQ  KV         
Sbjct: 718  SPECDEGFMSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQRGKV--------- 768

Query: 879  IHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEF 938
                                              ++DHKSLKY+F Q +LN+RQRRWME 
Sbjct: 769  ----------------------------------FTDHKSLKYIFTQPELNLRQRRWMEL 794

Query: 939  LQDYEFDLQ*HPGKTNVVADALSRKAMHVS-SLMVKELELLEAF*DLSLDVKIAPGKLSF 997
            + DY+ ++  H GK NVVADALSRK +  S   +V E+  L               +   
Sbjct: 795  VADYDLEIAYHSGKANVVADALSRKRVGGSVEALVSEIGALRL---------CVMAQEPL 845

Query: 998  GMVTVS-SGLLDEIKSKQETDEGLLEWRKLVTQGKAPEFSIGSDNILRCKGRVCVPNDAT 1056
            G+  V  + LL  ++  QE DEGL+      ++    E+   ++  +   GRVCVP D  
Sbjct: 846  GLEAVDRADLLTRVRLAQEKDEGLIA----ASKADGSEYQFAANGTILVHGRVCVPKDEE 901

Query: 1057 MRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPGMKKQVAEYVSTCLTC*NAKVEHQKP 1116
            +RR IL E H S  SIHP   KMY+DLK ++ W GMK+ VA +V+ C  C   K EHQ P
Sbjct: 902  LRREILSEAHASMFSIHPRATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAEHQVP 961

Query: 1117 AGKLQSLDVPEWKWDSISMDFVTALPLTRRRFDAIWVVVDRLTKTAHFVPISLNYKVEKL 1176
             G LQSL + EWKWD I+MDFV  LP++R + DAIWV+VDRLTK+AHF+ I        L
Sbjct: 962  GGLLQSLPILEWKWDFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAVLL 1020

Query: 1177 AEIHIAKIVRLHGVPSSIVSDRDSRFTSRFWGALQQALGTKLRLSSAYNPQTDGQTERTI 1236
            A+ ++++IV LHGVP SIVSDRDS+FTS FW A Q  +GTK+++S+AY+PQTDGQ+ERTI
Sbjct: 1021 AKKYVSEIVELHGVPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTI 1080

Query: 1237 QSLEDLLRACVLDHKGSWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCQTPLCWHQDG 1296
            Q+LED+LR CVLD  G W + L L+EF YNNS+ ASI MAP+EALYGR C+TPLCW Q G
Sbjct: 1081 QTLEDMLRMCVLDRGGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVG 1140

Query: 1297 EHLVIGPELVQQTTEEVKRIQEKMRIS*SRQKSYADNRRKELEFQAGDHVFLRVTPMTGV 1356
            E  + G + V +TTE ++ ++  M+ +  RQ+SYAD RR+ELEF+ GD V+L++  + G 
Sbjct: 1141 ERSIYGADYVLETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGP 1200

Query: 1357 GRAIKSKKLTPKFIGPYQITERVGPVAYRIALPPFLSHIHDVLHVSQLRKYMADDSHVLE 1416
             R+I   KLTP+++GP++I ERVGPVAYR+ LP  +   H V HVS LRK +  D  VL 
Sbjct: 1201 NRSISETKLTPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEVLA 1260

Query: 1417 PDDIQLKDDLTVVMPPIKIVDRSTKRLRNK*VSLVKVVWN-QATGDATWELEDKMRESHP 1475
                 L+ ++T+   P++I++R  K LR K + L+KV+WN     + TWE E +M+ S  
Sbjct: 1261 KILEDLQPNMTLEARPVRILERRIKELRRKKIPLIKVLWNCDGVTEETWEPEARMKASFK 1320

Query: 1476 DLF 1478
              F
Sbjct: 1321 KWF 1323


>At4g07830 putative reverse transcriptase
          Length = 611

 Score =  511 bits (1316), Expect = e-144
 Identities = 277/610 (45%), Positives = 381/610 (62%), Gaps = 50/610 (8%)

Query: 864  MQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTIYSDHKSLKYLF 923
            MQ  KVIAY SRQLK HE NYPTHDLE+AA+                  ++DHKSLKY+F
Sbjct: 1    MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAV------------------FTDHKSLKYIF 42

Query: 924  DQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMHVSSLMVKELELLEAF*D 983
             Q +LN+R RRWM+ + DY+ ++  HPGK NVV DALSRK +  +     E  ++E    
Sbjct: 43   TQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSVETLVIE---- 98

Query: 984  LSLDVKIAPGKLSFGMVTVS-SGLLDEIKSKQETDEGLLEWRKLVTQGKAPEFSIGSDNI 1042
            +      A  +   G+  V  + LL  ++  QE DEGL+      ++ +  E+   ++  
Sbjct: 99   IGALRLCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIA----ASKAEGFEYQFAANGT 154

Query: 1043 LRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPGMKKQVAEYVST 1102
            +   GRVCVP D  +R+ IL E H S  SIHPG  KMY+DLK ++ W GMK+ V  +V  
Sbjct: 155  ILVHGRVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEE 214

Query: 1103 CLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTRRRFDAIWVVVDRLTKTA 1162
            C  C   K+EHQ     LQSL +PEWKWD I+MDFV  LP++R + DAIWV+VDRLTK+A
Sbjct: 215  CDVCQLVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTK-DAIWVIVDRLTKSA 273

Query: 1163 HFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSRFWGALQQALGTKLRLSS 1222
            HF+ I        LA+ ++++IV+LHGVP SIVSDRDS+FTS FW A Q  +GTK+++S+
Sbjct: 274  HFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMST 333

Query: 1223 AYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTYNNSFHASIGMAPYEALY 1282
            AY+PQTDGQ+ERTIQ+LED+LR CVLD +G W + L L+EF YNNS+ ASIGMAP+E LY
Sbjct: 334  AYHPQTDGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLY 393

Query: 1283 GRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*SRQKSYADNRRKELEFQA 1342
            GR C+T LCW Q GE  + G + VQ+ TE ++ ++  M+ + +RQ+SYAD RRKELEF+ 
Sbjct: 394  GRPCRT-LCWTQVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRSYADKRRKELEFEV 452

Query: 1343 GDHVFLRVTPMTGVGRAIKSKKLTPKFIGPYQITERVGPVAYRIALPPFLSHIHDVLHVS 1402
            GD V       +  G   +S+             +RVGPVA+R+ L   +   H V HVS
Sbjct: 453  GDSV-------SQDGHVARSE-------------QRVGPVAFRLELSDVMRAFHKVFHVS 492

Query: 1403 QLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKRLRNK*VSLVKVVWN-QATGD 1461
             LRK +  D  VL      L+ ++T+   P+++++R  K LR K + L+KV+ N     +
Sbjct: 493  MLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLRNCDGVTE 552

Query: 1462 ATWELEDKMR 1471
             TWE E +++
Sbjct: 553  ETWEPEARLK 562


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  486 bits (1250), Expect = e-137
 Identities = 240/446 (53%), Positives = 320/446 (70%), Gaps = 5/446 (1%)

Query: 1010 IKSKQETDEGLLEWRKLVTQGKAPEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSR 1069
            I+  QE DE +  W    T     E+   ++  +   GRVCVPND  ++  IL E H+S+
Sbjct: 508  IRLAQERDEEIKGW----TLNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSK 563

Query: 1070 LSIHPGMNKMYQDLKLHFWWPGMKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWK 1129
             SIHPG NKMY+DLK ++ W GM+K VA +V+ C TC   K EHQ P+G LQ+L + EWK
Sbjct: 564  FSIHPGSNKMYRDLKRYYHWVGMRKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWK 623

Query: 1130 WDSISMDFVTALPL-TRRRFDAIWVVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLH 1188
            WD I+MDFVT LP   + + +A+WVVVDRLTK+AHF+ IS     E +AE +I +I+RLH
Sbjct: 624  WDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIMRLH 683

Query: 1189 GVPSSIVSDRDSRFTSRFWGALQQALGTKLRLSSAYNPQTDGQTERTIQSLEDLLRACVL 1248
            G+P SIVSDRD+RFTS+FW A Q+ALGT++ LS+AY+PQTDGQ+ERTIQ+LED+LRACVL
Sbjct: 684  GIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVL 743

Query: 1249 DHKGSWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQ 1308
            D  G+W++ L LIEF YNNSF ASIGM+PYEALYGR C+TPLCW   GE  + GP +V +
Sbjct: 744  DWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDE 803

Query: 1309 TTEEVKRIQEKMRIS*SRQKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAIKSKKLTPK 1368
            TTE +K ++ K++ +  RQKSYA+ RRKELEFQ GD V+L+     G GR    KKL+P+
Sbjct: 804  TTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPR 863

Query: 1369 FIGPYQITERVGPVAYRIALPPFLSHIHDVLHVSQLRKYMADDSHVLEPDDIQLKDDLTV 1428
            ++GPY++ ERVG VAY++ LPP L+  H+V HVSQLRKY++D    +E     LK+++TV
Sbjct: 864  YVGPYKVIERVGAVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESVEDIPPGLKENMTV 923

Query: 1429 VMPPIKIVDRSTKRLRNK*VSLVKVV 1454
               P++I+DR +K  R K   L+KV+
Sbjct: 924  EAWPVRIMDRMSKGTRGKSRDLLKVL 949



 Score =  231 bits (589), Expect = 2e-60
 Identities = 111/179 (62%), Positives = 136/179 (75%)

Query: 727 EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
           E  +  EL+A  SK  FW   V FLGHVIS QGV+VDP KI SI  W +P+ A++IRSF+
Sbjct: 329 ERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFL 388

Query: 787 GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
           GLAGYYRRFV  +A +  PLT+LT K+  F W+++CE+SF E+K  L  A +L LP+EGE
Sbjct: 389 GLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGE 448

Query: 847 PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYL 905
           PY VY DAS  GLGCV+MQ+  VIAYASRQL+ HEKNYPTHDLE+AA+V+ALKIWR YL
Sbjct: 449 PYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYL 507


>At1g36120 putative reverse transcriptase gb|AAD22339.1
          Length = 1235

 Score =  474 bits (1219), Expect = e-133
 Identities = 269/676 (39%), Positives = 371/676 (54%), Gaps = 145/676 (21%)

Query: 797  KDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGEPYDVYCDASH 856
            K +A +  P+T+LT+K+ PF W+ +CEE F+                             
Sbjct: 691  KGFASMAQPMTKLTEKDIPFVWSPECEEGFRG---------------------------- 722

Query: 857  NGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTIYSDH 916
                       KVI YASRQL+ HE NYPTHDLE+AAI++ALKIW  YLYG    +++DH
Sbjct: 723  -----------KVIVYASRQLRKHEGNYPTHDLEMAAIIFALKIWGSYLYGGKVQVFTDH 771

Query: 917  KSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMHVSSLMVKELE 976
            KSLK +F Q +LN+RQRRWME + DY+ ++  HPGKTNVVADALSRK             
Sbjct: 772  KSLKDIFTQPELNLRQRRWMELVADYDLEIAYHPGKTNVVADALSRKR------------ 819

Query: 977  LLEAF*DLSLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETDEGLLEWRKLVTQGKAPEFS 1036
                       V  APG+    +V+    L   + +++          KL    +A    
Sbjct: 820  -----------VGAAPGQSVEALVSEIGALRLCVVAREPL--------KLEAVDRA---- 856

Query: 1037 IGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPGMKKQV 1096
              ++  +    RVC+P D  +RR IL E H S  SIHPG  KMY+DLK H+ W GMK+ V
Sbjct: 857  --ANGTILVHERVCLPKDEELRREILSEAHASMFSIHPGATKMYRDLKRHYQWVGMKRDV 914

Query: 1097 AEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTRRRFDAIWVVVD 1156
            A +V+ C  C   K EHQ P G LQSL + EWK      D    LP              
Sbjct: 915  ANWVTECDVCQLVKAEHQVPGGLLQSLPISEWK----KTDGAAVLP-------------- 956

Query: 1157 RLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSRFWGALQQALGT 1216
                                 + ++++IV+LHGVP SI+S RDS+FTS FW A Q  +GT
Sbjct: 957  ---------------------KKYVSEIVKLHGVPVSILSHRDSKFTSAFWRAFQVEMGT 995

Query: 1217 KLRLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTYNNSFHASIGMA 1276
            K+++S+AY+PQTDGQ+ERTIQ+LED+L+ CVLD  G W + L L++F YNNS+ ASIGMA
Sbjct: 996  KVQMSTAYHPQTDGQSERTIQTLEDMLQMCVLDWGGHWADHLSLVKFAYNNSYQASIGMA 1055

Query: 1277 PYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*SRQKSYADNRRK 1336
            P+EALYGR C+T LCW Q GE  + G + VQ+TTE ++ ++  M+ +  RQ+SYAD RR+
Sbjct: 1056 PFEALYGRPCRTLLCWTQVGEKSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKRRR 1115

Query: 1337 ELEFQAGDHVFLRVTPMTGVGRAIKSKKLTPKFIGPYQITERVGPVAYRIALPPFLSHIH 1396
            ELEF+ G                              +I ERVGPVAYR+ LP  +   H
Sbjct: 1116 ELEFEVGT-----------------------------EIVERVGPVAYRLELPDVMRAFH 1146

Query: 1397 DVLHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKRLRNK*VSLVKVVWN 1456
            +V HVS LRK +  D  VL      L+ ++T+   P+++++R  K +R K + ++KV+W+
Sbjct: 1147 NVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKEVRRKKIPMIKVLWD 1206

Query: 1457 -QATGDATWELEDKMR 1471
                 + TWE E +++
Sbjct: 1207 CDGVTEETWEPEARIK 1222


>At3g11970 hypothetical protein
          Length = 1499

 Score =  451 bits (1159), Expect = e-126
 Identities = 265/753 (35%), Positives = 419/753 (55%), Gaps = 35/753 (4%)

Query: 727  EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
            E  +  +L+A  SKC F + +V++LGH IS+QG+  DP+KI+++  W QP     +R F+
Sbjct: 776  EVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFL 835

Query: 787  GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
            GLAGYYRRFV+ +  +  PL  LTK +  F WT   +++F+++K  L  A +L+LP   +
Sbjct: 836  GLAGYYRRFVRSFGVIAGPLHALTKTDA-FEWTAVAQQAFEDLKAALCQAPVLSLPLFDK 894

Query: 847  PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLY 906
             + V  DA   G+G V+MQE   +AY SRQLK  + +   ++ EL A+++A++ WRHYL 
Sbjct: 895  QFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLL 954

Query: 907  GSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMH 966
             S F I +D +SLKYL +Q+     Q++W+  L ++++++Q   GK NVVADALSR    
Sbjct: 955  QSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSR---- 1010

Query: 967  VSSLMVKELELLEAF*DLSLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETDEGLLE-WRK 1025
                 V+  E+L                    M  V   LL +I++    D  L +    
Sbjct: 1011 -----VEGSEVLH-----------------MAMTVVECDLLKDIQAGYANDSQLQDIITA 1048

Query: 1026 LVTQGKAPEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKL 1085
            L     + ++   S NILR K ++ VP +  ++  IL   H S +  H G +  +Q +K 
Sbjct: 1049 LQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKG 1108

Query: 1086 HFWWPGMKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTR 1145
             F+W GM K +  Y+ +C TC   K +     G LQ L +P+  W  +SMDF+  LP++ 
Sbjct: 1109 LFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSG 1168

Query: 1146 RRFDAIWVVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSR 1205
             +   I VVVDRL+K AHF+ +S  Y    +A  ++  + +LHG P+SIVSDRD  FTS 
Sbjct: 1169 GK-TVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSE 1227

Query: 1206 FWGALQQALGTKLRLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTY 1265
            FW       G  L+L+SAY+PQ+DGQTE   + LE  LR    D    W + L L E+ Y
Sbjct: 1228 FWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWY 1287

Query: 1266 NNSFHASIGMAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*S 1325
            N ++H+S  M P+E +YG+     L +      + +    +Q+  + +  ++  +  +  
Sbjct: 1288 NTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQH 1347

Query: 1326 RQKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAIK-SKKLTPKFIGPYQITERVGPVAY 1384
            R K +AD  R E EF+ GD+V++++ P       ++ ++KL+PK+ GPY+I +R G VAY
Sbjct: 1348 RMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAY 1407

Query: 1385 RIALPPFLSHIHDVLHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKRLR 1444
            ++ALP + S +H V HVSQL+  + + S  +    + ++D    V  P K+V+R     +
Sbjct: 1408 KLALPSY-SQVHPVFHVSQLKVLVGNVSTTVHLPSV-MQDVFEKV--PEKVVERKMVNRQ 1463

Query: 1445 NK*VSLVKVVW-NQATGDATWELEDKMRESHPD 1476
             K V+ V V W N+   +ATWE    ++++ P+
Sbjct: 1464 GKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPE 1496


>At1g36590 hypothetical protein
          Length = 1499

 Score =  446 bits (1147), Expect = e-125
 Identities = 264/753 (35%), Positives = 419/753 (55%), Gaps = 35/753 (4%)

Query: 727  EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
            E  +  +L+A  SKC F + +V++LGH IS+QG+  DP+KI+++  W QP     +R F+
Sbjct: 776  EVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFL 835

Query: 787  GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
            GLAGYYRRFV+ +  +  PL  LTK +  F WT   +++F+++K  L  A +L+LP   +
Sbjct: 836  GLAGYYRRFVRSFGVIAGPLHALTKTDA-FEWTAVAQQAFEDLKAALCQAPVLSLPLFDK 894

Query: 847  PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLY 906
             + V  DA   G+G V+MQE   +AY SRQLK  + +   ++ EL A+++A++ WRHYL 
Sbjct: 895  QFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLL 954

Query: 907  GSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMH 966
             S F I +D +SLKYL +Q+     Q++W+  L ++++++Q   GK NVVADALSR    
Sbjct: 955  QSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSR---- 1010

Query: 967  VSSLMVKELELLEAF*DLSLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETDEGLLE-WRK 1025
                 V+  E+L                    M  V   LL +I++    D  L +    
Sbjct: 1011 -----VEGSEVLH-----------------MAMTVVECDLLKDIQAGYANDSQLQDIITA 1048

Query: 1026 LVTQGKAPEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKL 1085
            L     + ++   S NILR K ++ VP +  ++  IL   H S +  H G +  +Q +K 
Sbjct: 1049 LQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKG 1108

Query: 1086 HFWWPGMKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTR 1145
             F+  GM K +  Y+ +C TC   K +     G LQ L +P+  W  +SMDF+  LP++ 
Sbjct: 1109 LFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSG 1168

Query: 1146 RRFDAIWVVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSR 1205
             +   I VVVDRL+K AHF+ +S  Y    +A+ ++  + +LHG P+SIVSDRD  FTS 
Sbjct: 1169 GK-TVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVVFTSE 1227

Query: 1206 FWGALQQALGTKLRLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTY 1265
            FW       G  L+L+SAY+PQ+DGQTE   + LE  LR    D    W + L L E+ Y
Sbjct: 1228 FWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWY 1287

Query: 1266 NNSFHASIGMAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*S 1325
            N ++H+S  M P+E +YG+     L +      + +    +Q+  + +  ++  +  +  
Sbjct: 1288 NTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQH 1347

Query: 1326 RQKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAIK-SKKLTPKFIGPYQITERVGPVAY 1384
            R K +AD  R E EF+ GD+V++++ P       ++ ++KL+PK+ GPY+I +R G VAY
Sbjct: 1348 RMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAY 1407

Query: 1385 RIALPPFLSHIHDVLHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKRLR 1444
            ++ALP + S +H V HVSQL+  + + S  +    + ++D    V  P K+V+R     +
Sbjct: 1408 KLALPSY-SQVHPVFHVSQLKVLVGNVSTTVHLPSV-MQDVFEKV--PEKVVERKMVNRQ 1463

Query: 1445 NK*VSLVKVVW-NQATGDATWELEDKMRESHPD 1476
             K V+ V V W N+   +ATWE    ++++ P+
Sbjct: 1464 GKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPE 1496


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  398 bits (1023), Expect = e-110
 Identities = 215/500 (43%), Positives = 300/500 (60%), Gaps = 62/500 (12%)

Query: 727  EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
            E  + ++L+A  SKC FW  E+ FLGH++S++GV+VDP KIE+I  W +P  A++IRSF+
Sbjct: 666  EKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFL 725

Query: 787  GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
            G AGYYRRFVK +A +  P+T+LT K+ PF W+++CEE F  +K+ LT+  +LALP+ G+
Sbjct: 726  GWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQ 785

Query: 847  PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLY 906
            PY VY DAS  GLGCV+MQ  KVIAYASRQL  HE NYPTHDLE+AA+++ALKIWR YLY
Sbjct: 786  PYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLY 845

Query: 907  GSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMH 966
            G    +++DHKSLKY+F Q +LN+RQRRWME + DY+ ++  HPGK NVV DALSRK   
Sbjct: 846  GGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVVVDALSRK--R 903

Query: 967  VSSLMVKELELLEAF*DLSLDVKIAPGKLSFGMVTVS-SGLLDEIKSKQETDEGLLEWRK 1025
            V + + + +E+L +  ++      A  +   G+  V  + LL  ++  Q+ DEGL     
Sbjct: 904  VGAALGQSVEVLVS--EIGALRLCAVAREPLGLEAVDRADLLTRVRLAQKKDEGL----- 956

Query: 1026 LVTQGKAPEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKL 1085
                                                          ++  + + YQ    
Sbjct: 957  ------------------------------------------RATKMYRDLKRYYQ---- 970

Query: 1086 HFWWPGMKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTR 1145
               W GMK  VA +V+ C  C   K EHQ   G LQSL +PEWKWD I+MD V  L ++R
Sbjct: 971  ---WVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGLRVSR 1027

Query: 1146 RRFDAIWVVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSI--VSDRDSRFT 1203
             + DAIWV+VDRLTK+AHF+ I        LA+  +++IV+LHGVP ++    DR   + 
Sbjct: 1028 TK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEAQDRQRSYA 1086

Query: 1204 SRFWGALQQALGTKLRLSSA 1223
             +    L+  +G ++ L  A
Sbjct: 1087 DKRRRELEFEVGDRVYLKMA 1106



 Score =  131 bits (329), Expect = 3e-30
 Identities = 63/153 (41%), Positives = 98/153 (63%), Gaps = 1/153 (0%)

Query: 1320 MRIS*SRQKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAIKSKKLTPKFIGPYQITERV 1379
            M+ +  RQ+SYAD RR+ELEF+ GD V+L++  + G  R+I   KL+P+++GP++I ERV
Sbjct: 1075 MKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERV 1134

Query: 1380 GPVAYRIALPPFLSHIHDVLHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRS 1439
             PVAYR+ LP  +   H V HVS LRK +  D   L      L+ ++T+   P+++++R 
Sbjct: 1135 EPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPEDLQPNMTLEARPVRVLERR 1194

Query: 1440 TKRLRNK*VSLVKVVWN-QATGDATWELEDKMR 1471
             K LR K + L+KV+W+     + TWE E +M+
Sbjct: 1195 IKELRQKKIPLIKVLWDCDGVTEETWEPEARMK 1227


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  393 bits (1010), Expect = e-109
 Identities = 193/379 (50%), Positives = 267/379 (69%), Gaps = 2/379 (0%)

Query: 1094 KQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTRRRFDAIWV 1153
            + VA +V+ C  C   K EHQ P G LQSL +PEWKWD I++DFV  LP++R + DAIWV
Sbjct: 941  EDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTK-DAIWV 999

Query: 1154 VVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSRFWGALQQA 1213
            +VDRLTK+AHF+ I        LA+ ++++IV+LHGVP SIVSDRDS+FTS FW A Q  
Sbjct: 1000 IVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAE 1059

Query: 1214 LGTKLRLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTYNNSFHASI 1273
            +GTK+++S+AY+PQT GQ+ERTIQ+LED+LR CVLD  G W + L L+EF YNNS+ ASI
Sbjct: 1060 MGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASI 1119

Query: 1274 GMAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*SRQKSYADN 1333
            GMAP+EALY R C+TPLC  Q GE  + G + VQ+TTE ++ ++  M+ +  RQ+SYAD 
Sbjct: 1120 GMAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADK 1179

Query: 1334 RRKELEFQAGDHVFLRVTPMTGVGRAIKSKKLTPKFIGPYQITERVGPVAYRIALPPFLS 1393
            RR+ELEF+ GD V+L++  + G  R+I   KL+P+++GP++I ERVGPVAYR+ LP  + 
Sbjct: 1180 RRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMR 1239

Query: 1394 HIHDVLHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKRLRNK*VSLVKV 1453
              H V HVS LRK +  D  VL      L+ ++T+   P+++++R  K LR K + L+KV
Sbjct: 1240 AFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKV 1299

Query: 1454 VWN-QATGDATWELEDKMR 1471
            +W+       TWE E +M+
Sbjct: 1300 LWDCDGVTKETWEPEARMK 1318



 Score =  316 bits (809), Expect = 7e-86
 Identities = 155/296 (52%), Positives = 210/296 (70%), Gaps = 5/296 (1%)

Query: 727  EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
            E  + ++L+A  SKC FW  E+ FLGH++S++GV+VDP KIE+I  W  P  A++IRSF+
Sbjct: 641  EKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSFL 700

Query: 787  GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
            GLAGYYRRFVK +A +  P+T+LT K+ PF W+ +CEE F  +K+ LT+  +LALP+ GE
Sbjct: 701  GLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGE 760

Query: 847  PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLY 906
            PY VY DAS  GLGCV+MQ  KVIAYASRQL+ HE NYPTHDLE+AA+++ALKIWR YLY
Sbjct: 761  PYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLY 820

Query: 907  GSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMH 966
            G    +++DHKSLKY+F Q +LN+RQR+WME + DY+ ++  HPGK NVVADALS K   
Sbjct: 821  GGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANVVADALSHK--R 878

Query: 967  VSSLMVKELELLEAF*DLSLDVKIAPGKLSFGMVTVS-SGLLDEIKSKQETDEGLL 1021
            V +   + +E L +  ++      A  +   G+  V  + LL  ++  QE DEGL+
Sbjct: 879  VGAAPGQSVEALVS--EIGALRLCAVAREPLGLEAVDRADLLTRVRLAQEKDEGLI 932


>At1g35370 hypothetical protein
          Length = 1447

 Score =  372 bits (956), Expect = e-103
 Identities = 222/651 (34%), Positives = 355/651 (54%), Gaps = 36/651 (5%)

Query: 733  ELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFVGLAGYY 792
            +L+A GSK        + LGH IS++ +  DP+KI+++  W  P     +R F+G AGYY
Sbjct: 761  KLFAKGSK--------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYY 812

Query: 793  RRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGEPYDVYC 852
            RRFV+++  +  PL  LTK +  F W+ + + +F  +K  L  A +LALP   + + V  
Sbjct: 813  RRFVRNFGVIAGPLHALTKTDG-FCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVET 871

Query: 853  DASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTI 912
            DA   G+  V+MQ+   +AY SRQLK  + +   ++ EL A ++A++ WRHYL  S F I
Sbjct: 872  DACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFII 931

Query: 913  YSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMHVSSLMV 972
             +D +SLKYL +Q+     Q++W+  L ++++++Q   GK N+VADALSR  +  S ++ 
Sbjct: 932  KTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSR--VEGSEVLH 989

Query: 973  KELELLEAF*DLSLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETDEGLLEWRKLVTQGKA 1032
              L ++E   D   ++++A           S G+L +I S             L     A
Sbjct: 990  MALSIVEC--DFLKEIQVA---------YESDGVLKDIISA------------LQQHPDA 1026

Query: 1033 PEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPGM 1092
             +    S +ILR K ++ VPND  +   +L   H S +    G +  +Q +K  F+W GM
Sbjct: 1027 KKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGM 1086

Query: 1093 KKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTRRRFDAIW 1152
             K +  ++ +C TC   K ++    G LQ L +P+  W  +SMDF+  LP +  +   I 
Sbjct: 1087 VKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLPNSGGK-SVIM 1145

Query: 1153 VVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSRFWGALQQ 1212
            VVVDRL+K AHFV ++  Y    +A+  +  + + HG P+SIVSDRD  FTS FW    +
Sbjct: 1146 VVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFK 1205

Query: 1213 ALGTKLRLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTYNNSFHAS 1272
              G +LR+SSAY+PQ+DGQTE   + LE+ LR         W++ LPL E+ YN ++H+S
Sbjct: 1206 LQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSS 1265

Query: 1273 IGMAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*SRQKSYAD 1332
              M P+E +YG+     L +      + +    +Q+    +  ++  +  +  R K +AD
Sbjct: 1266 SQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRAQHRMKQFAD 1325

Query: 1333 NRRKELEFQAGDHVFLRVTPMTGVGRAIK-SKKLTPKFIGPYQITERVGPV 1382
              R E  F  GD V++++ P       ++ ++KL+PK+ GPY+I E+ G V
Sbjct: 1326 QHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGEV 1376


>At2g06470 putative retroelement pol polyprotein
          Length = 899

 Score =  329 bits (844), Expect = 6e-90
 Identities = 167/321 (52%), Positives = 215/321 (66%), Gaps = 7/321 (2%)

Query: 818  WTEKCEESFQEMKKRLTTALILALPKEGEPYDVYCDASHNGLGCVMMQEKKVIAYASRQL 877
            W   CE+SF E+K  LT A +L LP+EGEPY VY DAS  GLGCV+MQ+  VIAYASRQL
Sbjct: 375  WQRSCEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQL 434

Query: 878  KIHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTIYSDHKSLKYLFDQKDLNMRQRRWME 937
              HEKNYPTHDLE+AA+V+ALKIWR YLYG+   IY+DHKSLKY+F Q +LN+RQRRWME
Sbjct: 435  WKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKSLKYIFIQPELNLRQRRWME 494

Query: 938  FLQDYEFDLQ*HPGKTNVVADALSRKAMHVSSLMVKELELLEAF*DLSLDVKIAPGKLSF 997
             + DY+ D+  HPGK N VADALSR+   V +    +++L+     L ++  ++    S 
Sbjct: 495  LVADYDLDIAYHPGKANQVADALSRRRSEVEAER-SQVDLVNMMGTLHVNA-LSKEVESL 552

Query: 998  GM-VTVSSGLLDEIKSKQETDEGLLEWRKLVTQGKAPEFSIGSDNILRCKGRVCVPNDAT 1056
            G+     + LL  I+  QE DE +  W          E+   ++  +   GRVCVPND  
Sbjct: 553  GLGAADQADLLSRIRLAQERDEEIKGW----ALNNKTEYQTSNNGTIVVNGRVCVPNDRA 608

Query: 1057 MRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPGMKKQVAEYVSTCLTC*NAKVEHQKP 1116
            ++  IL E H+S+ SIHPG NKMY+DLK ++ W GMKK VA +V+ C TC   K EHQ P
Sbjct: 609  LKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVP 668

Query: 1117 AGKLQSLDVPEWKWDSISMDF 1137
            +G LQ+L +PEWKWD I+MDF
Sbjct: 669  SGLLQNLPIPEWKWDHITMDF 689



 Score =  225 bits (573), Expect = 2e-58
 Identities = 119/256 (46%), Positives = 166/256 (64%), Gaps = 27/256 (10%)

Query: 1188 HGVPSSIVSD------RDSRFTSRFWGALQQALGTKLRLSSAYNPQTDGQTERTIQSLED 1241
            H VPS ++ +      +    T  F  A Q+ALGT++ LS+AY+PQTDGQ+ERTIQ+LED
Sbjct: 665  HQVPSGLLQNLPIPEWKWDHITMDF--AFQKALGTRVNLSTAYHPQTDGQSERTIQTLED 722

Query: 1242 LLRACVLDHKGSWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCQTPLCWHQDGEHLVI 1301
            +LRACVLD  G+W++ L L                   ALYGR C+TPLCW   GE  + 
Sbjct: 723  MLRACVLDWGGNWEKYLTL-------------------ALYGRACRTPLCWTPVGERRLF 763

Query: 1302 GPELVQQTTEEVKRIQEKMRIS*SRQKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAIK 1361
            GP +V +TTE +K ++ K++ +  RQKSYA+ RRKELEFQ GD V+L+     G GR   
Sbjct: 764  GPTIVDETTERMKFLKIKLKEAHDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTS 823

Query: 1362 SKKLTPKFIGPYQITERVGPVAYRIALPPFLSHIHDVLHVSQLRKYMADDSHVLEPDDIQ 1421
             KKL+P+++GPY++ ERVG VAY++ LPP L+  H+V HVSQLRK ++D    +E     
Sbjct: 824  RKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDVPPG 883

Query: 1422 LKDDLTVVMPPIKIVD 1437
            LK+++TV   P++I+D
Sbjct: 884  LKENMTVEAWPVRIMD 899


>At4g03840 putative transposon protein
          Length = 973

 Score =  322 bits (825), Expect = 1e-87
 Identities = 163/322 (50%), Positives = 212/322 (65%), Gaps = 9/322 (2%)

Query: 818  WTEKCEESFQEMKKRLTTALILALPKEGEPYDVYCDASHNGLGCVMMQEKKVIAYASRQL 877
            W   CE++F E+K  LT A +L LP+EGEPY VY DAS  GL CV+MQ+  VIAYASRQL
Sbjct: 375  WQRSCEKNFLELKAMLTNAPVLVLPEEGEPYTVYTDASVVGLECVLMQKGSVIAYASRQL 434

Query: 878  KIHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTIYSDHKSLKYLFDQKDLNMRQRRWME 937
            + HEKNYPTHDLE+AA+V+ALKIWR YLYG+   IY+DHKSLKY+F Q +LN+RQRRWME
Sbjct: 435  RKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWME 494

Query: 938  FLQDYEFDLQ*HPGKTNVVADALSRKAMHVSS--LMVKELELLEAF*DLSLDVKIAPGKL 995
             + DY+ D+  H GK N VADALSR+   V +    V  + ++      +L  ++ P  L
Sbjct: 495  LVADYDLDIAYHAGKANQVADALSRRRSEVEAERSQVDLVNMMGTLHVNALSKEVEP--L 552

Query: 996  SFGMVTVSSGLLDEIKSKQETDEGLLEWRKLVTQGKAPEFSIGSDNILRCKGRVCVPNDA 1055
              G     + LL  I+  QE DE +  W          E+   ++  +   GRVCVPN+ 
Sbjct: 553  GLGAAD-QANLLSRIRLAQERDEEIKGW----ALNNKTEYQTSNNGTIVVNGRVCVPNNR 607

Query: 1056 TMRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPGMKKQVAEYVSTCLTC*NAKVEHQK 1115
             ++  IL E H+S+ SIHPG NK+Y+DLK ++ W GMKK VA +V+ C TC   K EHQ 
Sbjct: 608  ALKEEILREAHQSKFSIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQV 667

Query: 1116 PAGKLQSLDVPEWKWDSISMDF 1137
            P+G LQ+L +PEWKWD I+MDF
Sbjct: 668  PSGLLQNLPIPEWKWDHITMDF 689



 Score =  249 bits (637), Expect = 6e-66
 Identities = 134/299 (44%), Positives = 188/299 (62%), Gaps = 27/299 (9%)

Query: 1188 HGVPSSIVSDR-------DSRFTSRFWGALQQALGTKLRLSSAYNPQTDGQTERTIQSLE 1240
            H VPS ++ +        D      FW A Q+ALGT++ LS+AY+PQTDGQ+ERTIQ+LE
Sbjct: 665  HQVPSGLLQNLPIPEWKWDHITMDFFWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLE 724

Query: 1241 DLLRACVLDHKGSWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCQTPLCWHQDGEHLV 1300
            D+LRAC LD  G+W++ L L                   ALYGR C+TPLCW   GE  +
Sbjct: 725  DMLRACALDWGGNWEKYLRL-------------------ALYGRACRTPLCWTPVGERRL 765

Query: 1301 IGPELVQQTTEEVKRIQEKMRIS*SRQKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAI 1360
             GP +V +TTE +K ++ K++ +  RQKSYA+ RRKELEFQ  D V+L+     G GR  
Sbjct: 766  FGPIIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFT 825

Query: 1361 KSKKLTPKFIGPYQITERVGPVAYRIALPPFLSHIHDVLHVSQLRKYMADDSHVLEPDDI 1420
              KKL+P+++GPY++ ERVG VAY++ LPP L+  H+V HVSQLRK +++    +E    
Sbjct: 826  SRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSNQEESVEDVPP 885

Query: 1421 QLKDDLTVVMPPIKIVDRSTKRLRNK*VSLVKVVWNQATGDA-TWELEDKMRESHPDLF 1478
             LK+++TV   P++I+DR TK  R K   L+KV+WN    +  TWE E+KM+ +  + F
Sbjct: 886  GLKENMTVEAWPVQIMDRMTKGTRGKSRDLLKVLWNCGGREQYTWETENKMKANFSEWF 944


>At3g29490 hypothetical protein
          Length = 438

 Score =  290 bits (741), Expect = 6e-78
 Identities = 154/381 (40%), Positives = 222/381 (57%), Gaps = 54/381 (14%)

Query: 1092 MKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTRRRFDAI 1151
            MK+ VA +V+ C  C   K EHQ P G LQSL +PEW                       
Sbjct: 1    MKRDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWNT--------------------- 39

Query: 1152 WVVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSRFWGALQ 1211
                        F+ I        LA+ ++++IV+LHGVP+                   
Sbjct: 40   ------------FLAIRKTDGAAVLAKKYVSEIVKLHGVPAE------------------ 69

Query: 1212 QALGTKLRLSSAYNPQTDGQTERTIQSLEDLLRACVLDHKGSWDELLPLIEFTYNNSFHA 1271
              +GTK+++S+ Y+PQTDGQ ERTIQ+LED+LR CVLD  G W + L L+EF YNNS+ A
Sbjct: 70   --MGTKVQMSTPYHPQTDGQFERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQA 127

Query: 1272 SIGMAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*SRQKSYA 1331
             IGMAP+EALYGR C+TPLCW Q GE  + G + VQ+TTE ++ ++  M+ +  RQ SYA
Sbjct: 128  GIGMAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQWSYA 187

Query: 1332 DNRRKELEFQAGDHVFLRVTPMTGVGRAIKSKKLTPKFIGPYQITERVGPVAYRIALPPF 1391
            D RR+ELEF+ GD V+L++  + G  R+I   KL+ +++GP++I ERVGPVAY + LP  
Sbjct: 188  DKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSLRYMGPFRIVERVGPVAYMLELPDV 247

Query: 1392 LSHIHDVLHVSQLRKYMADDSHVLEPDDIQLKDDLTVVMPPIKIVDRSTKRLRNK*VSLV 1451
            +   H V HVS LRK +  D  VL      L+ ++T+    +++++R  K L+ K +SL+
Sbjct: 248  MRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARQVRVLERRIKELQRKKISLI 307

Query: 1452 KVVWN-QATGDATWELEDKMR 1471
            KV+W+     + TW+ E +M+
Sbjct: 308  KVLWDCDGVTEETWQPEARMK 328


>At4g03650 putative reverse transcriptase
          Length = 839

 Score =  288 bits (737), Expect = 2e-77
 Identities = 128/223 (57%), Positives = 172/223 (76%)

Query: 727 EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
           E  + ++L+A  SKC FW  E+ FLGH++S++GV+VDP KIE+I  W +P  A++IRSF+
Sbjct: 591 EKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFL 650

Query: 787 GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
           GLAGYYRRF+K +A +  P+T+LT K+ PF W+ +CEE F  +K+ LT+  +LALP+ GE
Sbjct: 651 GLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGE 710

Query: 847 PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLY 906
           PY VY DAS  GLGC +MQ  KVIAYASRQL+ HE NYPTHDLE+AA+++ALKIWR YLY
Sbjct: 711 PYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLY 770

Query: 907 GSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*H 949
           G    +++DHKSLKY+F Q +LN+RQRRWME + DY+ ++  H
Sbjct: 771 GGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYH 813



 Score = 38.9 bits (89), Expect = 0.022
 Identities = 15/23 (65%), Positives = 22/23 (95%)

Query: 1214 LGTKLRLSSAYNPQTDGQTERTI 1236
            +GTK+++S+ Y+PQTDGQ+ERTI
Sbjct: 817  MGTKVQMSTTYHPQTDGQSERTI 839


>At2g06890 putative retroelement integrase
          Length = 1215

 Score =  287 bits (734), Expect = 4e-77
 Identities = 168/437 (38%), Positives = 246/437 (55%), Gaps = 35/437 (8%)

Query: 732  KELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFVGLAGY 791
            +ELYAN  KC F  + + FLG V+S+ GV VD  K+++I  W  PK   ++RSF GLAG+
Sbjct: 599  EELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGF 658

Query: 792  YRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGEPYDVY 851
            YRRF KD++ + +PLT++ KK+  F W +  EE+FQ +K +LT A +L L +  + +++ 
Sbjct: 659  YRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIE 718

Query: 852  CDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLYGSMFT 911
            CDAS  G+G V+MQ++K+IA+ S +L     NYPT+D EL A+V AL+ W+HYL+  +F 
Sbjct: 719  CDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFV 778

Query: 912  IYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMHVSSLM 971
            I++DH+SLK+L  Q+ LN R  RW+EF++ + + ++   GK NVVADALS++   +S+L 
Sbjct: 779  IHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVVADALSQRYTLLSTLN 838

Query: 972  VKELELLEAF*DLSLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETDEGLLEWRKLVTQGK 1031
            VK +                                ++IK   ETD    E  K   +  
Sbjct: 839  VKLMGF------------------------------EQIKEVYETDHDFQEVYKACEKFA 868

Query: 1032 APEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPG 1091
            +  +    D  L  + R+CVPN  ++R L + E H   L  H G+ K  + +  HF WP 
Sbjct: 869  SGRY-FRQDKFLFYENRLCVPN-CSLRDLFVREAHGGGLMGHFGIAKTLEVMTEHFRWPH 926

Query: 1092 MKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPLTRRRFDAI 1151
            MK  V      C TC  AK + Q P G    L +P+  W+ ISMDFV  LP T +  D+I
Sbjct: 927  MKCDVKRICGRCNTCKQAKSKIQ-PNGLYTPLPIPKHPWNDISMDFVMGLPRTGK--DSI 983

Query: 1152 WVVVDRLTKTAHFVPIS 1168
            +VV         F PIS
Sbjct: 984  FVVYSPFQIVYGFNPIS 1000



 Score = 42.4 bits (98), Expect = 0.002
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 24/144 (16%)

Query: 1304 ELVQQTTEEVKR-IQEKMRIS*SRQKSYADNRRKELEFQAGDHVFLRVTPMTGVGRAIKS 1362
            ELVQQ  E  +R I+EK ++        A+  R+E  F+ GD V++ +       +  + 
Sbjct: 1022 ELVQQIHENARRNIEEKTKL----YAKQANKGRREQIFEVGDMVWIHLRKERFPAQ--RK 1075

Query: 1363 KKLTPKFIGPYQITERVGPVAYRIALP--------PF--------LSHIHDVLHVSQL-R 1405
             KL P+  GP++I +R+   AY++ L         PF        +  I+D+ H  +L R
Sbjct: 1076 SKLMPRIDGPFKIIKRINDNAYQLDLQDEPDLRSNPFQEGGDDMIMDSINDMEHEPELER 1135

Query: 1406 KYMADDSHVLEPDDIQLKDDLTVV 1429
            + +A++   L  +D  + ++  VV
Sbjct: 1136 ELVAEEGAKLVAEDELVAEEKLVV 1159


>At3g29480 hypothetical protein
          Length = 718

 Score =  285 bits (730), Expect = 1e-76
 Identities = 155/335 (46%), Positives = 207/335 (61%), Gaps = 37/335 (11%)

Query: 759  GVAVDPSKIESIMSWEQPKIASDIRSFVGLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAW 818
            GV+VD  KIE+I  W +P  A++IRSF+GLAGYYRRFVK +A +  PLT+LT KN PF W
Sbjct: 415  GVSVDLEKIEAIKDWPRPTNATEIRSFLGLAGYYRRFVKGFASMAPPLTKLTGKNVPFVW 474

Query: 819  TEKCEESFQEMKKRLTTALILALPKEGEPYDVYCDASHNGLGCVMMQEKKVIAYASRQLK 878
            + +CEE F  +K+ LT+  +LALP+ GE Y VY DAS  GLGCV+MQ  KVIAYASRQL+
Sbjct: 475  SPECEEGFVSLKEILTSTPVLALPEHGESYMVYTDASRVGLGCVLMQRGKVIAYASRQLR 534

Query: 879  IHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEF 938
             HE NYPTHDLE++A                  +++DHKSLKY+  Q +LN+RQRRWME 
Sbjct: 535  KHEGNYPTHDLEMSA------------------VFTDHKSLKYIITQPELNLRQRRWMEL 576

Query: 939  LQDYEFDLQ*HPGKTNVVADALSRKAMHVS-----SLMVKELELLEAF*DLSLDVKIAPG 993
            + DY+ ++  H GK +VVADALSRK + V+       +V E+  L            A  
Sbjct: 577  VADYDLEIAYHHGKASVVADALSRKRVGVAPGQSVEALVSEIRALRL---------CAVA 627

Query: 994  KLSFGMVTVSS-GLLDEIKSKQETDEGLLEWRKLVTQGKAPEFSIGSDNILRCKGRVCVP 1052
            +   G+  V    LL  ++  QE DEGL+      ++ +  ++   ++  +   GRVCV 
Sbjct: 628  REPLGLEAVDRVDLLSRVRLAQEKDEGLI----AASKAEGSKYQFAANGTILVHGRVCVL 683

Query: 1053 NDATMRRLILDEGHKSRLSIHPGMNKMYQDLKLHF 1087
            ND  +RR IL E H S  SIHPG  KMY+DLK ++
Sbjct: 684  NDEELRREILSEAHASMFSIHPGATKMYRDLKEYY 718


>At2g05610 putative retroelement pol polyprotein
          Length = 780

 Score =  231 bits (588), Expect = 3e-60
 Identities = 147/472 (31%), Positives = 232/472 (49%), Gaps = 84/472 (17%)

Query: 727  EYCKGKELYANGSKCEFWMEEVKFLGHVISSQGVAVDPSKIESIMSWEQPKIASDIRSFV 786
            E  +   L+A  SKC F +  V++LGH IS +G+A DP+KI+++  W  P     +  F+
Sbjct: 218  EVMRVHHLFAKMSKCAFAVPRVEYLGHFISGEGIATDPAKIKAVQDWPVPVNLKQLCGFL 277

Query: 787  GLAGYYRRFVKDYAKLTSPLTQLTKKNQPFAWTEKCEESFQEMKKRLTTALILALPKEGE 846
            GL GYYRRF                                                   
Sbjct: 278  GLTGYYRRF--------------------------------------------------- 286

Query: 847  PYDVYCDASHNGLGCVMMQEKKVIAYASRQLKIHEKNYPTHDLELAAIVYALKIWRHYLY 906
             + V  DA  +G+G V+MQE   +A+ SRQLK  + +   ++ EL A+++ ++ WRHYL 
Sbjct: 287  -FVVEMDACGHGIGAVLMQEGHPLAFISRQLKGKQLHLSIYEKELLAVIFVVRKWRHYLI 345

Query: 907  GSMFTIYSDHKSLKYLFDQKDLNMRQRRWMEFLQDYEFDLQ*HPGKTNVVADALSRKAMH 966
             S F I +D +SLKYL +Q+     Q++W+  L ++++++Q   GK N+VADALSR    
Sbjct: 346  SSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYKQGKENLVADALSR---- 401

Query: 967  VSSLMVKELELLEAF*DLSLDVKIAPGKLSFGMVTVSSGLLDEIKSKQETD---EGLLEW 1023
                 V+  E+L                    +  V   LL EI++   TD   +G++  
Sbjct: 402  -----VEGSEVLH-----------------MALSVVECDLLKEIQAGYVTDGDIQGII-- 437

Query: 1024 RKLVTQGKAPEFSIGSDNILRCKGRVCVPNDATMRRLILDEGHKSRLSIHPGMNKMYQDL 1083
              L  Q  + +    S  +LR K ++ VPN++ ++  IL   H S +  H G    +Q +
Sbjct: 438  TILQQQADSKKHYTWSQGVLRRKNKIVVPNNSGIKDTILRWLHCSGMGGHSGKEVTHQRV 497

Query: 1084 KLHFWWPGMKKQVAEYVSTCLTC*NAKVEHQKPAGKLQSLDVPEWKWDSISMDFVTALPL 1143
            K  F+W  M K +  ++ +C TC   K ++    G LQ L +P+  W  +SMDF+  LPL
Sbjct: 498  KGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIPDRIWSDVSMDFIDGLPL 557

Query: 1144 TRRRFDAIWVVVDRLTKTAHFVPISLNYKVEKLAEIHIAKIVRLHGVPSSIV 1195
            +  +   I VVVDRL+K AHF+ ++  Y    +A+ ++  + +LHG PSSIV
Sbjct: 558  SNGK-TVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFKLHGCPSSIV 608



 Score = 79.7 bits (195), Expect = 1e-14
 Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 5/156 (3%)

Query: 1275 MAPYEALYGRRCQTPLCWHQDGEHLVIGPELVQQTTEEVKRIQEKMRIS*SRQKSYADNR 1334
            M PYEA+YG+     L +      + +    +Q+    +  ++  +  +  R K  AD  
Sbjct: 625  MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684

Query: 1335 RKELEFQAGDHVFLRVTPMTGVGRAIKS-KKLTPKFIGPYQITERVGPVAYRIALPPFLS 1393
              E EF+ GD+VF+++ P       ++S +KL+PK+ GPY++ +R G VAY++ LP   S
Sbjct: 685  ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPA-NS 743

Query: 1394 HIHDVLHVSQLRKY---MADDSHVLEPDDIQLKDDL 1426
             +H V HVSQLR     +   +H+L    + L+++L
Sbjct: 744  QVHPVFHVSQLRVLVGTVTTSTHLLRCYLMSLRENL 779


>At4g07850 putative polyprotein
          Length = 1138

 Score =  207 bits (526), Expect = 5e-53
 Identities = 100/210 (47%), Positives = 146/210 (68%)

Query: 754 VISSQGVAVDPSKIESIMSWEQPKIASDIRSFVGLAGYYRRFVKDYAKLTSPLTQLTKKN 813
           V S+ GV VD  K+++I  W  PK    +RSF GLAG+YRRFV+D++ L +PLT++ KKN
Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590

Query: 814 QPFAWTEKCEESFQEMKKRLTTALILALPKEGEPYDVYCDASHNGLGCVMMQEKKVIAYA 873
             F W +  E++FQ +K++LT A +L+LP   + +++ CDA   G+G V+MQ+KK IAY 
Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650

Query: 874 SRQLKIHEKNYPTHDLELAAIVYALKIWRHYLYGSMFTIYSDHKSLKYLFDQKDLNMRQR 933
           S +L     NYPT+D EL A+V AL+ W+HYL+   F I++DH+SLK+L  Q+ LN R  
Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710

Query: 934 RWMEFLQDYEFDLQ*HPGKTNVVADALSRK 963
           RW+EF++ + + ++   GK NVVADALSR+
Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRR 740



 Score =  204 bits (518), Expect = 4e-52
 Identities = 114/297 (38%), Positives = 170/297 (56%), Gaps = 15/297 (5%)

Query: 1007 LDEIKSKQETDEGLLEWRKLV-TQGKAPEFSIGSDNIL------RCKG------RVCVPN 1053
            L  +K +Q+ ++    W + + T     ++  G DN++      R +G      R+C+PN
Sbjct: 696  LKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRHEGFLFYDNRLCIPN 755

Query: 1054 DATMRRLILDEGHKSRLSIHPGMNKMYQDLKLHFWWPGMKKQVAEYVSTCLTC*NAKVEH 1113
             +++R L + E H   L  H G++K  + ++ HF WP MK+ V      C TC  AK + 
Sbjct: 756  -SSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFHWPHMKRDVERMCERCTTCKQAKAKS 814

Query: 1114 QKPAGKLQSLDVPEWKWDSISMDFVTALPLTRRRFDAIWVVVDRLTKTAHFVPISLNYKV 1173
            Q P G    L +P   W+ ISMDFV  LP TR   D+I+VVVDR +K AHF+P       
Sbjct: 815  Q-PHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDA 873

Query: 1174 EKLAEIHIAKIVRLHGVPSSIVSDRDSRFTSRFWGALQQALGTKLRLSSAYNPQTDGQTE 1233
              +A +   ++VRLHG+P +IVSDRD++F S FW  L   LGTKL  S+  +PQTDGQTE
Sbjct: 874  MHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTE 933

Query: 1234 RTIQSLEDLLRACVLDHKGSWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCQTPL 1290
               ++L  LLRA +  +  +W++ LP +EF YN+S H++   +P++ +YG    TPL
Sbjct: 934  VVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPL 990


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.342    0.148    0.511 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,725,100
Number of Sequences: 26719
Number of extensions: 1214929
Number of successful extensions: 3797
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3582
Number of HSP's gapped (non-prelim): 135
length of query: 1489
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1377
effective length of database: 8,326,068
effective search space: 11464995636
effective search space used: 11464995636
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 67 (30.4 bits)