BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0388a.1
         (728 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g37060 Athila retroelment ORF 1, putative                          289  4e-78
At4g07640 putative athila transposon protein                          288  7e-78
At4g08050                                                             244  1e-64
At3g32890 Athila ORF 1, putative                                      241  1e-63
At3g32000 unknown protein                                             239  5e-63
At2g06160 putative Athila retroelement ORF1 protein                   233  3e-61
At2g10670 pseudogene                                                  228  7e-60
At3g30655 hypothetical protein, 3' partial                            207  2e-53
At1g36130 hypothetical protein                                        197  2e-50
At3g30630 hypothetical protein                                        177  2e-44
At2g07480 F9A16.15                                                    175  9e-44
At4g07370                                                             150  2e-36
At2g10620 putative Athila retroelement ORF1 protein                   149  5e-36
At1g41690 hypothetical protein                                        148  1e-35
At4g07600                                                             142  5e-34
At3g31500 hypothetical protein                                        141  1e-33
At1g38440 hypothetical protein                                        130  3e-30
At2g14040 putative retroelement pol polyprotein                       127  2e-29
At3g31340 Athila ORF 1, putative                                      125  8e-29
At2g13260 putative Athila retroelement ORF1 protein                   123  4e-28

>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  289 bits (739), Expect = 4e-78
 Identities = 217/734 (29%), Positives = 342/734 (46%), Gaps = 113/734 (15%)

Query: 29  GSIVSPDGTGNFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIR 88
           G +  P    NFE++  LI +V  N++ G  +EDP  H++ F R C+  ++  VS D  +
Sbjct: 28  GIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGFK 87

Query: 89  LSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDE 148
           L LFPFSL D A +W  S PQGSITSW D  + F  +F   +   +L+NDI  FTQ+ +E
Sbjct: 88  LRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNE 147

Query: 149 NLYEAWERFKKLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYE 208
             YEAWERFK    +CP H +                    LD AS+G F     + G+E
Sbjct: 148 TFYEAWERFKGYQTQCPHHEML-------------------LDTASNGNFLNKDVEDGWE 188

Query: 209 LIEKMA-------------IRAMNSSNDRQARRGVLEVEAYDQLMASNKQLSKQMNEIQN 255
           ++E +A             IR  + S+++  R      +  D+L+   ++    + + + 
Sbjct: 189 VVENLAQSDGNYNEDYDRSIRTSSDSDEKHRREMKAMNDKLDKLLLMQQKHIHFLGDDET 248

Query: 256 QMKTTKIGSRVAKVEFVTCGG-------------PHDSEECTETRPEEEVKAMGQARNDP 302
                    ++ +V +V   G             P+ S   T     ++     Q +N P
Sbjct: 249 LQVQDGETLQLEEVSYVQNQGGYNKGFNNFKQNHPNLSYRSTNVANRQDQVYPSQQQNQP 308

Query: 303 FSNT-YNPGWRNHPNFSWRQGSSGQGNGFQRQFPSQGFQGQSLRQP-------------Q 348
                YN G    P   +      QGN +Q+Q P  GF  Q  +QP             Q
Sbjct: 309 KPFVPYNQGQGYVPKQQY------QGN-YQQQLPPPGFT-QQQQQPALTTPDSDLKNMLQ 360

Query: 349 ERGEGEGSGSKKSLEELVETFINRTENNYKN----QEAANKNLENQFGQLAKQIAERPQG 404
           +  +G+ +G+    + + E   N+ + +Y +     EA    +    GQ     A +  G
Sbjct: 361 QILQGQATGAMDLSKRMAEIH-NKVDCSYNDINIKVEALTSKIRYIEGQTGSTAAPKFTG 419

Query: 405 IFPSDCIPNPKQENASVVATRSGRVMSELKKKTE----------------GEKREEIVGG 448
             PS    +  +E A  +  RSG+ +   +   +                G   E+ +  
Sbjct: 420 --PSGKSMSNSKEYAHAITLRSGKELPTKESPNQNTEDSLDQDGEDFCQNGNSAEKAIEE 477

Query: 449 EVV------------------VPIKVREEVDLTPE-TSKIPFPKALAKKSLDKKFSKFVD 489
            ++                     K +E V + P     +PFP    K  + K  +    
Sbjct: 478 PILHQPTRPLAPAASPLVEKPAAAKTKENVFIPPPYKPPLPFPGRFKKVMIQKYKALLEK 537

Query: 490 VFKKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEECSAILQRK-MPKK 548
             K L +++P  D L  +P   K++KD++    R+K V   V+++ ECSAI+Q+K +PKK
Sbjct: 538 QLKNLEVTMPLVDCLALIPDSNKYVKDMI--TERIKEVQGMVVLSHECSAIIQQKIIPKK 595

Query: 549 RRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLK 608
             DPGSFT+P  +  +A  + LCDLGAS++LMPL + ++L   +  P  +SL +ADRS++
Sbjct: 596 LGDPGSFTLPCALGPLAFSKCLCDLGASVSLMPLPVAKKLGFNKYKPCNISLILADRSVR 655

Query: 609 TPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLILPV 668
             +G++ED+ V +     P DFVVL+M+E+ K PLILGRPFLA  RA IDV KG + L +
Sbjct: 656 ISHGLLEDLPVMIGVVEVPTDFVVLEMDEEPKDPLILGRPFLARARAIIDVKKGKIDLNL 715

Query: 669 GKE-KVRFSVFNPM 681
           G++ K+ F + N M
Sbjct: 716 GRDLKMTFDITNTM 729


>At4g07640 putative athila transposon protein
          Length = 866

 Score =  288 bits (737), Expect = 7e-78
 Identities = 221/710 (31%), Positives = 350/710 (49%), Gaps = 68/710 (9%)

Query: 39  NFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRD 98
           NFE++  LI+++  N++ G  +EDP  H++ F R CN  ++  VS D  +L LFPFSL D
Sbjct: 38  NFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGFKLRLFPFSLGD 97

Query: 99  TAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEAWERFK 158
            A  W  + P  SI +W+D  + F ++F   A   +L+N+I  F+Q T E+  EAWERFK
Sbjct: 98  KAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGESFCEAWERFK 157

Query: 159 KLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYELIEKMAIRAM 218
               +CP H  T+A  ++  Y G+    R  LD AS+G F     + G+EL++ +A    
Sbjct: 158 GYTNQCPHHGFTKASMLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWELVDNLAQSDG 217

Query: 219 NSSNDRQARRGVLEV-EAYDQLMASNKQLSKQMNEIQ-NQMKTTKIGSRVAKVEFVTCGG 276
           N + D    R V +  ++ D+     K L+ +++ I  NQ K   +   V   +F    G
Sbjct: 218 NYNED--CDRTVRDTADSDDKHRKEIKALNDKLDRILLNQQK--HVHFLVDDEQFQVQDG 273

Query: 277 PHDSEECTETRPEEEVKAMGQARNDPFSNTYNPGWRNHPNFSWR--------------QG 322
                   E    EEV  +    N      YN    N+PN S+R              Q 
Sbjct: 274 --------EGNQLEEVSYINN--NQSGYKGYNNFKTNNPNLSYRSTNIANPQDQVYPPQQ 323

Query: 323 SSGQGNGF----QRQFPSQGFQGQSLRQPQERGEGEGSGSKKSLEELVETFINRT-ENNY 377
              Q   F    Q   P Q FQG    QP     G+   +++  + + E   ++  E+  
Sbjct: 324 QQVQNKPFVPYNQGFVPKQQFQGNY--QPPPPPGGKALPTREEPKTVTEDSEDQDGEDLS 381

Query: 378 KNQEAANKNLENQFGQLAKQ----IAERPQGIFPSDCIPNPKQENASVVATRSGRVMSEL 433
             ++ A+K  E    Q  +Q      E+P  + P D +  P        A+ +      +
Sbjct: 382 LEKDQADKPHEQPLDQSLEQPLDLSLEQPLDL-PLDNVTRPTTRPIFPAASATAPKPITV 440

Query: 434 KKKTEGEKREEIVGGEVVVPIKVREEVDLTPETSKIPFPKALAKKSLDKKFSKFVDVFKK 493
           K K +           V VP          P   ++PFP    K   DK  + F    K+
Sbjct: 441 KNKEK-----------VFVP---------PPYKPELPFPGRHKKALADKYRAMFAKNIKE 480

Query: 494 LHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEECSAILQRKM-PKKRRDP 552
           + + IP  DAL  +P   KF+KD++ +R  ++ V   V+++  CSAI+Q+K+ PKK  DP
Sbjct: 481 VELRIPLVDALALIPDSHKFLKDLIVER--IQEVQGMVVLSHGCSAIIQKKIIPKKLSDP 538

Query: 553 GSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLKTPYG 612
           GSFT+P  +  +A    LCDLGAS++LM L++ +RL   +   + +SL +ADRS++ P+G
Sbjct: 539 GSFTLPCSLGPLAFNRCLCDLGASVSLMALSVAKRLGFTQYKSSNISLILADRSVRIPHG 598

Query: 613 IVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLILPVGKE- 671
           ++++  + +     P DFVVL+M+E+ K PLILGRPFLAT  A IDV KG + L +GK+ 
Sbjct: 599 LLKNFGITIGAVEIPTDFVVLEMDEEPKDPLILGRPFLATAGAMIDVKKGKIDLSLGKDF 658

Query: 672 KVRFSVFNPMIETNHDNDFVCDVIRSRSKVSEETPKVNSQIDEFHPALIK 721
           ++ F V + M +   +       I+   ++++E  +  ++ D  + AL K
Sbjct: 659 RMTFDVKDAMKKPTIEGQLFW--IKEMDQLADELLEELAEEDHLNSALTK 706


>At4g08050
          Length = 1428

 Score =  244 bits (623), Expect = 1e-64
 Identities = 201/686 (29%), Positives = 329/686 (47%), Gaps = 70/686 (10%)

Query: 39  NFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRD 98
           NFE++  LI+++  N++ G  +EDP  H++ F R CN  ++  VS D  +L LFPFSL D
Sbjct: 38  NFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGD 97

Query: 99  TAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEAWERFK 158
            A  W  +    SIT+W+D  + F ++F   A   +L+N+I  F+Q T E+  EAWERFK
Sbjct: 98  KAHIWEKNLSHDSITTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTGESFCEAWERFK 157

Query: 159 KLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYELIEKMAIRAM 218
               +CP H+ T+A  ++  Y G+    R  LD AS+G F     + G+EL+E +A    
Sbjct: 158 GYTNQCPHHSFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWELVENLAQSDG 217

Query: 219 NSSND-RQARRGVLEVEAYDQLMASNKQLSKQMNEIQNQMKTTKIGSRVAKVEFVTCGGP 277
           N + D  +  RG  + +  D+     K L+ +++ I        + S+   V F+     
Sbjct: 218 NYNEDCDRTVRGTADSD--DKHRKEIKALNDKLDRI--------LLSQQKHVHFLVDDEQ 267

Query: 278 HDSEECTETRPEE-EVKAMGQARNDPFSNTYNPGWRNHPNFSWRQGSSGQGNGFQRQFPS 336
           +  ++    + EE  +    Q +N PF   YN G+     F        QGN   +  P 
Sbjct: 268 YQVQDGEGNQLEEVYLPQQKQGQNKPFV-LYNQGFVPKQQF--------QGN--YQPPPP 316

Query: 337 QGF---QGQSLRQPQERG--------EGEGSGSKKSLEELVETFINRTENNYKN----QE 381
            GF   Q Q    P  +         +G+ S S +  ++L E   ++ + +Y +     E
Sbjct: 317 PGFVTQQNQCHAAPDAKMKQMVKQLLQGQASSSMEIAKKLSELH-HKLDCSYNDLNAKVE 375

Query: 382 AANKNLENQFGQLAKQIAERPQGIFPSDCIPNPKQENASVVAT-------RSGRVMSELK 434
           A N  +    GQ A   + +   + P   I NPK+   +   T        +  V+  + 
Sbjct: 376 ALNTKVRYLEGQSASTFSPKVTRL-PGKSIQNPKEYATAHAITICHDRELPTRHVLDLIT 434

Query: 435 KKT---EGEKREEI----------VGGEVVVPIKVREEVDLTPETSKIPFPKALAKKSLD 481
           +     EGE   ++           G   +      E+  +     K   P  L  ++L 
Sbjct: 435 RDNDVQEGEASTQVEASVVEFNHSAGSRHLTQSTSEEKAAIIERMVKRFKPTPLPLRALP 494

Query: 482 KKFSK-FVDVFK--------KLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVL 532
             F K +++ +K        ++   +P  + L  +    K +++++ +R ++    +   
Sbjct: 495 WTFRKAWMERYKSVAAKQLDEIEAVMPLMEVLNLILDPHKVVRNLILERIKMYHDSDDES 554

Query: 533 MTEECSAILQRKMPKKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGE 592
                 A  +R + +K  DPGSFT+P  I   A  + LCDLGAS+NLMPL+M  RL   +
Sbjct: 555 DATPSRAADKRIVQEKLEDPGSFTLPCSIGEFAFSDCLCDLGASVNLMPLSMARRLEFIQ 614

Query: 593 VTPTMLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLAT 652
             P  L+L +ADRS +  +G+++D+ V ++    P DFVVLDME + K PLILGRPFLA+
Sbjct: 615 YKPCDLTLILADRSSRKHFGMLKDLPVMINGVEVPTDFVVLDMEVEHKDPLILGRPFLAS 674

Query: 653 GRAKIDVDKGHLILPVGKE-KVRFSV 677
             A IDV +G + L +GK  K++F++
Sbjct: 675 VGAVIDVKEGKIGLNLGKHIKLQFNI 700


>At3g32890 Athila ORF 1, putative
          Length = 755

 Score =  241 bits (615), Expect = 1e-63
 Identities = 193/670 (28%), Positives = 318/670 (46%), Gaps = 59/670 (8%)

Query: 49  LVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRDTAEEWLNSQP 108
           ++  N++ G  +EDP  H++ F R  N  ++  VS D  +L LFPFSL D A  W  + P
Sbjct: 1   MIQGNKFHGLPMEDPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLP 60

Query: 109 QGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEAWERFKKLLRRCPQHN 168
             SIT+W+D  + F ++F   A   +L+N+I  F+Q T E+  EAWERFK    +CP H 
Sbjct: 61  HDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTRESFCEAWERFKGYTNQCPHHG 120

Query: 169 LTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYELIEKMAIRAMNSSNDRQARR 228
            T+A  ++  Y G+    R  LD +S+G F     + G+EL+E +A    N + D     
Sbjct: 121 FTKASLLSTLYRGVLLRIRMLLDTSSNGNFQNKDVEEGWELVENLAQSDGNYNEDCDRN- 179

Query: 229 GVLEVEAYDQ-----LMASNKQLSKQMNEIQNQMKTTKIGSRVAKVEFV--TCGGPHDSE 281
              E++A +      L++  K +   +++ Q Q++  + G+++ +V ++    GG     
Sbjct: 180 ---EIKALNDKLDMILLSQQKHVHFLVDDKQFQVQYGE-GNQLEEVSYIINNQGGYKGYN 235

Query: 282 ECTETRPEEEVKAMG--------QARNDPFSNTYNPGWRNHPNFSWRQGSSGQGNGFQRQ 333
                 P    ++          Q +N PF   YN G+     F        QGN   + 
Sbjct: 236 NFKTNNPNLSYRSTNVANPPQQQQGQNKPFV-PYNQGFVPKQQF--------QGN--YQP 284

Query: 334 FPSQGFQGQSLRQP-----------QERGEGEGSGSKKSLEELVETFINRTENNYKNQ-- 380
            P  GF  Q  + P           Q+  E + S S +  ++L E   ++ + +Y +   
Sbjct: 285 PPPPGFTTQQNQGPAAPDAEMKQMVQQLLEVQASSSMEIAKKLSELH-HKLDCSYNDMNA 343

Query: 381 --EAANKNLENQFGQLAKQIAERPQGIFPSDCIPNPKQ-ENASVVATRSGRVMSELKKKT 437
             EA N  +    GQ A     +  G+ P   I NPK+   A  +     R +       
Sbjct: 344 KVEALNTKVRYLEGQSASTSTPKVTGL-PGKSIQNPKEYATAHAITICHDRELPTRHVPD 402

Query: 438 EGEKREEIVGGEVVVPIKVREEVDLTPETSKIPFPKALAKKSLDKKFSK-FVDVFK---- 492
                 ++  GE        E+  +     K   P  L   +L   F K +++ +K    
Sbjct: 403 FITGDSDVQDGEASTQSTSEEKAAIIERMVKRFKPTPLPSSALPWTFRKAWMEKYKSVAS 462

Query: 493 ----KLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEECSAILQRKMPKK 548
               ++   +P  + L  +P   K +++++ +R ++    +         A  +R + +K
Sbjct: 463 KQLDEIEAVMPLIEVLNLIPDPHKDVRNLILERIKMYHDSDDESDATPSRASDKRIVQEK 522

Query: 549 RRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLK 608
             DPGSFT+P  I  +A  + LCDLGAS++LMPL++  RL   +  P  L+L +ADRS +
Sbjct: 523 LEDPGSFTLPCSIGELAFSDCLCDLGASVSLMPLSVARRLEFIQYKPCDLTLILADRSFR 582

Query: 609 TPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLILPV 668
            P+G+++D+ V ++    P DFVVLDME + K PLILGRP LA+  A IDV +G + L +
Sbjct: 583 KPFGMLKDLPVMINGVEVPTDFVVLDMEVEHKDPLILGRPLLASVGAVIDVREGKISLNL 642

Query: 669 GKE-KVRFSV 677
           GK  K++F +
Sbjct: 643 GKHIKLQFGI 652


>At3g32000 unknown protein
          Length = 839

 Score =  239 bits (609), Expect = 5e-63
 Identities = 193/684 (28%), Positives = 324/684 (47%), Gaps = 62/684 (9%)

Query: 39  NFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRD 98
           NFE++  LI+++  N++ G  +EDP  H++ F R CN  ++  VS +  +L LFPFSL D
Sbjct: 38  NFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSENGFKLRLFPFSLGD 97

Query: 99  TAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEAWERFK 158
            A  W  + P  SIT+ +D  + F ++F       +L+N+I  F+Q   E+  EAWERFK
Sbjct: 98  KALIWEMNLPHDSITTRDDCKKAFLSKFFSNDRTARLRNEISGFSQKIGESFCEAWERFK 157

Query: 159 KLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYELIEKMA---- 214
               +CP H  T+A  ++  Y G+    R  LD AS+G F     + G+EL++ +A    
Sbjct: 158 DYTNQCPHHGFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWELVDNLAQSDG 217

Query: 215 ---------IRAMNSSNDRQARRGVLEVEAYDQ-----LMASNKQLSKQMNEIQNQMKTT 260
                    +R    S+D+  +    E++A +      L++  K +   +++ Q Q++  
Sbjct: 218 NYNEDCDRTVRGTADSDDKHRK----EIKALNDKLDRILLSQQKHVDFLVDDEQYQVQDG 273

Query: 261 KIGSRVAKVEFV--TCGGPHDSEECTETRPEEEVKAMGQARNDPFSNTYNP---GWRNHP 315
           + G+++ +V ++    GG           P    ++   A  +P    Y P     +N P
Sbjct: 274 E-GNQLEEVSYINNNQGGYKGYNNFKTNNPNLSYRSTNVA--NPQDQVYPPQQQQGQNKP 330

Query: 316 NFSWRQG--SSGQGNGFQRQFPSQGFQGQSLRQP-----------QERGEGEGSGSKKSL 362
              + QG     Q  G  +Q P  GF  Q  + P           Q+  +G+ S S +  
Sbjct: 331 FVPYNQGFVPKQQFQGNYQQPPPPGFAPQQNQGPATPDAEMKQMVQQLLQGQASSSMEIA 390

Query: 363 EELVETFINRTENNYKN----QEAANKNLENQFGQLAKQIAERPQGIFPSDCIPNP---- 414
           ++L E   ++ + +Y +     EA N  +    GQ A   A +  G+   D         
Sbjct: 391 KKLSELH-HKLDCSYNDLNAKVEALNTKVRYLEGQSASTSAPKVTGLPGKDSDVQEGEAF 449

Query: 415 KQENASVVATRSGRVMSELKKKTEGEKREEIVGGEVVVPIKVREEVDLTPETSKIPFPKA 474
            Q   SVV          L + T  EK          +  ++ +    TP  S+   P  
Sbjct: 450 TQVEVSVVEFNHSAGSRHLIQSTSEEK--------AAIIERMVKRFKPTPLPSR-ALPWT 500

Query: 475 LAKKSLDKKFSKFVDVFKKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMT 534
             K  +++  S       ++   +P  + L  +P   K +++++ +R ++    +     
Sbjct: 501 FRKSWMERYKSVAAKQPDEIEAVMPLMEVLNLIPDPHKDVRNLILERIKMYHDSDDESDA 560

Query: 535 EECSAILQRKMPKKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVT 594
               A  +R + +K  DPGSF++P  I   A  + LCDLGA ++LMP ++  RL   +  
Sbjct: 561 TPSRAADKRIVQEKLEDPGSFSLPCSIGEFAFSDCLCDLGAFVSLMPCSVARRLEFIQYK 620

Query: 595 PTMLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGR 654
           P  L+L +ADRS + P+G+++D+ V ++    P DFVVLDME + K PLILGRPFLA+  
Sbjct: 621 PCDLTLILADRSSRKPFGMLKDLPVMINGVEVPTDFVVLDMEVEHKDPLILGRPFLASVG 680

Query: 655 AKIDVDKGHLILPVGKE-KVRFSV 677
           A IDV +G + L +GK  K++F +
Sbjct: 681 AVIDVREGKIGLNLGKHIKLQFGI 704


>At2g06160 putative Athila retroelement ORF1 protein
          Length = 750

 Score =  233 bits (594), Expect = 3e-61
 Identities = 198/716 (27%), Positives = 330/716 (45%), Gaps = 96/716 (13%)

Query: 39  NFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRD 98
           NFE++  LI +V  N++ G  +ED   H++ F R C+  ++  VS D  +  LFPFSL D
Sbjct: 38  NFEIKSGLIAMVQGNKFHGLPMEDSLDHLDEFERLCDLTKINGVSEDGFKFRLFPFSLGD 97

Query: 99  TAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEAWERFK 158
               W  + PQ SIT+W+D  + F  +F   +   +L+N+I  FTQ  +E+  EAWERFK
Sbjct: 98  KTHLWEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLRNEISGFTQKQNESFCEAWERFK 157

Query: 159 KLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYELIEKMA---- 214
               +CP     QA  ++  Y G+    R  LD AS+G F     + G+EL+E +A    
Sbjct: 158 GYQTKCPHPGFKQASLLSTLYRGVLPKLRMLLDTASNGNFLNKDVEKGWELVENLAQSDG 217

Query: 215 ---------IRAMNSSNDRQARRGVLEVEAYDQLMASNKQLSKQMNEIQNQMKTTKI--- 262
                    I   + S+D+  R    E++A +  +    Q+ ++     ++ +  +I   
Sbjct: 218 NYNENYDKSISTSSESDDKHHR----EIKALNDKIDKLLQVQQKHVHFASEHEVFQIQEG 273

Query: 263 -GSRVAKVEFVT------------CGGPHDSEECTE-TRPEEEVKAMGQARNDP---FSN 305
              + A++ +V                P+ S   T    P+++V    Q  N P    S 
Sbjct: 274 ENDQCAEISYVQNQDGYNKGYNNYRPNPNLSYRSTNVANPQDQVYPQQQQLNQPKPFVSY 333

Query: 306 TYNPGWRNHPNFSWRQGSSGQGNGFQRQFPSQGFQGQSLR--QPQERG---------EGE 354
             + G+   P F           G+Q+Q P  GF  Q  +   PQE           +G+
Sbjct: 334 NQSQGFVPKPQFQ---------GGYQQQQPPPGFTPQQYQASTPQELDIRNMLQKIMQGQ 384

Query: 355 GSGSKKSLEELVETFINRTENNYKNQEAANKNLENQFGQLAKQIAERPQGIFPSDCIPNP 414
           G+G  ++ ++L +  +N   + YK +  + +         +  +   P  +     I NP
Sbjct: 385 GAGVMEAAKKLAD--LNIKIDRYKLESLSTRVRYLDGITASPPVTNNPCQV-SGKAIQNP 441

Query: 415 KQ-ENASVVATRSGRVMSELKKKTEGEKREEIVGGEVVVPIKVR-EEVDLTPET----SK 468
           K+   A  +  R  R +S     T   +   I  GE  V I+V   E+D   +T      
Sbjct: 442 KEYATAHAIIIRHDRELSTQHVSTSNTEDSVIQEGEASVQIEVSVAEIDYAAQTFYQAQS 501

Query: 469 IPFPKALAKKSLDKKFS-----------KFVDVFKKLHISI------------PFADALE 505
               KA   + + K+F             F   +K ++ S+            P  + L+
Sbjct: 502 DLEEKATIIERMVKRFKPAPSPSLALPWTFRKAWKSIYESLAEKQLDEMESVMPLVEVLK 561

Query: 506 QMPIYAKFMKDILHKRRRL---KGVDETVLMTEECSAILQRKMPKKRRDPGSFTIPVEIE 562
            +    K +++++ +R  +      +E V+M +   A  +R + +K  DPGSFT+P  I 
Sbjct: 562 LISDPHKDVRNLILERLNIYQDSDDEEDVIMHQ---AAGERIIQEKLEDPGSFTLPCSIS 618

Query: 563 GMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLKTPYGIVEDVMVWVD 622
            +     LCDLGAS++LMPL++  +L   +     ++L +ADR+ + P+ I+EDV V ++
Sbjct: 619 QLTFSNCLCDLGASVSLMPLSVARKLRFVQYKSCDITLILADRTSRRPFSILEDVPVMIN 678

Query: 623 KYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLILPVGK-EKVRFSV 677
               P DFVVL+M+E  K PLILGR FLA+  A IDV  G + L +G+ +K++F +
Sbjct: 679 GVEVPTDFVVLEMDEKSKDPLILGRLFLASVGAVIDVRFGKIDLNLGRHDKLQFDI 734


>At2g10670 pseudogene
          Length = 929

 Score =  228 bits (582), Expect = 7e-60
 Identities = 197/687 (28%), Positives = 310/687 (44%), Gaps = 76/687 (11%)

Query: 29  GSIVSPDGTGNFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIR 88
           G ++ P    NF+++  LI +V  N++ G  +EDP  H++   R C   ++  VS D  +
Sbjct: 60  GIVLRPVQNNNFKIKSGLIAMVQGNKFHGLPMEDPLDHLDELERLCGLTKINGVSEDGFK 119

Query: 89  LSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDE 148
           L LFPFSL D A  W  + P+ SIT+W+D    F  +F   +   +L+N+I  FT   +E
Sbjct: 120 LRLFPFSLGDKAHLWEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLRNEISGFTLKQNE 179

Query: 149 NLYEAWERFKKLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYE 208
           +  EAWERFK    +CP H  +QA  +   Y G+    R  LD AS+G F     + G+E
Sbjct: 180 SFCEAWERFKGYQTKCPHHGFSQASLLNTLYRGVLPKIRMLLDTASNGNFLKKDIEEGWE 239

Query: 209 LIEKMAIRAMNSSNDRQARRGVLEVEAYDQLMASNKQLSKQMNE-IQNQMKTTKIGSRVA 267
           L+E +A ++  + N+   R         D+     K L+ ++++ IQ Q K         
Sbjct: 240 LVENLA-QSGGNYNEDYGRSIYTSSNTDDKHHREMKALNDKLDKIIQMQQK--------- 289

Query: 268 KVEFVTCGGPH-----DSEECTETR------PEEEVKAMGQARNDPFSNTYNPGWRNHPN 316
            V F++   P      ++++C E R      P     A       PF   YN      P 
Sbjct: 290 HVHFISEDEPFQVQEGENDQCAEIRYVHNQGPSLPSAAAAAEPTKPFV-PYNQSLGFVPK 348

Query: 317 FSWRQGSSGQGNGFQRQFPSQGF--QGQSLRQPQERG---------EGEGSGSKKSLEEL 365
             ++        G+Q+Q P  GF    Q    PQ            +G+ +G+ +  ++L
Sbjct: 349 QQFQ-------GGYQQQQPPPGFTPHQQQAHAPQNSDIMTVLQQLIQGQATGAMEIAKKL 401

Query: 366 --VETFINR--TENNYKNQEAANKNLENQFGQLAKQIAERPQGIFPSDCIPNPKQ-ENAS 420
             V   ++R   E N K  E+ +  +    G LA           P   I NPKQ   A 
Sbjct: 402 SKVNNKVDRQGVELNSK-FESMSTRMRYVEGILASPSVNNNPCQLPGKAIQNPKQYSTAH 460

Query: 421 VVATRSGRVMSELKKKTEGEKREEIVGGE-----VVVPIKVREEVDLTPETSKIPFPKAL 475
            +     R +      T   +   I+ GE      V+     EE  LT + ++   P A 
Sbjct: 461 AITITHDRELPTRYVPTSNTEDSVILEGEDFYQDDVLADNPIEEPILTSQPTRPQAPPA- 519

Query: 476 AKKSLDKKFSKFVDVFKKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTE 535
                   F+K  +  K   I          +P   +F K ++ K R L       +   
Sbjct: 520 ------TPFAKKTEAAKTKDIDFVPPPYKPLLPFPGRFKKVLVAKYRALLEKHIKDIPLV 573

Query: 536 ECSAILQRKMPKKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTP 595
           +C A++                  E + +     LCDLGAS++LMPL++ ++L      P
Sbjct: 574 DCLALIHD----------------EHKQLTFNNCLCDLGASVSLMPLSVVKKLGFVHYKP 617

Query: 596 TMLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRA 655
             L+L +ADR+ KTP+G++EDV V ++    P DFVVL+M+ + K PLILGRPFLA+  A
Sbjct: 618 CDLTLILADRTSKTPFGLLEDVPVMINGVEVPTDFVVLEMDGESKDPLILGRPFLASVGA 677

Query: 656 KIDVDKGHLILPVGKE-KVRFSVFNPM 681
            IDV +G + L +G++ K++F + + M
Sbjct: 678 VIDVKQGKINLNLGEDVKMKFDIRDAM 704


>At3g30655 hypothetical protein, 3' partial
          Length = 660

 Score =  207 bits (526), Expect = 2e-53
 Identities = 179/644 (27%), Positives = 286/644 (43%), Gaps = 77/644 (11%)

Query: 34  PDGTGNFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFP 93
           P    NFE++  LI +V  N++ G  +EDP  H++ F R     ++  VS D  +L LFP
Sbjct: 33  PVQNNNFEIKSGLIAMVQGNKFHGLPMEDPLDHLDEFERLYGLTKINGVSEDGFKLRLFP 92

Query: 94  FSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEA 153
           FSL D A  W  + PQ SIT+W+D  + F  +F   +   +L+N+I  FTQ  +E+  EA
Sbjct: 93  FSLGDKAHLWEKTLPQNSITAWDDCKKAFLAKFFSNSRTARLRNEISGFTQKQNESFGEA 152

Query: 154 WERFKKLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYELIEKM 213
           WERFK    +CP H   QA  ++  Y G+    R  LD AS+G F     + G+EL+E  
Sbjct: 153 WERFKGYQTKCPHHGFKQASLLSTLYRGVLPKIRILLDTASNGNFLKKDVEEGWELVENF 212

Query: 214 AIR--AMNSSNDRQARRGVLEVEAYD-QLMASNKQLSKQMNEIQNQMKTTKIGSRVAKVE 270
           A      N   DR  R      + +D ++ A N +L K    +Q Q K          V 
Sbjct: 213 AQSDGNYNEDYDRSIRTSSDSNDKHDREMKALNDKLEK---IVQMQQK---------HVH 260

Query: 271 FVTCGGPHDSEECTETRPEEEVKAMGQARNDPFSNTYNPGWRNHPNFSWRQG-------- 322
           F++   P   +E  + +  E      Q   +   N Y P    +PN S+R          
Sbjct: 261 FISEDEPFPVQEGEKDQWAEISYVQNQGGYNKGYNYYRP----NPNLSYRSTNVANPQDQ 316

Query: 323 ------------------SSGQG--------NGFQRQFPSQGFQGQSLRQP--------- 347
                             +  QG         G+Q+Q P  GF  Q    P         
Sbjct: 317 VYAQQQQQQNQPKPFVPYNQNQGFIPKQQFQGGYQQQQPQPGFTPQQQHAPAPQNSDIMI 376

Query: 348 --QERGEGEGSGSKKSLEEL--VETFINRTENNYKNQ-EAANKNLENQFGQLAKQIAERP 402
             Q+  +G+ +G+ +  ++L  V   I+R      N+ E+ +  +    G LA     + 
Sbjct: 377 MLQQLIQGQATGAMEIAKKLCEVNNKIDRQGVELNNKSESMSTRMRYVEGILASPSVNKN 436

Query: 403 QGIFPSDCIPNPKQ-ENASVVATRSGRVMSELKKKTEGEKREEIVGGE-----VVVPIKV 456
               P + I NPK+      +     R +      T   +   I+ GE      V+    
Sbjct: 437 PCQLPGNAIQNPKEYATVHAITITHDRELPTRYVPTSSTEDSVILHGEDFYQDDVLANNT 496

Query: 457 REEVDLTPETSKIPFPKA--LAKKSLDKKFSKFVDVFKKLHISIPFADALEQMPIYAKFM 514
            EE  LT ++++     A    +K    K    V V       +PF    +++ + AK+ 
Sbjct: 497 IEEPILTSQSTRPQASPATHFVEKPEAAKTKDTVFVPPPYKPPLPFPGRFKKV-LVAKYR 555

Query: 515 KDILHKRRRLKGVDETVLMTEECSAILQRK-MPKKRRDPGSFTIPVEIEGMADVEALCDL 573
             +  + + +  V    L+ +E +AI ++K +P+K  DPGSFT+P  I  +     LCDL
Sbjct: 556 ALLEKQIKDMPLVAYLALIPDEHNAITRQKIVPEKLEDPGSFTLPCSIRQLTFSNCLCDL 615

Query: 574 GASINLMPLTMFERLNLGEVTPTMLSLQMADRSLKTPYGIVEDV 617
           GAS+++MPL++  +L   +  P+ L+L +ADR+ + P+G++EDV
Sbjct: 616 GASVSIMPLSVARKLGFVQYKPSDLTLILADRTSRRPFGLLEDV 659


>At1g36130 hypothetical protein
          Length = 914

 Score =  197 bits (500), Expect = 2e-50
 Identities = 192/707 (27%), Positives = 290/707 (40%), Gaps = 101/707 (14%)

Query: 5   LPELENANRSLRDLTSAAMSYDYPGSIVSPDGTGN-FELRPALINLVSQNQYGGGALEDP 63
           +P      R+L D     + Y    +IV P    N +EL+P    LV Q+ + G + E P
Sbjct: 65  IPPAVERRRTLGDFNRPDLFYANRSAIVPPPLQRNDYELKPGYFALVGQHPFHGLSHEQP 124

Query: 64  HAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFT 123
             H+ERF     + +   VS D +   LFP+SL   A+ WL     GS+ +W  +   F 
Sbjct: 125 MDHIERFEDLVLSIKANGVSEDYLLCKLFPYSLAGEADSWLKQLKAGSLKTWRSIKIAFL 184

Query: 124 TRFVPRALLRKLKNDIMTFTQSTDENLYEAWERFKKLLRRCPQHNLTQAEQVAKFYDGLQ 183
             F   A   +L+N + TFTQ   E    AW RFK+  R CP H                
Sbjct: 185 NNFYDDAKSEELRNKLSTFTQGPAEAFKAAWVRFKEYQRDCPHHGF-------------- 230

Query: 184 YSSRFGLDAASSGEFDALLPQVGYELIEKMAIRAMNSSNDRQARRGVLEVEAYDQLMASN 243
             S   LDAAS+G F+   P     LIE +A   +NS+ +    R  +        MA  
Sbjct: 231 --SEMALDAASNGNFNTHYPADATTLIENLA--CINSTKNADFERKKIAGAISGNQMA-- 284

Query: 244 KQLSKQMNEIQNQMKTTKIGSRVAKVEFVTCGGPHDSEECTETRPEEEVKAMGQARNDPF 303
            +++ +M+ + N +   K       V F         EE  E  PE E         D  
Sbjct: 285 -EVNAKMDSVHNLLTGKK------HVHFAA------EEETIEPEPESEEGVFYIVGRDTG 331

Query: 304 SNTYNPGWRNHPNFSWRQGSSGQGNGFQRQFPSQGFQGQSLRQPQERGEGEGSGSKKSLE 363
           S        +H   S   G  G       + P    Q    R+   R    G+   +S  
Sbjct: 332 S------LGSHMATSVATGLQG------TRVPPTTLQSLLSRRLFLRAAFRGTMILESQT 379

Query: 364 ELVETFINRTENNYKNQEAANKNLENQFGQLAKQIAE------RPQGIFPSDCIPNPKQE 417
           +LV  F  + +  Y N      NL +   +L  Q+A+      R +G    +   NP++ 
Sbjct: 380 KLVVEFNGKFDGVYTNLNGKIDNLSSHLKKLDVQVAQTAQSIKRQEGFLLGNPDANPRKS 439

Query: 418 NASVVATRSGRVMSELKKKTEGEKR-EEIVGGEVVVPIKVREEVDLTPE---TSKIPFPK 473
             +++      V  EL  + E E    E+     +       +V + PE   T  +P+P+
Sbjct: 440 CNAILIREGDDVWEELDTEDELELAVTEMCDRHWIRTAPCEVQVPMQPEPVYTPHVPYPR 499

Query: 474 ALAKKSLDKKFSKFVDVFKKLHISIPFADALE-QMPIYAKFMKDILHKRRRLKGVDETVL 532
               K  +   +K   + +K+  ++P  DALE       +++K ++     L   DE  L
Sbjct: 500 RRRSKQ-EIHAAKCTTIMEKILYTLP-KDALETSSASLNRYVKRLVDNGISL---DEAKL 554

Query: 533 MTEECSAILQRKMPKKRR----------------------DPGSFTIPVEIEGMADVEAL 570
           +T + SAI+  K  K++                       DPGSF +   I       +L
Sbjct: 555 LTRDISAIMLPKAKKEKAHRVDIAEYIRTITPGQTTEKLPDPGSFVLDCSISTSRFSRSL 614

Query: 571 CDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVDF 630
           CDLG+SINLMP ++ ERL +    PT ++L  AD S + P GI+EDV V           
Sbjct: 615 CDLGSSINLMPKSVAERLGMTHYRPTRITLLFADCSKRIPEGILEDVPV----------- 663

Query: 631 VVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLILPVGKEKVRFSV 677
                 ++ K PLILGR FLAT  A+ DV +G + L V   ++ F +
Sbjct: 664 ------KEPKDPLILGRAFLATTGARFDVKRGRISLKVCDSEMEFGM 704


>At3g30630 hypothetical protein
          Length = 785

 Score =  177 bits (448), Expect = 2e-44
 Identities = 168/666 (25%), Positives = 287/666 (42%), Gaps = 80/666 (12%)

Query: 39  NFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRD 98
           NF+++  LI+++  N++ G  +ED   H++ F R CN  +V  VS D  +L LFPF L D
Sbjct: 38  NFKIKSGLISMIQGNKFHGLPMEDLLDHLDEFDRLCNLTKVNGVSEDGFKLRLFPFFLGD 97

Query: 99  TAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEAWERFK 158
            A  W  + P  SI +W D  + F  +F   A   +L N+I +F+Q T E+  EAWERFK
Sbjct: 98  KAHIWEKNMPHDSIITWVDCKKAFLAKFFSNAKTARLINEISSFSQKTGESFCEAWERFK 157

Query: 159 KLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYELIEKMAIRAM 218
               +CP H   +A  ++  Y G+    R  LD AS+  F     + G+ELIE +A    
Sbjct: 158 GYTNQCPHHGFKKASLLSTLYRGVLPRIRMLLDTASNENFQNKDVEEGWELIENLA---- 213

Query: 219 NSSNDRQARRGVLEVEAYDQLMASNKQLSKQMNEIQNQMKTTKIGSRVAKVEFVTCGGPH 278
             SND   +     +         +++  K +N+ Q+++    + S+   V F+      
Sbjct: 214 -QSNDNYNKDCERTIRGTTDSDDKHRKEIKALNDKQDKI----LLSQQKHVHFLV----D 264

Query: 279 DSEECTETRPEEEVKAMGQARNDPFSNTYNPGWRNHPNFSWRQGSSGQGNGFQRQFP--- 335
           D +   +     +++ +    N      YN    N+PN S+R  S+   N   + +P   
Sbjct: 265 DEQYQVQDGEGNQLEEVSYINNQSGYKGYNNFKTNNPNLSYR--STNIANPQDQVYPPQR 322

Query: 336 SQGFQGQSLRQP-------QERGEGEGSGSKKSLEE--LVETFINRTENNYKN----QEA 382
            Q   G   +QP       Q +G      + K + +  L E   +  +  Y +     EA
Sbjct: 323 QQAISGNYQQQPPPRFAPQQHQGPPAPDANMKQMAQQLLQEQASSSMDCRYNDLNAKVEA 382

Query: 383 ANKNLENQFGQLAKQIAERPQGIFPSDCIPNPKQ-ENASVVATRSGRVMSELKKKTEGEK 441
            N  +    GQ A   A +  G+ P   I N K+    + +     R +     K    +
Sbjct: 383 LNTKVRYLEGQSASTSAPKVTGL-PGKPIQNQKEYATVNAITICHDRELPTRHVKVSVVE 441

Query: 442 REEIVGGEVVVPIKVREEVDLTPETSKIPFPKALAKKSLDKKFSK-FVDVFK-------- 492
                G   ++     E+V +    +K   P  L  ++L  KF K +++ +K        
Sbjct: 442 FNHSAGSHHLIQSTSEEKVAIIERMAKRFKPTPLPSRALPWKFRKAWMERYKSVAEKQLN 501

Query: 493 KLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEECSAILQRKMPKKRRDP 552
           ++ + +P  + L  +    K +++++ +R ++    +         A  +R + +K  DP
Sbjct: 502 EIEVVMPLMEVLNVIHDPHKDVRNLILERIKMYHDSDDECDANPSRAADKRIVQEKLEDP 561

Query: 553 GSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLKTPYG 612
           GS T+P  I  +A    LCDLGAS++LMPL++         + +   L+ A         
Sbjct: 562 GSCTLPCSIGELAFSNCLCDLGASVSLMPLSVAR-------SGSAYKLRCA--------- 605

Query: 613 IVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLILPVGKE- 671
                                 ++E+ K  LIL RPFLA+  A IDV +  + L +G   
Sbjct: 606 ---------------------RLKEEHKDHLILERPFLASVGAVIDVREVKINLNLGNHI 644

Query: 672 KVRFSV 677
           K++F +
Sbjct: 645 KLQFDI 650


>At2g07480 F9A16.15
          Length = 1012

 Score =  175 bits (443), Expect = 9e-44
 Identities = 163/624 (26%), Positives = 269/624 (42%), Gaps = 121/624 (19%)

Query: 29  GSIVSPDGTGNFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIR 88
           G +  P    NF+++  LI+++  N++ G  +EDP  H++ F R C+  ++  VS ++ +
Sbjct: 23  GIVPPPIQNNNFKIKSDLISMIQGNKFHGLPMEDPLDHLDNFDRLCSLTKINGVSEESFK 82

Query: 89  LSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDE 148
           L LFPFSL D A  W  + P  SI +W+D  + F  +F   +   +L+++I  F Q   E
Sbjct: 83  LRLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKAFLAKFFSNSRKARLRSEISGFNQKNSE 142

Query: 149 NLYEAWERFKKLLRRCPQHNLTQAEQVAKFYDGLQY--SSRFGLDAASSGEFDALLPQVG 206
           +  EAWERFK    +CP H     E +   Y  L+     R  LD AS+G         G
Sbjct: 143 SFSEAWERFKGYTTQCPHH-----ESLPPQYSILRCLPKIRMLLDTASNGNILNKDVAEG 197

Query: 207 YELIEKMAIRAMNSSNDRQARRGVLEVEAYDQLMASNKQLSKQMNEIQNQMKTTKIGSRV 266
           +EL+E +A    N + D            YD+   +N+  S   ++ + ++KT  +  R+
Sbjct: 198 WELVENLAQSHRNYNED------------YDR---TNRGSSDSEDKHKKEIKT--LNDRI 240

Query: 267 AKVEFVTCGGPH--DSEECTETRPEEE--VKAMGQARNDPFSNTYNPGWRN----HPNFS 318
            K+        +    EE T+ +  E   ++ +   +N      YN G+ N    HPN S
Sbjct: 241 DKLVLAQQRNVYYITEEELTQLQDGENLTIEEVSYLQN---QGGYNKGFNNYKPPHPNLS 297

Query: 319 WRQGS-----------------------SGQGNGFQRQFPSQGFQGQSLRQ--------- 346
           +R  +                         QG   ++ F   GF  Q  +          
Sbjct: 298 YRSNNVANPQDQVYPPQNQPTQAKPFVPYNQGYNQKQNFGPPGFTQQPQQPSAQDSEMKT 357

Query: 347 -PQERGEGEGSGSKKSLEELVETFINRTENNYKNQ----EAANKNLENQFGQLAKQIAER 401
            PQ+  +G  S S    ++L E    R + +Y +     +A N  +++  G +A   A +
Sbjct: 358 LPQQLVQGHASCSMTMDKKLAE-LTTRIDCSYNDLNIKIDALNTRVKSMEGHIASTSAPK 416

Query: 402 PQGIFPSDCIPNPKQENASVVATRSGRVMSELKKKTEGEKREEIVGGEVVVPIKVREEVD 461
             G  P   + NPK E A  ++T            T   +   I  GEV+ P + R+E++
Sbjct: 417 HLGQLPGKAVQNPK-EYAHAIST----------VNTSATEDSGIQEGEVLRP-RSRQEIE 464

Query: 462 L--------------------TPETSKIPFPKALA---KKSLDKKFSKFVDVFKKLHISI 498
           L                    +P   K  FP+ +A   +    K    F+   K+L   +
Sbjct: 465 LDFFARLVERAHDPSNPIHIPSPYVPKPAFPERIAQIDEMIFQKHKMMFIKCIKELEEKV 524

Query: 499 PFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEECSAILQRK-MPKKRRDPGSFTI 557
           P  D  ++M +             R +   + V ++ ECSAI+Q+K +PKK  DPGSFT+
Sbjct: 525 PLVDTPKEMIM------------ERPQEAQQIVELSFECSAIIQKKVIPKKLGDPGSFTL 572

Query: 558 PVEIEGMADVEALCDLGASINLMP 581
           P  +  +    +LCDLGAS++  P
Sbjct: 573 PCSLAPLVFNNSLCDLGASMDEEP 596


>At4g07370
          Length = 531

 Score =  150 bits (380), Expect = 2e-36
 Identities = 108/326 (33%), Positives = 163/326 (49%), Gaps = 49/326 (15%)

Query: 381 EAANKNLENQFGQLAKQIAERPQGIFPSDCIPNPKQENASVVATRSGRVMSELKKKTEGE 440
           EA N  +    G+ A   + +  G+ P   I NPK+E    V   S     E     E +
Sbjct: 43  EALNSKVRYLEGESASTSSPKVTGL-PGKSIQNPKEERPKSVTEDSAYQDGEDFSLNEDQ 101

Query: 441 KREEIVGGEVVVPIKVREEVDLTPETSK-----------------------IPFPKALAK 477
             +     EV+ PI  R+     P TS                        +PFP    K
Sbjct: 102 VDKPT---EVLEPILDRDTRPTNPLTSSAALKLVAAKNNEIAFIPPPYKPPLPFPGRHKK 158

Query: 478 KSLDKKFSKFVDVFKKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEEC 537
           +  DK  + F    KK+ + IP ADAL  +P   KF+KD++ +R  ++ V +T +++ EC
Sbjct: 159 EVEDKYRAMFAKNIKKVELRIPLADALTHIPDSQKFLKDLIMER--IQEVQKTTVLSHEC 216

Query: 538 SAILQRK-MPKKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPT 596
           SAI+Q   + +K  DPGSFT+P  +  +   + LCDLG S+NLMPL++            
Sbjct: 217 SAIIQENDVSEKLGDPGSFTLPCSLGSLTFNKCLCDLGPSVNLMPLSV------------ 264

Query: 597 MLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAK 656
                 A RS++ P+G++ED+ + +     P DFVVL+M+E+ K PLILGRPFLAT    
Sbjct: 265 ------AKRSVRLPHGLLEDLPIKIRNVEVPTDFVVLNMDEEPKDPLILGRPFLATVGVI 318

Query: 657 IDVDKGHLILPVGKE-KVRFSVFNPM 681
           IDV +G + L +GK  +++F + + M
Sbjct: 319 IDVKQGKIDLNLGKNFEMKFDINDAM 344


>At2g10620 putative Athila retroelement ORF1 protein
          Length = 451

 Score =  149 bits (376), Expect = 5e-36
 Identities = 114/376 (30%), Positives = 194/376 (51%), Gaps = 23/376 (6%)

Query: 326 QGNGFQRQFPSQGFQ--GQSLRQPQERGEGEGSGSKKSLEEL-----VETFINRTENNYK 378
           +GN        Q  Q  G++++ P+E        S K+L  +     V      +    K
Sbjct: 52  EGNSASTSAQKQTSQLPGKAIQNPKEYAHAITLRSGKALPTIEAPKTVTVGKRPSRKTSK 111

Query: 379 NQEAANKNLENQFGQLAKQIAERPQGIFPSDCIPNPKQENASVVATRSGRVMSELKKKTE 438
           N         N  G  AK++ +R  G+  ++   +   E+ S+   ++ + + +   ++ 
Sbjct: 112 NDRGRTGRERNSKGTKAKEMGKRFGGVIVTEDSVDHDGEDFSLTKDQADKELEQPLDQSL 171

Query: 439 GEKREE-------IVGGEVVVPIKVR--EEVDLTPETSKIPFPKALAKKSLDKKFS-KFV 488
            +  +        I     V P+ V+  E+V + P     P      KK+L  K+   F 
Sbjct: 172 EQPLDHFTRPPFPITAPTAVKPVVVKNKEKVFVPPPYKPHPSFPGRHKKALAHKYRVMFA 231

Query: 489 DVFKKLHISIPFADALEQMPIYAKFMKDILHKR-RRLKGVDETVLMTEECSAILQRKM-P 546
              K++ + IP  DAL  +    KF+KD++ +R + L+G+   V++++ECSAI+Q+K+  
Sbjct: 232 KNIKEVELQIPLVDALALIMDSHKFLKDLIVERIQELQGM---VVLSDECSAIIQKKIIH 288

Query: 547 KKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRS 606
           KK  DPGSFT+P  +  +A  + LCDLGAS +LMPL++ +RL   +     +SL +ADRS
Sbjct: 289 KKLSDPGSFTLPCSLGPLAFNKCLCDLGASASLMPLSVTKRLGFTQYKSCNISLILADRS 348

Query: 607 LKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLIL 666
           ++ P+  +E++ + +     P DFVVL+M+E+ K  LILGRPFL T  A I + KG + L
Sbjct: 349 VRIPHDFLENIPIRIRAVEIPTDFVVLEMDEEPKDHLILGRPFLTTVGAMIYIKKGKINL 408

Query: 667 PVGKE-KVRFSVFNPM 681
            +GK+ ++ F V + M
Sbjct: 409 NLGKDFRMTFDVKDTM 424


>At1g41690 hypothetical protein
          Length = 371

 Score =  148 bits (373), Expect = 1e-35
 Identities = 100/311 (32%), Positives = 156/311 (50%), Gaps = 20/311 (6%)

Query: 29  GSIVSPDGTGNFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIR 88
           G +  P    NFE++ +LI +V  N++ G  +EDP  H++ F R C+  ++  VS D  +
Sbjct: 28  GIVPPPVQNNNFEIKSSLIAMVQGNKFHGLPMEDPLDHLDEFERLCSLTKINGVSEDGFK 87

Query: 89  LSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDE 148
           L LFPFSL D A  W  + PQGSIT+W+D  + F  +F   +   +L+N+I  FTQ   E
Sbjct: 88  LRLFPFSLGDKAHLWEKTLPQGSITTWDDCKKAFLAKFFSYSRTARLRNEISGFTQKQSE 147

Query: 149 NLYEAWERFKKLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYE 208
           +  EAWERFK    +CP H   QA  ++  Y G+    R  LD AS+G F     + G+E
Sbjct: 148 SFCEAWERFKGYQTKCPHHGFKQASLLSTLYRGVLPKIRMLLDTASNGNFLKKDVEEGWE 207

Query: 209 LIEKMAIRAMNSSNDRQARRGVLEVEAYDQLMASNKQLSKQMNEI-QNQMKTTKIGSRVA 267
           L+EK A ++  + N+   R      ++ D+     K L+ ++++I Q Q K         
Sbjct: 208 LVEKFA-QSDGNYNEDYDRSIRTSSDSDDKHRRDMKALNDKLDKILQVQQK--------- 257

Query: 268 KVEFVTCGGPHDSEECTETRPEEEVKAMGQARND-PFSNTYNPGWRNHPNFSWRQGSSGQ 326
            V  ++   P   +E      E +  A    +N   +   YN  +R +PN S+R  S+  
Sbjct: 258 HVHLISEDEPFQVQE-----GENDQCAYSYVQNQGGYDKGYN-NYRPNPNLSYR--STNI 309

Query: 327 GNGFQRQFPSQ 337
            N   + +P Q
Sbjct: 310 ANPHDQVYPQQ 320


>At4g07600
          Length = 630

 Score =  142 bits (359), Expect = 5e-34
 Identities = 86/237 (36%), Positives = 143/237 (60%), Gaps = 6/237 (2%)

Query: 487 FVDVFKKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEECSAILQRKM- 545
           F    K++ + IP  DAL  +    KF+KD++ +R  ++ V   V+++ ECSAI+Q+K+ 
Sbjct: 2   FAKNIKEVELRIPLVDALALILDTHKFLKDLIVER--IQEVQGMVVLSHECSAIIQKKIV 59

Query: 546 PKKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADR 605
           PKK  DPGSFT+P  +  +A    LCDLGA ++ MPL++ +RL   +     +SL +ADR
Sbjct: 60  PKKLSDPGSFTLPCFLGTVAFNRCLCDLGALVSPMPLSIAKRLGFTQYKSCNISLILADR 119

Query: 606 SLKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLI 665
           S++  +G+++++ + +       DFV+L+M+E+ K PLIL RPFLAT  A IDV KG + 
Sbjct: 120 SVRISHGLLKNLPIRIGAAEISTDFVILEMDEEPKDPLILRRPFLATAGAMIDVKKGKID 179

Query: 666 LPVGKE-KVRFSVFNPMIETNHDNDFVCDVIRSRSKVSEETPKVNSQIDEFHPALIK 721
           L +GK+ ++ F + + M + N +       I    ++++E  +  +Q D  + AL K
Sbjct: 180 LNLGKDFRMTFDIKDAMKKPNIEGQLFW--IEEMDQLADELLEELAQEDHLNSALTK 234


>At3g31500 hypothetical protein
          Length = 591

 Score =  141 bits (356), Expect = 1e-33
 Identities = 134/523 (25%), Positives = 234/523 (44%), Gaps = 56/523 (10%)

Query: 190 LDAASSGEFDALLPQVGYELIEKMAIRAMNSS--NDRQARRGVLEVEAYDQLMASNKQLS 247
           LD AS+GEF         +LIE +A    N +   DR  R G  E + + +L A  +QL 
Sbjct: 3   LDTASNGEFMTKTETEATKLIENLAGSNSNHNVDYDRSNRGGGGESKQFAELSAKVEQLM 62

Query: 248 KQMNEIQNQMKTTKIGSRVAKVEFVTCGGPHDSEECTETRPEEEVKAMGQARNDPFSNTY 307
           ++  +  N  + +  G  +   EF   G      E         V   G  +N   +N  
Sbjct: 63  RRDQKSVNFCEDSSKG--MVHQEFSGDGSEDLQAEINF------VNGYGNYQNGGSTNVE 114

Query: 308 NPGWRNHPNFSWRQGSSGQGNGFQRQFPSQGFQGQSLRQPQERGEGEGSGS--------- 358
           NP  + +P  +  QG   Q  GFQ +     +QGQ  + P   G     G          
Sbjct: 115 NPQDQVYPTQAGSQGQKFQPYGFQNK---GNYQGQ-FQPPAGTGHASSFGDNEMKLMMQQ 170

Query: 359 -----KKSLEEL---VETFINRTENNYKNQEAANKNLENQFGQLAKQIAERPQGIFPSDC 410
                KK+  ++   V++  N     +    +  K LENQ  Q+    + RP G      
Sbjct: 171 VLEDQKKNAADINVKVDSMYNDLNGKFATLSSHVKTLENQVSQIVSA-SMRPDGTHSGKV 229

Query: 411 IPNPKQENASVVATRSGRVMSELKKKTEGEKRE-EIVGGEVVVPIKVREE-----VDLTP 464
            P  K++  +++      +  EL++    ++ E  +V  E +V  K+ E+     V+  P
Sbjct: 230 KPKGKEQCYAIM------IQEELREIVVAKQVETNVVVVETLVEDKIVEDDEPLSVEPPP 283

Query: 465 ETSKIPFPKALAKKSLDKKFSKFVDVFKKLHISIPFADALEQMPIYAKFMKDILHKRRRL 524
              K+PFP    +    K++++F ++ K+L++ +PF   +  +P Y  ++K IL  +R +
Sbjct: 284 YVPKLPFPGRERQIQRQKEYARFDEIMKQLYVRLPFLQLVLHVPSYRSYLKYILSNKRSI 343

Query: 525 KGVDETVLMTEECSAILQRKMPKKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTM 584
           +   + +   EE + +++ +  +K       T  VE+    ++   C       + P T+
Sbjct: 344 EEGVKLISKGEEHAQLVESQRQQKE---AQLTNVVEMLAGKEMVNTCSA-----IPPATI 395

Query: 585 FERLNLGEVTPTMLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLI 644
            ++L +    P+ +SL +ADRS++ P G+ E+V   V  +  P +FVVL+++++   PL 
Sbjct: 396 PKKLGITNFKPSRISLILADRSVQFPMGLAENVHARVGNFYIPTNFVVLELDKEPHDPLN 455

Query: 645 LGRPFLATGRAKIDVDKGHLILPVGKEKVRFSV----FNPMIE 683
           LGRPFL T  A IDV +  + L +G   + F +     NP IE
Sbjct: 456 LGRPFLNTVEAIIDVRRSTINLQIGDYALEFDIKGTRKNPTIE 498


>At1g38440 hypothetical protein
          Length = 263

 Score =  130 bits (327), Expect = 3e-30
 Identities = 86/273 (31%), Positives = 136/273 (49%), Gaps = 14/273 (5%)

Query: 49  LVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRDTAEEWLNSQP 108
           ++ +N++ G  +EDP  H++ F R  N  ++  VS D  +L LFPFSL D A  W  + P
Sbjct: 1   MIQENKFHGLPMEDPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLP 60

Query: 109 QGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEAWERFKKLLRRCPQHN 168
             SIT+W+D  + F ++F   A   +L+N+I  F+Q T E+  EAWERFK    +CP H 
Sbjct: 61  HDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTSESFCEAWERFKGYTNQCPHHG 120

Query: 169 LTQAEQVAKFYDGLQYSSRFGLDAASSGEFDALLPQVGYELIEKMAIRAMNSSND-RQAR 227
            T+A  ++  Y G+       LDAAS+G F     + G+EL+E +A    N + D  +  
Sbjct: 121 FTKASLLSTLYRGVLPCIIMLLDAASNGNFQNKDVEEGWELVENLAQSYGNYNEDCDRTV 180

Query: 228 RGVLEVEAYDQLMASNKQLSKQMNEIQNQMKTTKIGSRVAKVEFVTCGGPHDSEECTETR 287
           RG  +         SN +  K++  + +++    + S+   V F+        ++  E  
Sbjct: 181 RGTAD---------SNDKHRKEIKALNDKLDRIFL-SQQKHVHFLVDDKQFQVQD-GEGN 229

Query: 288 PEEEVKAMGQARNDPFSNTYNPGWRNHPNFSWR 320
             EEV  +    N      YN    N+PN S+R
Sbjct: 230 QLEEVSYIN--NNQGGYKGYNNFKTNNPNLSYR 260


>At2g14040 putative retroelement pol polyprotein
          Length = 841

 Score =  127 bits (319), Expect = 2e-29
 Identities = 81/238 (34%), Positives = 115/238 (48%), Gaps = 51/238 (21%)

Query: 432 ELKKKTEGEKREEIVGGEVVVPIKVREEVDLTPETSKIPFPKALAKKSLDKKFSKFVDVF 491
           +L+K+T  EK ++ V               L P   K+PFP    K   +K++S F ++ 
Sbjct: 2   KLRKQTLEEKAKKTV---------------LPPYVPKLPFPGRQRKIQREKEYSLFDEIM 46

Query: 492 KKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEECSAILQRKMPKKRRD 551
           ++L    P                                    ECSAILQ  +P KR D
Sbjct: 47  RQLQRYSP------------------------------------ECSAILQNVIPVKRED 70

Query: 552 PGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLKTPY 611
           PGSF +P  I        LCDLGA ++LMP ++ +RL     TPT +SL + DRS+  P 
Sbjct: 71  PGSFVLPSRIGEYTFDRCLCDLGAGVSLMPFSVAKRLGDTNFTPTKMSLVLGDRSISFPV 130

Query: 612 GIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLATGRAKIDVDKGHLILPVG 669
           G+ EDV V V  +  P DFV+++++E+ +  LILGRPFL    A IDV K  + L +G
Sbjct: 131 GVAEDVQVRVGNFYIPTDFVIIELDEEPRHRLILGRPFLNIVAALIDVRKSKINLRIG 188


>At3g31340 Athila ORF 1, putative
          Length = 781

 Score =  125 bits (314), Expect = 8e-29
 Identities = 76/247 (30%), Positives = 124/247 (49%), Gaps = 2/247 (0%)

Query: 11  ANRSLRDLTSAAMSYDYPGSIVSPDGTGNFELRPALINLVSQNQYGGGALEDPHAHMERF 70
           A ++LRD  +  + +    +   P    +FE++  L+ LV QNQ+   + E+   H++ F
Sbjct: 58  ARQTLRDHDAPNIDFFRDRNQHLPINRNDFEIKTGLLALVKQNQFFVHSSENHVYHLDNF 117

Query: 71  IRNCNTYRVQNVSTDTIRLSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRA 130
              C   R+  V  D I+  LF FSL D A  WL S    ++ SWED    F  ++  ++
Sbjct: 118 EDICRITRMNGVPDDIIKCRLFIFSLADNAHRWLKSLDPINLRSWEDYKAAFLGQYFTQS 177

Query: 131 LLRKLKNDIMTFTQSTDENLYEAWERFKKLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGL 190
               L+N I +F Q   E+  EAWERFK   R CP H  ++A  ++ FY G+  + +  L
Sbjct: 178 RTAILRNKISSFQQGGTESFPEAWERFKDYYRECPHHGFSRATLISTFYQGVDKAYKMAL 237

Query: 191 DAASSGEFDALLPQVGYELIEKMAIRAMNSS--NDRQARRGVLEVEAYDQLMASNKQLSK 248
           D AS+G+F         +LI+ +A   +N +   DR  R G  E++   +L    +QL +
Sbjct: 238 DTASNGDFMTKTETEATKLIKNLAASNINHNVDYDRSNRGGGGELKQLAELSVKVEQLLR 297

Query: 249 QMNEIQN 255
           +  ++ N
Sbjct: 298 RDQKVIN 304



 Score =  122 bits (306), Expect = 7e-28
 Identities = 68/155 (43%), Positives = 93/155 (59%), Gaps = 4/155 (2%)

Query: 533 MTEECSAILQRKMPKKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGE 592
           M   CSAI    +P+K  DPGSF +P  I   A    LCDLGA +NLMPL+M +RL +  
Sbjct: 516 MVSTCSAIPPATIPEKLGDPGSFVLPCRIGKSAFERCLCDLGAGVNLMPLSMSKRLGITN 575

Query: 593 VTPTMLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFLAT 652
             P+ +SL +ADRS++ P G+ E+V V V  +  P DFVVL+++++   PL LGRPFL T
Sbjct: 576 FKPSRISLILADRSVRFPVGLAENVHVRVGDFYIPTDFVVLELDKEPHDPLTLGRPFLNT 635

Query: 653 GRAKIDVDKGHLILPVGKEKVRFSV----FNPMIE 683
             A IDV +  + L +G   + F +     NP IE
Sbjct: 636 VGAIIDVRRSTINLQIGDFALEFDMKGTRKNPTIE 670


>At2g13260 putative Athila retroelement ORF1 protein
          Length = 622

 Score =  123 bits (308), Expect = 4e-28
 Identities = 63/170 (37%), Positives = 96/170 (56%), Gaps = 9/170 (5%)

Query: 34  PDGTGNFELRPALINLVSQNQYGGGALEDPHAHMERFIRNCNTYRVQNVSTDTIRLSLFP 93
           P    NFE++ +LIN+V  +++ G ++EDP  H+E+F   C+T ++  +S D  +L LFP
Sbjct: 51  PVENNNFEIKSSLINMVQTSKFHGLSMEDPLDHLEQFDMLCSTVKINGISEDAFKLRLFP 110

Query: 94  FSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQSTDENLYEA 153
           FSL D A  W  + PQ SITSW+     F ++F       +L+N+I +FTQ ++E+  EA
Sbjct: 111 FSLGDRARIWEKNLPQRSITSWDQCKRAFLSKFFSTTRTARLRNEISSFTQRSNESFCEA 170

Query: 154 WERFKKLLRRCPQH---------NLTQAEQVAKFYDGLQYSSRFGLDAAS 194
           WERFK    +CP H         NL Q++  A     L+   R  +D A+
Sbjct: 171 WERFKGYKMQCPHHGFSKESILKNLAQSDTNALLRQILEGQGRGAIDLAT 220



 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 86/357 (24%), Positives = 138/357 (38%), Gaps = 81/357 (22%)

Query: 303 FSNTYNPGWRNH-PNFSWRQGSS-----GQGNGFQRQFPSQGFQGQSLRQPQERG----- 351
           FS T     RN   +F+ R   S      +  G++ Q P  GF  +S+ +   +      
Sbjct: 144 FSTTRTARLRNEISSFTQRSNESFCEAWERFKGYKMQCPHHGFSKESILKNLAQSDTNAL 203

Query: 352 -----EGEGSGSKKSLEELVETFINRTENNYKNQEAANKNLENQFGQLAKQIAERPQGIF 406
                EG+G G+   L   ++    + +N Y    A  + L       +   ++ P G  
Sbjct: 204 LRQILEGQGRGAI-DLATQMKGMHTKVDNIYGELNAKIERLNVHVYSPSSSTSKHPMGTL 262

Query: 407 PSDCIPNPKQ-------------ENASVVATRS-GRV------MSELKKKTEGEKREEIV 446
           P     N K+             EN S   +R  GR+      + E+ K   G   E +V
Sbjct: 263 PGKSETNHKEFCNAIFINDFDVVENMSYTQSREDGRIDENEKAIEEISKLLYGSNVENLV 322

Query: 447 ------------GGEVV---VPIKVREEVDLTPETSKIPFPKALAKKSLDKKFSKFVDVF 491
                       G +VV   V      +V+  P    +PFP  +  K+  K FS F    
Sbjct: 323 VASDEKAKKSTNGNDVVTKSVEKNAASKVESPPYEPPLPFPGRVLTKAKKKVFSSFKSNM 382

Query: 492 KKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTEECSAILQRKMPKKRRD 551
            ++   +P  + L Q+P++ +F++ IL  R +L+                         D
Sbjct: 383 SRVGAPLPCVENLSQVPLHFQFIQAILENREKLE-------------------------D 417

Query: 552 PGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLK 608
           PG FTIP  +  +   +ALCD GAS+N+M L MF     G +T   +  +   +SLK
Sbjct: 418 PGKFTIPCSLGDLQLDDALCDSGASVNVMSLAMF----CGTITNEEVKTKKEPKSLK 470


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.316    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,606,474
Number of Sequences: 26719
Number of extensions: 752009
Number of successful extensions: 2434
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2287
Number of HSP's gapped (non-prelim): 123
length of query: 728
length of database: 11,318,596
effective HSP length: 107
effective length of query: 621
effective length of database: 8,459,663
effective search space: 5253450723
effective search space used: 5253450723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)