BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0381.3
(253 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 238 2e-63
At2g31080 putative non-LTR retroelement reverse transcriptase 238 3e-63
At4g15590 reverse transcriptase like protein 210 7e-55
At2g07730 putative non-LTR retroelement reverse transcriptase 197 4e-51
At2g17610 putative non-LTR retroelement reverse transcriptase 186 1e-47
At4g10830 putative protein 181 3e-46
At2g01840 putative non-LTR retroelement reverse transcriptase 180 7e-46
At2g31520 putative non-LTR retroelement reverse transcriptase 175 2e-44
At2g25550 putative non-LTR retroelement reverse transcriptase 175 2e-44
At3g45550 putative protein 174 3e-44
At1g47910 reverse transcriptase, putative 174 5e-44
At2g07650 putative non-LTR retrolelement reverse transcriptase 169 1e-42
At2g11240 pseudogene 165 2e-41
At4g09710 RNA-directed DNA polymerase -like protein 160 5e-40
At2g45230 putative non-LTR retroelement reverse transcriptase 160 5e-40
At2g17910 putative non-LTR retroelement reverse transcriptase 158 3e-39
At2g41580 putative non-LTR retroelement reverse transcriptase 157 5e-39
At1g24640 hypothetical protein 155 2e-38
At2g05200 putative non-LTR retroelement reverse transcriptase 154 4e-38
At2g16680 putative non-LTR retroelement reverse transcriptase 152 2e-37
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 238 bits (607), Expect = 2e-63
Identities = 116/248 (46%), Positives = 168/248 (66%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI++ QEV+H++ +K +G + +K+DLEKAYDR+ WD L TL G P V IM
Sbjct: 1088 DNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMK 1147
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
V+ P + +LWN K +F P RGLRQGDPLSPYLFVLC+ERL I++ + WKP++
Sbjct: 1148 CVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIK 1207
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
I++ G +SH+ FADD++LF +AS +Q++++ L++FC ASG KV+L+KS++ FSK V
Sbjct: 1208 ISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVL 1267
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
+S +G+ DLGKYLG+P+L+ R+ K F +I + SSRL WK +L+ AG
Sbjct: 1268 RDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAG 1327
Query: 246 RVCLAKSV 253
R+ L K+V
Sbjct: 1328 RLTLTKAV 1335
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 238 bits (606), Expect = 3e-63
Identities = 116/248 (46%), Positives = 165/248 (65%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI+L QE +H++ +K +G + +K+DLEKAYDRV WDFL+ TL G IM
Sbjct: 412 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMA 471
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
GV P +S+LWN + SF P RGLRQGDPLSPYLFVLC+ERL I+ V + WKP+
Sbjct: 472 GVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIA 531
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
++ G +SH+ FADD++LF +AS Q++++ L+ FCEASG KV+L+KS++ FS V
Sbjct: 532 VSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVS 591
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
+ +S +GI +LGKYLG+P+L+ R+ K F ++ ++S+RL WK L+ AG
Sbjct: 592 REMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAG 651
Query: 246 RVCLAKSV 253
R+ L K+V
Sbjct: 652 RITLTKAV 659
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 210 bits (534), Expect = 7e-55
Identities = 108/248 (43%), Positives = 157/248 (62%), Gaps = 17/248 (6%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI++ QE +H++ +K +G + +K+DLEKAYDR+ WDFL TL G + IM
Sbjct: 364 DNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIME 423
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
V P++S+LWN K SF P+RGLRQGDP+SPYLFVLC+ERL QI+ V +G WK +
Sbjct: 424 CVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSIS 483
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
I++ G +SH+ FADD++LF +AS Q KV+L+KS++ FS V
Sbjct: 484 ISQGGPKVSHVCFADDLILFAEASVAQ-----------------KVSLEKSKIFFSNNVS 526
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
+ ++ GI +LGKYLG+P+L+ R+ K F ++ ++SSRL+ WK+ L+ AG
Sbjct: 527 RDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAG 586
Query: 246 RVCLAKSV 253
R+ L K+V
Sbjct: 587 RITLTKAV 594
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 197 bits (501), Expect = 4e-51
Identities = 104/248 (41%), Positives = 149/248 (59%), Gaps = 18/248 (7%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI+L QE +H++ +K +G + +K+DLEKAYDR+ W+FL+ TL G IM
Sbjct: 262 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHRIMA 321
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
GV P +S+LWN K SF P RGLRQGDPLSPYLFVLC+ERL I+ V WKP+
Sbjct: 322 GVTDPSMSVLWNGGKTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGTWDWKPMA 381
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
++ C+AS Q+ ++ L++FCEASG V+L+KS+++FS V
Sbjct: 382 LS------------------CEASVAQILIIRRVLEQFCEASGQNVSLEKSKIVFSNNVS 423
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
+ +S +GI +LGKYLG+P+L+ R+ K ++ +SS L WK+ L+ A
Sbjct: 424 RDMERLISGESGIGCTRELGKYLGMPILQKRMNKETSGEVLEHVSSSLAGWKSRSLSLAW 483
Query: 246 RVCLAKSV 253
R+ L K+V
Sbjct: 484 RITLTKAV 491
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 186 bits (471), Expect = 1e-47
Identities = 95/248 (38%), Positives = 146/248 (58%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI++A E++H++HT+K + VA K+D+ KA+D++ W F+ A + GF + + IM
Sbjct: 4 DNILIAHELIHSLHTKKLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMT 63
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
+ SIL N + P+RG+RQGDP+SPYL++LC E L+ IQ + +
Sbjct: 64 CITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFK 123
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
+++G ISHL FA D L+FC+A+ E+ + N LK + +ASG VN KS +LF K +D
Sbjct: 124 ASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLD 183
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
R LS + GI + G+YLG+P GR F+ + M ++ +W N LL+ AG
Sbjct: 184 FRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAG 243
Query: 246 RVCLAKSV 253
+ L KS+
Sbjct: 244 KEVLIKSI 251
>At4g10830 putative protein
Length = 1294
Score = 181 bits (459), Expect = 3e-46
Identities = 99/249 (39%), Positives = 143/249 (56%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A E+MH++ T+K+ + +A+K D+ KAYDRV W+FL T+ FGF + IM
Sbjct: 910 DNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIM 969
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N + PQRG+RQGDPLSPYLF+LC + L I+N V +G + +
Sbjct: 970 GAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGI 1029
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI G++HL FADD L FCQ++ Q + + + SG K+N+ KS + F V
Sbjct: 1030 RIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRV 1089
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L +I GI GKYLG+P GR + F +I ++ R +SW L+ A
Sbjct: 1090 HGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPA 1149
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 1150 GKEIMLKSV 1158
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 180 bits (456), Expect = 7e-46
Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A E++H++ ++++ + G VA+K D+ KAYDRV W+FL + GF PR V IM
Sbjct: 910 DNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIM 969
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
V +L N S P RG+RQGDPLSPYLF+ C E L+ ++ +
Sbjct: 970 TCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGM 1029
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
+ITKD + ISHL FADD L FC+AS + ++ + K++ EASG K+N KS ++F + +
Sbjct: 1030 KITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKI 1089
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
R+ L + GI GKYLG+P GR F ++ K+ R W N L+ A
Sbjct: 1090 PTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPA 1149
Query: 245 GRVCLAKSV 253
G+ + K++
Sbjct: 1150 GKEIVIKAI 1158
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 175 bits (443), Expect = 2e-44
Identities = 99/249 (39%), Positives = 137/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A EVMH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 704 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 763
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N S P RG+RQGDPLSPYLF+LC + L+ I + G + V
Sbjct: 764 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 823
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 824 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 883
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L I I GKYLG+P GR K F +I ++ R ++W L+ A
Sbjct: 884 YGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 943
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 944 GKEIMLKSV 952
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 175 bits (443), Expect = 2e-44
Identities = 99/249 (39%), Positives = 137/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A EVMH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 930 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 989
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N S P RG+RQGDPLSPYLF+LC + L+ I + G + V
Sbjct: 990 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 1049
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 1050 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 1109
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L I I GKYLG+P GR K F +I ++ R ++W L+ A
Sbjct: 1110 YGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 1169
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 1170 GKEIMLKSV 1178
>At3g45550 putative protein
Length = 851
Score = 174 bits (442), Expect = 3e-44
Identities = 99/249 (39%), Positives = 138/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++A E+MH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 169 DNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIM 228
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK S+L N S +P RG+RQGDPLSPYLF+LC + L+ I+ + G + V
Sbjct: 229 AAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGV 288
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 289 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRV 348
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
Q L + I GKYLG+P GR K F +I ++ R SW L+ A
Sbjct: 349 YGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPA 408
Query: 245 GRVCLAKSV 253
G+ L KSV
Sbjct: 409 GKEILLKSV 417
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 174 bits (440), Expect = 5e-44
Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKKGRG-LVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++AQE+ H + T + +AIK D+ KAYD+V W+F+ A L GF + + IM
Sbjct: 332 DNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIM 391
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
W + + +L N P+RGLRQGDPLSPYLF+LC E L I+ Q +
Sbjct: 392 WCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGI 451
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
++ +SHL FADD L FC+A+KEQ ++ LK++ SG ++N KS + F V
Sbjct: 452 KVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKV 511
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
+ + ++ I GI +G YLG+P G F+ + ++ SR+ W L++
Sbjct: 512 EDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKG 571
Query: 245 GRVCLAKSV 253
G+ + KSV
Sbjct: 572 GKEVMIKSV 580
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 169 bits (428), Expect = 1e-42
Identities = 88/248 (35%), Positives = 141/248 (56%), Gaps = 35/248 (14%)
Query: 6 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 65
DNI++ QE +H++ +K +G + +K+DLEKAYDR+ W+FL TL P + + IM
Sbjct: 109 DNIVIMQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWEFLEDTLRAVRLPEKWIVWIMQ 168
Query: 66 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 125
V P +S+LWN ++ + + WKP+
Sbjct: 169 CVTEPSMSLLWN-----------------------------------EHSIARKDWKPIS 193
Query: 126 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 185
+++ G +SH+ FADD++LF +AS Q++++ L+ FC ASG KV+L+KS++ FS+ V
Sbjct: 194 LSQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVS 253
Query: 186 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 245
+S +GIS +LGKYLG+P+L+ R+ K F ++ K+++RL WK L+ AG
Sbjct: 254 RDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAG 313
Query: 246 RVCLAKSV 253
RV L K+V
Sbjct: 314 RVTLTKAV 321
>At2g11240 pseudogene
Length = 1044
Score = 165 bits (418), Expect = 2e-41
Identities = 84/252 (33%), Positives = 139/252 (54%), Gaps = 1/252 (0%)
Query: 3 ATRDNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVD 61
A+ DN+++ E +H + + + R +A+K ++ KAYDR+ WDF++ + + GF +
Sbjct: 371 ASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWIS 430
Query: 62 LIMWGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTW 121
I+ + S L N S + P+RGLRQGDPLSP+LF++C E L+ + G+
Sbjct: 431 WILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSL 490
Query: 122 KPVRITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFS 181
+R++K ++HL FADD + FC++ + + LK++ EASG +N KS + FS
Sbjct: 491 LGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFS 550
Query: 182 KAVDHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLL 241
+ + I GI LGKYLG+P + GR + F ++ ++ R SW + L
Sbjct: 551 RKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFL 610
Query: 242 NRAGRVCLAKSV 253
+ AG+ + KSV
Sbjct: 611 STAGKTTMLKSV 622
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 160 bits (406), Expect = 5e-40
Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 5/254 (1%)
Query: 3 ATRDNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVD 61
A DN+++ E++H + K +AIK D+ KAYDR+ W+FL+ L GF + +
Sbjct: 486 AIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIR 545
Query: 62 LIMWGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTW 121
+M V S L N S S P RGLRQGDPLSPYLF+LC E L+ + +G
Sbjct: 546 WVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVM 605
Query: 122 KPVRITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFS 181
+R+ + ++HL FADD + FC+ + ++N LK++ ASG +NL KS + FS
Sbjct: 606 VGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFS 665
Query: 182 KAV--DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNN 239
D +R++ LS I +GKYLG+P GR + F+S++ ++ R SW
Sbjct: 666 SKTPQDIKRRVKLS--LRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIR 723
Query: 240 LLNRAGRVCLAKSV 253
L+ AG+ L K+V
Sbjct: 724 FLSSAGKQILLKAV 737
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 160 bits (406), Expect = 5e-40
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++A E++H + + K +AIK D+ KAYDRV W FL + GF + LIM
Sbjct: 548 DNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIM 607
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
VK + +L N + P RGLRQGDPLSPYLFV+C E L +Q+ + +
Sbjct: 608 ECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGL 667
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
++ + ISHL FADD + +C+ + E L + ++E+ ASG +VN KS + F K +
Sbjct: 668 KVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHI 727
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
R+ + GI R G YLG+P A + L ++ ++ W++N L+
Sbjct: 728 SEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPG 787
Query: 245 GRVCLAKSV 253
G+ L K+V
Sbjct: 788 GKEILLKAV 796
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 158 bits (399), Expect = 3e-39
Identities = 90/249 (36%), Positives = 134/249 (53%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++A E++H++ T + + +A K D+ KAYDRV W FL + GF + + IM
Sbjct: 526 DNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIM 585
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
V S+L N P RG+RQGDPLSP LFVLC E L + G +
Sbjct: 586 NCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGI 645
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
+ V ++HL FADD LL C+A+K++ + + L ++ + SG +NL+KS + F K V
Sbjct: 646 QFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNV 705
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
D + + + +GIS GKYLG+P + F + K+ SRLT W L++
Sbjct: 706 DIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQG 765
Query: 245 GRVCLAKSV 253
G+ L KS+
Sbjct: 766 GKEVLLKSI 774
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 157 bits (397), Expect = 5e-39
Identities = 91/257 (35%), Positives = 134/257 (51%), Gaps = 4/257 (1%)
Query: 1 FLATR---DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFP 56
F+A R DNIILA E++H + T +K + + K D+ KAYDRV W FL+ L GF
Sbjct: 269 FVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFN 328
Query: 57 PRIVDLIMWGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLV 116
++ +M V S+L N P RGLRQGDPLSP+LFVLC E L +
Sbjct: 329 STWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAE 388
Query: 117 TQGTWKPVRITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKS 176
G ++ G ++HL FADD LL C+AS+ + + + L ++ SG +N +KS
Sbjct: 389 KIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKS 448
Query: 177 RMLFSKAVDHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSW 236
+ F V+ + + + +GI GKYLG+P + F + K+ SRL+ W
Sbjct: 449 AITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGW 508
Query: 237 KNNLLNRAGRVCLAKSV 253
L++ G+ L KS+
Sbjct: 509 YAKTLSQGGKDILLKSI 525
>At1g24640 hypothetical protein
Length = 1270
Score = 155 bits (392), Expect = 2e-38
Identities = 90/251 (35%), Positives = 137/251 (53%), Gaps = 5/251 (1%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++A E++H++ + +A+K D+ KAYDRV W +LR+ L GF + V+ IM
Sbjct: 511 DNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIM 570
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
V S+L N QRGLRQGDPLSP+LFVLC E L + +G + +
Sbjct: 571 VCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGI 630
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
+ +++G + HL FADD L C+AS+EQ ++ LK + A+G +NL+KS + F + V
Sbjct: 631 QFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKV 690
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIP--LLKGRVTKAHFASLIGKMSSRLTSWKNNLLN 242
D + + + GI G YLG+P +V H+ L ++ +L W L+
Sbjct: 691 DEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHY--LKDRLKEKLDVWFTRCLS 748
Query: 243 RAGRVCLAKSV 253
+ G+ L KSV
Sbjct: 749 QGGKEVLLKSV 759
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 154 bits (389), Expect = 4e-38
Identities = 87/249 (34%), Positives = 131/249 (51%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQK-KGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DN+++ EV+H + T K +A+K D+ KAYDRV WDFL+ L FGF +D ++
Sbjct: 443 DNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVL 502
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
V S L N + P RGLRQGDPLSP LF+LC E L+ V
Sbjct: 503 ECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGV 562
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
R++ +G ++HL FADD + F ++ E ++ L + +ASG +N KS + FS
Sbjct: 563 RVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKT 622
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
+ + I I + GKYLG+P GR + F ++I K+ + SW + L++A
Sbjct: 623 PRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQA 682
Query: 245 GRVCLAKSV 253
G+ + K+V
Sbjct: 683 GKQVMLKAV 691
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 152 bits (383), Expect = 2e-37
Identities = 83/249 (33%), Positives = 129/249 (51%), Gaps = 1/249 (0%)
Query: 6 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 64
DNI++A E++H++ T K + + K D+ KAYDRV W FL+ L GF + + IM
Sbjct: 500 DNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWIM 559
Query: 65 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 124
V S+L N P+RG+RQGDP+SP+LFVLC E L +Q +
Sbjct: 560 GCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSGI 619
Query: 125 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 184
+ G ++HL F DD L C+A+K + + L ++ SG +N++KS + F V
Sbjct: 620 QFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVKV 679
Query: 185 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 244
D + + + +GI GKYLG+P + F + K+ S L+ W + L++
Sbjct: 680 DEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLSQG 739
Query: 245 GRVCLAKSV 253
G+ L KS+
Sbjct: 740 GKEILLKSI 748
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,426,219
Number of Sequences: 26719
Number of extensions: 219445
Number of successful extensions: 704
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 72
length of query: 253
length of database: 11,318,596
effective HSP length: 97
effective length of query: 156
effective length of database: 8,726,853
effective search space: 1361389068
effective search space used: 1361389068
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0381.3