BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0378b.9
(768 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02960 putative polyprotein of LTR transposon 630 e-180
At1g59265 polyprotein, putative 627 e-180
At1g58889 polyprotein, putative 625 e-179
At4g27210 putative protein 612 e-175
At1g44510 polyprotein, putative 605 e-173
At1g53810 594 e-170
At4g10690 retrotransposon like protein 592 e-169
At1g31210 putative reverse transcriptase 588 e-168
At2g23330 putative retroelement pol polyprotein 531 e-151
At2g20460 putative retroelement pol polyprotein 529 e-150
At2g16000 putative retroelement pol polyprotein 525 e-149
At1g70010 hypothetical protein 514 e-146
At2g16670 putative retroelement pol polyprotein 501 e-142
At1g57640 498 e-141
At4g16870 retrotransposon like protein 491 e-139
At4g27200 putative protein 478 e-135
At4g07810 putative polyprotein 455 e-128
At4g14460 retrovirus-related like polyprotein 454 e-128
At3g60170 putative protein 441 e-124
At4g10990 putative retrotransposon polyprotein 429 e-120
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 630 bits (1624), Expect = e-180
Identities = 356/869 (40%), Positives = 496/869 (56%), Gaps = 106/869 (12%)
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
+L+Q GI H + P+ + NG E KHRHI E GL LL+HA +P T+W AF A YLIN
Sbjct: 582 YLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLIN 641
Query: 62 QLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
+LP P L L +P QKL+ + P+Y LK FGC CYP RPYN HKL +S C F+GYS
Sbjct: 642 RLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLT 701
Query: 122 HKGYNCL-TTEGKVIITRNVLFDETVFPF----------QFQTSKSSSDILLDSSLPTTS 170
Y CL G++ +R+V FDE FPF Q Q S S+ + ++LPTT
Sbjct: 702 QSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTP 761
Query: 171 VI----------------------PL---------LPISNAS----------------PN 183
++ PL LP S+ S P
Sbjct: 762 LVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPT 821
Query: 184 VMPH----ANSVMPTV-----------ATNGSAPVVQTTVSDFSQPA*DSGVVH----AS 224
PH +NS P + + N ++P+ Q+ +S P + + +S
Sbjct: 822 AQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSS 881
Query: 225 AQPTEPPVPP--------------SSNVHSMTTRAKTGIHRPK---AYAASTALSSVPTS 267
+ + PP+PP N HSM TRAK GI +P +YA S A +S P +
Sbjct: 882 SSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSEPRT 941
Query: 268 AK*ALSIPHWHQAMQEEYQALMNNNTWELV-PLLHGRDAIGCKWVFRTKYNSDGSINKHK 326
A A+ W QAM E A + N+TW+LV P +GC+W+F K+NSDGS+N++K
Sbjct: 942 AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYK 1001
Query: 327 PRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEE 386
RLVAKG++Q G DY ETFSPV+K T+IR VL +A+ WPIRQ D NNAFL G L +E
Sbjct: 1002 ARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDE 1061
Query: 387 VFMQQPPGF-SKGSSHLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCK 445
V+M QPPGF K VC+L+KA+YGLKQAPRAW+ +L + L GF + DTSLF
Sbjct: 1062 VYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVL 1121
Query: 446 FTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGG 505
+Y+LVYVDDI+ITG+ + + + L+ F +K+ LHYFLGIEA G
Sbjct: 1122 QRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQ-G 1180
Query: 506 LILSQTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTI 565
L LSQ +Y DLL + M + P TPM + KL+ +SG P P YR +VG+L Y+
Sbjct: 1181 LHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAF 1240
Query: 566 TRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDW 625
TRP++++ +N++ Q+MH P + HW A+KR+LRYL GT HG++L++ +++S+ A++D+DW
Sbjct: 1241 TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1300
Query: 626 GSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSE 685
D DD ST+G +Y+G + +SW++KKQ V RSSTEAEYRS+A +E+ W+ SLL+E
Sbjct: 1301 AGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTE 1360
Query: 686 LRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQ 745
L + S +IYCDN+ +L ANP+ H++ KH ALD HF+R +V + VV++ Q
Sbjct: 1361 LGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQ 1420
Query: 746 VSSTL--------FHCFKTKLRVLVKLTP 766
++ TL F F K+ V +K+ P
Sbjct: 1421 LADTLTKPLSRVAFQNFSRKIGV-IKVPP 1448
>At1g59265 polyprotein, putative
Length = 1466
Score = 627 bits (1617), Expect = e-180
Identities = 360/841 (42%), Positives = 478/841 (56%), Gaps = 93/841 (11%)
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
+ +Q GI H + P+ + NG E KHRHI ETGL LL+HA +P T+W AF A YLIN
Sbjct: 603 YFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLIN 662
Query: 62 QLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
+LP P L L +P QKL+ P+Y L+ FGC CYP RPYN HKL +S C FLGYS
Sbjct: 663 RLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLT 722
Query: 122 HKGYNCLTTE-GKVIITRNVLFDETVFPF----------QFQTSKSSSDILLDSSLPT-T 169
Y CL + ++ I+R+V FDE FPF Q Q +SS ++LPT T
Sbjct: 723 QSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRT 782
Query: 170 SVIPLLPISN----ASPNVMPHA---------------------NSVMPTVAT-NGSAPV 203
V+P S+ A+P P A +S PT NG P
Sbjct: 783 PVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPT 842
Query: 204 VQTTV---------------------------------SDFSQPA*DSGVVHASAQPTEP 230
Q T S S P+ + +S PT P
Sbjct: 843 TQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPP 902
Query: 231 -----PVPPSS-----------NVHSMTTRAKTGIHRPK---AYAASTALSSVPTSAK*A 271
P PP + N HSM TRAK GI +P + A S A S P +A A
Sbjct: 903 SILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQA 962
Query: 272 LSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAI-GCKWVFRTKYNSDGSINKHKPRLV 330
L W AM E A + N+TW+LVP I GC+W+F KYNSDGS+N++K RLV
Sbjct: 963 LKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLV 1022
Query: 331 AKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQ 390
AKG++Q G DY ETFSPV+K T+IR VL +A+ WPIRQ D NNAFL G L ++V+M
Sbjct: 1023 AKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMS 1082
Query: 391 QPPGF-SKGSSHLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKS 449
QPPGF K + VCKL+KALYGLKQAPRAW+ +L + L GF + DTSLF
Sbjct: 1083 QPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGK 1142
Query: 450 ETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILS 509
+Y+LVYVDDI+ITG+ T + + + +L+ F +KD LHYFLGIEA G L LS
Sbjct: 1143 SIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLS 1201
Query: 510 QTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPE 569
Q +YI DLL + M + P TPM KLS SG P YR +VG+L Y+ TRP+
Sbjct: 1202 QRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPD 1261
Query: 570 IAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDP 629
I++ +N++ QFMH P E H QA+KRILRYL GT HG++L++ +++S+ A++D+DW D
Sbjct: 1262 ISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDK 1321
Query: 630 DDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVP 689
DD ST+G +Y+G + +SW++KKQ V RSSTEAEYRS+A +E+ W+ SLL+EL +
Sbjct: 1322 DDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIR 1381
Query: 690 TSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQVSST 749
+ +IYCDN+ +L ANP+ H++ KH A+D HF+R +V + VV++ Q++ T
Sbjct: 1382 LTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADT 1441
Query: 750 L 750
L
Sbjct: 1442 L 1442
>At1g58889 polyprotein, putative
Length = 1466
Score = 625 bits (1613), Expect = e-179
Identities = 359/841 (42%), Positives = 477/841 (56%), Gaps = 93/841 (11%)
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
+ +Q GI H + P+ + NG E KHRHI ETGL LL+HA +P T+W AF A YLIN
Sbjct: 603 YFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLIN 662
Query: 62 QLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
+LP P L L +P QKL+ P+Y L+ FGC CYP RPYN HKL +S C FLGYS
Sbjct: 663 RLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLT 722
Query: 122 HKGYNCLTTE-GKVIITRNVLFDETVFPF----------QFQTSKSSSDILLDSSLPT-T 169
Y CL + ++ I+R+V FDE FPF Q Q +SS ++LPT T
Sbjct: 723 QSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRT 782
Query: 170 SVIPLLPISN----ASPNVMPHA---------------------NSVMPTVAT-NGSAPV 203
V+P S+ A+P P A +S PT NG P
Sbjct: 783 PVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPT 842
Query: 204 VQTTV---------------------------------SDFSQPA*DSGVVHASAQPTEP 230
Q T S S P+ + +S PT P
Sbjct: 843 TQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPP 902
Query: 231 -----PVPPSS-----------NVHSMTTRAKTGIHRPK---AYAASTALSSVPTSAK*A 271
P PP + N HSM TRAK GI +P + A S A S P +A A
Sbjct: 903 SILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQA 962
Query: 272 LSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAI-GCKWVFRTKYNSDGSINKHKPRLV 330
L W AM E A + N+TW+LVP I GC+W+F KYNSDGS+N++K R V
Sbjct: 963 LKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFV 1022
Query: 331 AKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQ 390
AKG++Q G DY ETFSPV+K T+IR VL +A+ WPIRQ D NNAFL G L ++V+M
Sbjct: 1023 AKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMS 1082
Query: 391 QPPGF-SKGSSHLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKS 449
QPPGF K + VCKL+KALYGLKQAPRAW+ +L + L GF + DTSLF
Sbjct: 1083 QPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGK 1142
Query: 450 ETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILS 509
+Y+LVYVDDI+ITG+ T + + + +L+ F +KD LHYFLGIEA G L LS
Sbjct: 1143 SIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLS 1201
Query: 510 QTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPE 569
Q +YI DLL + M + P TPM KLS SG P YR +VG+L Y+ TRP+
Sbjct: 1202 QRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPD 1261
Query: 570 IAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDP 629
I++ +N++ QFMH P E H QA+KRILRYL GT HG++L++ +++S+ A++D+DW D
Sbjct: 1262 ISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDK 1321
Query: 630 DDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVP 689
DD ST+G +Y+G + +SW++KKQ V RSSTEAEYRS+A +E+ W+ SLL+EL +
Sbjct: 1322 DDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIR 1381
Query: 690 TSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQVSST 749
+ +IYCDN+ +L ANP+ H++ KH A+D HF+R +V + VV++ Q++ T
Sbjct: 1382 LTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADT 1441
Query: 750 L 750
L
Sbjct: 1442 L 1442
>At4g27210 putative protein
Length = 1318
Score = 612 bits (1578), Expect = e-175
Identities = 347/789 (43%), Positives = 460/789 (57%), Gaps = 54/789 (6%)
Query: 7 GIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQLPIP 66
GIQ +L+CP+ QQNG E KHRH+ E GL++L +H+P FW +AF TA +LIN LP
Sbjct: 414 GIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLFQSHVPHKFWVEAFFTANFLINLLPTS 473
Query: 67 TLDLS-TPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHKGY 125
L S +P +KLYDKKPDY+ L+ FG C+P R Y +K S C FLGY+ +KGY
Sbjct: 474 ALKESISPYEKLYDKKPDYTSLRSFGSACFPTLRDYAENKFNPCSLKCVFLGYNEKYKGY 533
Query: 126 NCL-TTEGKVIITRNVLFDETVFPFQF----------------------------QTSKS 156
CL G++ I+R+V+FDE+V+PF TS S
Sbjct: 534 RCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPS 593
Query: 157 SSDILLDSS----LP--TTSVIP-LLPISNASPNVMPHANSV----MPTVATNGSAPVVQ 205
S L S+ LP T ++P L+PIS+ S HA+++ P + +
Sbjct: 594 SRSPLFTSADFPPLPQRKTPLLPTLVPISSVS-----HASNITTQQSPDFDSERTTDFDS 648
Query: 206 TTVSD---FSQPA*DSGVVHASAQPTEPPVPPSSNVHSMTTRAKTGIHRPK---AYAAST 259
++ D SQ DS A S+NVH M TRAK GI +P + +
Sbjct: 649 ASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPMVTRAKVGISKPNPRYVFLSHK 708
Query: 260 ALSSVPTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYNSD 319
P + AL P W AM EE TW LVP +G KWVFRTK ++D
Sbjct: 709 VSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHAD 768
Query: 320 GSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFL 379
G++NK K R+VAKGF Q EG DY ET+SPVV+ T+R VL LA W I+Q D NAFL
Sbjct: 769 GTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFL 828
Query: 380 NGELVEEVFMQQPPGFSKGSS-HLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKC 438
+G+L E V+M QP GF S VC L K++YGLKQ+PRAWFDK S+ L FGF +K
Sbjct: 829 HGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKS 888
Query: 439 DTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEA 498
D SLF + + +L+YVDD++ITG+SS + SL+A LN F + D+G LHYFLGI+
Sbjct: 889 DPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQ- 947
Query: 499 THTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVG 558
+ GL +SQ KY DLLI A M+ P PTP+ L + LF P +RS+ G
Sbjct: 948 VQRQQNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAG 1007
Query: 559 ALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSIT 618
L Y+T+TRP+I F +N VCQ MH P + +KRILRY+ GT T G+ R S +
Sbjct: 1008 KLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQ 1067
Query: 619 AFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMW 678
A++DSDWG+ RRS G+C ++G NLVSW++KK V+RSSTEAEY+SL+ +EI+W
Sbjct: 1068 AYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILW 1127
Query: 679 LRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTVV 738
L +LL ELR+P + ++CDNLS V+L ANP H +TKHF +D HFVRERVA K + V
Sbjct: 1128 LSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVK 1187
Query: 739 NIPAPSQVS 747
+IP Q++
Sbjct: 1188 HIPGSEQIA 1196
>At1g44510 polyprotein, putative
Length = 1459
Score = 605 bits (1561), Expect = e-173
Identities = 344/830 (41%), Positives = 461/830 (55%), Gaps = 84/830 (10%)
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
FL GI H + P+ + NG E KHRHI ETGL LL A +P +W AF TA YLIN
Sbjct: 609 FLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWTYAFATAVYLIN 668
Query: 62 QLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
++P P L L +P QKL+ P+Y L+ FGCLC+P RPY +KL RS C FLGYS
Sbjct: 669 RMPTPVLCLQSPFQKLFGSSPNYQRLRVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLT 728
Query: 122 HKGYNCLTTEGKVIIT-RNVLFDETVFPF------QFQTS------KSSSDILLDSSLPT 168
Y CL + + T R+V+FDE+ +PF Q Q+S SSS +S P
Sbjct: 729 QTAYLCLDVDNNRLYTSRHVMFDESTYPFAASIREQSQSSLVTPPESSSSSSPANSGFPC 788
Query: 169 T---------------------------------------------SVIPLLPISNASPN 183
+ ++ P +SN+ P
Sbjct: 789 SVLRLQSPPASSPETPSPPQQQNDSPVSPRQTGSPTPSHHSQVRDSTLSPSPSVSNSEPT 848
Query: 184 VMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGV----VHASAQPTEPP-------- 231
PH N P +N ++P + + + S + V S PP
Sbjct: 849 A-PHENGPEPEAQSNPNSPFIGPLPNPNPETNPSSSIEQRPVDKSTTTALPPNQTTIAAT 907
Query: 232 -----VPPSSNVHSMTTRAKTGIHRPKAYAAST-ALS----SVPTSAK*ALSIPHWHQAM 281
PP +N H M TR+K I +PK + T AL+ S P + AL W AM
Sbjct: 908 SNSRSQPPKNN-HQMKTRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDKKWRFAM 966
Query: 282 QEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYD 341
+E+ A N+TW+LVP + +GC+WVF+ KY +G I+K+K RLVAKGF+Q G D
Sbjct: 967 SDEFDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVD 1026
Query: 342 YNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGF-SKGSS 400
Y ETFSPV+K TTIR VL +A+ WP++Q D NNAFL G L EEV+M QPPGF K
Sbjct: 1027 YAETFSPVIKATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRP 1086
Query: 401 HLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDD 460
VC+L+KA+YGLKQAPRAW+ +L L GF + DTSLF + LY+LVYVDD
Sbjct: 1087 SHVCRLRKAIYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDD 1146
Query: 461 IIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIK 520
II+TGS ++ ++++ L F +KD LHYFLGIEAT T G L L Q KY+ DLL K
Sbjct: 1147 IIVTGSDHKSVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTG-LHLMQRKYMTDLLAK 1205
Query: 521 AKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQF 580
M P TP+ + KL+ + G YRSVVG+L Y+ TRP+IAF +N++ QF
Sbjct: 1206 HNMLDAKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQF 1265
Query: 581 MHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCI 640
MH P HWQA KR+LRYL GT THG++L S + + AF+D+DW D D ST+ I
Sbjct: 1266 MHQPTSDHWQAAKRVLRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVI 1325
Query: 641 YIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDN 700
Y+G N +SW++KKQ V+RSSTE+EYR++A +EI WL SLL+EL + I+CDN
Sbjct: 1326 YLGRNPISWSSKKQRGVSRSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTIFCDN 1385
Query: 701 LSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQVSSTL 750
+ ++ ANP+ H++ KH ALD HFVR + + + V ++ Q++ L
Sbjct: 1386 IGATYICANPVFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADAL 1435
>At1g53810
Length = 1522
Score = 594 bits (1531), Expect = e-170
Identities = 338/829 (40%), Positives = 476/829 (56%), Gaps = 68/829 (8%)
Query: 7 GIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQLPIP 66
GIQ ++CPY QQNG E KHRHI E GL+++ + +PL +W ++F TA ++IN LP
Sbjct: 603 GIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLLPTS 662
Query: 67 TLDLS-TPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHKGY 125
+LD + +P QKLY K P+YS L+ FGC CYP R Y + K RS C FLGY+ +KGY
Sbjct: 663 SLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYKGY 722
Query: 126 NCL-TTEGKVIITRNVLFDETVFPFQ------------------FQTSKSSSDILLDSSL 166
CL G++ I+R+V+FDE PF+ F++ + D S
Sbjct: 723 RCLYPPTGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSR 782
Query: 167 --------PTTSVIPLLPIS----NASPNVMPHANSVMPTVATNGSAPVVQTTV------ 208
P T+ + P S A PN + T++ +P T +
Sbjct: 783 YPVSSIPQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVSGSPERTTGLDSASIG 842
Query: 209 -------SDFSQPA*DSGVVHASAQ-------PTEPPVPPSSNVHSMTTRAKTGIHRP-K 253
+D S P+ +S Q P + P +N H+M TR K GI +P K
Sbjct: 843 DSYHSPTADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEHAMVTRGKEGISKPNK 902
Query: 254 AYAASTALSSVPT--SAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWV 311
Y T S+P + AL P W+ AMQEE TW LVP + +G WV
Sbjct: 903 RYVLLTHKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGSMWV 962
Query: 312 FRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQ 371
FRTK ++DGS++K K RLVAKGF Q EG DY ET+SPVV+ T+R +L +A + +W ++Q
Sbjct: 963 FRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQ 1022
Query: 372 FDFNNAFLNGELVEEVFMQQPPGF-SKGSSHLVCKLKKALYGLKQAPRAWFDKLSSTLAR 430
D NAFL+G+L E V+M+QP GF K VC L K+LYGLKQ+PRAWFD+ S+ L
Sbjct: 1023 MDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLE 1082
Query: 431 FGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSL 490
FGF + D SLF + ++ + +L+YVDD++ITG++S ++ L+A LN F +KD+G +
Sbjct: 1083 FGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQV 1142
Query: 491 HYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKP 550
HYFLGI+ T DGGL +SQ KY DLLI A M + +P PTP+ L +N +F P
Sbjct: 1143 HYFLGIQI-QTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRVSNQDEVFSDP 1201
Query: 551 LLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLR 610
+RS+ G L Y+T+TRP+I F +N VCQ MH P + +KRILRY+ GT + G+
Sbjct: 1202 TYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYN 1261
Query: 611 RPSSM---------SITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSS 661
SS ++A++DSD+ + + RRS G C ++G N++SW++KKQ V+RSS
Sbjct: 1262 SNSSSVVSAYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSS 1321
Query: 662 TEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFAL 721
TEAEYRSL+ +EI W+ S+L E+ V + ++CDNLS V+L ANP H +TKHF +
Sbjct: 1322 TEAEYRSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPAFHARTKHFDV 1381
Query: 722 DLHFVRERVADKQVTVVNIPAPSQVSS--TLFHCFKTKLRVLVKLTPEF 768
D H++RERVA K + V +IP Q++ T F+ R+ KL +F
Sbjct: 1382 DHHYIRERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGVDF 1430
>At4g10690 retrotransposon like protein
Length = 1515
Score = 592 bits (1527), Expect = e-169
Identities = 337/808 (41%), Positives = 474/808 (57%), Gaps = 66/808 (8%)
Query: 3 LTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQ 62
L CGI+ ++CP+ QQNG E +HR++TE GL+L+ H+ +P W +AF T+ +L N
Sbjct: 596 LASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHSKVPHKLWVEAFFTSNFLSNL 655
Query: 63 LPIPTL-DLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
LP TL D +P + L+ P Y+ L+ FG CYP+ RPY +K +S C FLGY+
Sbjct: 656 LPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPYAKNKFDPKSLLCVFLGYNNK 715
Query: 122 HKGYNCL-TTEGKVIITRNVLFDETVFPF-----QFQT----------SKSSSDILLDSS 165
+KGY CL GKV I R+VLFDE FP+ QFQT K S L
Sbjct: 716 YKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQTISGSPLFTAWQKGFSSTALSRE 775
Query: 166 LPTTSV----IPLLPISNA-----SPNVMPHANS------------VMPTVATNGSAPVV 204
P+T+V P +S++ +PN+ A + V P+ T+ S P
Sbjct: 776 TPSTNVEDIIFPSATVSSSVPTGCAPNIAETATAPDVDVAAAHDMVVPPSPITSTSLPTQ 835
Query: 205 -QTTVSDFSQPA*DSGVVHASAQPTEP---------PVPPSSNV-----------HSMTT 243
+ + SD + + DS +SA + PP +V H M T
Sbjct: 836 PEESTSDQNHYSTDSETAISSAMTPQSINVSLFEDSDFPPLQSVISSTTAAPETSHPMIT 895
Query: 244 RAKTGIHRPKAYAASTALSS---VPTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLL 300
RAK+GI +P A ++ S P S K AL W AM EE + +TW+LVP
Sbjct: 896 RAKSGITKPNPKYALFSVKSNYPEPKSVKEALKDEGWTNAMGEEMGTMHETDTWDLVPPE 955
Query: 301 HGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLS 360
+GCKWVF+TK NSDGS+++ K RLVA+G+ Q EG DY ET+SPVV+ T+R++L
Sbjct: 956 MVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSILH 1015
Query: 361 LALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFSKGSS-HLVCKLKKALYGLKQAPRA 419
+A +++W ++Q D NAFL+ EL E VFM QPPGF S VCKLKKA+Y LKQAPRA
Sbjct: 1016 VATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFEDPSRPDYVCKLKKAIYDLKQAPRA 1075
Query: 420 WFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLN 479
WFDK SS L ++GF + D SLF + +++L+YVDD+I+TG++ + L+ L+
Sbjct: 1076 WFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILS 1135
Query: 480 AVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLKL 539
F +KD+G+LHYFLGI+A H + GL LSQ KY +DLL+ A M + PTP+ L L
Sbjct: 1136 TEFRMKDMGALHYFLGIQA-HYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQ--LDL 1192
Query: 540 SANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYL 599
+ FP+P +R + G L Y+T+TRP+I F +N VCQ MH+P + +KRIL YL
Sbjct: 1193 LQGNNKPFPEPTYFRRLAGKLQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYL 1252
Query: 600 HGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVAR 659
GT T G+ L + + ++DSDW D RRST G C ++G N++SW+AK+ V++
Sbjct: 1253 KGTMTMGINLSSNTDSVLRCYSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSK 1312
Query: 660 SSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHF 719
SSTEAEYR+L+ +E+ W+ LL E+ +P +YCDNLS V+L ANP LH+++KHF
Sbjct: 1313 SSTEAEYRTLSFAASEVSWIGFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHF 1372
Query: 720 ALDLHFVRERVADKQVTVVNIPAPSQVS 747
+D ++VRERVA +TV +IPA Q++
Sbjct: 1373 QVDYYYVRERVALGALTVKHIPASQQLA 1400
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 588 bits (1517), Expect = e-168
Identities = 327/754 (43%), Positives = 450/754 (59%), Gaps = 17/754 (2%)
Query: 3 LTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQ 62
L++ GI HR++CPY QQNG E KHRH+ E GL++L H+H P FW ++F TA Y+IN+
Sbjct: 595 LSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINR 654
Query: 63 LPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMH 122
LP L +P + L+ +KPDYS L+ FG CYP RP +K RS C FLGY+ +
Sbjct: 655 LPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQY 714
Query: 123 KGYNCL-TTEGKVIITRNVLFDETVFPFQFQTSKSSSDILLDSSLPTTSVIPLLPISNAS 181
KGY C GKV I+RNV+F+E+ PF+ + ++ S P IS S
Sbjct: 715 KGYRCFYPPTGKVYISRNVIFNESELPFK----EKYQSLVPQYSTPLLQAWQHNKISEIS 770
Query: 182 PNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGV---VHASAQPTEPPVPPSSNV 238
P P + V ++D + + G V+ A+ N
Sbjct: 771 VPAAPVQLFSKPIDLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQEQVINS 830
Query: 239 HSMTTRAKTGIHRPKA-YAASTALSSV--PTSAK*ALSIPHWHQAMQEEYQALMNNNTWE 295
H+MTTR+K GI +P YA T+ + P + A+ P W++A+ EE + +TW
Sbjct: 831 HAMTTRSKAGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWS 890
Query: 296 LVPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTI 355
LVP + + KWVF+TK + DGSI+K K RLVAKGF Q EG DY ETFSPVV+ TI
Sbjct: 891 LVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATI 950
Query: 356 RTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGF--SKGSSHLVCKLKKALYGL 413
R VL ++ WPI+Q D +NAFL+GEL E VFM QP GF + +H VC+L KA+YGL
Sbjct: 951 RLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTH-VCRLTKAIYGL 1009
Query: 414 KQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFS 473
KQAPRAWFD S+ L +GF +K D SLF + LY+L+YVDDI++TGS + +
Sbjct: 1010 KQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLED 1069
Query: 474 LIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPM 533
L+ L F +KDLG YFLGI+ +G L L QT Y D+L +A M NP PTP+
Sbjct: 1070 LLQALKNRFSMKDLGPPRYFLGIQIEDYANG-LFLHQTAYATDILQQAGMSDCNPMPTPL 1128
Query: 534 TSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVK 593
+L + LF +P +RS+ G L Y+TITRP+I F +N +CQ MHSP + +K
Sbjct: 1129 PQ--QLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLK 1186
Query: 594 RILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKK 653
RILRY+ GT GL ++R S+++++A++DSD + RRST+G CI +G NL+SW+AK+
Sbjct: 1187 RILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKR 1246
Query: 654 QTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILH 713
Q V+ SSTEAEYR+L EI W+ LL +L +P + +YCDNLS V+L ANP LH
Sbjct: 1247 QPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALH 1306
Query: 714 TKTKHFALDLHFVRERVADKQVTVVNIPAPSQVS 747
++KHF D H++RE+VA + +I A Q++
Sbjct: 1307 NRSKHFDTDYHYIREQVALGLIETQHISATFQLA 1340
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 531 bits (1368), Expect = e-151
Identities = 307/842 (36%), Positives = 444/842 (52%), Gaps = 98/842 (11%)
Query: 1 PFLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLI 60
P+ GI H+ +C QQNGRVE KHRHI A L ++P+ FWG++ TA +LI
Sbjct: 636 PYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLPVKFWGESILTATHLI 695
Query: 61 NQLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSP 120
N+ P L TP + L+ ++P Y L+ FGCLCY H RP N K RS C F+GY
Sbjct: 696 NRTPSAVLKGKTPYELLFGERPSYDMLRSFGCLCYAHIRPRNKDKFTSRSRKCVFIGYPH 755
Query: 121 MHKGYNCLTTE-GKVIITRNVLF--------------------------DETVFPFQFQT 153
K + E GK+ +R+V F D+ P Q
Sbjct: 756 GKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTPPMVNDDWFLPISTQV 815
Query: 154 SKSSSDILLDSSLPTTSVIPLLPIS-----NASPNVMPHA-NSVMPTVATNGSAPVVQTT 207
++ D SS + I P S + S N +P S++P+ + + S + +
Sbjct: 816 DSTNVDSSSSSSPAQSGSIDQPPRSIDQSPSTSTNPVPEEIGSIVPSSSPSRS---IDRS 872
Query: 208 VSDFSQPA*DSGVVHA---SAQPTEPPVPPS------------------SNVHSMTTRAK 246
SD S A D+ + + S+ P+ P +P +N S A
Sbjct: 873 TSDLS--ASDTTELLSTGESSTPSSPGLPELLGKGCREKKKSVLLKDFVTNTTSKKKTAS 930
Query: 247 TGIHRPK--------------------------------------AYAASTALSSVPTSA 268
IH P A+ A+ S+ P
Sbjct: 931 HNIHSPSQVLPSGLPTSLSADSVSGKTLYPLSDFLTNSGYSANHIAFMAAILDSNEPKHF 990
Query: 269 K*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYNSDGSINKHKPR 328
K A+ I W +AM +E AL N+TW++ L HG+ AI KWV++ KYNSDG++ +HK R
Sbjct: 991 KDAILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKAR 1050
Query: 329 LVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVF 388
LV G HQ EG D+ ETF+PV K TT+RT+L++A W + Q D +NAFL+G+L EEV+
Sbjct: 1051 LVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVY 1110
Query: 389 MQQPPGFSKGSSHLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTK 448
M+ PPGF VC+L+K+LYGLKQAPR WF KLS+ L GF + D SLF
Sbjct: 1111 MRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNG 1170
Query: 449 SETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLIL 508
+++LVYVDD+I+ G++ AI + L+ F +KDLG L YFLG+E + D G L
Sbjct: 1171 DTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPD-GFCL 1229
Query: 509 SQTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRP 568
SQ KY D++ + + PS P+ KL++ +G +F P YR +VG Y+TITRP
Sbjct: 1230 SQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRP 1289
Query: 569 EIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSD 628
++++ ++ + QFM +PL HW+A R++RYL G+ G++LR SS+ I A+ DSD+ +
Sbjct: 1290 DLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNAC 1349
Query: 629 PDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRV 688
P RRS S +Y+G + +SW KKQ V+ SS EAEYR++A + E+ WL++LL +L V
Sbjct: 1350 PLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGV 1409
Query: 689 PTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQVSS 748
S ++CD+ + +H+ ANP+ H +TKH D H VR+ V DK +T +I QV+
Sbjct: 1410 HHSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVAD 1469
Query: 749 TL 750
L
Sbjct: 1470 LL 1471
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 529 bits (1363), Expect = e-150
Identities = 295/752 (39%), Positives = 431/752 (57%), Gaps = 33/752 (4%)
Query: 7 GIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQLPIP 66
GI +CP +QN VE KH+HI AL+ ++M L +WGD TA +LIN+ P
Sbjct: 709 GIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSA 768
Query: 67 TLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHKGYN 126
L TP + L K PDYS LK FGCLCY T HK RS C FLGY KGY
Sbjct: 769 LLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYK 828
Query: 127 CLTTEGKVI-ITRNVLFDETVFPFQF--QTSKSSSDILLDSSLPTTSVIPLLPISNASPN 183
L E V+ I+RNV F E +FP Q++ ++SD+ P+ P+S+ +
Sbjct: 829 LLDLESNVVHISRNVEFHEELFPLASSQQSATTASDVFT----------PMDPLSSGNS- 877
Query: 184 VMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGVVHASAQPTEPPVPPSSNVHSMTT 243
S +P+ + S + + ++ F D + + P SS +S +
Sbjct: 878 ----ITSHLPSPQISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHPI--SSSLSYSQIS 931
Query: 244 RAKTGIHRPKAYAASTALSSVPTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGR 303
+ Y + + +P S A W A+ +E A+ +TWE+ L G+
Sbjct: 932 PSHM------LYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGK 985
Query: 304 DAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLAL 363
A+GCKWVF K+++DGS+ + K R+VAKG+ Q EG DY ETFSPV K T++ +L ++
Sbjct: 986 KAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSA 1045
Query: 364 MHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFS--KGSS---HLVCKLKKALYGLKQAPR 418
+W + Q D +NAFLNG+L E ++M+ P G++ KG+S ++VC+LKK++YGLKQA R
Sbjct: 1046 SKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASR 1105
Query: 419 AWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADL 478
WF K S++L GF+ D +LF + SE + +LVYVDDI+I ++ A SL L
Sbjct: 1106 QWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEAL 1165
Query: 479 NAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLK 538
A F L++LG L YFLG+E T +G + LSQ KY +LL A M PS PMT ++
Sbjct: 1166 KASFKLRELGPLKYFLGLEVARTSEG-ISLSQRKYALELLTSADMLDCKPSSIPMTPNIR 1224
Query: 539 LSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRY 598
LS N G L +YR +VG L Y+TITRP+I F +NK+CQF +P H AV ++L+Y
Sbjct: 1225 LSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQY 1284
Query: 599 LHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVA 658
+ GT GL+ +++ + D+DWG+ PD RRST+G +++G +L+SW +KKQ V+
Sbjct: 1285 IKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVS 1344
Query: 659 RSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKH 718
RSS EAEYR+LAL E+ WL +LL LRV S ++Y D+ + V++ NP+ H +TKH
Sbjct: 1345 RSSAEAEYRALALASCEMAWLSTLLLALRV-HSGVPILYSDSTAAVYIATNPVFHERTKH 1403
Query: 719 FALDLHFVRERVADKQVTVVNIPAPSQVSSTL 750
+D H VRE++ + Q+ ++++ QV+ L
Sbjct: 1404 IEIDCHTVREKLDNGQLKLLHVKTKDQVADIL 1435
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 525 bits (1351), Expect = e-149
Identities = 294/774 (37%), Positives = 426/774 (54%), Gaps = 33/774 (4%)
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
F + GI +CP +QN VE KH+HI AL+ + +PL+ WGD TA +LIN
Sbjct: 693 FYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLIN 752
Query: 62 QLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
+ P L TP + L P Y L+ FGCLCY T P HK RS C FLGY
Sbjct: 753 RTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSG 812
Query: 122 HKGYNCLTTEGK-VIITRNVLFDETVFPFQFQTSKSSSDILLDSSLPTTSVIPLLPISNA 180
+KGY + E V I+RNV F E VFP SS L +P +S I + +
Sbjct: 813 YKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGI--ISDTTH 870
Query: 181 SPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGVVHASAQPTEPPVPPSSNVHS 240
SP+ +P S +P ++ ++D+ H + ++ P SS +
Sbjct: 871 SPSSLPSQISDLPPQISSQRVRKPPAHLNDY----------HCNTMQSDHKYPISSTISY 920
Query: 241 MTTRAKTGIHRPKAYAASTALSSVPTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLL 300
Y + +PT+ A W +A+ E A+ NTWE+ L
Sbjct: 921 SKISPSH-----MCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLP 975
Query: 301 HGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLS 360
G+ A+GCKWVF K+ +DG++ ++K RLVAKG+ Q EG DY +TFSPV K TTI+ +L
Sbjct: 976 KGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLK 1035
Query: 361 LALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFSKGS-----SHLVCKLKKALYGLKQ 415
++ +W ++Q D +NAFLNGEL EE+FM+ P G+++ S++V +LK+++YGLKQ
Sbjct: 1036 VSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQ 1095
Query: 416 APRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLI 475
A R WF K SS+L GF+ D +LF K E + +LVYVDDI+I +S A L
Sbjct: 1096 ASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLT 1155
Query: 476 ADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTS 535
+L+ F L+DLG L YFLG+E T G+ + Q KY +LL M + P PM
Sbjct: 1156 EELDQRFKLRDLGDLKYFLGLEVARTT-AGISICQRKYALELLQSTGMLACKPVSVPMIP 1214
Query: 536 GLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRI 595
LK+ + G L YR +VG L Y+TITRP+I F +NK+CQF +P H A R+
Sbjct: 1215 NLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRV 1274
Query: 596 LRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQT 655
L+Y+ GT GL+ S +++ FADSDW S D RRST+ +++G +L+SW +KKQ
Sbjct: 1275 LQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQH 1334
Query: 656 VVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTK 715
V+RSS EAEYR+LAL E++WL +LL L+ + P ++Y D+ + +++ NP+ H +
Sbjct: 1335 TVSRSSAEAEYRALALATCEMVWLFTLLVSLQA-SPPVPILYSDSTAAIYIATNPVFHER 1393
Query: 716 TKHFALDLHFVRERVADKQVTVVNIPAPSQVSSTL--------FHCFKTKLRVL 761
TKH LD H VRER+ + ++ ++++ QV+ L F K+K+ +L
Sbjct: 1394 TKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSIL 1447
>At1g70010 hypothetical protein
Length = 1315
Score = 514 bits (1323), Expect = e-146
Identities = 289/760 (38%), Positives = 428/760 (56%), Gaps = 38/760 (5%)
Query: 7 GIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQLPIP 66
GI +CP QQN VE KH+HI +L +H+P+++WGD TA YLIN+LP P
Sbjct: 547 GIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAP 606
Query: 67 TLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHKGYN 126
L+ P + L P Y +K FGCLCY T P + HK + R+ C F+GY KGY
Sbjct: 607 ILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYK 666
Query: 127 CLTTEG-KVIITRNVLFDETVFPFQFQTSKSSSDILLDSSLPTTSVIPLLPI-------- 177
L E +I++R+V+F E +FPF SD+ + + P P+
Sbjct: 667 LLDLETHSIIVSRHVVFHEELFPFL------GSDLSQEEQNFFPDLNPTPPMQRQSSDHV 720
Query: 178 ----SNASPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*-DSGVVHASAQPTEPPV 232
S++S ++P AN PT N P VQT+ +PA H+ T +
Sbjct: 721 NPSDSSSSVEILPSAN---PT--NNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEI 775
Query: 233 PPSSNVHSMTTRAKTGIHRPKAYAASTALSSVPTSAK*ALSIPHWHQAMQEEYQALMNNN 292
+ + T + A + P++ A + W AM E+ L +
Sbjct: 776 RKFLSYDRINDPYLT-------FLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTH 828
Query: 293 TWELVPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKP 352
TWE+ L + IGC+W+F+ KYNSDGS+ ++K RLVA+G+ Q EG DYNETFSPV K
Sbjct: 829 TWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKL 888
Query: 353 TTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFS--KGSS---HLVCKLK 407
+++ +L +A + + Q D +NAFLNG+L EE++M+ P G++ +G S + VC+LK
Sbjct: 889 NSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLK 948
Query: 408 KALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSS 467
K+LYGLKQA R W+ K SSTL GF + CD + F K + L +LVY+DDIII ++
Sbjct: 949 KSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNN 1008
Query: 468 STAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSIN 527
A+ L + + + F L+DLG L YFLG+E + D G+ +SQ KY DLL +
Sbjct: 1009 DAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRS-DKGIHISQRKYALDLLDETGQLGCK 1067
Query: 528 PSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEP 587
PS PM + + +SG F + YR ++G L Y+ ITRP+I F +NK+ QF +P +
Sbjct: 1068 PSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKA 1127
Query: 588 HWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLV 647
H QAV +IL+Y+ GT GL+ S + + +A++D+ S D RRSTSG C+++G +L+
Sbjct: 1128 HLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLI 1187
Query: 648 SWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLV 707
W ++KQ VV++SS EAEYRSL++ E++WL + L EL+VP S +L++CDN + +H+
Sbjct: 1188 CWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIA 1247
Query: 708 ANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQVS 747
N + H +TKH D H VRER+ + +I Q++
Sbjct: 1248 NNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIA 1287
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 501 bits (1289), Expect = e-142
Identities = 293/810 (36%), Positives = 432/810 (53%), Gaps = 61/810 (7%)
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
F + G+ H +C ++N RVE KHRH+ AL A++P+ FWG+ TAAYLIN
Sbjct: 527 FFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLIN 586
Query: 62 QLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
+ P L+ STP ++L+ K+P + L+ FG LCY H R K A RS C F+GY
Sbjct: 587 RTPSSVLNDSTPYERLHKKQPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHG 646
Query: 122 HKGYNCLTTE-GKVIITRNVLFDETVFPFQFQTSKSSS------------DILLDSSL-- 166
KG+ E + ++R+V+F E FPF+ ++ D L++ +
Sbjct: 647 QKGWRLFDLEQNEFFVSRDVVFSELEFPFRISHEQNVIEEEEEALWAPIVDGLIEEEVHL 706
Query: 167 -----PTTSVIPLLPIS-NASPNVMPHANS------VMPTVATNGSAPVVQTTVSDFSQP 214
PT + PIS +A+ + H+ S V+PT AT+ T+ S S P
Sbjct: 707 GQNAGPTPPICVSSPISPSATSSRSEHSTSSPLDTEVVPTPATS------TTSASSPSSP 760
Query: 215 A*DSGVVHASAQPTE------PPVPPSSNVHSMTTRAKTGIHRPKAYAASTALSSVPTSA 268
+ + A+PT P VPP +TR K K + +T + S
Sbjct: 761 TNLQFLPLSRAKPTTAQAVAPPAVPPPRR---QSTRNKAPPVTLKDFVVNTTVCQESPSK 817
Query: 269 K*ALSIP-------HWHQAMQEEYQAL---MNNNTWELVPLLHGRDAIGCKWVFRTKYNS 318
++ A Y A+ N+TW + L G+ AIG +WV++ K+NS
Sbjct: 818 LNSILYQLQKRDDTRRFSASHTTYVAIDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNS 877
Query: 319 DGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAF 378
DGS+ ++K RLVA G Q EG DY ETF+PV K T+R L +A+ W I Q D +NAF
Sbjct: 878 DGSVERYKARLVALGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAF 937
Query: 379 LNGELVEEVFMQQPPGFSKGSSHLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKC 438
L+G+L EEV+M+ PPGF + VC+L+KALYGLKQAPR WF+KL++ L R+GFQ +
Sbjct: 938 LHGDLREEVYMKLPPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLA 997
Query: 439 DTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEA 498
D SLF S + IL+YVDD+IITG+S A L + F +KDLG L YFLGIE
Sbjct: 998 DYSLFTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEV 1057
Query: 499 THTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVG 558
+ G+ + Q KY D++ + + + P+ P+ KL ++ L P YR +VG
Sbjct: 1058 ARSTT-GIYICQRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVG 1116
Query: 559 ALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSIT 618
L Y+ +TR ++AF ++ + +FM P E HW A R++RYL G++LRR IT
Sbjct: 1117 RLIYLAVTRLDLAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQIT 1176
Query: 619 AFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMW 678
+ DSDW DP RRS +G + G + +SW KKQ V++SS EAEYR+++ + +E++W
Sbjct: 1177 GWCDSDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLW 1236
Query: 679 LRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTVV 738
L+ LL L V ++ CD+ S +++ NP+ H +TKH +D HFVR+ +T
Sbjct: 1237 LKQLLFSLGVSHVQPMIMCCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPR 1296
Query: 739 NIPAPSQVSSTL--------FHCFKTKLRV 760
++ SQ++ F F+ KL +
Sbjct: 1297 HVGTTSQLADIFTKPLGRDCFSAFRIKLGI 1326
>At1g57640
Length = 1444
Score = 498 bits (1282), Expect = e-141
Identities = 285/793 (35%), Positives = 425/793 (52%), Gaps = 54/793 (6%)
Query: 7 GIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQLPIP 66
GI H +C QNGRVE KHRHI AL +++P+ FWG+ +AAYLIN+ P
Sbjct: 632 GIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSM 691
Query: 67 TLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHKGYN 126
L +P + LY P YS L+ FG LCY H + + K A RS C F+GY KG+
Sbjct: 692 LLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWR 751
Query: 127 CLTTEG-KVIITRNVLFDETVFPF-QFQTSKSSSDILLDSSLP----------------- 167
E K ++R+V+F ET FP+ + ++ +L+D P
Sbjct: 752 LFDLEEQKFFVSRDVIFQETEFPYSKMSCNEEDERVLVDCVGPPFIEEAIGPRTIIGRNI 811
Query: 168 ----------TTSVIPLLPISNASPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*D 217
T +IP + ++SP+ +S+ P +A++ VQT S
Sbjct: 812 GEATVGPNVATGPIIPEINQESSSPSEFVSLSSLDPFLASS----TVQTADLPLSSTTPA 867
Query: 218 SGVVHASAQPTEPP------VPPSSNVHSMTTRAKTGIHRP--------------KAYAA 257
+ S++ T+ P V + +V S++ A + P KA+ A
Sbjct: 868 PIQLRRSSRQTQKPMKLKNFVTNTVSVESISPEASSSSLYPIEKYVDCHRFTSSHKAFLA 927
Query: 258 STALSSVPTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYN 317
+ PT+ A+ W +AM E ++L N T+ +V L G+ A+G KWV++ KY
Sbjct: 928 AVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYR 987
Query: 318 SDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNA 377
SDG+I ++K RLV G Q EG DY+ETF+PV K +T+R L +A W + Q D +NA
Sbjct: 988 SDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNA 1047
Query: 378 FLNGELVEEVFMQQPPGFSKGSSHLVCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAK 437
FL+G+L EEV+M+ P GF VC+L K+LYGLKQAPR WF KLSS L ++GF +
Sbjct: 1048 FLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSL 1107
Query: 438 CDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIE 497
D SLF +++LVYVDD+II+GS A+ + L + F +KDLG L YFLGIE
Sbjct: 1108 SDYSLFSYNNDGIFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIE 1167
Query: 498 ATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVV 557
+ G LSQ KY+ D++ + + PS P+ KLS ++ L YR +V
Sbjct: 1168 VSRNAQ-GFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLV 1226
Query: 558 GALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSI 617
G L Y+ +TRPE+++ ++ + QFM +P + HW A R++RYL G+ L S++ I
Sbjct: 1227 GRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQI 1286
Query: 618 TAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIM 677
+ DSD+ + P RRS +G + +G +SW KKQ V+RSS EAEYR++A + E+M
Sbjct: 1287 NGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELM 1346
Query: 678 WLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTV 737
WL+ +L +L V + I+ D+ S + L NP+ H +TKH +D HF+R+ + D +
Sbjct: 1347 WLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIAT 1406
Query: 738 VNIPAPSQVSSTL 750
+P+ Q++ L
Sbjct: 1407 SFVPSHKQLADIL 1419
>At4g16870 retrotransposon like protein
Length = 1474
Score = 491 bits (1264), Expect = e-139
Identities = 271/583 (46%), Positives = 355/583 (60%), Gaps = 31/583 (5%)
Query: 176 PISNASPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGVVHASAQPTEPPVPPS 235
P + P PH V PT T +TTVSD AS QPT P
Sbjct: 891 PTNEIEPTPAPHPKPVKPTTTTTTPN---RTTVSD------------ASHQPTAP----Q 931
Query: 236 SNVHSMTTRAKTGIHRPKAYAASTAL-----SSVPTSAK*ALSIPHWHQAMQEEYQALMN 290
N H+M TRAK I +P + TA S PT+ AL W AM +E+ A
Sbjct: 932 QNQHNMKTRAKNNIKKPNTKFSLTATLPNRSPSEPTNVTQALKDKKWRFAMSDEFDAQQR 991
Query: 291 NNTWELVPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVV 350
N+TW+LVP + +GCKWVF+ KY +G+I+K+K RLVAKGF+Q G DY ETFSPV+
Sbjct: 992 NHTWDLVPH-ESQLLVGCKWVFKLKYLPNGAIDKYKARLVAKGFNQQYGVDYAETFSPVI 1050
Query: 351 KPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGF-SKGSSHLVCKLKKA 409
K TTIR VL +A+ W I+Q D NNAFL G L EEV+M QPPGF K VC+L+KA
Sbjct: 1051 KSTTIRLVLDVAVKKDWEIKQLDVNNAFLQGTLTEEVYMAQPPGFIDKDRPTHVCRLRKA 1110
Query: 410 LYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSST 469
+YGLKQAPRAW+ +L L GF + D SLF + +Y+LVYVDDII+TGS +
Sbjct: 1111 IYGLKQAPRAWYMELKQHLFNIGFVNSLSDASLFIYCHGTTFVYVLVYVDDIIVTGSDKS 1170
Query: 470 AIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPS 529
+I +++ L F +KD LHYFLGIEAT TK G L L Q KYI DLL K M P
Sbjct: 1171 SIDAVLTSLAERFSIKDPTDLHYFLGIEATRTKQG-LHLMQRKYIKDLLAKHNMADAKPV 1229
Query: 530 PTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHW 589
TP+ + KL+ + G YRSVVG+L Y+ TRP+IA+ +N++ Q M P E HW
Sbjct: 1230 LTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAYAVNRLSQLMPQPTEDHW 1289
Query: 590 QAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSW 649
QA KR+LRYL GT+THG++L S +++ AF+D+DW D DD ST+ IY+G N +SW
Sbjct: 1290 QAAKRVLRYLAGTSTHGIFLDTTSPLNLHAFSDADWAGDSDDYVSTNAYVIYLGKNPISW 1349
Query: 650 AAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSEL--RVPTSPSSLIYCDNLSVVHLV 707
++KKQ VARSSTE+EYR++A +E+ WL SLLS+L R+P PS I+CDN+ +L
Sbjct: 1350 SSKKQRGVARSSTESEYRAVANAASEVKWLCSLLSKLHIRLPIRPS--IFCDNIGATYLC 1407
Query: 708 ANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQVSSTL 750
ANP+ H++ KH A+D HFVR + + V ++ Q++ L
Sbjct: 1408 ANPVFHSRMKHIAIDYHFVRNMIQSGALRVSHVSTRDQLADAL 1450
Score = 162 bits (409), Expect = 9e-40
Identities = 101/263 (38%), Positives = 131/263 (49%), Gaps = 23/263 (8%)
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
FL GI H + P+ + NG E KHRHI ETGL LL A +P +W AF A YLIN
Sbjct: 604 FLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWPYAFAAAVYLIN 663
Query: 62 QLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
++P P L + +P QKL+ KP+Y L+ FGCLC+P RPY +KL RS C FLGYS
Sbjct: 664 RMPTPVLSMESPFQKLFGSKPNYERLRVFGCLCFPWLRPYTHNKLEERSRRCVFLGYSLT 723
Query: 122 HKGYNCLTTEGKVIIT-RNVLFDETVFPFQFQTSKSSSDILLDSSLPTTSVIPLLPISNA 180
Y C E K + T R+V+FDE FPF TS++S + + V P+L S+
Sbjct: 724 QTAYLCFDVEHKRLYTSRHVVFDEASFPFSNLTSQNSLPTVTFEQSSSPLVTPILSSSSV 783
Query: 181 SPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGVVHASAQPTEPPVPPSSNVHS 240
P+ + P + P V T S S+QPT P P S H
Sbjct: 784 LPSCLS-----SPCTVLHQQQPPVTTPNSPH------------SSQPTTSPAPLSP--HR 824
Query: 241 MTTRAKTGIHRPKAYAASTALSS 263
TT P+ ++S LSS
Sbjct: 825 STT---MDFQVPQVRSSSPLLSS 844
>At4g27200 putative protein
Length = 819
Score = 478 bits (1231), Expect = e-135
Identities = 289/704 (41%), Positives = 385/704 (54%), Gaps = 68/704 (9%)
Query: 91 GCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHKGYNCL-TTEGKVIITRNVLFDETVFPF 149
G C+P R Y +K S C FLGY+ +KGY CL G++ I+R+V+FDE+V+PF
Sbjct: 15 GSACFPTLRDYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPF 74
Query: 150 QF----------------------------QTSKSSSDILLDSS----LP--TTSVIP-L 174
TS SS L S+ LP T ++P L
Sbjct: 75 SHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPSSRSPLFTSADFPPLPQRKTPLLPTL 134
Query: 175 LPISNASPNVMPHANSV----MPTVATNGSAPVVQTTVSD---FSQPA*DSGVVHASAQP 227
+PIS+ S HA+++ P + + ++ D SQ DS A
Sbjct: 135 VPISSVS-----HASNITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSDSEETIQQASV 189
Query: 228 TEPPVPPSSNVHSMTTRAKTGIHRPK---AYAASTALSSVPTSAK*ALSIPHWHQAMQEE 284
P S+NVH M TRAK GI +P + + P + AL P W AM EE
Sbjct: 190 NVHQTPASTNVHPMVTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKHPGWTGAMTEE 249
Query: 285 YQALMNNNTWELVPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNE 344
TW LVP +G KWVFRTK ++DG++NK K R+VAKGF Q EG DY E
Sbjct: 250 IGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLE 309
Query: 345 TFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFSKGSSHLVC 404
T+SPVV+ T+R VL LA W I+Q D NAFL+G+L E V+M QP + H VC
Sbjct: 310 TYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVYMTQP---AANRDH-VC 365
Query: 405 KLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIIT 464
L K++YGLKQ+PRAWFDK S+ L FGF K D SLF + + +L+
Sbjct: 366 LLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCRKSDPSLFIYAHNNNLILLLL-------- 417
Query: 465 GSSSTAIFSLIADLNAVFPLKDLGSLHY-FLGIEATHTKDGGLILSQTKYINDLLIKAKM 523
S + SL+A LN F + D+G FLGI+ + GL +SQ KY DLLI A M
Sbjct: 418 ---SQTLTSLLAALNKEFRMTDMGQHSLTFLGIQ-VQRQQNGLFMSQQKYAEDLLIAASM 473
Query: 524 DSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHS 583
+ P PTP+ L + LF P +RS+ G L Y+T+TRP+I F +N VCQ MH
Sbjct: 474 EHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQKMHQ 533
Query: 584 PLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIG 643
P + +KRILRY+ GT T G+ R S + A++DSDWG+ RRS G+C ++G
Sbjct: 534 PTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNCKQTRRSVGGLCTFMG 593
Query: 644 GNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSV 703
NLVSW++KK V+RSSTEAEY+SL+ +EI+WL +LL ELR+P + ++CDNLS
Sbjct: 594 TNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSA 653
Query: 704 VHLVANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQVS 747
V+L ANP H +TKHF +D HFVRERVA K + V +IP Q++
Sbjct: 654 VYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQIA 697
>At4g07810 putative polyprotein
Length = 1366
Score = 455 bits (1171), Expect = e-128
Identities = 275/759 (36%), Positives = 393/759 (51%), Gaps = 68/759 (8%)
Query: 3 LTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQ 62
L GI H +C Y QQN VE H+H+ +L +++PL +W + TAA+LIN+
Sbjct: 602 LATFGIFHYHSCAYTPQQNYVVERNHQHLLNVARSLYFQSNIPLAYWPECVSTAAFLINR 661
Query: 63 LPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMH 122
P P L+ +P + LY K PDY+ L+ F CLCY T + HK R+ C F+GY
Sbjct: 662 TPTPNLEHKSPYEVLYKKLPDYNSLRVFCCLCYASTHQHERHKFTERATSCVFIGYESGF 721
Query: 123 KGYNCLTTEGKVI-ITRNVLFDETVFPFQFQTSKSSSDILLDSSLPTT------------ 169
KGY L E + +TRNV+F ET+FPF + S + DS LP +
Sbjct: 722 KGYKILDLESNTVSVTRNVVFHETIFPFIDKHSTQNVSFFDDSVLPISEKQKENRFQIYD 781
Query: 170 --SVIPLLPISNASPNVMP---HANSVMP---TVATNGSAPVVQTTVSDFSQPA*DSGV- 220
+V+ L P +P H S+ P TV + + T+ + S +
Sbjct: 782 YFNVLNLEVCPVIEPTTVPAHTHTRSLAPLSTTVTNDQFGNDMDNTLMPRKETRAPSYLS 841
Query: 221 -VHASAQPTEPPVPPSSNVHSMTTRAKTG--IHRPKAYAASTALSSVPTSAK*ALSIPHW 277
H S EP HS+++ + + + + PT+ K A + W
Sbjct: 842 QYHCSNVLKEPSSSLHGTAHSLSSHLSYDKLSNEYRLFCFAIIAEKEPTTFKEAALLQKW 901
Query: 278 HQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQT 337
AM E AL++ +T E+ L G+ AIGCKWVF+ KY SDG+I ++K RLVA G+ Q
Sbjct: 902 LDAMNVELDALVSTSTREICSLHDGKRAIGCKWVFKIKYKSDGTIERYKARLVANGYTQQ 961
Query: 338 EGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFSK 397
EG DY +TFSP+ K T++R +L+LA +H W I Q D NAFL+G+ EE++MQ P G++
Sbjct: 962 EGVDYIDTFSPIAKLTSVRLILALAAIHNWSISQMDVTNAFLHGDFEEEIYMQLPQGYTP 1021
Query: 398 GSSHL-----VCKLKKALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETL 452
L VC+L K+LYGLKQA R WF K S L + GF + D +LF + + L
Sbjct: 1022 RKGELLPKRPVCRLVKSLYGLKQASRQWFHKFSGVLIQNGFMQSLFDPTLFVRVREDTFL 1081
Query: 453 YILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTK 512
+LVYVDDI++ + +A+ + L F LKDLG YFLG+E +K+ G+ +SQ K
Sbjct: 1082 ALLVYVDDIMLVSNKDSAVIEVKQILAKEFKLKDLGQKRYFLGLEIARSKE-GISISQRK 1140
Query: 513 YINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAF 572
Y +LL + P PTPM LKLS GAL YR ++G L Y+T+TRP+I F
Sbjct: 1141 YALELLEEFGFLGCKPVPTPMELNLKLSQEDGALLLDASHYRKLIGRLVYLTVTRPDICF 1200
Query: 573 PLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDR 632
+NK+ Q+M +P EPH A +RILRYL G++ S+++ AFAD+DW + P+
Sbjct: 1201 AVNKLNQYMSAPREPHLMAARRILRYLKNDPGQGVFYPASSTLTFRAFADADWSNCPESS 1260
Query: 633 RSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSP 692
S S +V W + STEA WL L +
Sbjct: 1261 ISIS---------IVFW--------LKLSTEA-------------WLVLSLPD------- 1283
Query: 693 SSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVA 731
+ +Y D+ S +H+ N + H TK+F D+H VRE+VA
Sbjct: 1284 TIFVYYDDESALHIAKNSVFHESTKNFLHDIHVVREKVA 1322
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 454 bits (1168), Expect = e-128
Identities = 270/798 (33%), Positives = 406/798 (50%), Gaps = 109/798 (13%)
Query: 7 GIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQLPIP 66
G+ H +C Y QQN VE KH+HI ALL +++P+ +W D TA +LIN+LP P
Sbjct: 717 GMLHHFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSP 776
Query: 67 TLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHKGYN 126
L+ +P + + +K+PDYS LK FGCLC+ T + K R+ C FLGY +KGY
Sbjct: 777 LLNNKSPYELILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYK 836
Query: 127 CLTTEG-KVIITRNVLFDETVFPFQF-QTSKSSSDILLDSSLPTT--------------- 169
L E V ++RNV+F E VFPF+ + + D+ +S LP
Sbjct: 837 VLDLESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSILPLPAPLHFVETMPLIDED 896
Query: 170 SVIPLLPISNASPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DS----------G 219
S+IP S + N ++S +P++ S Q S+ + P S
Sbjct: 897 SLIPTTTDSRTADNHASSSSSALPSIIPPSSNTETQDIDSN-AVPITRSKRTTRAPSYLS 955
Query: 220 VVHASAQP---TEPPVPPSSNVHSMTTR-AKTGIHRPKAYAASTALS------------- 262
H S P T PP S +H + + + Y ST +S
Sbjct: 956 EYHCSLVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIF 1015
Query: 263 -----SVPTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRTKYN 317
+ P + A+ W + EE QA+ N TW + L ++ +GCKWVF KYN
Sbjct: 1016 AYNTETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYN 1075
Query: 318 SDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNA 377
DG++ ++K RLVA+GF Q EG D+ +TFSPV K T+ + +L LA + W + Q D ++A
Sbjct: 1076 PDGTVERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDA 1135
Query: 378 FLNGELVEEVFMQQPPGFSKGSSHL-----VCKLKKALYGLKQAPRAWFDKLSSTLARFG 432
FL+G+L EE+FM P G++ + + VC+L K++YGLKQA R W+ +
Sbjct: 1136 FLHGDLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKR--------- 1186
Query: 433 FQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHY 492
F AA LVY+DDI+I ++ + +L A L + F +KDLG +
Sbjct: 1187 FVAA------------------LVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARF 1228
Query: 493 FLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPKPLL 552
FLG+ PS PM L L + G P P
Sbjct: 1229 FLGLLGC---------------------------KPSSIPMDPTLHLVRDMGTPLPNPTA 1261
Query: 553 YRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRP 612
YR ++G L Y+TITRP+I + ++++ QF+ +P + H QA ++LRY+ GL
Sbjct: 1262 YRKLIGRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSAD 1321
Query: 613 SSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSLALV 672
+ + F+D+DW + D RRS SG CIY+G +L+SW +KKQ V +RSSTE+EYRS+A
Sbjct: 1322 YEICLNGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQA 1381
Query: 673 ITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVAD 732
EI+WL+ LL +L +P + + ++CDN S +H NP+ H +TKH +D H VR+++
Sbjct: 1382 TCEIIWLQQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKA 1441
Query: 733 KQVTVVNIPAPSQVSSTL 750
+ +++P +Q + L
Sbjct: 1442 GNLKALHVPTENQHADIL 1459
>At3g60170 putative protein
Length = 1339
Score = 441 bits (1135), Expect = e-124
Identities = 262/773 (33%), Positives = 401/773 (50%), Gaps = 31/773 (4%)
Query: 2 FLTQCGIQHRLTCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLIN 61
F GI +LT + QQNG E K+R I ++L+ +P FW +A + + ++ N
Sbjct: 577 FCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEATKWSVHIQN 636
Query: 62 QLPIPTLDLSTPLQKLYDKKPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPM 121
+ P ++ TP + +KP + + FGC+ Y H KL +S C FLG S
Sbjct: 637 RSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCVFLGVSEE 696
Query: 122 HKGYNCLT-TEGKVIITRNVLFDETVFPFQFQTSKSSSDILLD----SSLPTTSVIPLLP 176
K + K++I+++V+FDE Q + ++ L+ + V+ P
Sbjct: 697 SKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQADVEAKEVTLECGDEDDEKNSEVVE--P 754
Query: 177 ISNASPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQPA*DSGVVHASAQPTEPPVPPSS 236
I+ ASPN + N+V S+P++ S PA +A+ T PP
Sbjct: 755 IAVASPNHVGSDNNV-------SSSPILAP-----SSPAPSP----VAAKVTRERRPPGW 798
Query: 237 NVHSMTTRAKTGIHRPKAYAASTALSSVPTSAK*ALSIPHWHQAMQEEYQALMNNNTWEL 296
T + + P A+ W +AM+ E ++++ NNTWEL
Sbjct: 799 MADYETGEGEEIEENLSVMLLMMMTEADPIQFDDAVKDKIWREAMEHEIESIVKNNTWEL 858
Query: 297 VPLLHGRDAIGCKWVFRTKYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIR 356
L G IG KWV++TK N DG ++K+K RLVAKG+ Q G DY E F+PV + T+R
Sbjct: 859 TTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAPVARLDTVR 918
Query: 357 TVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGF-SKGSSHLVCKLKKALYGLKQ 415
T+L+++ W I Q D +AFL+GEL EEV+++QP GF +G V KL+KALYGLKQ
Sbjct: 919 TILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKLRKALYGLKQ 978
Query: 416 APRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLI 475
APRAW+ ++ + + F+ + +LF K L + +YVDD+I TGS
Sbjct: 979 APRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGNILIVSLYVDDLIFTGSDKAMCDEFK 1038
Query: 476 ADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTS 535
+ F + DLG + +FLGIE + DGG+ + Q +Y ++L + MD N P+
Sbjct: 1039 KSMMLEFEMSDLGKMKHFLGIEVKQS-DGGIFICQRRYAREVLARFGMDESNAVKNPIVP 1097
Query: 536 GLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRI 595
G KL+ + +++ +VG+L Y+T+TRP++ + + + +FM +P HW A KRI
Sbjct: 1098 GTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMSHWLAAKRI 1157
Query: 596 LRYLHGTATHGLYLRRPS--SMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKK 653
LRYL GT G++ RR S+ + AF DSD+ D +DRRSTSG + + WA+KK
Sbjct: 1158 LRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMASGAICWASKK 1217
Query: 654 QTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILH 713
Q VVA S+TEAEY + A + +WLR +L +L +++I CDN S + L +P+LH
Sbjct: 1218 QPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTIQLSKHPVLH 1277
Query: 714 TKTKHFALDLHFVRERVADKQVTVVNIPAPSQVSSTLFHCFK----TKLRVLV 762
K+KH + H++R+ V V + P QV+ K KLR L+
Sbjct: 1278 GKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQVADIFTKPLKLEQFEKLRALL 1330
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 429 bits (1104), Expect = e-120
Identities = 250/681 (36%), Positives = 371/681 (53%), Gaps = 49/681 (7%)
Query: 118 YSPMHKGYNCLTTEGKVI-ITRNVLFDETVFPFQFQTS-KSSSDILLDSSLPTTSVIPLL 175
Y +KGY L E I ITRNV+F ET FPF+ K S D+ +S LP + + +
Sbjct: 335 YPSGYKGYKVLDLESHSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFV 394
Query: 176 PISNASPNVMPHAN--SVMPTVATNGSAPVVQTTVSDFSQPA*DSGVVHAS-AQPTEPPV 232
++ N S + ++ S P + +TV+ + A D A+P
Sbjct: 395 ESMPLDDDLRADDNNASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKRNAK 454
Query: 233 PPS--SNVH--------SMTTRAKTGIHRPKA----------YAASTALS---------- 262
P+ S H S++ T I P + Y STA+S
Sbjct: 455 APAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTPLFHS 514
Query: 263 --------SVPTSAK*ALSIPHWHQAMQEEYQALMNNNTWELVPLLHGRDAIGCKWVFRT 314
+ P + A+ W +A EE AL N TW + L G++ +GCKWVF
Sbjct: 515 YICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTI 574
Query: 315 KYNSDGSINKHKPRLVAKGFHQTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDF 374
KYN DGSI ++K RLVA+GF Q EG DY ETFSPV K +++ +L LA W + Q D
Sbjct: 575 KYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDV 634
Query: 375 NNAFLNGELVEEVFMQQPPGFSKGS-----SHLVCKLKKALYGLKQAPRAWFDKLSSTLA 429
+NAFL+GEL EE++M P G++ + S VC+L K+LYGLKQA R W+ +LSS
Sbjct: 635 SNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFL 694
Query: 430 RFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGS 489
F + D ++F K + + + +LVYVDD++I + S+A+ +L L + F +KDLG
Sbjct: 695 GANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGP 754
Query: 490 LHYFLGIEATHTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLKLSANSGALFPK 549
+FLG+E + +G + + Q KY +LL + PS PM L L+ G L P
Sbjct: 755 ARFFLGLEIARSSEG-ISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPN 813
Query: 550 PLLYRSVVGALHYVTITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYL 609
YR +VG L Y+ ITRP+I F ++ + QF+ +P + H QA ++LRYL G GL
Sbjct: 814 ATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMY 873
Query: 610 RRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSWAAKKQTVVARSSTEAEYRSL 669
S + + F+D+DWG+ D RRS +G CIY+G +L++W +KKQ+VV+RSSTE+EYRSL
Sbjct: 874 SASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSL 933
Query: 670 ALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRER 729
A EI+WL+ LL +L V + + ++CDN S +HL NP+ H +TKH +D H VR++
Sbjct: 934 AQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQ 993
Query: 730 VADKQVTVVNIPAPSQVSSTL 750
+ ++ +++P +Q++ L
Sbjct: 994 IKAGKLKTLHVPTGNQLADIL 1014
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,313,648
Number of Sequences: 26719
Number of extensions: 744419
Number of successful extensions: 2290
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1731
Number of HSP's gapped (non-prelim): 219
length of query: 768
length of database: 11,318,596
effective HSP length: 107
effective length of query: 661
effective length of database: 8,459,663
effective search space: 5591837243
effective search space used: 5591837243
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0378b.9