BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0366.1
(1346 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13940 putative retroelement pol polyprotein 812 0.0
At2g16000 putative retroelement pol polyprotein 802 0.0
At1g57640 799 0.0
At2g20460 putative retroelement pol polyprotein 795 0.0
At2g23330 putative retroelement pol polyprotein 791 0.0
At1g70010 hypothetical protein 787 0.0
At2g16670 putative retroelement pol polyprotein 748 0.0
At4g17450 retrotransposon like protein 732 0.0
At1g31210 putative reverse transcriptase 635 0.0
At4g10690 retrotransposon like protein 591 e-169
At3g25450 hypothetical protein 570 e-162
At4g10990 putative retrotransposon polyprotein 566 e-161
At4g23160 putative protein 527 e-149
At2g07010 putative retroelement pol polyprotein 525 e-149
At4g22040 LTR retrotransposon like protein 513 e-145
At2g05390 putative retroelement pol polyprotein 506 e-143
At1g36620 hypothetical protein 501 e-142
At1g47650 hypothetical protein 496 e-140
At1g37110 493 e-139
At2g24660 putative retroelement pol polyprotein 492 e-139
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 812 bits (2097), Expect = 0.0
Identities = 434/967 (44%), Positives = 589/967 (60%), Gaps = 37/967 (3%)
Query: 417 ALWHFRLGHLSHDRLLALHTVQNSISVSKSIVCDVCHLAKQKRKMFTVSVSKAQKCFDLV 476
ALWH RLGH S L +L + S S CDVC AKQ R++F S++K ++CF L+
Sbjct: 528 ALWHQRLGHPSFSVLSSLPLFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLI 587
Query: 477 HMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQIV 536
H D+WGP + YFLT++DDYSR VW LL K EV+Q + NF+ + QFG+ V
Sbjct: 588 HCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTV 647
Query: 537 KAIRSDNGPEFL-LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSKLP 595
K +RSDNG EF+ L +++ GI+HQ SCV TPQQNGRVERKH+HILN+ARALLFQ+ LP
Sbjct: 648 KMVRSDNGTEFMCLSSYFRENGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLP 707
Query: 596 KKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNRSK 655
K W S+L A +L+NR PS +L ++PYE+L+ ++VFGS C+ +T ++ K
Sbjct: 708 IKFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKPVYSQLRVFGSACYVHRVTRDKDK 767
Query: 656 LDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSNSPAWTCLDLQT 715
R+R CIF+GY G KG+ + D+ E +SRDVIF E V PY G NS L T
Sbjct: 768 FGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVIFREEVFPYAGVNSSTLASTSLPT 827
Query: 716 QAES---TADKLNVASEIQSAKGDASVSTPCASIEDGV--QHEMPSGASIEDEIP----- 765
+E L V I S + + V T + D E+P+ + D+ P
Sbjct: 828 VSEDDDWAIPPLEVRGSIDSVETERVVCTTDEVVLDTSVSDSEIPNQEFVPDDTPPSSPL 887
Query: 766 --------NTQTVDEIPQPGSITAEGEVEVRRSTRPLKRPVHLANF-------------Q 804
NT T + S + R+S R P L ++
Sbjct: 888 SVSPSGSPNTPTTPIVVPVASPIPVSPPKQRKSKRATHPPPKLNDYVLYNAMYTPSSIHA 947
Query: 805 FSALPIRSSTAHS-----IVHHYSDERLSTAHRAYALNIAQDQEPSTFAEANKDLHWREA 859
A P +SST + + SD S++HRAY I + EP F EA + W +A
Sbjct: 948 LPADPSQSSTVPGKSLFPLTDYVSDAAFSSSHRAYLAAITDNVEPKHFKEAVQIKVWNDA 1007
Query: 860 MQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGL 919
M E+ ALE N TW +VDLP G IG++WV++ K N DGT+ RYKARLV +G QVEG
Sbjct: 1008 MFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVEGE 1067
Query: 920 DYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVPSVKP 979
DY +TF+PV ++TTVR +L A+ W ++Q+DV NAFLHG+L+E+VYM +P G P
Sbjct: 1068 DYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHP 1127
Query: 980 NQVCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDD 1039
++VC+L KSLYGLKQA R W++KLS L GF Q+ D+SLF + + +L+YVDD
Sbjct: 1128 DKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDD 1187
Query: 1040 VILFGNTVTEFQLVKDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQET 1099
+++ GN Q KD L + F +KDLG LKYFLG+EV+ GI L QRKY LD++ ++
Sbjct: 1188 LLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADS 1247
Query: 1100 GTLGSKPVATPLDPSIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYM 1159
G LGS+P TPL+ + L+ + G DP YRRLVGRLLYL TRP++S++ L+Q+M
Sbjct: 1248 GNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFM 1307
Query: 1160 SNPMDGHFKAAQRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFY 1219
NP + HF AA RV+RYLK SPG G+L + + ++ Y D+DW CP TRRSIS Y
Sbjct: 1308 QNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVVL 1367
Query: 1220 IGRSLVSWKAKKQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQ 1279
+G S +SWK KKQ TVS SS EAEYRA++YA E++WL LL++L + + L+CD++
Sbjct: 1368 LGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDSK 1427
Query: 1280 SALHIAANPVFHERTKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTKALQPRVFQG 1339
+A+HIAANPVFHERTKH++ DCH VR+ ++ GI+ + TT Q+ADVFTKAL F
Sbjct: 1428 AAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQLADVFTKALGRNQFLY 1487
Query: 1340 FATKLAM 1346
+KL +
Sbjct: 1488 LMSKLGV 1494
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 802 bits (2071), Expect = 0.0
Identities = 421/940 (44%), Positives = 591/940 (62%), Gaps = 59/940 (6%)
Query: 417 ALWHFRLGHLSHDRLLALHTVQNSISVSK-----SIVCDVCHLAKQKRKMFTVSVSKAQK 471
++WH RLGH S RL A + +S+ ++ S C VCHLAKQ++ F S ++
Sbjct: 556 SMWHRRLGHASLQRLDA---ISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKE 612
Query: 472 CFDLVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQ 531
FDL+H+D+WGP + +V +KYFLT++DD+SR W+ LL K EV FI V+ Q
Sbjct: 613 IFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQ 672
Query: 532 FGQIVKAIRSDNGPEFLLPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQ 591
+ VKA+RSDN PE +FY+ +GIV SC TP+QN VERKHQHILN+ARAL+FQ
Sbjct: 673 YKVKVKAVRSDNAPELKFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQ 732
Query: 592 SKLPKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTN 651
S++P +W VL AVFL+NR PS+LL NK+PYE+L A E ++ FG LC+++T
Sbjct: 733 SQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPK 792
Query: 652 NRSKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSNSPAWTCL 711
R K PR+R C+FLGY G KGY LMDL + +FISR+V FHE V P
Sbjct: 793 QRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPL----------- 841
Query: 712 DLQTQAESTADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEIPNTQTVD 771
++ ++ + TP + G+ + S +P+ +
Sbjct: 842 ----------------AKNPGSESSLKLFTPMVPVSSGIISDTTHSPS---SLPSQ--IS 880
Query: 772 EIPQPGSITAEGEVEVRRSTRPLKRPVHLANFQFSALPIRSSTAHSIVHHYSDERLSTAH 831
++P S S R K P HL ++ + + +S + I S ++S +H
Sbjct: 881 DLPPQIS-----------SQRVRKPPAHLNDYHCNTM--QSDHKYPISSTISYSKISPSH 927
Query: 832 RAYALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPIGNKWVY 891
Y NI + P+ +AEA W EA+ AEI A+EK TW++ LP+G K +G KWV+
Sbjct: 928 MCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVF 987
Query: 892 RVKRNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQL 951
+K DG L RYKARLVAKGY Q EGLDY DTFSPVAK+TT++++L ++AS+ W L QL
Sbjct: 988 TLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQL 1047
Query: 952 DVDNAFLHGNLDEDVYMTIPAGVPSVK-----PNQVCKLLKSLYGLKQASRKWYEKLSAH 1006
DV NAFL+G L+E+++M IP G K N V +L +S+YGLKQASR+W++K S+
Sbjct: 1048 DVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSS 1107
Query: 1007 LETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIKDL 1066
L +LGFK+T DH+LF+K F +LVYVDD+++ + + + L Q F ++DL
Sbjct: 1108 LLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDL 1167
Query: 1067 GVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDPSIRLSQEQGKPYD 1126
G LKYFLGLEVA +T+GIS+CQRKY L+LLQ TG L KPV+ P+ P++++ ++ G +
Sbjct: 1168 GDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIE 1227
Query: 1127 DPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRVLRYLKASPGLGLL 1186
D YRR+VG+L+YLT TRPDI+ A +L Q+ S P H AA RVL+Y+K + G GL
Sbjct: 1228 DIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLF 1287
Query: 1187 FPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYRA 1246
+ +S + ++G++D+DWA C D+RRS + + ++G SL+SW++KKQ TVSRSS EAEYRA
Sbjct: 1288 YSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRA 1347
Query: 1247 LAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHERTKHLDIDCHVVRE 1306
LA ATCE+ WL LL L+ + P+L+ D+ +A++IA NPVFHERTKH+ +DCH VRE
Sbjct: 1348 LALATCEMVWLFTLLVSLQAS-PPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRE 1406
Query: 1307 KLQAGILKLLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
+L G LKLL + T QVAD+ TK L P F+ +K+++
Sbjct: 1407 RLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSI 1446
>At1g57640
Length = 1444
Score = 799 bits (2064), Expect = 0.0
Identities = 424/952 (44%), Positives = 595/952 (61%), Gaps = 22/952 (2%)
Query: 415 PGALWHFRLGHLSHDRLLALHTVQNSISVSKSI---VCDVCHLAKQKRKMFTVSVSKAQK 471
P LWH RLGH S D+++ L + +S K I VCD C AKQ R F +S +++
Sbjct: 488 PFDLWHRRLGHAS-DKIVNL-LPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMD 545
Query: 472 CFDLVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQ 531
F L+H D+WGP S +YFLT++DDYSR VWV L+ +K E Q+ +K+FI LV+ Q
Sbjct: 546 SFQLIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQ 605
Query: 532 FGQIVKAIRSDNGPEFL-LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLF 590
F +K +RSDNG EFL + ++ +GI H+ SCV TP QNGRVERKH+HILNIARAL F
Sbjct: 606 FDTEIKIVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRF 665
Query: 591 QSKLPKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLT 650
QS LP + W +L A +L+NR PS LL+ KSPYE+LY+ A ++VFGSLC+A
Sbjct: 666 QSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQN 725
Query: 651 NNRSKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPY------KGSN 704
+ K R+R+C+F+GY G KG+ L DL Q+ F+SRDVIF E PY +
Sbjct: 726 HKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNEEDE 785
Query: 705 SPAWTCLDLQTQAESTADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMPS---GASIE 761
C+ E+ + + I A +V+T E + PS S
Sbjct: 786 RVLVDCVGPPFIEEAIGPRTIIGRNIGEATVGPNVATGPIIPEINQESSSPSEFVSLSSL 845
Query: 762 DEIPNTQTVDEIPQPGSITAEGEVEVRRSTRPLKRPVHLANFQFSALPIRS-------ST 814
D + TV P S T +++RRS+R ++P+ L NF + + + S S+
Sbjct: 846 DPFLASSTVQTADLPLSSTTPAPIQLRRSSRQTQKPMKLKNFVTNTVSVESISPEASSSS 905
Query: 815 AHSIVHHYSDERLSTAHRAYALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWK 874
+ I + R +++H+A+ + EP+T+ EA D WREAM AEI++L N T+
Sbjct: 906 LYPIEKYVDCHRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFS 965
Query: 875 LVDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTV 934
+V+LP G + +GNKWVY++K DG + RYKARLV G Q EG+DY +TF+PVAK++TV
Sbjct: 966 IVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTV 1025
Query: 935 RVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVPSVKPNQVCKLLKSLYGLKQ 994
R+ L +AA+++WH+HQ+DV NAFLHG+L E+VYM +P G P++VC+L KSLYGLKQ
Sbjct: 1026 RLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQ 1085
Query: 995 ASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLVK 1054
A R W+ KLS+ L+ GF Q+ SD+SLF F +LVYVDD+I+ G+ K
Sbjct: 1086 APRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLIISGSCPDAVAQFK 1145
Query: 1055 DSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDPS 1114
L F +KDLG+LKYFLG+EV+ + G L QRKY LD++ E G LG++P A PL+ +
Sbjct: 1146 SYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQN 1205
Query: 1115 IRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRVL 1174
+LS D + YRRLVGRL+YL TRP++S++ L+Q+M NP H+ AA RV+
Sbjct: 1206 HKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVV 1265
Query: 1175 RYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQTT 1234
RYLK++PG G+L ST+ I G+ D+D+A CP TRRS++GY +G + +SWK KKQ T
Sbjct: 1266 RYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPT 1325
Query: 1235 VSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHERT 1294
VSRSS EAEYRA+A+ T EL WL +L DL V+ +F D++SA+ ++ NPV HERT
Sbjct: 1326 VSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHERT 1385
Query: 1295 KHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
KH+++DCH +R+ + GI+ +P+ Q+AD+ TKAL + + F KL +
Sbjct: 1386 KHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKLGI 1437
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 795 bits (2053), Expect = 0.0
Identities = 423/937 (45%), Positives = 582/937 (61%), Gaps = 57/937 (6%)
Query: 417 ALWHFRLGHLSHDRLLALHTVQNSI--SVSKSIVCDVCHLAKQKRKMFTVSVSKAQKCFD 474
++WH RLGH S RL +L V + KS C VCHLAKQK+ F + + F+
Sbjct: 567 SVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFE 626
Query: 475 LVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQ 534
L+H+D+WGP + +V +KYFLT++DD+SR W+ LL +K +V FI LV+ Q+
Sbjct: 627 LLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDT 686
Query: 535 IVKAIRSDNGPEFLLPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSKL 594
VK++RSDN E FY A+GIV SC TP+QN VERKHQHILN+ARAL+FQS +
Sbjct: 687 RVKSVRSDNAKELAFTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNM 746
Query: 595 PKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNRS 654
W VL AVFL+NR PS LL NK+P+E+L + D +K FG LC+++T + R
Sbjct: 747 SLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRH 806
Query: 655 KLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSNSPAWTCLDLQ 714
K PR+R C+FLGY G KGY L+DL + + ISR+V FHE + P
Sbjct: 807 KFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFP--------------- 851
Query: 715 TQAESTADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEIPNTQTVDEIP 774
+AS QSA + V TP + SG SI +P+ Q
Sbjct: 852 -----------LASSQQSATTASDVFTP--------MDPLSSGNSITSHLPSPQ------ 886
Query: 775 QPGSITAEGEVEVRRSTRPLKRPVHLANFQFSALPIRSSTAHSIVHHYSDERLSTAHRAY 834
I+ ++ RR T K P HL ++ + +H I S ++S +H Y
Sbjct: 887 ----ISPSTQISKRRIT---KFPAHLQDYH--CYFVNKDDSHPISSSLSYSQISPSHMLY 937
Query: 835 ALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVK 894
NI++ P ++ EA W A+ EI A+E+ TW++ LP G K +G KWV+ VK
Sbjct: 938 INNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVK 997
Query: 895 RNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVD 954
+ DG+L R+KAR+VAKGY Q EGLDY +TFSPVAK+ TV+++L ++AS+ W+L+QLD+
Sbjct: 998 FHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDIS 1057
Query: 955 NAFLHGNLDEDVYMTIPAGVPSVK-----PNQVCKLLKSLYGLKQASRKWYEKLSAHLET 1009
NAFL+G+L+E +YM +P G +K PN VC+L KS+YGLKQASR+W+ K S L
Sbjct: 1058 NAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLA 1117
Query: 1010 LGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIKDLGVL 1069
LGF++ DH+LFV+ GS F LLVYVDD+++ T Q + ++L +F +++LG L
Sbjct: 1118 LGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPL 1177
Query: 1070 KYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDPSIRLSQEQGKPYDDPA 1129
KYFLGLEVA ++ GISL QRKY L+LL L KP + P+ P+IRLS+ G +D
Sbjct: 1178 KYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKE 1237
Query: 1130 AYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRVLRYLKASPGLGLLFPR 1189
YRRLVG+L+YLT TRPDI+ A +L Q+ S P H A +VL+Y+K + G GL +
Sbjct: 1238 MYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSA 1297
Query: 1190 NSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYRALAY 1249
+ ++GY+DADW CPD+RRS +G+ ++G SL+SW++KKQ TVSRSS EAEYRALA
Sbjct: 1298 EDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALAL 1357
Query: 1250 ATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHERTKHLDIDCHVVREKLQ 1309
A+CE+ WL LL L+V + P+L+ D+ +A++IA NPVFHERTKH++IDCH VREKL
Sbjct: 1358 ASCEMAWLSTLLLALRVH-SGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLD 1416
Query: 1310 AGILKLLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
G LKLL + T QVAD+ TK L P F +K+++
Sbjct: 1417 NGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSI 1453
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 791 bits (2043), Expect = 0.0
Identities = 443/992 (44%), Positives = 591/992 (58%), Gaps = 62/992 (6%)
Query: 416 GALWHFRLGHLSHDRLLALHTV-QNSISVSKSIVCDVCHLAKQKRKMFTVSVSKAQKCFD 474
G LWH RLGH S LL+L ++S K CD C +KQ R++F +S +K +CF
Sbjct: 499 GDLWHRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVFPISNNKTMECFS 558
Query: 475 LVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQ 534
L+H D+WGP S YFLT++DDYSR VW L+++K EV Q +KNF + + QFG+
Sbjct: 559 LIHGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGK 618
Query: 535 IVKAIRSDNGPEFL-LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSK 593
VKA R+DNG EF+ L ++ GI+HQ SCV TPQQNGRVERKH+HILN+ARA LFQ
Sbjct: 619 QVKAFRTDNGTEFMCLTPYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGN 678
Query: 594 LPKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNR 653
LP K W S+L A L+NR PS +LK K+PYELL+ E +M++ FG LC+A N+
Sbjct: 679 LPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDMLRSFGCLCYAHIRPRNK 738
Query: 654 SKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKG---SNSPA--- 707
K R+RKC+F+GY G K + + DL T +IF SRDV FHE + PY SN P
Sbjct: 739 DKFTSRSRKCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPP 798
Query: 708 --------WTCLDLQTQAEST-ADKLNVASEIQSAKGDA-------SVSTPCASIEDGVQ 751
W L + TQ +ST D + +S QS D S ST + + +
Sbjct: 799 TPPMVNDDWF-LPISTQVDSTNVDSSSSSSPAQSGSIDQPPRSIDQSPSTSTNPVPEEIG 857
Query: 752 HEMPSG--------------ASIEDEIPNTQTVDEIPQPG--SITAEGEVEVRRS----- 790
+PS AS E+ +T PG + +G E ++S
Sbjct: 858 SIVPSSSPSRSIDRSTSDLSASDTTELLSTGESSTPSSPGLPELLGKGCREKKKSVLLKD 917
Query: 791 -----TRPLKRPVHLANFQFSALP-----------IRSSTAHSIVHHYSDERLSTAHRAY 834
T K H + LP + T + + ++ S H A+
Sbjct: 918 FVTNTTSKKKTASHNIHSPSQVLPSGLPTSLSADSVSGKTLYPLSDFLTNSGYSANHIAF 977
Query: 835 ALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVK 894
I EP F +A W EAM EI ALE N TW + DLP G K I +KWVY++K
Sbjct: 978 MAAILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLK 1037
Query: 895 RNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVD 954
N DGTL R+KARLV G +Q EG+D+ +TF+PVAKLTTVR ILA+AA+++W +HQ+DV
Sbjct: 1038 YNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVH 1097
Query: 955 NAFLHGNLDEDVYMTIPAGVPSVKPNQVCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQ 1014
NAFLHG+L+E+VYM +P G P++VC+L KSLYGLKQA R W+ KLS L +GF Q
Sbjct: 1098 NAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQ 1157
Query: 1015 TASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIKDLGVLKYFLG 1074
+ D+SLF G + +LVYVDD+I+ GN + K LH+ F +KDLG LKYFLG
Sbjct: 1158 SYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLG 1217
Query: 1075 LEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDPSIRLSQEQGKPYDDPAAYRRL 1134
LEV+ G L QRKY LD+++ETG LG KP A P+ + +L+ G + +P YRRL
Sbjct: 1218 LEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRL 1277
Query: 1135 VGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRVLRYLKASPGLGLLFPRNSTIN 1194
VGR +YLT TRPD+S+A LSQ+M P+ H++AA R++RYLK SP G+ +S++
Sbjct: 1278 VGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLI 1337
Query: 1195 IQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYRALAYATCEL 1254
I Y D+D+ CP TRRS+S Y Y+G S +SWK KKQ TVS SS EAEYRA+AY EL
Sbjct: 1338 INAYCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKEL 1397
Query: 1255 QWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHERTKHLDIDCHVVREKLQAGILK 1314
+WL LL+DL V ++ L CD+++A+HIAANPVFHERTKH++ DCH VR+ + ++
Sbjct: 1398 KWLKALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLIT 1457
Query: 1315 LLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
I T QVAD+ TK+L F+ + L +
Sbjct: 1458 TEHIYTEDQVADLLTKSLPRPTFERLLSTLGV 1489
>At1g70010 hypothetical protein
Length = 1315
Score = 787 bits (2033), Expect = 0.0
Identities = 406/937 (43%), Positives = 580/937 (61%), Gaps = 42/937 (4%)
Query: 418 LWHFRLGHLSHDRLLALHTVQNSISVSKS--IVCDVCHLAKQKRKMFTVSVSKAQKCFDL 475
LWH RLGH S +L + ++ + + C VCH++KQK F +K+ + FDL
Sbjct: 406 LWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDL 465
Query: 476 VHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQI 535
+H+D WGP + + ++YFLT++DDYSR WV LL NK +V + F+T+V+ QF
Sbjct: 466 IHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETT 525
Query: 536 VKAIRSDNGPEFLLPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSKLP 595
+K +RSDN PE FY ++GIV SC TPQQN VERKHQHILN+AR+L FQS +P
Sbjct: 526 IKGVRSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIP 585
Query: 596 KKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNRSK 655
W +L AV+L+NR+P+ +L++K P+E+L + + +KVFG LC+A+T +R K
Sbjct: 586 ISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHK 645
Query: 656 LDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSNSPAWTCLDLQT 715
PRA+ C F+GY G KGY L+DL T I +SR V+FHE + P+ GS DL
Sbjct: 646 FSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGS--------DLSQ 697
Query: 716 QAESTADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEI-PNTQTVDEIP 774
+ ++ LN +Q D H PS +S EI P+ + +P
Sbjct: 698 EEQNFFPDLNPTPPMQRQSSD---------------HVNPSDSSSSVEILPSANPTNNVP 742
Query: 775 QPGSITAEGEVEVRRSTRPLKRPVHLANFQFSALPIRSSTAHSIVHHYSDERLSTAHRAY 834
+P V+ S R K+P +L ++ + + SST H I S +R++ + +
Sbjct: 743 EPS---------VQTSHRKAKKPAYLQDYYCHS--VVSSTPHEIRKFLSYDRINDPYLTF 791
Query: 835 ALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVK 894
+ + +EPS + EA K WR+AM AE LE TW++ LP + IG +W++++K
Sbjct: 792 LACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIK 851
Query: 895 RNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVD 954
N DG++ RYKARLVA+GY Q EG+DY +TFSPVAKL +V+++L +AA L QLD+
Sbjct: 852 YNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDIS 911
Query: 955 NAFLHGNLDEDVYMTIPAGVPS-----VKPNQVCKLLKSLYGLKQASRKWYEKLSAHLET 1009
NAFL+G+LDE++YM +P G S + PN VC+L KSLYGLKQASR+WY K S+ L
Sbjct: 912 NAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLG 971
Query: 1010 LGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIKDLGVL 1069
LGF Q+ DH+ F+K F +LVY+DD+I+ N ++K + F ++DLG L
Sbjct: 972 LGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGEL 1031
Query: 1070 KYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDPSIRLSQEQGKPYDDPA 1129
KYFLGLE+ S GI + QRKY LDLL ETG LG KP + P+DPS+ + + G + +
Sbjct: 1032 KYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVG 1091
Query: 1130 AYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRVLRYLKASPGLGLLFPR 1189
YRRL+GRL+YL TRPDI+ A +L+Q+ P H +A ++L+Y+K + G GL +
Sbjct: 1092 PYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSA 1151
Query: 1190 NSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYRALAY 1249
S + ++ Y++AD+ C D+RRS SGYC ++G SL+ WK++KQ VS+SS EAEYR+L+
Sbjct: 1152 TSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSV 1211
Query: 1250 ATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHERTKHLDIDCHVVREKLQ 1309
AT EL WL L++L+V + +LFCDN++A+HIA N VFHERTKH++ DCH VRE+L
Sbjct: 1212 ATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLL 1271
Query: 1310 AGILKLLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
G+ +L I T LQ+AD FTK L P F +K+ +
Sbjct: 1272 KGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGL 1308
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 748 bits (1931), Expect = 0.0
Identities = 411/955 (43%), Positives = 582/955 (60%), Gaps = 45/955 (4%)
Query: 418 LWHFRLGHLSHDRLLALHTVQNSISVSKSIV---CDVCHLAKQKRKMFTVSVSKAQKCFD 474
LWH R+GH + R+++L ++S+SVS + + CDVCH AKQ R F +S++K + F+
Sbjct: 391 LWHSRMGHPAA-RVVSL-IPESSVSVSSTHLNKACDVCHRAKQTRNSFPLSINKTLRIFE 448
Query: 475 LVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQ 534
L++ D+WGP S +YFLT++DDYSR VW+ LLN+K E +KNF + QF
Sbjct: 449 LIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFNV 508
Query: 535 IVKAIRSDNGPEFL-LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSK 593
+K +RSDNG EFL L F+ QG++H++SCV+TP++N RVERKH+H+LN+ARAL FQ+
Sbjct: 509 KIKTVRSDNGTEFLCLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQAN 568
Query: 594 LPKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNR 653
LP + W VL A +L+NR PS +L + +PYE L+++ + ++VFGSLC+A
Sbjct: 569 LPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLRVFGSLCYAHNRNRGG 628
Query: 654 SKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSNSPAWTCLDL 713
K R+R+C+F+GY G KG+ L DL E F+SRDV+F E P++ S+ ++
Sbjct: 629 DKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEFPFRISHEQ--NVIEE 686
Query: 714 QTQAESTADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEIPNTQTVDE- 772
+ +A A ++ E + G + TP + + PS S E + +D
Sbjct: 687 EEEA-LWAPIVDGLIEEEVHLGQNAGPTPPICVSSPIS---PSATSSRSEHSTSSPLDTE 742
Query: 773 -IPQPGSITAEGEVEVRRSTRPLKRPVHLANFQFSALP-IRSSTAHSIVHHY--SDERLS 828
+P P + ST P N QF L + +TA ++ R S
Sbjct: 743 VVPTPAT-----------STTSASSPSSPTNLQFLPLSRAKPTTAQAVAPPAVPPPRRQS 791
Query: 829 TAHRA-------YALNIAQDQE-PSTFAEANKDLHWREAMQ---------AEIKALEKNG 871
T ++A + +N QE PS L R+ + I A E+N
Sbjct: 792 TRNKAPPVTLKDFVVNTTVCQESPSKLNSILYQLQKRDDTRRFSASHTTYVAIDAQEENH 851
Query: 872 TWKLVDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKL 931
TW + DLP G + IG++WVY+VK N DG++ RYKARLVA G Q EG DY +TF+PVAK+
Sbjct: 852 TWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAPVAKM 911
Query: 932 TTVRVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVPSVKPNQVCKLLKSLYG 991
TVR+ L +A +NW +HQ+DV NAFLHG+L E+VYM +P G + PN+VC+L K+LYG
Sbjct: 912 ATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVCRLRKALYG 971
Query: 992 LKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQ 1051
LKQA R W+EKL+ L+ GF+Q+ +D+SLF +GS +L+YVDD+I+ GN+ Q
Sbjct: 972 LKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIITGNSQRATQ 1031
Query: 1052 LVKDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPL 1111
K+ L F +KDLG LKYFLG+EVA ST+GI +CQRKY LD++ ETG LG KP PL
Sbjct: 1032 QFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKPANFPL 1091
Query: 1112 DPSIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQ 1171
+ + +L DP YRRLVGRL+YL TR D++ + L+++M P + H+ AA
Sbjct: 1092 EQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDHWAAAL 1151
Query: 1172 RVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKK 1231
RV+RYLKA PG G+ R+ I G+ D+DWAG P +RRS++GY G S +SWK KK
Sbjct: 1152 RVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFGDSPISWKTKK 1211
Query: 1232 QTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFH 1291
Q TVS+SS EAEYRA+++ EL WL LL L V+ ++ CD++SA++IA NPVFH
Sbjct: 1212 QDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSAIYIATNPVFH 1271
Query: 1292 ERTKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
ERTKH++ID H VR++ G++ + TT Q+AD+FTK L F F KL +
Sbjct: 1272 ERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFSAFRIKLGI 1326
>At4g17450 retrotransposon like protein
Length = 1433
Score = 732 bits (1889), Expect = 0.0
Identities = 411/1001 (41%), Positives = 573/1001 (57%), Gaps = 96/1001 (9%)
Query: 366 EVQTQRRIGLGSLQPDELYHLVVSSSSSTCFSIQHSSTS--EINDFGHIIPPGALWHFRL 423
E+ + IG GS Q LY L + ++ T S++ +++ E + ++ WH RL
Sbjct: 500 ELTKELMIGRGS-QVGNLYVLDFNENNHTV-SLKGTTSMCPEFSVCSSVVVDSVTWHKRL 557
Query: 424 GHLSHDRLLALHTVQNSISVSK--------SIVCDVCHLAKQKRKMFTVSVSKAQKCFDL 475
GH ++ ++ L V N + V K VC VCHL+KQK F + FDL
Sbjct: 558 GHPAYSKIDLLSDVLN-LKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAAFDL 616
Query: 476 VHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQI 535
VH+D WGP + + + W+ LL NK +V FI +V TQ+
Sbjct: 617 VHIDTWGPFSVPT--------------NDATWIYLLKNKSDVLHVFPAFINMVHTQYQTK 662
Query: 536 VKAIRSDNGPEFLLPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSKLP 595
+K++RSDN E ++A GIV SC TP+QN VERKHQHILN+ARALLFQS +P
Sbjct: 663 LKSVRSDNAHELKFTDLFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIP 722
Query: 596 KKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNRSK 655
+ W VL AVFL+NR+P+ +L NKSPYE L E +K FG LC+++T R K
Sbjct: 723 LEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHK 782
Query: 656 LDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSNSPAWTCLDLQT 715
+PRAR C+FLGY G KGY L+D+ T + ISR VIFHE + P+ S
Sbjct: 783 FEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPFISS------------ 830
Query: 716 QAESTADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMP--SGASIEDEIPNTQT--VD 771
+I+D ++ P + D++P QT +D
Sbjct: 831 -----------------------------TIKDDIKDFFPLLQFPARTDDLPLEQTSIID 861
Query: 772 EIPQPGSITAEGEVEVRR-STRPLKRPVHLANFQFSALPIRSSTAHSIVHHYSDERLSTA 830
P +++ V S R K P HL +F H Y++ +
Sbjct: 862 THPHQDVSSSKALVPFDPLSKRQKKPPKHLQDF----------------HCYNNT--TEP 903
Query: 831 HRAYALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPIGNKWV 890
A+ NI P ++EA W +AM+ EI A+ + TW +V LP K IG KWV
Sbjct: 904 FHAFINNITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWV 963
Query: 891 YRVKRNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQ 950
+ +K N DG++ RYKARLVAKGY Q EGLDY +TFSPVAKLT+VR++L LAA W +HQ
Sbjct: 964 FTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQ 1023
Query: 951 LDVDNAFLHGNLDEDVYMTIPAGVP-----SVKPNQVCKLLKSLYGLKQASRKWYEKLSA 1005
LD+ NAFL+G+LDE++YM IP G ++ P+ +C+L KS+YGLKQASR+WY KLS
Sbjct: 1024 LDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSN 1083
Query: 1006 HLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIKD 1065
L+ +GF+++ +DH+LF+K+ G+LVYVDD+++ N+ L F ++D
Sbjct: 1084 TLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRD 1143
Query: 1066 LGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDPSIRLSQEQGKPY 1125
LG KYFLG+E+A S GIS+CQRKY L+LL TG LGSKP + PLDPS++L++E G P
Sbjct: 1144 LGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPL 1203
Query: 1126 DDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRVLRYLKASPGLGL 1185
D +YR+LVG+L+YL TRPDI++A L Q+ P H A +VLRYLK + G GL
Sbjct: 1204 TDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGL 1263
Query: 1186 LFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYR 1245
+ + +++GY+D+D+ C D+RR ++ YC +IG LVSWK+KKQ TVS S+ EAE+R
Sbjct: 1264 FYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFR 1323
Query: 1246 ALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHERTKHLDIDCHVVR 1305
A++ T E+ WL L D KV L+CDN +ALHI N VFHERTK +++DC+ R
Sbjct: 1324 AMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTR 1383
Query: 1306 EKLQAGILKLLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
E +++G LK + + T QVAD TKA+ P F K+ +
Sbjct: 1384 EAVESGFLKTMFVETGEQVADPLTKAIHPAQFHKLIGKMGV 1424
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 635 bits (1638), Expect = 0.0
Identities = 355/942 (37%), Positives = 525/942 (55%), Gaps = 48/942 (5%)
Query: 418 LWHFRLGHLSHDRLLALHTVQNS--ISVSKSI---VCDVCHLAKQKRKMFTVSVSKAQKC 472
+WH RLGH + AL +QNS I ++KS VC+ C + K R F +S S+
Sbjct: 455 VWHHRLGHANSK---ALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHP 511
Query: 473 FDLVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQF 532
D +H D+WGP S KY+ +DDYSR+ W L+NK E +F LV+ Q
Sbjct: 512 LDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQL 571
Query: 533 GQIVKAIRSDNGPEFL---LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALL 589
+K +SD G EF+ L S GI H+ SC TPQQNG ERKH+H++ + ++L
Sbjct: 572 NTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSML 631
Query: 590 FQSKLPKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTL 649
F S P+K W S A +++NR+PS +LKN SPYE L+ E D ++VFGS C+
Sbjct: 632 FHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLR 691
Query: 650 TNNRSKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKG---SNSP 706
++K DPR+ +C+FLGY KGY T +++ISR+VIF+E LP+K S P
Sbjct: 692 PLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVYISRNVIFNESELPFKEKYQSLVP 751
Query: 707 AWTCLDLQTQAESTADKLNV-ASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEIP 765
++ LQ + +++V A+ +Q ++T S V ++ +
Sbjct: 752 QYSTPLLQAWQHNKISEISVPAAPVQLFSKPIDLNTYAGS---QVTEQLTDPEPTSNNEG 808
Query: 766 NTQTVDEIPQPGSITAEGEVEVRRSTRPLKRPVHLANFQFSALPIRSSTAHSIVHHYSDE 825
+ + V+ + + + E + T K + N +++ + R +TA
Sbjct: 809 SDEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTA---------- 858
Query: 826 RLSTAHRAYALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPI 885
EP T A A K W EA+ EI + TW LV + + +
Sbjct: 859 -----------------EPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNIL 901
Query: 886 GNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVILALAASQN 945
+KWV++ K + DG++ + KARLVAKG++Q EG+DY +TFSPV + T+R++L ++ S+
Sbjct: 902 SSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKG 961
Query: 946 WHLHQLDVDNAFLHGNLDEDVYMTIPAG-VPSVKPNQVCKLLKSLYGLKQASRKWYEKLS 1004
W + QLDV NAFLHG L E V+M P+G + KP VC+L K++YGLKQA R W++ S
Sbjct: 962 WPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFS 1021
Query: 1005 AHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIK 1064
L GF + SD SLFV Q LL+YVDD++L G+ + + + +L F +K
Sbjct: 1022 NFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMK 1081
Query: 1065 DLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDPSIRLSQEQGKP 1124
DLG +YFLG+++ +G+ L Q Y D+LQ+ G P+ TPL +L +
Sbjct: 1082 DLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQ--QLDNLNSEL 1139
Query: 1125 YDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRVLRYLKASPGLG 1184
+ +P +R L G+L YLT TRPDI A + Q M +P F +R+LRY+K + G+G
Sbjct: 1140 FAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMG 1199
Query: 1185 LLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQTTVSRSSNEAEY 1244
L RNST+ + YSD+D AGC +TRRS +G+C +G +L+SW AK+Q TVS SS EAEY
Sbjct: 1200 LPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEY 1259
Query: 1245 RALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHERTKHLDIDCHVV 1304
RAL YA E+ W+ +LL+DL + ++CDN SA++++ANP H R+KH D D H +
Sbjct: 1260 RALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYI 1319
Query: 1305 REKLQAGILKLLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
RE++ G+++ I T Q+ADVFTK+L R F +KL +
Sbjct: 1320 REQVALGLIETQHISATFQLADVFTKSLPRRAFVDLRSKLGV 1361
>At4g10690 retrotransposon like protein
Length = 1515
Score = 591 bits (1524), Expect = e-169
Identities = 359/977 (36%), Positives = 523/977 (52%), Gaps = 60/977 (6%)
Query: 418 LWHFRLGHLSHDRLLAL-HTVQNSISVSKSIVCDVCHLAKQKRKMFTVSVSKAQKCFDLV 476
+WH RLGH + + L L T ++ + S +C+ C + K R F S + + + +
Sbjct: 457 VWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRLPFVASEFVSSRPLERI 516
Query: 477 HMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQIV 536
H D+WGP S +Y++ +D+YSRF W L K + F LV+ Q+ +
Sbjct: 517 HCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHKI 576
Query: 537 KAIRSDNGPEFL---LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSK 593
+ D G EF+ A ++ GI SC TPQQNG ER+H+++ + +L+F SK
Sbjct: 577 AMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHSK 636
Query: 594 LPKKMWCYSVLHAVFLMNRIPSKLLK-NKSPYELLYREAVDLEMMKVFGSLCFATTLTNN 652
+P K+W + + FL N +PS L NKSPYE+L+ ++VFGS C+
Sbjct: 637 VPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPYA 696
Query: 653 RSKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKG--------SN 704
++K DP++ C+FLGY KGY + T +++I R V+F E PY S
Sbjct: 697 KNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQTISG 756
Query: 705 SP---AW------TCLDLQTQAESTADKLNVASEIQSAKGDASVSTPCA----------S 745
SP AW T L +T + + D + SA +SV T CA
Sbjct: 757 SPLFTAWQKGFSSTALSRETPSTNVEDII-----FPSATVSSSVPTGCAPNIAETATAPD 811
Query: 746 IEDGVQHEM--PSGASIEDEIPNTQTVDEIPQPGSITAEGEVEVRRSTRPLKRPVHLANF 803
++ H+M P +P TQ + + + E + + P + ++++ F
Sbjct: 812 VDVAAAHDMVVPPSPITSTSLP-TQPEESTSDQNHYSTDSETAISSAMTP--QSINVSLF 868
Query: 804 QFSALP-----IRSSTAHSIVHHYSDER----LSTAHRAYALNIAQDQ--EPSTFAEANK 852
+ S P I S+TA H R ++ + YAL + EP + EA K
Sbjct: 869 EDSDFPPLQSVISSTTAAPETSHPMITRAKSGITKPNPKYALFSVKSNYPEPKSVKEALK 928
Query: 853 DLHWREAMQAEIKALEKNGTWKLVDLPEGV-KPIGNKWVYRVKRNVDGTLARYKARLVAK 911
D W AM E+ + + TW LV PE V + +G KWV++ K N DG+L R KARLVA+
Sbjct: 929 DEGWTNAMGEEMGTMHETDTWDLVP-PEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVAR 987
Query: 912 GYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIP 971
GY Q EG+DY +T+SPV + TVR IL +A W L QLDV NAFLH L E V+MT P
Sbjct: 988 GYEQEEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQP 1047
Query: 972 AGV--PSVKPNQVCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSS 1029
G PS +P+ VCKL K++Y LKQA R W++K S++L GF + SD SLFV +G
Sbjct: 1048 PGFEDPS-RPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRD 1106
Query: 1030 FTGLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQR 1089
LL+YVDD+IL GN Q + + L F +KD+G L YFLG++ + G+ L Q
Sbjct: 1107 VMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQAHYHNDGLFLSQE 1166
Query: 1090 KYCLDLLQETGTLGSKPVATPLDPSIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDIS 1149
KY DLL G + TPL + L Q KP+ +P +RRL G+L YLT TRPDI
Sbjct: 1167 KYTSDLLVNAGMSDCSSMPTPLQ--LDLLQGNNKPFPEPTYFRRLAGKLQYLTLTRPDIQ 1224
Query: 1150 HATQQLSQYMSNPMDGHFKAAQRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDT 1209
A + Q M P F +R+L YLK + +G+ N+ ++ YSD+DWAGC DT
Sbjct: 1225 FAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRCYSDSDWAGCKDT 1284
Query: 1210 RRSISGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCT 1269
RRS G+C ++G +++SW AK+ TVS+SS EAEYR L++A E+ W+ +LLQ++ +
Sbjct: 1285 RRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWIGFLLQEIGLPQQ 1344
Query: 1270 ATPVLFCDNQSALHIAANPVFHERTKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFT 1329
P ++CDN SA++++ANP H R+KH +D + VRE++ G L + IP + Q+AD+FT
Sbjct: 1345 QIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKHIPASQQLADIFT 1404
Query: 1330 KALQPRVFQGFATKLAM 1346
K+L F KL +
Sbjct: 1405 KSLPQAPFCDLRFKLGV 1421
>At3g25450 hypothetical protein
Length = 1343
Score = 570 bits (1468), Expect = e-162
Identities = 338/962 (35%), Positives = 522/962 (54%), Gaps = 61/962 (6%)
Query: 381 DELYHLVVSSSSSTCFSIQHSSTSEINDFGHIIPPGALWHFRLGHLSHDRLLALHTVQNS 440
+ LY + + +S C +Q ++T+E +WH RLGH+S + + A+ +
Sbjct: 399 NRLYKVSLEVENSKC--LQLTTTNE----------STIWHARLGHISFETIKAMIKKELV 446
Query: 441 ISVSKSI-----VCDVCHLAKQKRKMFTVSVS-KAQKCFDLVHMDIWGPLAQASVHNHKY 494
I +S S+ C C KQ R F + S +A + +L+H D+ GP++ ++ +Y
Sbjct: 447 IGISSSVPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRY 506
Query: 495 FLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQIVKAIRSDNGPEFL---LPA 551
++DD+SR++W +LL K E + K F LV+ + G I+K R+D G EFL
Sbjct: 507 VFVLIDDHSRYMWSILLKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQE 566
Query: 552 FYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSKLPKKMWCYSVLHAVFLMN 611
F + +GI + TPQQNG VER+++ +L + R++L +P +W +V H+ +L+N
Sbjct: 567 FCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLIN 626
Query: 612 RIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNRSKLDPRARKCIFLGYKQG 671
R+ ++ L N++PYE+ + ++E ++VFG + +A N KLD R+R ++LG + G
Sbjct: 627 RVGTRSLSNQTPYEVFKHKKPNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPG 686
Query: 672 MKGYVLMDLITQEIFISRDVIFHEHVLPYKGSNSPAWTCLDLQTQAESTADKLNVASEIQ 731
K Y L+D + IF+SRDV+F E + S W +T ES + ++
Sbjct: 687 SKAYRLLDPTKRRIFVSRDVVFDE-------NRSWMWQESSSETDKESGTFTITLSEFGN 739
Query: 732 SAKGDASVSTPCASIEDGVQHEMPSGASIEDEIPNTQTVDEIPQPGSITAEGEVEVRRST 791
+ + +ST E+ + E E E PQP VRRS
Sbjct: 740 NGVTENDISTEPEETEEAEINGEDENIIEEAETEEHDQSQEEPQP----------VRRSQ 789
Query: 792 RPLKRPVHLANFQFSALPIRSSTAHSIVHHYSDERLSTAHRAYALNIAQDQEPSTFAEAN 851
R + RP +L ++ A + H A+N EP F EAN
Sbjct: 790 RQVIRPNYLKDYVLCA------------------EIEAEHLLLAVN----DEPWDFKEAN 827
Query: 852 KDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAK 911
K WR+A + EI+++EKN TW LVDLP G K IG KWV+++K N DG++ +YKARLVAK
Sbjct: 828 KSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVKWVFKLKHNSDGSINKYKARLVAK 887
Query: 912 GYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIP 971
GY Q G+D+ + F+PVA++ TVR+I+ALAAS W +H LDV AFLHG L EDVY++ P
Sbjct: 888 GYVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELREDVYVSQP 947
Query: 972 AGVPSVKPNQ-VCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSF 1030
G + + + V KL K+LYGL+QA R W KL+ L+ L F++ + SL+ K +G +
Sbjct: 948 EGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEPSLYRKQEGENI 1007
Query: 1031 TGLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRK 1090
+ VYVDD+++ G+ + K + F + DLG L Y+LG+EV S GI+L Q +
Sbjct: 1008 LVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQER 1067
Query: 1091 YCLDLLQETGTLGSKPVATPLDPSIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISH 1150
Y +L+E G V TP+ S+ LS+ Q + D YRR +G L YL TRPD+S+
Sbjct: 1068 YAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSY 1127
Query: 1151 ATQQLSQYMSNPMDGHFKAAQRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTR 1210
LS+Y+ P + H A +++LRYL+ + GL F + + GYSD+ D
Sbjct: 1128 NVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDG 1187
Query: 1211 RSISGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTA 1270
+S G+ FY+ ++W ++KQ V+ SS EAE+ A A + WL LL ++ T
Sbjct: 1188 KSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVIGTECE 1247
Query: 1271 TPVLFCDNQSALHIAANPVFHERTKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTK 1330
+ DN+SA+ + NPVFH R+KH+ H +RE ++ G +++ +P Q AD+ TK
Sbjct: 1248 KVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVEHVPGVRQKADILTK 1307
Query: 1331 AL 1332
AL
Sbjct: 1308 AL 1309
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 566 bits (1459), Expect = e-161
Identities = 302/701 (43%), Positives = 430/701 (61%), Gaps = 49/701 (6%)
Query: 668 YKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSNSPAWTC-------LDLQTQAEST 720
Y G KGY ++DL + I I+R+V+FHE P+K S + L L
Sbjct: 335 YPSGYKGYKVLDLESHSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFV 394
Query: 721 ADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEIPNTQTVDEIPQPGSIT 780
+ + + ++++ +AS S +S +PS NTQ D +
Sbjct: 395 -ESMPLDDDLRADDNNASTSNSASSASS--IPPLPSTV-------NTQNTDALD-----I 439
Query: 781 AEGEVEVRRSTRPLKRPVHLANFQFSALPIRSS----------------------TAHSI 818
V + R R K P +L+ + +++P SS T + +
Sbjct: 440 DTNSVPIARPKRNAKAPAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPM 499
Query: 819 VHHYSDERLSTAHRAYALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDL 878
S ++L+ +Y + EP F +A K W A E+ ALE+N TW + L
Sbjct: 500 STAISYDKLTPLFHSYICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESL 559
Query: 879 PEGVKPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVIL 938
EG +G KWV+ +K N DG++ RYKARLVA+G+ Q EG+DY +TFSPVAK +V+++L
Sbjct: 560 TEGKNVVGCKWVFTIKYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLL 619
Query: 939 ALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVP-----SVKPNQVCKLLKSLYGLK 993
LAA+ W L Q+DV NAFLHG LDE++YM++P G S+ VC+LLKSLYGLK
Sbjct: 620 GLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLK 679
Query: 994 QASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLV 1053
QASR+WY++LS+ F Q+ +D+++FVK +S +LVYVDD+++ N + + +
Sbjct: 680 QASRQWYKRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENL 739
Query: 1054 KDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDP 1113
K+ L F IKDLG ++FLGLE+A S+ GIS+CQRKY +LL++ G G KP + P+DP
Sbjct: 740 KELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDP 799
Query: 1114 SIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRV 1173
++ L++E G + +YR LVGRLLYL TRPDI+ A LSQ++S P D H +AA +V
Sbjct: 800 NLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKV 859
Query: 1174 LRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQT 1233
LRYLK +PG GL++ +S + + G+SDADW C D+RRS++G+C Y+G SL++WK+KKQ+
Sbjct: 860 LRYLKGNPGQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQS 919
Query: 1234 TVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHER 1293
VSRSS E+EYR+LA ATCE+ WL LL+DL VT T LFCDN+SALH+A NPVFHER
Sbjct: 920 VVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHER 979
Query: 1294 TKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTKALQP 1334
TKH++IDCH VR++++AG LK L +PT Q+AD+ TK L P
Sbjct: 980 TKHIEIDCHTVRDQIKAGKLKTLHVPTGNQLADILTKPLHP 1020
Score = 84.7 bits (208), Expect = 3e-16
Identities = 47/121 (38%), Positives = 66/121 (53%), Gaps = 13/121 (10%)
Query: 490 HNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQIVKAIRSDNGPEFLL 549
+ + YFLT++DD +R WV ++ NK EV F+ L+ TQ+ +KAIRSDN E
Sbjct: 248 YRNLYFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKELAF 307
Query: 550 PAFYSAQGIVHQKSCVSTPQQNGRVER------------KHQHILNIARALLF-QSKLPK 596
F QG++HQ SC TPQQN VER H ++I R ++F ++K P
Sbjct: 308 TKFVKEQGMIHQFSCAYTPQQNSVVERYPSGYKGYKVLDLESHSISITRNVVFHETKFPF 367
Query: 597 K 597
K
Sbjct: 368 K 368
>At4g23160 putative protein
Length = 1240
Score = 527 bits (1358), Expect = e-149
Identities = 267/557 (47%), Positives = 369/557 (65%), Gaps = 17/557 (3%)
Query: 756 SGASIEDEIPNTQTVDEIPQPGSITAEGEVEVRRSTRPLKRPVHLANFQFSALPIRSSTA 815
S +SI D +P+ +++P+P V S R ++P +L ++ + + S T
Sbjct: 10 SSSSI-DIMPSANIQNDVPEPS---------VHTSHRRTRKPAYLQDYYCHS--VASLTI 57
Query: 816 HSIVHHYSDERLSTAHRAYALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKL 875
H I S E++S + ++ + IA+ +EPST+ EA + L W AM EI A+E TW++
Sbjct: 58 HDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEI 117
Query: 876 VDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVR 935
LP KPIG KWVY++K N DGT+ RYKARLVAKGY Q EG+D+ +TFSPV KLT+V+
Sbjct: 118 CTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVK 177
Query: 936 VILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVP-----SVKPNQVCKLLKSLY 990
+ILA++A N+ LHQLD+ NAFL+G+LDE++YM +P G S+ PN VC L KS+Y
Sbjct: 178 LILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIY 237
Query: 991 GLKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEF 1050
GLKQASR+W+ K S L GF Q+ SDH+ F+K + F +LVYVDD+I+ N
Sbjct: 238 GLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAV 297
Query: 1051 QLVKDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATP 1110
+K L F ++DLG LKYFLGLE+A S +GI++CQRKY LDLL ETG LG KP + P
Sbjct: 298 DELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVP 357
Query: 1111 LDPSIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAA 1170
+DPS+ S G + D AYRRL+GRL+YL TR DIS A +LSQ+ P H +A
Sbjct: 358 MDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAV 417
Query: 1171 QRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAK 1230
++L Y+K + G GL + + + +Q +SDA + C DTRRS +GYC ++G SL+SWK+K
Sbjct: 418 MKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSK 477
Query: 1231 KQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVF 1290
KQ VS+SS EAEYRAL++AT E+ WL ++L++ + +LFCDN +A+HIA N VF
Sbjct: 478 KQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVF 537
Query: 1291 HERTKHLDIDCHVVREK 1307
HERTKH++ DCH VRE+
Sbjct: 538 HERTKHIESDCHSVRER 554
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 525 bits (1351), Expect = e-149
Identities = 296/707 (41%), Positives = 403/707 (56%), Gaps = 46/707 (6%)
Query: 417 ALWHFRLGHLSHDRLLALHTVQNSISVSKSIVCDVCHLAKQKRKMFTVSVSKAQKCFDLV 476
ALWH RLGH S L +L S S CDVC AKQ R++F S +K+ CF L+
Sbjct: 511 ALWHQRLGHPSFSVLSSLPLFSGSSCSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLI 570
Query: 477 HMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQIV 536
H D+WGP S YFLT++DD+SR VW LL K EV+ + NF+ + QFG+ V
Sbjct: 571 HCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSV 630
Query: 537 KAIRSDNGPEFL-LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSKLP 595
K IRSDNG EF+ L +++ QGIVHQ SCV TPQQNGRVERKH+HILN++RALLFQ+ LP
Sbjct: 631 KIIRSDNGTEFMCLSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHILNVSRALLFQASLP 690
Query: 596 KKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNRSK 655
K W +V+ A +L+NR PS + SPYELL+ D + ++VFGS C+A +T ++ K
Sbjct: 691 IKFWGEAVMTAAYLINRTPSSIHNGLSPYELLHGCKPDYDQLRVFGSACYAHRVTRDKDK 750
Query: 656 LDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSN-----SPAWTC 710
R+R CIF+GY G KG+ + DL T E +SRDV+F E+V PY + +P TC
Sbjct: 751 FGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYATNEGDTIYTPPVTC 810
Query: 711 LDLQTQAESTADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMPSG--ASIEDEI-PNT 767
+ L ++ D V S E +H+ P ++D + P+T
Sbjct: 811 PITYDEDWLPFTTLEDRGSDENYLSDPPVCVTNVS-ESDTEHDTPQSLPTPVDDPLSPST 869
Query: 768 Q-TVDEIPQPGSITAEGEVEV----------------RRSTRPLKRPVHLANF------- 803
T + P S + V R+ R +++P L ++
Sbjct: 870 SVTPTQTPTNSSSSTSPSTNVSPPQQDTTPIIENTPPRQGKRQVQQPARLKDYILYNASC 929
Query: 804 ------------QFSALPIRSSTAHSIVHHYSDERLSTAHRAYALNIAQDQEPSTFAEAN 851
S+ I+ + + + + SDE S H+ + I + EP F E
Sbjct: 930 TPNTPHVLSPSTSQSSSSIQGNLQYPLTDYISDECFSAGHKVFLAAITANDEPKHFKEDV 989
Query: 852 KDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAK 911
K W +AM E+ ALE N TW +VDLP G IG++WVY+ K N DGT+ RYKARLV +
Sbjct: 990 KVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERYKARLVVQ 1049
Query: 912 GYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIP 971
G NQ+EG DY +TF+PV K+TTVR +L L A+ W ++Q+DV NAFLHG+L+E+VYM +P
Sbjct: 1050 GNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLP 1109
Query: 972 AGVPSVKPNQVCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFT 1031
G P++VC+L KSLYGLKQA R W++KLS L+ GF Q D+S F
Sbjct: 1110 PGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIEL 1169
Query: 1032 GLLVYVDDVILFGNTVTEFQLVKDSLHQAFGIKDLGVLKYFLGLEVA 1078
+LVYVDD+I+ GN Q K+ L + F +KDLG LKYFLG+EV+
Sbjct: 1170 RVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIEVS 1216
Score = 186 bits (473), Expect = 6e-47
Identities = 92/193 (47%), Positives = 131/193 (67%)
Query: 1154 QLSQYMSNPMDGHFKAAQRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSI 1213
++S+ P + H +AA R++RYLK SPG G+L N + ++ Y D+D+ CP TRRS+
Sbjct: 1214 EVSRGPDAPREAHLEAAMRIVRYLKGSPGQGILLSANKDLTLEVYCDSDFQSCPLTRRSL 1273
Query: 1214 SGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPV 1273
S Y +G S +SWK KKQ TVS SS EAEYRA++ A E++WL LL++L +T A
Sbjct: 1274 SAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTR 1333
Query: 1274 LFCDNQSALHIAANPVFHERTKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTKALQ 1333
LFCD+++A+ IAANPVFHERTKH++ DCH VR+ ++ GI+ + T+ Q+AD+FTKAL
Sbjct: 1334 LFCDSKAAISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQLADIFTKALG 1393
Query: 1334 PRVFQGFATKLAM 1346
F +KL +
Sbjct: 1394 RNQFIYLMSKLGI 1406
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 513 bits (1321), Expect = e-145
Identities = 253/524 (48%), Positives = 357/524 (67%)
Query: 823 SDERLSTAHRAYALNIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDLPEGV 882
S R +++H+A+ + EP+T+ EA D WREAM AEI++L N T+ +V+LP G
Sbjct: 579 SCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGK 638
Query: 883 KPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVILALAA 942
+ +GNKWVY++K DG + RYKARLV G Q EG+DY +TF+PVAK++TVR+ L +AA
Sbjct: 639 RALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAA 698
Query: 943 SQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVPSVKPNQVCKLLKSLYGLKQASRKWYEK 1002
+++WH+HQ+DV NAFLHG+L E+VYM +P G P++VC+L KSLYGLKQA R W+ K
Sbjct: 699 ARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSK 758
Query: 1003 LSAHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTEFQLVKDSLHQAFG 1062
LS+ L+ GF Q+ SD+SLF F +LVYVDD+I+ G+ K L F
Sbjct: 759 LSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFH 818
Query: 1063 IKDLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGTLGSKPVATPLDPSIRLSQEQG 1122
+KDLG+LKYFLG+EV+ + G L QRKY LD++ E G LG++P A PL+ + +LS
Sbjct: 819 MKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTS 878
Query: 1123 KPYDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSNPMDGHFKAAQRVLRYLKASPG 1182
D + YRRLVGRL+YL TRP++S++ L+Q+M NP H+ AA RV+RYLK++PG
Sbjct: 879 PLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPG 938
Query: 1183 LGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAKKQTTVSRSSNEA 1242
G+L ST+ I G+ D+D+A CP TRRS++GY +G + +SWK KKQ T+SRSS EA
Sbjct: 939 QGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTISRSSAEA 998
Query: 1243 EYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVFHERTKHLDIDCH 1302
EYRA+A+ T EL WL +L DL V+ +F D++SA+ ++ NPV HERTKH+++DCH
Sbjct: 999 EYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCH 1058
Query: 1303 VVREKLQAGILKLLPIPTTLQVADVFTKALQPRVFQGFATKLAM 1346
+R+ + GI+ +P+ Q+AD+ TKAL + + F KL +
Sbjct: 1059 FIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKLGI 1102
Score = 278 bits (712), Expect = 1e-74
Identities = 142/290 (48%), Positives = 189/290 (64%), Gaps = 6/290 (2%)
Query: 415 PGALWHFRLGHLSHDRLLALHTVQNSISVSKSI---VCDVCHLAKQKRKMFTVSVSKAQK 471
P LWH RLGH S D+++ L + +S K I VCD C AKQ R F + +++
Sbjct: 288 PFDLWHRRLGHAS-DKIVNL-LPRELLSSGKEILENVCDTCMRAKQTRDTFPLRDNRSMD 345
Query: 472 CFDLVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQ 531
F L+H D+WGP S +YFLT++DDYSR VWV L+ +K E Q+ +K+F+ LV+ Q
Sbjct: 346 SFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQ 405
Query: 532 FGQIVKAIRSDNGPEFL-LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLF 590
F +K +RSDNG EFL + ++ +GI H+ SCV TP QNGRVERKH+HILNIARAL F
Sbjct: 406 FDTEIKTVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRF 465
Query: 591 QSKLPKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLT 650
QS LP + W +L A +L+NR PS LL+ KSPYE+LY+ A ++VFGSLC+A
Sbjct: 466 QSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQN 525
Query: 651 NNRSKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPY 700
+ K R+R+C+F+GY G KG+ L DL Q+ F+SRDVIF E PY
Sbjct: 526 HKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPY 575
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 506 bits (1304), Expect = e-143
Identities = 301/891 (33%), Positives = 485/891 (53%), Gaps = 55/891 (6%)
Query: 449 CDVCHLAKQKRKMFTVSVS-KAQKCFDLVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVW 507
C C L KQ R+ F + + +A + +LVH D+ GP+ Q++ +Y L ++DD++R++W
Sbjct: 428 CGSCLLGKQARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMW 487
Query: 508 VVLLNNKGEVQQQVKNFITLVKTQFGQIVKAIRSDNGPEFLLPAFY---SAQGIVHQKSC 564
+LL K E ++ ++F T V+ + G +K R+D G EF+ F + +GI +
Sbjct: 488 SMLLKEKSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLTA 547
Query: 565 VSTPQQNGRVERKHQHILNIARALLFQSKLPKKMWCYSVLHAVFLMNRIPSKLLKNKSPY 624
TPQQNG VER+++ +L + R++L K+P +W +V H+ +++NR+ ++ L+N++PY
Sbjct: 548 PYTPQQNGVVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPY 607
Query: 625 ELLYREAVDLEMMKVFGSLCFATTLTNNRSKLDPRARKCIFLGYKQGMKGYVLMDLITQE 684
E+ + ++E ++VFG + +A + KLD R++ ++LG + G K Y L+D ++
Sbjct: 608 EVFKQRKPNVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRK 667
Query: 685 IFISRDVIFHEHVLPYKGSNSPAWTCLDLQTQAESTADKLNVASEIQSAKGDASVSTPCA 744
I W D +T+ S L + + S
Sbjct: 668 II--------------------KWNNSDSETRDISGTFSLTLG---EFGNNGIQESDDIE 704
Query: 745 SIEDGVQHEMPSGASIEDEIPNTQTVD-EIPQPGSITAEGEVEVRRSTRPLKRPVHLANF 803
+ ++G + E E+E + +D E QP T +RRSTR + +P +L
Sbjct: 705 TEKNGEESENSHEEEGENEHNEQEQIDAEETQPSHATP--LPTLRRSTRQVGKPNYL--- 759
Query: 804 QFSALPIRSSTAHSIVHHYSDERLSTAHRAYALNIAQDQEPSTFAEANKDLHWREAMQAE 863
D L + +A + EP F EANK WR+A + E
Sbjct: 760 -------------------DDYVLMAEIEGEQVLLAINDEPWDFKEANKLKEWRDACKEE 800
Query: 864 IKALEKNGTWKLVDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGLDYFD 923
I ++EKN TW L+DLP K IG KWV+++KRN DG++ +YKARLVAKGY Q G+DY +
Sbjct: 801 ILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDGSINKYKARLVAKGYVQRHGIDYDE 860
Query: 924 TFSPVAKLTTVRVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVPSVKPNQ-- 981
F+ VA++ T+RVI+ALAAS W +H LDV AFLHG L EDVY+T P G + K N+
Sbjct: 861 VFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGELREDVYVTQPEGFTN-KDNEGK 919
Query: 982 VCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVDDVI 1041
V KL K+LYGLKQA R W KL+ L+ L F + + + S++ + + + +YVDD++
Sbjct: 920 VYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVYRRQEEKKLLIVAIYVDDLL 979
Query: 1042 LFGNTVTEFQLVKDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQETGT 1101
+ G+++ K + F + DLG L Y+LG+EV H +GI L Q +Y + +++E G
Sbjct: 980 VTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRKNGIILRQERYAMKIIEEAGM 1039
Query: 1102 LGSKPVATPLDPSIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQYMSN 1161
PV P+ + L + Q + YRR++G L Y+ TRPD+S+ LS+Y+
Sbjct: 1040 SNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIGCLRYIVHTRPDLSYCVGVLSRYLQQ 1099
Query: 1162 PMDGHFKAAQRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIG 1221
P + H A ++VLRYLK + GL R + GYSD+ + D +S +G+ FY+
Sbjct: 1100 PRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLVGYSDSSHSADLDDGKSTAGHIFYLH 1159
Query: 1222 RSLVSWKAKKQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSA 1281
+ ++W ++KQ V+ SS EAE+ A A + WL L ++ T + ++ DN+SA
Sbjct: 1160 QCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLFAEVCGTTSEKVMIRVDNKSA 1219
Query: 1282 LHIAANPVFHERTKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTKAL 1332
+ + N VFH R+KH+ H +RE ++ ++++ +P Q AD+ TK L
Sbjct: 1220 IALTKNLVFHGRSKHIHRRYHFIRECVENNLVEVDHVPGVEQRADILTKPL 1270
>At1g36620 hypothetical protein
Length = 1152
Score = 501 bits (1291), Expect = e-142
Identities = 278/693 (40%), Positives = 409/693 (58%), Gaps = 48/693 (6%)
Query: 373 IGLGSLQPDELYHLVVSSSSSTCFSIQHSSTSEINDFGHIIPPGALWHFRLGHLSHDRLL 432
IG+G+ + + +YHL + +T ++ T++ ALWH RLGH S L
Sbjct: 480 IGVGT-ESNGVYHLQRAEVVATSANVVKWKTNK-----------ALWHMRLGHPSSKVLS 527
Query: 433 A-LHTVQNSISVSKSI--VCDVCHLAKQKRKMFTVSVSKAQKCFDLVHMDIWGPLAQASV 489
+ L ++++ S S + +CDVC AKQ R F+ S +KA++CF +H D+WGP AS
Sbjct: 528 SVLPSLEDFDSCSSDLKTICDVCVRAKQTRASFSESFNKAEECFSFIHYDVWGPYKHASS 587
Query: 490 HNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQIVKAIRSDNGPEFL- 548
YFLT++DD+SR VW+ L+ K EV ++ FI + QF + VK +RS+NG EF+
Sbjct: 588 CGAHYFLTIVDDHSRAVWIHLMLAKSEVASLLQQFIAMASRQFNKQVKTVRSNNGTEFMS 647
Query: 549 LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSKLPKKMWCYSVLHAVF 608
L ++++ +GIVHQ SCV T QQNGRVERKH+HILN+AR+LLFQ++LP W SVL A +
Sbjct: 648 LKSYFAERGIVHQISCVYTHQQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAY 707
Query: 609 LMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNRSKLDPRARKCIFLGY 668
L+NR P+ +L K+PY++LY + ++VFGSLCFA T K R RKCIF+GY
Sbjct: 708 LINRTPTPILDGKTPYKILYSQPPSYASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGY 767
Query: 669 KQGMKGYVLMDLITQEIFISRDVIFHEHVLPY---KGSNSPAWTCLDLQTQAESTADKLN 725
G KG+ + D+ +Q F+SRDV+F E + P+ K ++ + + + D+
Sbjct: 768 PHGQKGWRIYDIESQIFFVSRDVVFQEDIFPFADKKNKDTFSSPAAVIPSPILPYDDEFL 827
Query: 726 VASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEIPNTQTVDEIPQPGSITAEGEV 785
+I GD + P +I D + D P++ + P A
Sbjct: 828 DIYQI----GDVPATNPLPAIID-----------VNDSPPSSPIITATP-----AAASPP 867
Query: 786 EVRRSTRPLKRPVHLANFQFSALPIRSSTA---------HSIVHHYSDERLSTAHRAYAL 836
+RR R + V L ++Q + S+ + + ++ S E S +++ +
Sbjct: 868 PLRRGLRQRQENVRLKDYQTYSAQCESTQTLSDNIGTCIYPMANYVSGEIFSPSNQHFLA 927
Query: 837 NIAQDQEPSTFAEANKDLHWREAMQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVKRN 896
I+ P T+ +A ++ WR A+ E+ ALE GTW + LP+GVK IG+KWV+R+K N
Sbjct: 928 AISMVDPPQTYNQAIREKEWRNAVFFEVDALEDQGTWDITKLPQGVKAIGSKWVFRIKYN 987
Query: 897 VDGTLARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVDNA 956
+GT+ RYKARLVA G +Q EG+D+ TF+PV K+ TVR++L +AA+++W LHQ+DV NA
Sbjct: 988 SNGTVERYKARLVALGNHQKEGIDFTKTFAPVVKMQTVRLLLDVAAAKDWELHQMDVHNA 1047
Query: 957 FLHGNLDEDVYMTIPAGVPSVKPNQVCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQTA 1016
FLHG+L ED+YM P G + P+ VCKL KS+YGLKQA R W+EKLS L GF Q+
Sbjct: 1048 FLHGDLKEDIYMKPPPGFKTTDPSLVCKLKKSIYGLKQAPRCWFEKLSTSLLKFGFTQSK 1107
Query: 1017 SDHSLFVKFQGSSFTGLLVYVDDVILFGNTVTE 1049
D+SLF +GS ++VYVDDV++ G V E
Sbjct: 1108 KDYSLFTSIRGSKVLHVIVYVDDVVICGKAVRE 1140
>At1g47650 hypothetical protein
Length = 1409
Score = 496 bits (1278), Expect = e-140
Identities = 245/467 (52%), Positives = 333/467 (70%), Gaps = 8/467 (1%)
Query: 860 MQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEGL 919
+ +EI A+E TW++ LP G K +G KWV+ +K DG+L RYKARLVAKGY Q EGL
Sbjct: 747 VSSEIGAMETTHTWEITTLPAGKKAVGCKWVFSLKFLADGSLERYKARLVAKGYTQKEGL 806
Query: 920 DYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVPSVK- 978
DY DTFSPVAK+TT++++L ++AS+ W L QLDV NAFL+G L+E++YM +P G + K
Sbjct: 807 DYTDTFSPVAKMTTIKLLLKISASKKWFLKQLDVSNAFLNGELEEEIYMKLPEGYAARKG 866
Query: 979 ----PNQVCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFTGLL 1034
PN VC+L +S+YGLKQASR+W++K SA L LGFK+T DH+LF+K F +L
Sbjct: 867 ITLPPNSVCRLKRSIYGLKQASRQWFKKFSASLLDLGFKKTHGDHTLFIKEYDGEFVIVL 926
Query: 1035 VYVDDVILFGNTV-TEFQLVKDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRKYCL 1093
VYVDD+ + + QL +D L Q F ++DLG LKYFLGLE+A + +GIS+CQRKY L
Sbjct: 927 VYVDDIAIASTSEGAAIQLTQD-LQQRFKLRDLGDLKYFLGLEIARTEAGISICQRKYAL 985
Query: 1094 DLLQETGTLGSKPVATPLDPSIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISHATQ 1153
+LL TG + KPV+ P+ P++++ + G DD YRR+VG+L+YLT TR DI+ A
Sbjct: 986 ELLASTGMVNCKPVSVPMIPNVKMMKTDGDLLDDREQYRRIVGKLMYLTITRLDITFAVN 1045
Query: 1154 QLSQYMSNPMDGHFKAAQRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSI 1213
+L Q+ S P H +AA RVL+Y+K S G GL + ++ + ++G++D+DWA CPD+RRS
Sbjct: 1046 KLCQFSSAPRTSHLQAAYRVLQYIKGSVGQGLFYSASADLTLKGFADSDWASCPDSRRST 1105
Query: 1214 SGYCFYIGRSLVSWKAKKQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPV 1273
+G+ ++G SL+SW++KKQ VSRSS EAEYRALA TCEL WL LL LK + PV
Sbjct: 1106 TGFSMFVGDSLISWRSKKQHVVSRSSAEAEYRALALVTCELVWLHTLLMSLKAS-YLVPV 1164
Query: 1274 LFCDNQSALHIAANPVFHERTKHLDIDCHVVREKLQAGILKLLPIPT 1320
L+ D+ +A++IA NPVFHERTKH+++DCH VREKL G LKLL + T
Sbjct: 1165 LYSDSTTAIYIATNPVFHERTKHIELDCHTVREKLDNGELKLLHVRT 1211
Score = 255 bits (651), Expect = 1e-67
Identities = 135/288 (46%), Positives = 178/288 (60%), Gaps = 22/288 (7%)
Query: 417 ALWHFRLGHLSHDRLLALHTVQNSISVSK-----SIVCDVCHLAKQKRKMFTVSVSKAQK 471
++WH RLGH S RL + +S+ +K S C VCHLAKQ++ F +
Sbjct: 457 SMWHRRLGHASLQRL---DVISDSLGTTKPKNKGSDYCHVCHLAKQRKLPFPSQNKVCNE 513
Query: 472 CFDLVHMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQ 531
FDL+H+DIWGP + +V +KYFLT++DD+SR W+ LL NK EV FI V+ Q
Sbjct: 514 IFDLLHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYLLRNKSEVLTVFPAFIEQVENQ 573
Query: 532 FGQIVKAIRSDNGPEFLLPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQ 591
+ VKA+RSDN PE + Y +GIV SC TP+QN VERKHQHILN++RAL+FQ
Sbjct: 574 YKVRVKAVRSDNAPELKFTSLYQQKGIVSFHSCPETPEQNLVVERKHQHILNVSRALMFQ 633
Query: 592 SKLPKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTN 651
S++P +W VL AVFL+NR PS+LL NK+PYE+L G++ F
Sbjct: 634 SQVPLSLWGDCVLTAVFLINRTPSQLLSNKTPYEIL------------TGTVPF--YFAK 679
Query: 652 NRSKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLP 699
R K PR++ C+FLGY G KGY LMDL + +FISR+V+FHE V P
Sbjct: 680 KRHKFQPRSKACVFLGYPAGYKGYKLMDLESHTVFISRNVVFHEEVFP 727
>At1g37110
Length = 1356
Score = 493 bits (1268), Expect = e-139
Identities = 313/948 (33%), Positives = 500/948 (52%), Gaps = 67/948 (7%)
Query: 417 ALWHFRLGHLSHDRL--LALHTVQNSISVSKSIVCDVCHLAKQKRKMFTVSVSKAQKCFD 474
ALWH RLGH+S + L LA + + +++ C+ C + K K+ F V ++
Sbjct: 438 ALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSEDALS 497
Query: 475 LVHMDIWG-PLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFG 533
VH D+WG P S+ +YFL+++DD +R VW+ L +K E + + +LV+ Q
Sbjct: 498 YVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVN 557
Query: 534 QIVKAIRSDNGPEFLLPAFYS---AQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLF 590
+ VK +R+DNG EF F S GI ++C TPQQNG ER ++ I+ R LL
Sbjct: 558 KKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCLLN 617
Query: 591 QSKLPKKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLT 650
+S + + W + A +L+NR P+ + + P E+ + ++ FGS+ + +
Sbjct: 618 KSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAY---VH 674
Query: 651 NNRSKLDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHV----LPYKGSNSP 706
++ KL PRA K FLGY G KGY + L ++ ISR+V+F E V L K ++
Sbjct: 675 QDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEEKCVISRNVVFQESVVYRDLKVKEDDT- 733
Query: 707 AWTCLDLQTQAESTADKL--NVASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEI 764
D Q E+T+ ++ N +E + G + + I +G Q + E+E+
Sbjct: 734 -----DNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQ-----SSDSEEEV 783
Query: 765 PNTQTVDEIPQPGSITAE--GEVEVRRSTRPLKRPVHLANFQFSALPIRSSTAHSIVHHY 822
++ E P+ +T VRR+ P R ++ F+ + + +
Sbjct: 784 EYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVENCIV------- 836
Query: 823 SDERLSTAHRAYALNIAQDQEPSTFAEANKDLH---WREAMQAEIKALEKNGTWKLVDLP 879
QEP ++ EA + W A E+ +L KNGTW LVD P
Sbjct: 837 -------------------QEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKP 877
Query: 880 EGVKPIGNKWVYRVKRNVDGTL-ARYKARLVAKGYNQVEGLDYFDTFSPVAKLTTVRVIL 938
+ K IG +W++++K + G R+KARLVAKGY Q EG+DY + F+PV K ++R+++
Sbjct: 878 KDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILM 937
Query: 939 ALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAG-VPSVKPNQVCKLLKSLYGLKQASR 997
+L ++ L Q+DV FLHG+L+E++YM P G V N+VC+L KSLYGLKQ+ R
Sbjct: 938 SLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPR 997
Query: 998 KWYEKLSAHLETLGFKQTASDHSLFVKFQGS-SFTGLLVYVDDVILFGNTVTEFQLVKDS 1056
+W ++ + + F ++ D ++VK F LL+YVDD+++ G + E VK+
Sbjct: 998 QWNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQ 1057
Query: 1057 LHQAFGIKDLGVLKYFLGLEVAHSTSG--ISLCQRKYCLDLLQETGTLGSKPVATPLDPS 1114
L F +KD+G LG+++ G + L Q Y +L G+K P+
Sbjct: 1058 LSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAH 1117
Query: 1115 IRLS--QEQGKPYD-DPAAYRRLVGRLLY-LTTTRPDISHATQQLSQYMSNPMDGHFKAA 1170
+L+ +E+ + D D Y VG ++Y + TRPD+++A +S+YMS P H++A
Sbjct: 1118 FKLAAVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAV 1177
Query: 1171 QRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCFYIGRSLVSWKAK 1230
+ V+RYLK + L L+F + + GY D+++A D RRSISGY F IG + VSWKA
Sbjct: 1178 KWVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKAS 1237
Query: 1231 KQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDNQSALHIAANPVF 1290
Q V+ S+ EAEY ALA A E W+ LLQD+ + + +CD+QSA+ ++ N V+
Sbjct: 1238 LQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKI-WCDSQSAICLSKNSVY 1296
Query: 1291 HERTKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTKALQPRVFQ 1338
HERTKH+D+ + +R+ +++G + +L I T+ D TK + F+
Sbjct: 1297 HERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFK 1344
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 492 bits (1267), Expect = e-139
Identities = 279/668 (41%), Positives = 393/668 (58%), Gaps = 50/668 (7%)
Query: 703 SNSPAWTCLDLQTQAESTADKLNVASEIQSAKGDAS-VSTPCASIEDGVQHEMPSGASIE 761
SNS T + ++S ++AS++Q+++ D+S STP ++ G + A I+
Sbjct: 479 SNSALQTDSVFEPDSDSDVAPASIASDLQNSRVDSSDSSTPDKNLASG-----DTLAQID 533
Query: 762 DEIPNTQTVDEIPQPGSITAEGEVEV---RRSTRPLKRPVHLANFQF----------SAL 808
D T + QP + VE R+ R +++ V L ++ AL
Sbjct: 534 DSPDIVSTPNRNNQPLFVVDSPFVEATSPRQRKRQIRQSVRLQDYVLYNATVSPINPHAL 593
Query: 809 PIRSSTAHSIVH----------HYSDERLSTAHRAYALNIAQDQEPSTFAEANKDLHWRE 858
P SS + S+V + SD+ S H+A+ I + EP F EA + W +
Sbjct: 594 PDSSSQSSSMVQGTSSLYPLSDYVSDDCFSAGHKAFLAAITANDEPKHFKEAVRIKVWND 653
Query: 859 AMQAEIKALEKNGTWKLVDLPEGVKPIGNKWVYRVKRNVDGTLARYKARLVAKGYNQVEG 918
AM E+ ALE N TW +VDLP G IG++WVY+ K N DG++ RYKARLV +G QVEG
Sbjct: 654 AMFKEVDALEINKTWDIVDLPPGKVAIGSQWVYKTKYNADGSIERYKARLVVQGNKQVEG 713
Query: 919 LDYFDTFSPVAKLTTVRVILALAASQNWHLHQLDVDNAFLHGNLDEDVYMTIPAGVPSVK 978
DY +TF+PV K+TTVR +L L A+ W ++Q+DV+NAFLHG+LDE+VYM +P G
Sbjct: 714 EDYNETFAPVVKMTTVRTLLRLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSH 773
Query: 979 PNQVCKLLKSLYGLKQASRKWYEKLSAHLETLGFKQTASDHSLFVKFQGSSFTGLLVYVD 1038
P++VC+L KSLYGLKQA R W++KLS L GF Q D+S F + +LVYVD
Sbjct: 774 PDKVCRLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYSFFSYTRNGIELRVLVYVD 833
Query: 1039 DVILFGNTVTEFQLVKDSLHQAFGIKDLGVLKYFLGLEVAHSTSGISLCQRKYCLDLLQE 1098
D+++ GN Q K+ L + F +KDLG LKYFLG+EV+ + GI L QRKY LD++ +
Sbjct: 834 DLLICGNDGYMLQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITD 893
Query: 1099 TGTLGSKPVATPLDPSIRLSQEQGKPYDDPAAYRRLVGRLLYLTTTRPDISHATQQLSQY 1158
+G LG +P TPL+ + L+ + G D YRRLVGRLLYL TRP++S++ LSQ+
Sbjct: 894 SGNLGCRPALTPLEQNHHLATDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQF 953
Query: 1159 MSNPMDGHFKAAQRVLRYLKASPGLGLLFPRNSTINIQGYSDADWAGCPDTRRSISGYCF 1218
M P + H AA R++R+LK SPG G+L ++ + + Y D+D+ CP TRRS+S Y
Sbjct: 954 MQTPREAHLAAAMRIVRFLKGSPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLSAYVV 1013
Query: 1219 YIGRSLVSWKAKKQTTVSRSSNEAEYRALAYATCELQWLLYLLQDLKVTCTATPVLFCDN 1278
+G S +SWK KKQ TVS SS EAEYRA++ A E++WL LL++L
Sbjct: 1014 LLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALREIKWLRKLLKEL-------------- 1059
Query: 1279 QSALHIAANPVFHERTKHLDIDCHVVREKLQAGILKLLPIPTTLQVADVFTKALQPRVFQ 1338
ANPVFHERTKH++ DCH VR+ ++ GI+ + T Q+AD+FTKAL F
Sbjct: 1060 -------ANPVFHERTKHIESDCHSVRDAVRDGIITTHHVRTNEQLADIFTKALGRSQFL 1112
Query: 1339 GFATKLAM 1346
+KL +
Sbjct: 1113 YLMSKLGI 1120
Score = 282 bits (721), Expect = 1e-75
Identities = 151/374 (40%), Positives = 217/374 (57%), Gaps = 13/374 (3%)
Query: 417 ALWHFRLGHLSHDRLLALHTVQNSISVSKSIVCDVCHLAKQKRKMFTVSVSKAQKCFDLV 476
ALWH RLGH S L +L + +S S CDVC AKQ R++F VS +K+ +CF L+
Sbjct: 89 ALWHQRLGHPSFSVLSSLPVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNKSIECFSLI 148
Query: 477 HMDIWGPLAQASVHNHKYFLTVLDDYSRFVWVVLLNNKGEVQQQVKNFITLVKTQFGQIV 536
H D+WGP S YFLT++DD+SR VW LL K EV+ + NF+ + QFG+ V
Sbjct: 149 HCDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYTEKQFGKSV 208
Query: 537 KAIRSDNGPEFL-LPAFYSAQGIVHQKSCVSTPQQNGRVERKHQHILNIARALLFQSKLP 595
K +RSDNG EF+ L +++ GIVHQ SCV TPQQNGRVERKH+HILN+ARA+LFQ+ LP
Sbjct: 209 KVLRSDNGTEFMCLASYFREHGIVHQTSCVGTPQQNGRVERKHRHILNVARAILFQASLP 268
Query: 596 KKMWCYSVLHAVFLMNRIPSKLLKNKSPYELLYREAVDLEMMKVFGSLCFATTLTNNRSK 655
+ W +VL A +L+NR P+ L SPYE+L+ + E ++VFGS C+ + ++ K
Sbjct: 269 IQFWGEAVLTAAYLINRTPTSLHNGLSPYEILHNSKPNYEHLRVFGSACYVHRASRDKDK 328
Query: 656 LDPRARKCIFLGYKQGMKGYVLMDLITQEIFISRDVIFHEHVLPYKGSN------SPAWT 709
R+R C+F+GY KG+ + D+ +E +SRDV+F E V PY +N SPA
Sbjct: 329 FGERSRLCVFIGYPFAQKGWKVFDMEKKEFLVSRDVVFREDVFPYAATNTDHVSASPAPL 388
Query: 710 CLDLQTQAESTADKLNVASEIQSAKGDASVSTPCASIEDGVQHEMPSGASIEDEIPNTQT 769
+D +T ++ + + K +D + P + D+ ++
Sbjct: 389 LVDEDWMVSTTTLDRGSSAVLSANKNTDPKPNSVTKPDDFAE---PESVTKPDDFAEPES 445
Query: 770 V---DEIPQPGSIT 780
V D+ +P S+T
Sbjct: 446 VTKPDDFAEPVSVT 459
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.335 0.144 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,739,884
Number of Sequences: 26719
Number of extensions: 1078854
Number of successful extensions: 4513
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3895
Number of HSP's gapped (non-prelim): 259
length of query: 1346
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1235
effective length of database: 8,352,787
effective search space: 10315691945
effective search space used: 10315691945
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0366.1