BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0360.9
(107 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15790 unknown protein 80 2e-16
At2g48050 hypothetical protein 32 0.052
At5g16730 putative protein 30 0.15
At1g06530 hypothetical protein 29 0.34
At1g69710 putative regulator of chromosome condensation 29 0.44
At4g20260 endomembrane-associated protein 28 0.76
At1g67230 unknown protein 27 1.3
At5g48600 chromosome condensation protein 27 1.7
At5g47820 kinesin-like protein 27 1.7
At1g22060 hypothetical protein 27 1.7
At1g17360 COP1-Interacting Protein 7, putative 27 1.7
At5g54670 heavy chain polypeptide of kinesin-like protein (katC) 27 2.2
At5g40450 unknown protein 27 2.2
At4g17210 putative protein 27 2.2
At1g03180 hypothetical protein 27 2.2
At1g03300 unknown protein 27 2.2
At5g66310 kinesin heavy chain DNA binding protein-like 26 2.9
At3g05270 unknown protein 26 2.9
At1g29270 hypothetical protein 26 2.9
At5g45160 GTP-binding protein-like; root hair defective 3 protei... 26 3.8
>At4g15790 unknown protein
Length = 191
Score = 79.7 bits (195), Expect = 2e-16
Identities = 46/84 (54%), Positives = 61/84 (71%), Gaps = 9/84 (10%)
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EA 60
ELS LKKTLN+EVEQLR EF+DL+TTL+QQQ+DV+ASL++LGLQD S + S+ E
Sbjct: 117 ELSGLKKTLNLEVEQLREEFKDLKTTLNQQQDDVSASLKSLGLQD-SKEQIDKRSEVTEE 175
Query: 61 KIEEID*KEQQVLPEEDNSKDAEN 84
K+E L +DN+K+AE+
Sbjct: 176 KVE--------ALSTDDNAKEAEH 191
>At2g48050 hypothetical protein
Length = 1500
Score = 32.0 bits (71), Expect = 0.052
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDV---TASLRNLGLQDVSADGKKAESQA 57
E E K+ N++VE++++E +LR LH+ D AS R GL+ + +S A
Sbjct: 760 EAEEKKRQRNLQVEKMKSEMLNLRVQLHRMNSDSNFGVASPRTEGLRRRKSPYLIPDSGA 819
Query: 58 *EAKIE-EID*KEQQVLPEE 76
+I+ + KE+Q + E+
Sbjct: 820 ASPEIDGVVHRKEEQPIDED 839
>At5g16730 putative protein
Length = 853
Score = 30.4 bits (67), Expect = 0.15
Identities = 15/68 (22%), Positives = 36/68 (52%)
Query: 12 EVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EAKIEEID*KEQQ 71
E+ L+ L TT+ +Q+ED+ S + LG + + E + ++++E + ++ +
Sbjct: 367 EITDLKERIVTLETTVAKQKEDLEVSEQRLGSVEEEVSKNEKEVEKLKSELETVKEEKNR 426
Query: 72 VLPEEDNS 79
L +E ++
Sbjct: 427 ALKKEQDA 434
>At1g06530 hypothetical protein
Length = 323
Score = 29.3 bits (64), Expect = 0.34
Identities = 21/73 (28%), Positives = 36/73 (48%), Gaps = 1/73 (1%)
Query: 13 VEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSA-DGKKAESQA*EAKIEEID*KEQQ 71
+E+L E LRT + ++ + LG +V D K + +A E E+ID KE++
Sbjct: 146 IEELEKEVAGLRTVKEENEKRMKELESKLGALEVKELDEKNKKFRAEEEMREKIDNKEKE 205
Query: 72 VLPEEDNSKDAEN 84
V ++ K E+
Sbjct: 206 VHDLKEKIKSLES 218
Score = 25.4 bits (54), Expect = 4.9
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 8 TLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNL-GLQDVSADGKKA----ESQA*EAKI 62
T E E+ E + LR+ + Q+ + + + GL+ V + +K ES+ ++
Sbjct: 120 TARTEGEEATAEAEKLRSEISQKGGGIEELEKEVAGLRTVKEENEKRMKELESKLGALEV 179
Query: 63 EEID*KEQQVLPEEDNSKDAEN 84
+E+D K ++ EE+ + +N
Sbjct: 180 KELDEKNKKFRAEEEMREKIDN 201
>At1g69710 putative regulator of chromosome condensation
Length = 1028
Score = 28.9 bits (63), Expect = 0.44
Identities = 17/82 (20%), Positives = 42/82 (50%), Gaps = 1/82 (1%)
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EA 60
E +LK + N ++ L+ + + L + HQ +E++ + R L + A + E+++ +
Sbjct: 834 ESKQLKDSFNQDMAGLKEQVEQLASKAHQLEEELEKTKRQLKVVTAMAADEAEENRSAKE 893
Query: 61 KIEEID*KEQQVLPEEDNSKDA 82
I + + + + E+ + KD+
Sbjct: 894 VIRSLT-TQLKEMAEKQSQKDS 914
>At4g20260 endomembrane-associated protein
Length = 225
Score = 28.1 bits (61), Expect = 0.76
Identities = 19/62 (30%), Positives = 35/62 (55%), Gaps = 4/62 (6%)
Query: 4 ELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EAKIE 63
E K+T+N E+E+ +TE L+ + + E +A ++ L ++D G K S A + +E
Sbjct: 35 ESKETINKEIEEKKTE---LQPKVVETYEATSAEVKAL-VRDPKVAGLKKNSAAVQKYLE 90
Query: 64 EI 65
E+
Sbjct: 91 EL 92
>At1g67230 unknown protein
Length = 1132
Score = 27.3 bits (59), Expect = 1.3
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSAD-------GKKA 53
E ++ K E+E+ + + + + ++DV++ +++L L++ D K
Sbjct: 262 ESDKIIKQKGKELEEAQKKIDAANLAVKKLEDDVSSRIKDLALREQETDVLKKSIETKAR 321
Query: 54 ESQA*EAKIEEID*KEQQVLPEEDNSKDAEN*TGFSLE 91
E QA + K+E + Q L +E +K F LE
Sbjct: 322 ELQALQEKLEAREKMAVQQLVDEHQAKLDSTQREFELE 359
>At5g48600 chromosome condensation protein
Length = 1241
Score = 26.9 bits (58), Expect = 1.7
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 42/123 (34%)
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTL---------HQQQEDVTASLRNL---------- 41
+L E+K VE E R+E +R L H+ + DV +S L
Sbjct: 401 KLEEIKAIAKVETEGYRSELTKIRAELEPWEKDLIVHRGKLDVASSESELLSKKHEAALK 460
Query: 42 -------GLQDVS--------------ADGKKAESQA*EA-KIEEID*KEQQVL-PEEDN 78
L D+S AD KK + +A EA K+EE KEQ+ L P+E
Sbjct: 461 AFTDAQKQLSDISTRKKEKAAATTSWKADIKKKKQEAIEARKVEEESLKEQETLVPQEQA 520
Query: 79 SKD 81
+++
Sbjct: 521 ARE 523
>At5g47820 kinesin-like protein
Length = 1035
Score = 26.9 bits (58), Expect = 1.7
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 12 EVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EAKIEEID*KEQ- 70
EVE + Q+ R L + E++ + + LQDV A KA EA+I ++ K++
Sbjct: 546 EVEDEKRSVQEERNRLLAEIENLASDGQAQKLQDVHAQNLKAL----EAQILDLKKKQES 601
Query: 71 --QVLPEEDNSKDA 82
Q+L ++ S DA
Sbjct: 602 QVQLLKQKQKSDDA 615
>At1g22060 hypothetical protein
Length = 1999
Score = 26.9 bits (58), Expect = 1.7
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASL---RNLGLQDVSADGK---KAE 54
E+ E+ ++++ RTE++ LH+ +V + RN+G Q ++A+ K +
Sbjct: 1211 EMMEISVAADIQIVFTRTEWETYADKLHKDHFEVLTAFNDSRNVGAQHMNANIKLLADLD 1270
Query: 55 SQA*EAKIE 63
S E KIE
Sbjct: 1271 SLKSELKIE 1279
>At1g17360 COP1-Interacting Protein 7, putative
Length = 1061
Score = 26.9 bits (58), Expect = 1.7
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 10 NVEVEQLRTEFQD--LRTTLHQQQ----EDVTASLRNLGLQDVSADGKKAESQA*EAKIE 63
N+E +L T + D + +Q+Q +DV+ +L+N D ++ ++ E + E ++
Sbjct: 767 NIEFTELTTLYSDDMMNKERNQKQNTDIDDVSENLKNEAFDDTESEAEEEEKEVLENPVK 826
Query: 64 -EID*KEQQVLPEEDNSKD 81
E + +E + L E++ D
Sbjct: 827 GEEEAREMETLVVEEDIGD 845
>At5g54670 heavy chain polypeptide of kinesin-like protein (katC)
Length = 754
Score = 26.6 bits (57), Expect = 2.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 2 LSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLG 42
L ++ LN+ +E+LR F+ ++ L ++Q + A+ +LG
Sbjct: 117 LKNKEEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLG 157
>At5g40450 unknown protein
Length = 2910
Score = 26.6 bits (57), Expect = 2.2
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 18 TEFQDLRTTLHQQQEDVTASLRNLGLQDVSA--DGKKAESQA*EAKIEEID*KEQQVLPE 75
+E D T + EDV G +V + K+ +SQ IEEI+ Q LP
Sbjct: 1773 SEKNDNETQTSKTSEDVCMQQEESGTLEVPKPEESKEDKSQEISETIEEIEATSDQTLPI 1832
Query: 76 EDNSKD 81
E + D
Sbjct: 1833 ETSHTD 1838
>At4g17210 putative protein
Length = 527
Score = 26.6 bits (57), Expect = 2.2
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSAD-------GKKA 53
EL+ELK+ N+ VE+ E Q ++ + + + + ++D+S D ++
Sbjct: 169 ELAELKQQFNLSVEERLAELQ------RAEEAECASMVNSNKIKDMSHDIAEMRDAAERL 222
Query: 54 ESQA*EAKIEEID*KEQQVLPEE 76
S A K EE KE+ + E
Sbjct: 223 NSDAARKKEEEEQIKEESIALRE 245
>At1g03180 hypothetical protein
Length = 275
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQ 31
++ + + +++E E L+TEF DL T L + Q
Sbjct: 45 QIPSVLQDMSLEFEGLQTEFMDLETNLAEPQ 75
>At1g03300 unknown protein
Length = 670
Score = 26.6 bits (57), Expect = 2.2
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 11/58 (18%)
Query: 35 TASLRNLGLQDVSADG----KKAESQA*EAKIEEI-------D*KEQQVLPEEDNSKD 81
T L +G+ + S K+ E+ A K+E + + QQ+LPEE+NSKD
Sbjct: 344 TGKLEKMGIAEESVSCVTPLKQTEANAEGNKLEPMRNQNCLRNDSTQQMLPEEENSKD 401
>At5g66310 kinesin heavy chain DNA binding protein-like
Length = 1037
Score = 26.2 bits (56), Expect = 2.9
Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 5/48 (10%)
Query: 1 ELSELKKT---LNVEVEQLRTEFQDLRTTLHQQ--QEDVTASLRNLGL 43
E+ +LKK L ++EQ R+E +DLR + ++ QE T S GL
Sbjct: 394 EVEKLKKEVFQLAQQLEQARSEIKDLRRMVEEEKNQEKETLSTETEGL 441
>At3g05270 unknown protein
Length = 603
Score = 26.2 bits (56), Expect = 2.9
Identities = 20/81 (24%), Positives = 45/81 (54%), Gaps = 3/81 (3%)
Query: 4 ELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVT-ASLRNLGLQDVSADGKKAESQA*EAKI 62
EL+K+ N V QL+ E + + + +E V + L L+ ++ +G K + +A ++++
Sbjct: 321 ELEKS-NAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLE-MALNGSKEQIEALQSRL 378
Query: 63 EEID*KEQQVLPEEDNSKDAE 83
+EI+ K ++ E +++ E
Sbjct: 379 KEIEGKLSEMKKLEAENQELE 399
>At1g29270 hypothetical protein
Length = 123
Score = 26.2 bits (56), Expect = 2.9
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 9 LNVEVEQLRTEFQDLRTT----LHQQQE 32
L +E+E L+ E++DL+ T LHQ QE
Sbjct: 13 LKLEIEALQREYEDLKITKKESLHQFQE 40
>At5g45160 GTP-binding protein-like; root hair defective 3
protein-like
Length = 834
Score = 25.8 bits (55), Expect = 3.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 5 LKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA 57
++K L E E T+F D+ T + A ++NL S KKA +A
Sbjct: 487 IRKLLKRETETAVTDFLDVVTGFELDHAKIDAMVQNLKNYSQSLVEKKAREEA 539
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.331 0.144 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,828,972
Number of Sequences: 26719
Number of extensions: 57787
Number of successful extensions: 344
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 45
length of query: 107
length of database: 11,318,596
effective HSP length: 83
effective length of query: 24
effective length of database: 9,100,919
effective search space: 218422056
effective search space used: 218422056
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0360.9