BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0359.2
(453 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60170 putative protein 429 e-120
At1g58140 hypothetical protein 416 e-116
At1g48710 hypothetical protein 414 e-116
At3g61330 copia-type polyprotein 413 e-116
At2g15650 putative retroelement pol polyprotein 390 e-108
At2g20460 putative retroelement pol polyprotein 349 2e-96
At1g70010 hypothetical protein 349 2e-96
At2g16000 putative retroelement pol polyprotein 345 2e-95
At1g59265 polyprotein, putative 345 3e-95
At1g58889 polyprotein, putative 343 9e-95
At1g31210 putative reverse transcriptase 343 1e-94
At4g27210 putative protein 339 2e-93
At4g02960 putative polyprotein of LTR transposon 339 2e-93
At3g25450 hypothetical protein 338 3e-93
At1g53810 338 4e-93
At4g10990 putative retrotransposon polyprotein 335 2e-92
At4g10690 retrotransposon like protein 333 1e-91
At4g23160 putative protein 332 3e-91
At1g47650 hypothetical protein 330 7e-91
At4g17450 retrotransposon like protein 327 1e-89
>At3g60170 putative protein
Length = 1339
Score = 429 bits (1104), Expect = e-120
Identities = 213/438 (48%), Positives = 303/438 (68%), Gaps = 3/438 (0%)
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
+LT P+ IG KWV++ KLNE G+V + K RLVA+GY+Q GIDYTE FAPVARL+
Sbjct: 857 ELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAPVARLDT 916
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGL 136
+ +++ S N + Q+DVKSAFL+G + +EVYV QP GF E + + V+KL+K+LYGL
Sbjct: 917 VRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKLRKALYGL 976
Query: 137 KQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKE 196
KQAPRAWY R+ ++ L+ EF R + TLF KT +ILIV +YVDD+IF +++++C E
Sbjct: 977 KQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGNILIVSLYVDDLIFTGSDKAMCDE 1036
Query: 197 FSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMH 256
F K M EFEMS +G++K+FLGI+V Q+ G +I Q +Y +E+L +F M ES K P+
Sbjct: 1037 FKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESNAVKNPIV 1096
Query: 257 PTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKR 316
P L K++ KV + +++ ++GSL+YLT +RPD+++ V L +RF S+PR +H A KR
Sbjct: 1097 PGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMSHWLAAKR 1156
Query: 317 ILRYLKGTINLGLMY--KKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASK 374
ILRYLKGT+ LG+ Y +K KL + D+DYAGD +R+ST G + S + WASK
Sbjct: 1157 ILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMASGAICWASK 1216
Query: 375 RQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPIL 433
+Q +ALST EAEYI+AA C+ Q +W++ LE E S I CDN++ I LSK+P+L
Sbjct: 1217 KQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTIQLSKHPVL 1276
Query: 434 HSRAKHIEVKYHFIRGYV 451
H ++KHIEV++H++R V
Sbjct: 1277 HGKSKHIEVRFHYLRDLV 1294
>At1g58140 hypothetical protein
Length = 1320
Score = 416 bits (1070), Expect = e-116
Identities = 207/438 (47%), Positives = 287/438 (65%), Gaps = 1/438 (0%)
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
+LT P IG KWV++ K N KG+V R K RLVA+GYSQ+ GIDY E FAPVARLE
Sbjct: 836 ELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLET 895
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGL 136
+ L+IS + + +HQMDVKSAFLNG + +EVY+ QP G+ + + D V +LKK+LYGL
Sbjct: 896 VRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGL 955
Query: 137 KQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKE 196
KQAPRAW R+ + E +F++ + L+ K K+DILI +YVDD+IF N S+ +E
Sbjct: 956 KQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEE 1015
Query: 197 FSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMH 256
F K M EFEM+ +G + Y+LGI+V Q G +I Q Y KE+LKKF M +S TPM
Sbjct: 1016 FKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPME 1075
Query: 257 PTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKR 316
L K++ V ++ ++GSL YLT +RPDIL++V + +R+ P TH A KR
Sbjct: 1076 CGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKR 1135
Query: 317 ILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQ 376
ILRY+KGT+N GL Y TS+YKL GY D+D+ GD +RKST G ++G +W SK+Q
Sbjct: 1136 ILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQ 1195
Query: 377 STIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHS 435
+ LST EAEY++A C +W+++ L++ + E I+ DN +AI+L+KNP+ H
Sbjct: 1196 PIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHD 1255
Query: 436 RAKHIEVKYHFIRGYVQK 453
R+KHI+ +YH+IR V K
Sbjct: 1256 RSKHIDTRYHYIRECVSK 1273
>At1g48710 hypothetical protein
Length = 1352
Score = 414 bits (1064), Expect = e-116
Identities = 206/438 (47%), Positives = 286/438 (65%), Gaps = 1/438 (0%)
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
+LT P IG KWV++ K N KG+V R K RLVA+GY Q+ GIDY E FAPVARLE
Sbjct: 868 ELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLET 927
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGL 136
+ L+IS + + +HQMDVKSAFLNG + +EVY+ QP G+ + + D V +LKK+LYGL
Sbjct: 928 VRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGL 987
Query: 137 KQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKE 196
KQAPRAW R+ + E +F++ + L+ K K+DILI +YVDD+IF N S+ +E
Sbjct: 988 KQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEE 1047
Query: 197 FSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMH 256
F K M EFEM+ +G + Y+LGI+V Q G +I Q Y KE+LKKF M +S TPM
Sbjct: 1048 FKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPME 1107
Query: 257 PTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKR 316
L K++ V ++ ++GSL YLT +RPDIL++V + +R+ P TH A KR
Sbjct: 1108 CGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKR 1167
Query: 317 ILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQ 376
ILRY+KGT+N GL Y TS+YKL GY D+D+ GD +RKST G ++G +W SK+Q
Sbjct: 1168 ILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQ 1227
Query: 377 STIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHS 435
+ LST EAEY++A C +W+++ L++ + E I+ DN +AI+L+KNP+ H
Sbjct: 1228 PIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHD 1287
Query: 436 RAKHIEVKYHFIRGYVQK 453
R+KHI+ +YH+IR V K
Sbjct: 1288 RSKHIDTRYHYIRECVSK 1305
>At3g61330 copia-type polyprotein
Length = 1352
Score = 413 bits (1062), Expect = e-116
Identities = 206/438 (47%), Positives = 286/438 (65%), Gaps = 1/438 (0%)
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
+LT P IG KWV++ K N KG+V R K RLVA+GYSQ+ GIDY E FAPVARLE
Sbjct: 868 ELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLET 927
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGL 136
+ L+IS + + +HQMDVKSAFLNG + +EVY+ QP G+ + + D V +LKK LYGL
Sbjct: 928 VRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGL 987
Query: 137 KQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKE 196
KQAPRAW R+ + E +F++ + L+ K K+DILI +YVDD+IF N S+ +E
Sbjct: 988 KQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEE 1047
Query: 197 FSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMH 256
F K M EFEM+ +G + Y+LGI+V Q G +I Q Y KE+LKKF + +S TPM
Sbjct: 1048 FKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPME 1107
Query: 257 PTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKR 316
L K++ V ++ ++GSL YLT +RPDIL++V + +R+ P TH A KR
Sbjct: 1108 CGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKR 1167
Query: 317 ILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQ 376
ILRY+KGT+N GL Y TS+YKL GY D+D+ GD +RKST G ++G +W SK+Q
Sbjct: 1168 ILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQ 1227
Query: 377 STIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHS 435
+ LST EAEY++A C +W+++ L++ + E I+ DN +AI+L+KNP+ H
Sbjct: 1228 PIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHD 1287
Query: 436 RAKHIEVKYHFIRGYVQK 453
R+KHI+ +YH+IR V K
Sbjct: 1288 RSKHIDTRYHYIRECVSK 1305
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 390 bits (1001), Expect = e-108
Identities = 195/434 (44%), Positives = 276/434 (62%), Gaps = 3/434 (0%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L KPE +VI KW+++ K + G+ V++K RLVA+G+SQ+ GIDY ETFAPV+R + I
Sbjct: 868 LVDKPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTI 927
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
L++++ L+QMDVKSAFLNG + +EVYV QPPGF E K + V +L K+LYGLK
Sbjct: 928 RALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLK 987
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAWYER+ S+ ++N F R D L+ K +D+LIV +YVDD+I N L F
Sbjct: 988 QAPRAWYERIDSYFIQNGFARSMNDAALYSKKKGEDVLIVSLYVDDLIITGNNTHLINTF 1047
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
K M+ EFEM+ +G L YFLG++V+Q G ++ Q KY +L+ KF M ES TP+ P
Sbjct: 1048 KKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLTP 1107
Query: 258 TCILEKEDTSGK--VCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVK 315
+ + K YR ++G LLYL ASRPD++++ +R+ S P H K
Sbjct: 1108 QGKRKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQEAK 1167
Query: 316 RILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKR 375
R+LRY+KGT N G+++ +L GY D+D+ G ++KST G LG + W S +
Sbjct: 1168 RVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLEDKKSTTGYVFTLGLAMFCWQSCK 1227
Query: 376 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILH 434
Q T+A STAEAEYI+ + Q +W++ ED+ + + IPI CDN +AI++ +NP+ H
Sbjct: 1228 QQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNPVQH 1287
Query: 435 SRAKHIEVKYHFIR 448
R KHIE+KYHF+R
Sbjct: 1288 RRTKHIEIKYHFVR 1301
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 349 bits (896), Expect = 2e-96
Identities = 177/437 (40%), Positives = 271/437 (61%), Gaps = 6/437 (1%)
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
++T P +G KWVF K + G + R K R+VA+GY+Q+EG+DYTETF+PVA++
Sbjct: 977 EITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMAT 1036
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEK----KPDHVFKLKKS 132
+ LL+ S + L+Q+D+ +AFLNG + + +Y+ P G+ D K P+ V +LKKS
Sbjct: 1037 VKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKS 1096
Query: 133 LYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQS 192
+YGLKQA R W+ + S+ LL F + D TLF + + +++ +YVDDI+ S +
Sbjct: 1097 IYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQ 1156
Query: 193 LCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAK 252
+ ++ ++A F++ +G LKYFLG++V +T EG + Q KY ELL +ML+ +
Sbjct: 1157 AAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSS 1216
Query: 253 TPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLT 312
PM P L K D +++YR ++G L+YLT +RPDI F+V+ +F S PR HL
Sbjct: 1217 IPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLA 1276
Query: 313 AVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWA 372
AV ++L+Y+KGT+ GL Y + L GY DAD+ R+ST G F+GS+L+SW
Sbjct: 1277 AVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWR 1336
Query: 373 SKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPI-YCDNTAAISLSKNP 431
SK+Q T++ S+AEAEY + A+ S +M W+ L ++ S +PI Y D+TAA+ ++ NP
Sbjct: 1337 SKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRV-HSGVPILYSDSTAAVYIATNP 1395
Query: 432 ILHSRAKHIEVKYHFIR 448
+ H R KHIE+ H +R
Sbjct: 1396 VFHERTKHIEIDCHTVR 1412
>At1g70010 hypothetical protein
Length = 1315
Score = 349 bits (895), Expect = 2e-96
Identities = 180/432 (41%), Positives = 264/432 (60%), Gaps = 5/432 (1%)
Query: 22 PENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLI 81
P + IG +W+F+ K N G V R K RLVAQGY+Q+EGIDY ETF+PVA+L ++ LL+
Sbjct: 836 PADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLL 895
Query: 82 SFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFE----DEKKPDHVFKLKKSLYGLK 137
+ + L Q+D+ +AFLNG + +E+Y+ P G+ D P+ V +LKKSLYGLK
Sbjct: 896 GVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLK 955
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QA R WY + SS LL F++ D T F K L V +Y+DDII S N +
Sbjct: 956 QASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDIL 1015
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
M++ F++ +GELKYFLG+++ ++ +G +I Q KY +LL + L + PM P
Sbjct: 1016 KSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDP 1075
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+ + + V YR +IG L+YL +RPDI F+V+ A+F PR+ HL AV +I
Sbjct: 1076 SMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKI 1135
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
L+Y+KGTI GL Y TSE +L Y +ADY R R+ST G C FLG +L+ W S++Q
Sbjct: 1136 LQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQD 1195
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSR 436
++ S+AEAEY S ++ + +++W+ + L++ Q+ L ++CDN AAI ++ N + H R
Sbjct: 1196 VVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHER 1255
Query: 437 AKHIEVKYHFIR 448
KHIE H +R
Sbjct: 1256 TKHIESDCHSVR 1267
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 345 bits (886), Expect = 2e-95
Identities = 176/436 (40%), Positives = 270/436 (61%), Gaps = 4/436 (0%)
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
++T P+ +G KWVF K G++ R K RLVA+GY+Q+EG+DYT+TF+PVA++
Sbjct: 970 EITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTT 1029
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEK----KPDHVFKLKKS 132
I LL+ S + L Q+DV +AFLNG + +E+++ P G+ + K + V +LK+S
Sbjct: 1030 IKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRS 1089
Query: 133 LYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQS 192
+YGLKQA R W+++ SS LL F + D TLF K Y + +IV +YVDDI+ S +++
Sbjct: 1090 IYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEA 1149
Query: 193 LCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAK 252
+ ++ + F++ +G+LKYFLG++V +T G I Q KY ELL+ ML
Sbjct: 1150 AAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVS 1209
Query: 253 TPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLT 312
PM P + K+D + YR ++G L+YLT +RPDI F+V+ +F S PR THLT
Sbjct: 1210 VPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLT 1269
Query: 313 AVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWA 372
A R+L+Y+KGT+ GL Y +S+ L G+ D+D+A + R+ST F+G +L+SW
Sbjct: 1270 AAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWR 1329
Query: 373 SKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPI 432
SK+Q T++ S+AEAEY + A+ + +M+W+ L Q +Y D+TAAI ++ NP+
Sbjct: 1330 SKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVPILYSDSTAAIYIATNPV 1389
Query: 433 LHSRAKHIEVKYHFIR 448
H R KHI++ H +R
Sbjct: 1390 FHERTKHIKLDCHTVR 1405
>At1g59265 polyprotein, putative
Length = 1466
Score = 345 bits (885), Expect = 3e-95
Identities = 180/432 (41%), Positives = 263/432 (60%), Gaps = 1/432 (0%)
Query: 22 PENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLI 81
P +V ++G +W+F K N G + R K RLVA+GY+Q+ G+DY ETF+PV + +I +++
Sbjct: 992 PSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVL 1051
Query: 82 SFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPR 141
+++ + + Q+DV +AFL G ++ +VY+ QPPGF D+ +P++V KL+K+LYGLKQAPR
Sbjct: 1052 GVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPR 1111
Query: 142 AWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEFSKMM 201
AWY L ++LL FV DT+LF I+ + +YVDDI+ + +L +
Sbjct: 1112 AWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNL 1171
Query: 202 QAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCIL 261
F + EL YFLGI+ + P G ++ Q +Y +LL + NM+ + TPM P+ L
Sbjct: 1172 SQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKL 1231
Query: 262 EKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYL 321
+ YRG++GSL YL +RPDI ++V+ ++F P E HL A+KRILRYL
Sbjct: 1232 SLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYL 1291
Query: 322 KGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIAL 381
GT N G+ KK + L Y DAD+AGD+ + ST G +LG + +SW+SK+Q +
Sbjct: 1292 AGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVR 1351
Query: 382 STAEAEYISAAICSTQMLWMKHQLEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKHI 440
S+ EAEY S A S++M W+ L + I + P IYCDN A L NP+ HSR KHI
Sbjct: 1352 SSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHI 1411
Query: 441 EVKYHFIRGYVQ 452
+ YHFIR VQ
Sbjct: 1412 AIDYHFIRNQVQ 1423
>At1g58889 polyprotein, putative
Length = 1466
Score = 343 bits (881), Expect = 9e-95
Identities = 179/432 (41%), Positives = 262/432 (60%), Gaps = 1/432 (0%)
Query: 22 PENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLI 81
P +V ++G +W+F K N G + R K R VA+GY+Q+ G+DY ETF+PV + +I +++
Sbjct: 992 PSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIRIVL 1051
Query: 82 SFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPR 141
+++ + + Q+DV +AFL G ++ +VY+ QPPGF D+ +P++V KL+K+LYGLKQAPR
Sbjct: 1052 GVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPR 1111
Query: 142 AWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEFSKMM 201
AWY L ++LL FV DT+LF I+ + +YVDDI+ + +L +
Sbjct: 1112 AWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNL 1171
Query: 202 QAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCIL 261
F + EL YFLGI+ + P G ++ Q +Y +LL + NM+ + TPM P+ L
Sbjct: 1172 SQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKL 1231
Query: 262 EKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYL 321
+ YRG++GSL YL +RPDI ++V+ ++F P E HL A+KRILRYL
Sbjct: 1232 SLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYL 1291
Query: 322 KGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIAL 381
GT N G+ KK + L Y DAD+AGD+ + ST G +LG + +SW+SK+Q +
Sbjct: 1292 AGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVR 1351
Query: 382 STAEAEYISAAICSTQMLWMKHQLEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKHI 440
S+ EAEY S A S++M W+ L + I + P IYCDN A L NP+ HSR KHI
Sbjct: 1352 SSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHI 1411
Query: 441 EVKYHFIRGYVQ 452
+ YHFIR VQ
Sbjct: 1412 AIDYHFIRNQVQ 1423
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 343 bits (879), Expect = 1e-94
Identities = 173/435 (39%), Positives = 270/435 (61%), Gaps = 3/435 (0%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L ++++++ +KWVF+ KL+ G + + K RLVA+G+ Q+EG+DY ETF+PV R I
Sbjct: 891 LVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATI 950
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
L++ S + + Q+DV +AFL+G + + V+++QP GF D +KP HV +L K++YGLK
Sbjct: 951 RLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLK 1010
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAW++ S+FLL+ FV K D +LF IL + +YVDDI+ ++QSL ++
Sbjct: 1011 QAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDL 1070
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
+ ++ F M +G +YFLGIQ++ G ++HQ+ Y ++L++ M + TP+
Sbjct: 1071 LQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQ 1130
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
L+ ++ +R + G L YLT +RPDI F+V+ + P + +KRI
Sbjct: 1131 Q--LDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRI 1188
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRY+KGTI +GL K+ S LS Y D+D+AG + R+ST G C LGSNL+SW++KRQ
Sbjct: 1189 LRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQP 1248
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSR 436
T++ S+ EAEY + + ++ W+ L D I + +YCDN +A+ LS NP LH+R
Sbjct: 1249 TVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNR 1308
Query: 437 AKHIEVKYHFIRGYV 451
+KH + YH+IR V
Sbjct: 1309 SKHFDTDYHYIREQV 1323
>At4g27210 putative protein
Length = 1318
Score = 339 bits (870), Expect = 2e-93
Identities = 174/442 (39%), Positives = 272/442 (61%), Gaps = 3/442 (0%)
Query: 9 SCTTRSKLDLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETF 68
+C+ L ++HV+G+KWVFR KL+ G + + K R+VA+G+ Q+EGIDY ET+
Sbjct: 736 NCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLETY 795
Query: 69 APVARLEAIILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFK 128
+PV R + L++ + N + QMDVK+AFL+G + + VY+ QP GF D KPDHV
Sbjct: 796 SPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAGFVDPSKPDHVCL 855
Query: 129 LKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDD-IIFG 187
L KS+YGLKQ+PRAW+++ S+FLLE F K D +LF + ++++++ +YVDD +I G
Sbjct: 856 LHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITG 915
Query: 188 SANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLE 247
+++Q+L + + EF M+ MG+L YFLGIQV + G ++ Q KY ++LL +M
Sbjct: 916 NSSQTLTSLLA-ALNKEFRMTDMGQLHYFLGIQVQRQQNGLFMSQQKYAEDLLIAASMEH 974
Query: 248 STVAKTPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPR 307
T TP+ +R + G L YLT +RPDI F+V+ + P
Sbjct: 975 CTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQKMHQPT 1034
Query: 308 ETHLTAVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSN 367
+ +KRILRY+KGTI +G+ Y + S L Y D+D+ + R+S G C F+G+N
Sbjct: 1035 ISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNCKQTRRSVGGLCTFMGTN 1094
Query: 368 LVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIP-IYCDNTAAIS 426
LVSW+SK+ T++ S+ EAEY S + ++++LW+ L + +I + P ++CDN +A+
Sbjct: 1095 LVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSAVY 1154
Query: 427 LSKNPILHSRAKHIEVKYHFIR 448
L+ NP H+R KH ++ +HF+R
Sbjct: 1155 LTANPAFHARTKHFDIDFHFVR 1176
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 339 bits (869), Expect = 2e-93
Identities = 175/432 (40%), Positives = 263/432 (60%), Gaps = 1/432 (0%)
Query: 22 PENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLI 81
P +V ++G +W+F K N G + R K RLVA+GY+Q+ G+DY ETF+PV + +I +++
Sbjct: 975 PPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVL 1034
Query: 82 SFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPR 141
+++ + + Q+DV +AFL G ++ EVY+ QPPGF D+ +PD+V +L+K++YGLKQAPR
Sbjct: 1035 GVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPR 1094
Query: 142 AWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEFSKMM 201
AWY L ++LL FV DT+LF I+ + +YVDDI+ + L K +
Sbjct: 1095 AWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDAL 1154
Query: 202 QAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCIL 261
F + +L YFLGI+ + P+G ++ Q +YT +LL + NML + TPM + L
Sbjct: 1155 SQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKL 1214
Query: 262 EKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYL 321
+ YRG++GSL YL +RPD+ ++V+ +++ P + H A+KR+LRYL
Sbjct: 1215 TLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYL 1274
Query: 322 KGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIAL 381
GT + G+ KK + L Y DAD+AGD + ST G +LG + +SW+SK+Q +
Sbjct: 1275 AGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVR 1334
Query: 382 STAEAEYISAAICSTQMLWMKHQLEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKHI 440
S+ EAEY S A S+++ W+ L + I S+ P IYCDN A L NP+ HSR KHI
Sbjct: 1335 SSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHI 1394
Query: 441 EVKYHFIRGYVQ 452
+ YHFIR VQ
Sbjct: 1395 ALDYHFIRNQVQ 1406
>At3g25450 hypothetical protein
Length = 1343
Score = 338 bits (868), Expect = 3e-93
Identities = 172/436 (39%), Positives = 274/436 (62%), Gaps = 1/436 (0%)
Query: 18 LTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAI 77
L P IG KWVF+ K N G + + K RLVA+GY Q+ G+D+ E FAPVAR+E +
Sbjct: 851 LVDLPVGSKAIGVKWVFKLKHNSDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIETV 910
Query: 78 ILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLK 137
L+I+ + ++ +H +DVK+AFL+G + ++VYV QP GF +++ + V+KL K+LYGL+
Sbjct: 911 RLIIALAASNGWEIHHLDVKTAFLHGELREDVYVSQPEGFTNKESKEKVYKLHKALYGLR 970
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QAPRAW +L+ L E +F + + +L+ K ++IL+V +YVDD++ +N + F
Sbjct: 971 QAPRAWNTKLNEILKELKFEKCHKEPSLYRKQEGENILVVAVYVDDLLVTGSNLDIILNF 1030
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
K M +FEMS +G+L Y+LGI+V Q+ +G + Q +Y K++L++ M + TPM
Sbjct: 1031 KKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIA 1090
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+ L K ++ + YR IG L YL +RPD+ ++V + +R+ +PRE+H A+K+I
Sbjct: 1091 SLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQI 1150
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYL+GT + GL +KK L GY D+ + D + KST G+ +L ++W S++Q
Sbjct: 1151 LRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQ 1210
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSR 436
+ LS+ EAE+++A + Q +W++ L + E + I DN +AI+L+KNP+ H R
Sbjct: 1211 VVTLSSCEAEFMAATEAAKQAIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGR 1270
Query: 437 AKHIEVKYHFIRGYVQ 452
+KHI +YHFIR V+
Sbjct: 1271 SKHIHRRYHFIRECVE 1286
>At1g53810
Length = 1522
Score = 338 bits (867), Expect = 4e-93
Identities = 174/452 (38%), Positives = 269/452 (59%), Gaps = 14/452 (3%)
Query: 9 SCTTRSKLDLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETF 68
+C L N++V+G+ WVFR KL+ G + + K RLVA+G+ Q+EGIDY ET+
Sbjct: 938 NCKETETWTLVPYSPNMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETY 997
Query: 69 APVARLEAIILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFK 128
+PV R + L++ + L QMDVK+AFL+G +++ VY+ QP GF D+ KPDHV
Sbjct: 998 SPVVRTPTVRLILHVATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCL 1057
Query: 129 LKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGS 188
L KSLYGLKQ+PRAW++R S+FLLE F+ D +LF + +D++++ +YVDD++
Sbjct: 1058 LHKSLYGLKQSPRAWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITG 1117
Query: 189 ANQSLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLES 248
N + EF M MG++ YFLGIQ+ G ++ Q KY ++LL +M
Sbjct: 1118 NNSQSLTHLLAALNKEFRMKDMGQVHYFLGIQIQTYDGGLFMSQQKYAEDLLITASMANC 1177
Query: 249 TVAKTPMHPTCILEKEDTSGKVCQ--KLYRGMIGSLLYLTASRPDILFSVHLCARFQSDP 306
+ TP+ L++ +V +R + G L YLT +RPDI F+V+ + P
Sbjct: 1178 SPMPTPL--PLQLDRVSNQDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHQP 1235
Query: 307 RETHLTAVKRILRYLKGTINLGLMYKKT---------SEYKLSGYCDADYAGDRTERKST 357
+ +KRILRY+KGT+++G+ Y S+Y LS Y D+DYA + R+S
Sbjct: 1236 SVSDFNLLKRILRYIKGTVSMGIQYNSNSSSVVSAYESDYDLSAYSDSDYANCKETRRSV 1295
Query: 358 FGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIP- 416
G C F+G N++SW+SK+Q T++ S+ EAEY S + ++++ WM L + + + P
Sbjct: 1296 GGYCTFMGQNIISWSSKKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIGVSLPDTPE 1355
Query: 417 IYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 448
++CDN +A+ L+ NP H+R KH +V +H+IR
Sbjct: 1356 LFCDNLSAVYLTANPAFHARTKHFDVDHHYIR 1387
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 335 bits (860), Expect = 2e-92
Identities = 171/437 (39%), Positives = 267/437 (60%), Gaps = 9/437 (2%)
Query: 23 ENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLIS 82
E +V+G KWVF K N G + R K RLVAQG++QQEGIDY ETF+PVA+ ++ LL+
Sbjct: 561 EGKNVVGCKWVFTIKYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLG 620
Query: 83 FSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDE------KKPDHVFKLKKSLYGL 136
+ L QMDV +AFL+G + +E+Y+ P G+ KP V +L KSLYGL
Sbjct: 621 LAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKP--VCRLLKSLYGL 678
Query: 137 KQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKE 196
KQA R WY+RLSS L F++ D T+F K I++V +YVDD++ S + S +
Sbjct: 679 KQASRQWYKRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVEN 738
Query: 197 FSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMH 256
+++++EF++ +G ++FLG+++ ++ EG + Q KY + LL+ + + PM
Sbjct: 739 LKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMD 798
Query: 257 PTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKR 316
P L KE + YR ++G LLYL +RPDI F+VH ++F S P + H+ A +
Sbjct: 799 PNLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHK 858
Query: 317 ILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQ 376
+LRYLKG GLMY +SE L+G+ DAD+ + R+S G C +LG++L++W SK+Q
Sbjct: 859 VLRYLKGNPGQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQ 918
Query: 377 STIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHS 435
S ++ S+ E+EY S A + +++W++ L+D + + ++CDN +A+ L+ NP+ H
Sbjct: 919 SVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHE 978
Query: 436 RAKHIEVKYHFIRGYVQ 452
R KHIE+ H +R ++
Sbjct: 979 RTKHIEIDCHTVRDQIK 995
>At4g10690 retrotransposon like protein
Length = 1515
Score = 333 bits (854), Expect = 1e-91
Identities = 170/429 (39%), Positives = 263/429 (60%), Gaps = 4/429 (0%)
Query: 22 PENV-HVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILL 80
PE V ++G KWVF+ KLN G + R K RLVA+GY Q+EG+DY ET++PV R + +
Sbjct: 954 PEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSI 1013
Query: 81 ISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAP 140
+ + + L Q+DVK+AFL+ + + V++ QPPGFED +PD+V KLKK++Y LKQAP
Sbjct: 1014 LHVATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFEDPSRPDYVCKLKKAIYDLKQAP 1073
Query: 141 RAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEFSKM 200
RAW+++ SS+LL+ F+ D +LF D++ + +YVDD+I N L ++ +
Sbjct: 1074 RAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNI 1133
Query: 201 MQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCI 260
+ EF M MG L YFLGIQ +G ++ Q KYT +LL M + + TP+ +
Sbjct: 1134 LSTEFRMKDMGALHYFLGIQAHYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQLDLL 1193
Query: 261 LEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRY 320
+ +R + G L YLT +RPDI F+V+ + P + +KRIL Y
Sbjct: 1194 QGNNKPFPE--PTYFRRLAGKLQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHY 1251
Query: 321 LKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQSTIA 380
LKGT+ +G+ ++ L Y D+D+AG + R+ST G C FLG N++SW++KR T++
Sbjct: 1252 LKGTMTMGINLSSNTDSVLRCYSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVS 1311
Query: 381 LSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKH 439
S+ EAEY + + ++++ W+ L++ + + IP +YCDN +A+ LS NP LHSR+KH
Sbjct: 1312 KSSTEAEYRTLSFAASEVSWIGFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKH 1371
Query: 440 IEVKYHFIR 448
+V Y+++R
Sbjct: 1372 FQVDYYYVR 1380
>At4g23160 putative protein
Length = 1240
Score = 332 bits (851), Expect = 3e-91
Identities = 173/432 (40%), Positives = 256/432 (59%), Gaps = 5/432 (1%)
Query: 22 PENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLI 81
P N IG KWV++ K N G + R K RLVA+GY+QQEGID+ ETF+PV +L ++ L++
Sbjct: 121 PPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLIL 180
Query: 82 SFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFE----DEKKPDHVFKLKKSLYGLK 137
+ S +N LHQ+D+ +AFLNG + +E+Y+ PPG+ D P+ V LKKS+YGLK
Sbjct: 181 AISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLK 240
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QA R W+ + S L+ FV+ D T F K L V +YVDDII S N + E
Sbjct: 241 QASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDEL 300
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
+++ F++ +G LKYFLG+++ ++ G I Q KY +LL + +L + PM P
Sbjct: 301 KSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDP 360
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+ V K YR +IG L+YL +R DI F+V+ ++F PR H AV +I
Sbjct: 361 SVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKI 420
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
L Y+KGT+ GL Y +E +L + DA + + R+ST G C FLG++L+SW SK+Q
Sbjct: 421 LHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQ 480
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSR 436
++ S+AEAEY + + + +M+W+ + Q+ L ++CDNTAAI ++ N + H R
Sbjct: 481 VVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHER 540
Query: 437 AKHIEVKYHFIR 448
KHIE H +R
Sbjct: 541 TKHIESDCHSVR 552
>At1g47650 hypothetical protein
Length = 1409
Score = 330 bits (847), Expect = 7e-91
Identities = 169/436 (38%), Positives = 263/436 (59%), Gaps = 4/436 (0%)
Query: 17 DLTKKPENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEA 76
++T P +G KWVF K G + R K RLVA+GY+Q+EG+DYT+TF+PVA++
Sbjct: 761 EITTLPAGKKAVGCKWVFSLKFLADGSLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTT 820
Query: 77 IILLISFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFEDEK----KPDHVFKLKKS 132
I LL+ S + L Q+DV +AFLNG + +E+Y+ P G+ K P+ V +LK+S
Sbjct: 821 IKLLLKISASKKWFLKQLDVSNAFLNGELEEEIYMKLPEGYAARKGITLPPNSVCRLKRS 880
Query: 133 LYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQS 192
+YGLKQA R W+++ S+ LL+ F + D TLF K Y + +IV +YVDDI S ++
Sbjct: 881 IYGLKQASRQWFKKFSASLLDLGFKKTHGDHTLFIKEYDGEFVIVLVYVDDIAIASTSEG 940
Query: 193 LCKEFSKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAK 252
+ ++ +Q F++ +G+LKYFLG+++ +T G I Q KY ELL M+
Sbjct: 941 AAIQLTQDLQQRFKLRDLGDLKYFLGLEIARTEAGISICQRKYALELLASTGMVNCKPVS 1000
Query: 253 TPMHPTCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLT 312
PM P + K D ++ YR ++G L+YLT +R DI F+V+ +F S PR +HL
Sbjct: 1001 VPMIPNVKMMKTDGDLLDDREQYRRIVGKLMYLTITRLDITFAVNKLCQFSSAPRTSHLQ 1060
Query: 313 AVKRILRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWA 372
A R+L+Y+KG++ GL Y +++ L G+ D+D+A R+ST G F+G +L+SW
Sbjct: 1061 AAYRVLQYIKGSVGQGLFYSASADLTLKGFADSDWASCPDSRRSTTGFSMFVGDSLISWR 1120
Query: 373 SKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPI 432
SK+Q ++ S+AEAEY + A+ + +++W+ L + +Y D+T AI ++ NP+
Sbjct: 1121 SKKQHVVSRSSAEAEYRALALVTCELVWLHTLLMSLKASYLVPVLYSDSTTAIYIATNPV 1180
Query: 433 LHSRAKHIEVKYHFIR 448
H R KHIE+ H +R
Sbjct: 1181 FHERTKHIELDCHTVR 1196
>At4g17450 retrotransposon like protein
Length = 1433
Score = 327 bits (837), Expect = 1e-89
Identities = 170/438 (38%), Positives = 260/438 (58%), Gaps = 9/438 (2%)
Query: 22 PENVHVIGTKWVFRNKLNEKGDVVRNKERLVAQGYSQQEGIDYTETFAPVARLEAIILLI 81
P N IG KWVF K N G + R K RLVA+GY+Q+EG+DY ETF+PVA+L ++ +++
Sbjct: 952 PPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMML 1011
Query: 82 SFSLNHNIILHQMDVKSAFLNGYISKEVYVHQPPGFED---EKKPDH-VFKLKKSLYGLK 137
+ +HQ+D+ +AFLNG + +E+Y+ PPG+ D E P H + +L KS+YGLK
Sbjct: 1012 LLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRLHKSIYGLK 1071
Query: 138 QAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVKIYVDDIIFGSANQSLCKEF 197
QA R WY +LS+ L F + D TLF K ++ V +YVDDI+ S + +F
Sbjct: 1072 QASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQF 1131
Query: 198 SKMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHP 257
+ +++ F++ +G KYFLGI++ ++ +G I Q KY ELL L S + P+ P
Sbjct: 1132 TAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDP 1191
Query: 258 TCILEKEDTSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRI 317
+ L KED YR ++G L+YL +RPDI ++V+ +F P HL+AV ++
Sbjct: 1192 SVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKV 1251
Query: 318 LRYLKGTINLGLMYKKTSEYKLSGYCDADYAGDRTERKSTFGNCQFLGSNLVSWASKRQS 377
LRYLKGT+ GL Y ++ L GY D+D+ R+ C F+G LVSW SK+Q
Sbjct: 1252 LRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQD 1311
Query: 378 TIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIP---IYCDNTAAISLSKNPILH 434
T+++STAEAE+ + + + +M+W+ +D+++ IP +YCDNTAA+ + N + H
Sbjct: 1312 TVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKV--PFIPPAYLYCDNTAALHIVNNSVFH 1369
Query: 435 SRAKHIEVKYHFIRGYVQ 452
R K +E+ + R V+
Sbjct: 1370 ERTKFVELDCYKTREAVE 1387
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,959,688
Number of Sequences: 26719
Number of extensions: 415149
Number of successful extensions: 1158
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 135
length of query: 453
length of database: 11,318,596
effective HSP length: 103
effective length of query: 350
effective length of database: 8,566,539
effective search space: 2998288650
effective search space used: 2998288650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0359.2