BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0344.6
         (242 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g21860 unknown protein                                              30  1.2
At2g05360 hypothetical protein                                         29  2.0
At4g28840 putative protein                                             28  4.4
At5g09410 Calmodulin-binding transcription activator 1 (CAMTA1)        28  5.8
At2g26890 unknown protein                                              27  7.5
At5g53280 unknown protein                                              27  9.9

>At2g21860 unknown protein
          Length = 522

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 46/202 (22%), Positives = 84/202 (40%), Gaps = 34/202 (16%)

Query: 11  NNSEE------NDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPY 64
           NNSE       N  N++  +   S P +  N++  T +   N D E+  V K+  V   +
Sbjct: 145 NNSESVNWIQTNSKNVKNMICFESSPNLM-NRLGGTDVGSVNKDKEVTEVVKT--VGDAW 201

Query: 65  QSISILDSR-----IANQHVRKYGYLHIGLVQVAVKPLT-RLRYCDLPILICLRDKRMLR 118
           +  +  D R     I N ++R    L   L       L+  ++ C   IL CL D     
Sbjct: 202 ERRNSDDIRFCLLVIINAYIRPVPVLQ-NLRSKGFSTLSCMVKNCGPQILNCLLDPNC-- 258

Query: 119 FHESVVAVLESNIQNGPAYFNCFSSYP--------VCLRDPHVTTCVDLDIKIPNEMFID 170
             +++  + + +  +    + C +SY         +C+   H   C++LD KIP + +  
Sbjct: 259 -RKALQCLNQCSPVDQVCSYRCIASYEGPYFEAFSLCVLQKH--NCLELDAKIPEKPY-- 313

Query: 171 GIPPVSIM--YRFCYKVTDNLF 190
            +PP++       C+   ++LF
Sbjct: 314 -VPPMTSFRGKELCHDTAEDLF 334


>At2g05360 hypothetical protein
          Length = 358

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 72  SRIANQHVRKYGYLHIGLVQVAVKPLTRLRYCDLPILICLRDKRMLRFHESVVAVLESNI 131
           SR+  +       L +G+VQV +  + RL+ C   +  CL +  +L+    +   ++S I
Sbjct: 226 SRLLKEGHTNNNILQVGIVQVGIVQVCRLQICLQEVCFCLYE--LLQTTTLLRLQVKSKI 283

Query: 132 QNGPAYFN 139
             GP+  N
Sbjct: 284 LTGPSITN 291


>At4g28840 putative protein
          Length = 151

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 12 NSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPYQSI 67
          N  +     ++ L    + KIR +  Y  + F   P Y   T ++   +QG Y SI
Sbjct: 24 NGSDKPKQPQRGLGVAQLEKIRLHGEYNCNSFNTYPSYHPSTYQEDVRIQGGYPSI 79


>At5g09410 Calmodulin-binding transcription activator 1 (CAMTA1)
          Length = 1007

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 15/61 (24%), Positives = 29/61 (46%), Gaps = 5/61 (8%)

Query: 155 TCVDLDIKIPNEMFIDGI-----PPVSIMYRFCYKVTDNLFGIKAVRDYTVNETEVTEIN 209
           +C+  ++++P E+ +DG+     PP +  +   Y    N F    VR++        +IN
Sbjct: 448 SCMFGEVEVPAEILVDGVLCCHAPPHTAGHVPFYVTCSNRFACSEVREFDFLSGSTQKIN 507

Query: 210 A 210
           A
Sbjct: 508 A 508


>At2g26890 unknown protein
          Length = 2535

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 15   ENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPYQSI 67
            E  SN+ +++QN    K++    Y+     ++PD   +  EK  AVQ  Y+ +
Sbjct: 1505 EEISNISKQIQNLDEEKLKRQ--YRKLAMRYHPDKNPEGREKFLAVQKAYECL 1555


>At5g53280 unknown protein
          Length = 272

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 14  EENDSNLEQKLQNWSIPKIRTN-QVYKTSIFEFNPDYEIKTVEKSFAVQGPYQSISILDS 72
           ++NDS +++     S+  IRT  +  +  +  F+  +  +  EK  A+    QS  +L  
Sbjct: 72  DDNDSTIQEAK---SLNAIRTALENLEDQLEFFHTIHTQQRTEKDVAIARLEQSRILLAM 128

Query: 73  RIANQHVRKYGYLHIGLVQV 92
           R+A  H + YG L   L  V
Sbjct: 129 RLAEHHGKNYGVLEEALAFV 148


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,424,109
Number of Sequences: 26719
Number of extensions: 211922
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 6
length of query: 242
length of database: 11,318,596
effective HSP length: 96
effective length of query: 146
effective length of database: 8,753,572
effective search space: 1278021512
effective search space used: 1278021512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)