BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0344.4
         (242 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g21860 unknown protein                                              34  0.081
At2g34040 unknown protein                                              27  9.9

>At2g21860 unknown protein
          Length = 522

 Score = 33.9 bits (76), Expect = 0.081
 Identities = 46/189 (24%), Positives = 80/189 (41%), Gaps = 38/189 (20%)

Query: 11  NNSEE------NDSNLEQKLQNWSIPKIRTNQVYKTSIFEFNPDYEIKTVEKSFAVQGPY 64
           NNSE       N  N++  +   S P +  N++  T +   N D E+  V K+  V   +
Sbjct: 145 NNSESVNWIQTNSKNVKNMICFESSPNLM-NRLGGTDVGSVNKDKEVTEVVKT--VGDAW 201

Query: 65  QRISILDSR-----IVNQHVRKYRDLHIGLVQLAVKPLTRL----RYCDLPILICLRDKR 115
           +R +  D R     I+N ++R    L      L  K  + L    + C   IL CL D  
Sbjct: 202 ERRNSDDIRFCLLVIINAYIRPVPVLQ----NLRSKGFSTLSCMVKNCGPQILNCLLDPN 257

Query: 116 MLRFHESVLAVLECNIQNGPAYFNCFPSYP--------VCLRDPHVTTCVDLDIKIPNEM 167
                +++  + +C+  +    + C  SY         +C+   H   C++LD KIP + 
Sbjct: 258 C---RKALQCLNQCSPVDQVCSYRCIASYEGPYFEAFSLCVLQKH--NCLELDAKIPEKP 312

Query: 168 FIDGIPPVS 176
           +   +PP++
Sbjct: 313 Y---VPPMT 318


>At2g34040 unknown protein
          Length = 553

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 26/90 (28%), Positives = 38/90 (41%), Gaps = 9/90 (10%)

Query: 135 PAYFNCFPSYPVCLRDPHVTTCVDLDIKIPNEMFIDGIPPVSIMYRFCYKVTDNLSGIKA 194
           P YF  FPS      D H+    D D+ +     I G+P       FC    D LS I  
Sbjct: 57  PRYFKFFPSLSTEAFDAHMDCIDDGDLGV-RVQAIRGLP------LFCKDTPDILSKIVD 109

Query: 195 VRDYTVNETEVTEINAENSSRITRKILKHD 224
           V    +N  E  E +A + + ++  +L+ D
Sbjct: 110 VLVQLLNTEEPVERDAVHKALMS--LLRQD 137


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,461,343
Number of Sequences: 26719
Number of extensions: 216125
Number of successful extensions: 481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 2
length of query: 242
length of database: 11,318,596
effective HSP length: 96
effective length of query: 146
effective length of database: 8,753,572
effective search space: 1278021512
effective search space used: 1278021512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)