Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0343.7
         (342 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g20850 RAD51 homolog (AtRAD51)                                     600  e-172
At3g22880 meiotic recombination protein (AtDMC1)                      338  2e-93
At2g45280 RAD51Calpha DNA repair-recombination factor (RAD51Calpha)   125  3e-29
At5g57450 putative protein                                             96  4e-20
At2g28560 putative RAD51B-like DNA repair protein                      74  2e-13
At1g07745 unknown protein                                              72  4e-13
At1g79050 nuclear-encoded chloroplast DNA repair protein like          54  2e-07
At2g19490 putative recA protein                                        51  8e-07
At3g10140 RecA protein                                                 49  3e-06
At3g24870 hypothetical protein                                         34  0.13
At3g24880 hypothetical protein                                         32  0.50
At4g30470 cinnamoyl-CoA reductase - like protein                       31  0.86
At3g32920 recA, putative                                               31  1.1
At1g08130 DNA ligase like protein                                      30  1.5
At5g64520 putative protein                                             30  1.9
At1g52130                                                              28  5.5
At1g32270 syntaxin, putative                                           28  5.5
At3g19600 hypothetical protein                                         28  9.5

>At5g20850 RAD51 homolog (AtRAD51)
          Length = 342

 Score =  600 bits (1546), Expect = e-172
 Identities = 301/342 (88%), Positives = 324/342 (94%), Gaps = 3/342 (0%)

Query: 1   MEQQRHQKTAQQQPQEEGEEIQHGPLPIEQLQASGIASIDVKKLKDAGICTVESVAYTPR 60
           MEQ+R+Q   QQQ   + EE QHGP P+EQLQA+GIAS+DVKKL+DAG+CTVE VAYTPR
Sbjct: 4   MEQRRNQNAVQQQ---DDEETQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPR 60

Query: 61  KDLLQIKGISEAKVDKIVEAASKLVPMGFTSASELHVQRESIIQITTGSRELDKILDGGI 120
           KDLLQIKGIS+AKVDKIVEAASKLVP+GFTSAS+LH QR+ IIQIT+GSRELDK+L+GGI
Sbjct: 61  KDLLQIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKVLEGGI 120

Query: 121 ETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180
           ETGSITELYGEFRSGKTQLCHTLCVTCQLP+DQGGGEGKAMYIDAEGTFRPQRLLQIADR
Sbjct: 121 ETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQIADR 180

Query: 181 FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGE 240
           FGLNGADVLENVAYARAYNTDHQSRLLLEAASMM+ETRFA++IVDSATALYRTDFSGRGE
Sbjct: 181 FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIVDSATALYRTDFSGRGE 240

Query: 241 LSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATT 300
           LSARQMHLAKFLRSLQKLADEFGVA+VITNQVV+QVDGSA+FAGPQ KPIGGNIMAHATT
Sbjct: 241 LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAGPQFKPIGGNIMAHATT 300

Query: 301 TRLALRKGRGEERICKVISSPCLAEAEARFQILAEGVSDVKD 342
           TRLALRKGR EERICKVISSPCL EAEARFQI  EGV+D KD
Sbjct: 301 TRLALRKGRAEERICKVISSPCLPEAEARFQISTEGVTDCKD 342


>At3g22880 meiotic recombination protein (AtDMC1)
          Length = 344

 Score =  338 bits (868), Expect = 2e-93
 Identities = 177/344 (51%), Positives = 240/344 (69%), Gaps = 3/344 (0%)

Query: 1   MEQQRHQKTAQQQ--PQEEGEEIQHGPLPIEQLQASGIASIDVKKLKDAGICTVESVAYT 58
           M   + ++T+Q Q   +EE +E +     I++L A GI + DVKKL++AGI T   +   
Sbjct: 2   MASLKAEETSQMQLVEREENDEDEDLFEMIDKLIAQGINAGDVKKLQEAGIHTCNGLMMH 61

Query: 59  PRKDLLQIKGISEAKVDKIVEAASKLVPMGFTSASELHVQRESIIQITTGSRELDKILDG 118
            +K+L  IKG+SEAKVDKI EAA K+V  G+ + S+  ++R+S+++ITTG + LD +L G
Sbjct: 62  TKKNLTGIKGLSEAKVDKICEAAEKIVNFGYMTGSDALIKRKSVVKITTGCQALDDLLGG 121

Query: 119 GIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIA 178
           GIET +ITE +GEFRSGKTQL HTLCVT QLP +  GG GK  YID EGTFRP R++ IA
Sbjct: 122 GIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIA 181

Query: 179 DRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGR 238
           +RFG++   VL+N+ YARAY  +HQ  LLL  A+ M E  F ++IVDS  AL+R DF+GR
Sbjct: 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGR 241

Query: 239 GELSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHA 298
           GEL+ RQ  LA+ L  L K+A+EF VA+ +TNQV++   G    + P+ KP GG+++AHA
Sbjct: 242 GELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPK-KPAGGHVLAHA 300

Query: 299 TTTRLALRKGRGEERICKVISSPCLAEAEARFQILAEGVSDVKD 342
            T RL  RKG+G+ R+CKV  +P LAEAEA FQI   G++D KD
Sbjct: 301 ATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADAKD 344


>At2g45280 RAD51Calpha DNA repair-recombination factor (RAD51Calpha)
          Length = 363

 Score =  125 bits (314), Expect = 3e-29
 Identities = 98/323 (30%), Positives = 157/323 (48%), Gaps = 36/323 (11%)

Query: 43  KLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIVEAA-------SKLVPMGFTSASEL 95
           KL  AG   + S+A     DL +   I+E +  +I++ A       S+ +  G  +A ++
Sbjct: 36  KLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNGSRSLINGAKNAWDM 95

Query: 96  HVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGG 155
             + ES+ +ITT   +LD IL GGI    +TE+ G    GKTQ+   L V  Q+P + GG
Sbjct: 96  LHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGG 155

Query: 156 GEGKAMYIDAEGTFRPQRLLQIAD--------------------RFGLNGADVLENVAYA 195
             GKA+YID EG+F  +R LQIA+                    +  +   D+LEN+ Y 
Sbjct: 156 LGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYF 215

Query: 196 RAYNTDHQSRLLLEAASMMVETR-FAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRS 254
           R  +   Q  L+      + E +   V+IVDS T  +R D+    +L+ R   L++    
Sbjct: 216 RVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYD---DLAQRTRVLSEMALK 272

Query: 255 LQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERI 314
             KLA +F +A+V+ NQV ++    +     Q+    G+  +H+ T R+ L    G+ER 
Sbjct: 273 FMKLAKKFSLAVVLLNQVTTKFSEGSF----QLALALGDSWSHSCTNRVIL-YWNGDERY 327

Query: 315 CKVISSPCLAEAEARFQILAEGV 337
             +  SP L  A A + + + G+
Sbjct: 328 AYIDKSPSLPSASASYTVTSRGL 350


>At5g57450 putative protein
          Length = 304

 Score = 95.5 bits (236), Expect = 4e-20
 Identities = 79/284 (27%), Positives = 126/284 (43%), Gaps = 46/284 (16%)

Query: 104 QITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
           ++TTG   LD  L GGI   S+TE+  E   GKTQLC  L +  QLP+  GG  G ++Y+
Sbjct: 20  KLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYL 79

Query: 164 DAEGTFRPQRLLQIADRFGLNGADVLEN--------VAYARAYNTDHQSRLL--LEAASM 213
            +E  F  +RL Q++  F  +   +  N        V     ++ DH   ++  ++    
Sbjct: 80  HSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVG 139

Query: 214 MVETRF--AVMIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAIVITN 270
             +TRF   ++++DS  AL+R++F     +L  R     K    L++LA +F +AIVITN
Sbjct: 140 NSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITN 199

Query: 271 QVVSQVDGS-------------AVFAGPQVKPIGGNIMAHATTTRLALRK---------- 307
           QV   V+ S                +G +V P  G   A+   +R  + +          
Sbjct: 200 QVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFISRSDGSIVKDRS 259

Query: 308 ----------GRGEERICKVISSPCLAEAEARFQILAEGVSDVK 341
                      R  +R   ++ SP L  +   F I  EG+  V+
Sbjct: 260 EKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQ 303


>At2g28560 putative RAD51B-like DNA repair protein
          Length = 353

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 81/322 (25%), Positives = 134/322 (41%), Gaps = 50/322 (15%)

Query: 49  ICTVESVAYTPRKDLLQIKGISEAKVDKIVEAASKLVPMGFTSASELH----VQRESII- 103
           I T +        +L+++  +   ++   +   S+       S S L     V+ E +  
Sbjct: 24  IITAKDALSMTEFELMELLDVGMKEIRSAISFISEATSPPCQSVSSLFFFKKVENEHLSG 83

Query: 104 QITTGSRELDKILDGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 163
            + T  + LD  L GGI  G +TEL G    GK+Q C  L ++   P+  GG +G+ +YI
Sbjct: 84  HLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 143

Query: 164 DAEGTFRPQRLLQIA-----DRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETR 218
           D E  F  +R++++      + F L G  + + V    A         + E  + +++ +
Sbjct: 144 DVESKFSSRRVIEMGLESFPEVFHLKG--MAQEVVCGTAI-------CIQELKNSILQNQ 194

Query: 219 FAVMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQ--- 275
             ++++DS TAL     SG  +  A++     +  S  K         ++TNQV SQ   
Sbjct: 195 VKLLVIDSMTAL----LSGENKPGAQRQPQLGWHISFLKYE-------LVTNQVRSQNRD 243

Query: 276 ---------------VDGSAVFAGPQVKPIGGNIMAHATTTRLALRKGRGEERICKVISS 320
                           D +  +    V  +G N  AHA T RL L    G +RI KV  S
Sbjct: 244 ETSQYSFQAKVKDEFKDNTKTYDSHLVAALGIN-WAHAVTIRLVLEAKSG-KRIIKVAKS 301

Query: 321 PCLAEAEARFQILAEGVSDVKD 342
           P        F I + G+S + D
Sbjct: 302 PMSPPLAFPFHITSAGISLLSD 323


>At1g07745 unknown protein
          Length = 296

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 23/239 (9%)

Query: 77  IVEAASKLVPMGFTSASELHVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGK 136
           ++E   + +  G     +LH  + ++   +TG +E D +L GG   G +TEL G   SGK
Sbjct: 38  LIERQCRPLVNGLKLLEDLHRNKHTL---STGDKETDSLLQGGFREGQLTELVGPSSSGK 94

Query: 137 TQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI--ADRFGLNGADVLENVAY 194
           TQ C     +           G+ +Y+D   +F  +R+ Q   +      G  V+  +  
Sbjct: 95  TQFCMQAAASV-----AENHLGRVLYLDTGNSFSARRIAQFICSSSDATLGQKVMSRILC 149

Query: 195 ARAY------NTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHL 248
              Y      +T     + L     + E+R  +++VDS ++L      G G      M  
Sbjct: 150 HTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGRALMVA 209

Query: 249 AKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRK 307
             +L  L+KLA E  +AI++TN  V      A   G + KP  G         RL+L +
Sbjct: 210 IGYL--LKKLAHEHSIAILVTNHTV-----GAGGEGGKTKPALGETWKSIPHVRLSLSR 261


>At1g79050 nuclear-encoded chloroplast DNA repair protein like
          Length = 439

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 71/254 (27%), Positives = 109/254 (41%), Gaps = 45/254 (17%)

Query: 106 TTGSRELDKILDGGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMYID 164
           ++G   LD  L GG+  G + E+YG   SGKT L  H +    +L        G AM +D
Sbjct: 118 SSGILTLDLALGGGLPKGRVVEIYGPESSGKTTLALHAIAEVQKL-------GGNAMLVD 170

Query: 165 AEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMI- 223
           AE  F P     +       G DV EN+   +  N      + LE A  M  +    +I 
Sbjct: 171 AEHAFDPAYSKAL-------GVDV-ENLIVCQPDN----GEMALETADRMCRSGAVDLIC 218

Query: 224 VDSATALY-RTDFSGRGELSARQMHL-----AKFLRSLQKLADEFGVAIVITNQVVSQVD 277
           VDS +AL  R +    GE+  +QM L     ++ LR +   A + G  ++  NQ+  ++ 
Sbjct: 219 VDSVSALTPRAEI--EGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI- 275

Query: 278 GSAVFAGPQVKPIGGNIMAHATTTRLALR------KGRGEE------RICKVISSPCLAE 325
               +  P+V   GG  +    + RL +R        +G+E      R+    S      
Sbjct: 276 -GVYYGNPEVTS-GGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRARVRVQKSKVSRPY 333

Query: 326 AEARFQIL-AEGVS 338
            +A F+I+  EGVS
Sbjct: 334 KQAEFEIMFGEGVS 347


>At2g19490 putative recA protein
          Length = 376

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 61/230 (26%), Positives = 99/230 (42%), Gaps = 36/230 (15%)

Query: 97  VQRESIIQITTGSRELDKILD-GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGG 155
           V   ++   +TGS  LD  L  GG+  G + E+YG   SGKT L   +    Q    QGG
Sbjct: 31  VSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---KQGG 87

Query: 156 GEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMV 215
                +++DAE          +A   G+N  ++L +         D   + L    +++ 
Sbjct: 88  ---TCVFVDAEHALDSS----LAKAIGVNTENLLLS-------QPDCGEQALSLVDTLIR 133

Query: 216 ETRFAVMIVDSATALYRTDFSGRGELSARQ--MHLAKFLR----SLQKLADEFGVA---I 266
                V++VDS  AL       +GEL       H+A   R    +L+KL+    ++   +
Sbjct: 134 SGSVDVIVVDSVAALVP-----KGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQTLL 188

Query: 267 VITNQVVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRK----GRGEE 312
           +  NQV S++     F GP     GGN +    + RL +++     +GEE
Sbjct: 189 IFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEE 238


>At3g10140 RecA protein
          Length = 389

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 40/250 (16%)

Query: 72  AKVDKIVEAASKLVPMGFTSASELHVQR----ESIIQITTGSRELDKILD-GGIETGSIT 126
           A+ D  +  A   +   F   S+L +QR      +  I+TGS  LD  L  GG+  G + 
Sbjct: 60  AEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPKGRMV 119

Query: 127 ELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNG 185
           E+YG+  SGKT L  H +    +L        G   Y+DAE    P     +A+  G+N 
Sbjct: 120 EVYGKEASGKTTLALHIIKEAQKL-------GGYCAYLDAENAMDP----SLAESIGVNT 168

Query: 186 ADVLENVAYARAYNTDHQSRLLLEAASMMVET-RFAVMIVDSATALYRTDFSGRGELSA- 243
            ++L         +    +  +L    ++ ++    V++VDS  AL     + + EL A 
Sbjct: 169 EELL--------ISRPSSAEKMLNIVDVLTKSGSVDVIVVDSVAAL-----APQCELDAP 215

Query: 244 -----RQMHLAKFLRSLQKLADEFGVA---IVITNQVVSQVDGSAVFAGPQVKPIGGNIM 295
                R        ++L+K+    G +   IV  NQV S V  +  F   +    GGN +
Sbjct: 216 VGERYRDTQSRIMTQALRKIHYSVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNAL 275

Query: 296 AHATTTRLAL 305
                 RL +
Sbjct: 276 PFHAAIRLKM 285


>At3g24870 hypothetical protein
          Length = 1841

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 51/188 (27%)

Query: 1   MEQQRHQKTAQQQPQEEGEE----IQHGPLPIEQ--------------LQASGIASIDVK 42
           +E Q H+ TA+ Q +E+  E    +Q G + +E                  SGI    V 
Sbjct: 442 IENQSHRSTAEMQTKEKSSETEKRLQDGLVVLENDSKVGSILSENPSSTLCSGIPQASV- 500

Query: 43  KLKDAGICTV----------ESVAYTPRKDLLQIKGISEAKV---DKIVEAASKLVPMGF 89
              D   CTV          E++ + P  D + +  + E  +    +I++A  K +    
Sbjct: 501 ---DTSSCTVGNSLLSGTDIEALKHQPSSDAVMLDTVKEDAILEEARIIQAKKKRIAELS 557

Query: 90  TSASELHVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGK----TQLCHTLCV 145
              + + V+ +S         + D +L+   E   +   + + R  K    TQ+CH + +
Sbjct: 558 CGTAPVEVREKS---------QWDFVLE---EMAWLANDFAQERLWKMTAATQICHRVAL 605

Query: 146 TCQLPLDQ 153
           TCQL  ++
Sbjct: 606 TCQLRFEE 613


>At3g24880 hypothetical protein
          Length = 1843

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 51/188 (27%)

Query: 1   MEQQRHQKTAQQQPQEEGEE----IQHGPLPIEQ--------------LQASGIASIDVK 42
           +E Q H+ TA+ Q +E+  E    +Q G + +E                  SGI    V 
Sbjct: 442 IENQSHRSTAEMQTKEKSSETEKRLQDGLVVLENDSKVGSILSENPSSTLCSGIPQASV- 500

Query: 43  KLKDAGICTV----------ESVAYTPRKDLLQIKGISEAKV---DKIVEAASKLVPMGF 89
              D   CTV          E++ + P  D + +  + E  +    +I++A  K +    
Sbjct: 501 ---DTSSCTVGNSLLSGTDIEALKHQPSSDAVMLDTVKEDAILEEARIIQAKKKRIAELS 557

Query: 90  TSASELHVQRESIIQITTGSRELDKILDGGIETGSITELYGEFRSGK----TQLCHTLCV 145
              + + V+ +S         + D +L+   E   +   + + R  K     Q+CH + +
Sbjct: 558 CGTAPVEVREKS---------QWDFVLE---EMAWLANDFAQERLWKMTAAAQICHRVAL 605

Query: 146 TCQLPLDQ 153
           TCQL  ++
Sbjct: 606 TCQLRFEE 613


>At4g30470 cinnamoyl-CoA reductase - like protein
          Length = 303

 Score = 31.2 bits (69), Expect = 0.86
 Identities = 25/91 (27%), Positives = 44/91 (47%), Gaps = 3/91 (3%)

Query: 30  QLQASGI-ASIDVKKLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIVEAASKLVPMG 88
           Q+  +G+ A +DVK L D  I   E V+   R         +E +  K+VE+ S L+PM 
Sbjct: 212 QMYENGVLAYVDVKFLADVHIRAFEDVSACGRYFCFNQIVNTEEEALKLVESLSPLIPMP 271

Query: 89  FTSASELHVQRESIIQITTGSRELDKILDGG 119
               +E+H     + +    + +L K+++ G
Sbjct: 272 PRYENEMH--GSEVYEERLRNNKLSKLVEAG 300


>At3g32920 recA, putative
          Length = 229

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/44 (40%), Positives = 24/44 (53%), Gaps = 1/44 (2%)

Query: 97  VQRESIIQITTGSRELDKILD-GGIETGSITELYGEFRSGKTQL 139
           V   ++   +TGS  LD  L  GG+  G + E+YG   SGKT L
Sbjct: 7   VSPRNVPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTAL 50


>At1g08130 DNA ligase like protein
          Length = 790

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 173 RLLQIADRFGLNGADVLENVAYARAYNTDH-----QSRLLLEAASMMVETRFAVMIV 224
           RLLQ   R G +G  VL  +  A  YN +H      ++  LE A+ +V+  F V+ V
Sbjct: 332 RLLQAKLRLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPV 388


>At5g64520 putative protein
          Length = 403

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 120 IETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQG----GGEGK-AMYIDAEGTFRPQRL 174
           +  G++ E+ G   S KTQ+     ++C LP        GG GK  +++D +  F   RL
Sbjct: 40  LRAGNVVEITGASTSAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRL 99

Query: 175 LQI 177
            Q+
Sbjct: 100 SQM 102


>At1g52130 
          Length = 483

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 21/78 (26%), Positives = 39/78 (49%), Gaps = 7/78 (8%)

Query: 232 RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQVKPIG 291
           R D+   G++ +R+ H  K + ++Q    E G  +   N+V++ V+G A      +    
Sbjct: 345 RFDYDDDGKVESRE-HGPKIVAAVQ----EGGFVLDYPNEVITSVEGIATVVNTGLSFST 399

Query: 292 GNIMAHATTTRLALRKGR 309
           GN+M  + T + +  KGR
Sbjct: 400 GNVMIKSLTFKTS--KGR 415


>At1g32270 syntaxin, putative
          Length = 416

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 44  LKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIVEAASKLVPMGFTSASELHVQRES 101
           +KD      E+     R+D+ Q K I++AK+ K  EAA K     F  A  + V+RE+
Sbjct: 164 VKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALK----EFQKAQHITVERET 217


>At3g19600 hypothetical protein
          Length = 601

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 40/194 (20%), Positives = 69/194 (34%), Gaps = 12/194 (6%)

Query: 124 SITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL 183
           S + L      G   +CH +C+ C+  + +   +G+A     +G       + +   F  
Sbjct: 319 SSSSLSSSSSCGHWYICHGICIGCKSTVKK--SQGRAFDYIFDGLQLSHEAVALTKCFTT 376

Query: 184 NGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSA 243
             + + E   +    + DH     +   S+    ++ +    SAT          G+   
Sbjct: 377 KLSCLNEKKLHL-VLDLDHTLLHTVMVPSLSQAEKYLIEEAGSATRDDLWKIKAVGDPME 435

Query: 244 RQMHLAKFLRSLQKLADEFGVAIVIT-------NQVVSQVDGSAVFAGPQVKPIGGNIMA 296
               L  FLR   K A+EF    V T        QV+  +D   ++ G +V  I      
Sbjct: 436 FLTKLRPFLRDFLKEANEFFTMYVYTKGSRVYAKQVLELIDPKKLYFGDRV--ITKTESP 493

Query: 297 HATTTRLALRKGRG 310
           H  T    L + RG
Sbjct: 494 HMKTLDFVLAEERG 507


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,724,642
Number of Sequences: 26719
Number of extensions: 268278
Number of successful extensions: 787
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 18
length of query: 342
length of database: 11,318,596
effective HSP length: 100
effective length of query: 242
effective length of database: 8,646,696
effective search space: 2092500432
effective search space used: 2092500432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)


Lotus: description of TM0343.7