BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0343.1
(338 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10690 retrotransposon like protein 330 9e-91
At1g31210 putative reverse transcriptase 327 7e-90
At4g27210 putative protein 311 4e-85
At4g02960 putative polyprotein of LTR transposon 307 6e-84
At1g53810 305 2e-83
At1g59265 polyprotein, putative 303 9e-83
At1g58889 polyprotein, putative 303 9e-83
At2g20460 putative retroelement pol polyprotein 301 3e-82
At1g34090 putative protein 300 7e-82
At1g44510 polyprotein, putative 296 1e-80
At2g04820 putative retroelement pol polyprotein 292 2e-79
At4g16870 retrotransposon like protein 290 8e-79
At4g27200 putative protein 287 7e-78
At4g10990 putative retrotransposon polyprotein 276 1e-74
At1g58140 hypothetical protein 275 3e-74
At2g16000 putative retroelement pol polyprotein 275 3e-74
At1g48710 hypothetical protein 274 6e-74
At3g61330 copia-type polyprotein 272 2e-73
At2g15870 putative retroelement pol polyprotein 271 5e-73
At2g23330 putative retroelement pol polyprotein 265 3e-71
>At4g10690 retrotransposon like protein
Length = 1515
Score = 330 bits (845), Expect = 9e-91
Identities = 162/333 (48%), Positives = 219/333 (65%), Gaps = 2/333 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF++ +G D+ ++LLYVDD+IL ++ L + + +L++EF MKD+G L YFLGI
Sbjct: 1095 DPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQA 1154
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
H GLFLSQ Y S+++ AGM+ C+ TP+ L + P + T +R LAG
Sbjct: 1155 HYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQLD--LLQGNNKPFPEPTYFRRLAGK 1212
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV VC MHAP LKR+L Y++GT+T G++L + + L
Sbjct: 1213 LQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRC 1272
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DW GC DTRRST G+C FLG N+ISWS+KR PT+S+SS EAEYR ++ SE WI
Sbjct: 1273 YSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWI 1332
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL E+ P Q ++CDN+SA+YLS NP H R+KH ++D ++VRE+VA G V H
Sbjct: 1333 GFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKH 1392
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
+P+ Q+ADIFTK LP+ F D R L V PP
Sbjct: 1393 IPASQQLADIFTKSLPQAPFCDLRFKLGVVLPP 1425
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 327 bits (837), Expect = 7e-90
Identities = 165/339 (48%), Positives = 220/339 (64%), Gaps = 3/339 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ + I Y+LLYVDDI+L S +L + + L + F+MKDLGP YFLGI +
Sbjct: 1035 DPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQI 1094
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+A GLFL Q+ YA++I+ +AGM+ CNP TP+ Q+L + + + T +RSLAG
Sbjct: 1095 EDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLP--QQLDNLNSELFAEPTYFRSLAGK 1152
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV +C MH+P T LKR+LRY++GT+ GL + + L +
Sbjct: 1153 LQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSA 1212
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+D GC +TRRST+G+C+ LG NLISWS+KRQPT+S SS EAEYR + E WI
Sbjct: 1213 YSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWI 1272
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL +L P T V+CDN+SA+YLS NP H R+KH + D H++RE+VA G H
Sbjct: 1273 SFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQH 1332
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV-GEPPASTAG 338
+ + Q+AD+FTK LPR F D RS L V G P S G
Sbjct: 1333 ISATFQLADVFTKSLPRRAFVDLRSKLGVSGSPTPSLRG 1371
>At4g27210 putative protein
Length = 1318
Score = 311 bits (796), Expect = 4e-85
Identities = 155/333 (46%), Positives = 199/333 (59%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI+ ++ +LLYVDD+++ +S S +A L EF M D+G L YFLGI V
Sbjct: 889 DPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQV 948
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R GLF+SQ YA +++ A M C P TP+ + D T +RS+AG
Sbjct: 949 QRQQNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGK 1008
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV VC MH P LKR+LRY++GT+T G+ L +
Sbjct: 1009 LQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQA 1068
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DWG C TRRS G C F+G NL+SWSSK+ PT+SRSS EAEY+ +++ SE W+
Sbjct: 1069 YSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWL 1128
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL EL PL + CDN+SA+YL+ NP H RTKH ++D HFVRE+VA V H
Sbjct: 1129 STLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKH 1188
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
+P QIADIFTK LP F R L V P
Sbjct: 1189 IPGSEQIADIFTKSLPYEAFIHLRGKLGVTLSP 1221
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 307 bits (786), Expect = 6e-84
Identities = 161/338 (47%), Positives = 209/338 (61%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ +RG I Y+L+YVDDI++ + L K + L+ F++K+ L YFLGI
Sbjct: 1115 DTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEA 1174
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R GL LSQ Y +++AR M + P ATP+ T KL+ SGT D T YR + G+
Sbjct: 1175 KRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGS 1234
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYL FTRPD+SYAV ++ +MH P +H ALKRVLRY+ GT +G+ L L +
Sbjct: 1235 LQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHA 1294
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW G D ST+GY V+LG + ISWSSK+Q + RSS EAEYR VAN SE WI
Sbjct: 1295 YSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWI 1354
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL EL LS +++CDNV A YL NPV H R KHI +D HF+R +V G RV+H
Sbjct: 1355 CSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVH 1414
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
V + Q+AD TK L RV F +F + V + P S G
Sbjct: 1415 VSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVPPSCGG 1452
>At1g53810
Length = 1522
Score = 305 bits (782), Expect = 2e-83
Identities = 153/343 (44%), Positives = 211/343 (60%), Gaps = 11/343 (3%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF++ D+ +LLYVDD+++ ++ +A L EF MKD+G + YFLGI +
Sbjct: 1091 DPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYFLGIQI 1150
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ GGLF+SQ YA +++ A MA+C+P TP+ + S+ D T +RSLAG
Sbjct: 1151 QTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFRSLAGK 1210
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV VC MH P LKR+LRY++GT++ G+ Y S + +VS
Sbjct: 1211 LQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQ-YNSNSSSVVS 1269
Query: 181 ----------YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGV 230
Y+D+D+ C +TRRS GYC F+G N+ISWSSK+QPT+SRSS EAEYR +
Sbjct: 1270 AYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEYRSL 1329
Query: 231 ANVVSESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREK 290
+ SE W+ ++L E+ L + CDN+SA+YL+ NP H RTKH ++D H++RE+
Sbjct: 1330 SETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPAFHARTKHFDVDHHYIRER 1389
Query: 291 VARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
VA V H+P Q+ADIFTK LP F R L V PP
Sbjct: 1390 VALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGVDFPP 1432
>At1g59265 polyprotein, putative
Length = 1466
Score = 303 bits (776), Expect = 9e-83
Identities = 159/335 (47%), Positives = 206/335 (61%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ +RG I Y+L+YVDDI++ + L + + L+ F++KD L YFLGI
Sbjct: 1132 DTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEA 1191
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R GL LSQ Y +++AR M + P TP+ KLS SGT D T YR + G+
Sbjct: 1192 KRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGS 1251
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYL FTRPDISYAV ++ MH P EH+ ALKR+LRY+ GT +G+ L L +
Sbjct: 1252 LQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHA 1311
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW G D ST+GY V+LG + ISWSSK+Q + RSS EAEYR VAN SE WI
Sbjct: 1312 YSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWI 1371
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL EL L++ +++CDNV A YL NPV H R KHI +D HF+R +V G RV+H
Sbjct: 1372 CSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVH 1431
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAS 335
V + Q+AD TK L R F +F S + V P S
Sbjct: 1432 VSTHDQLADTLTKPLSRTAFQNFASKIGVTRVPPS 1466
>At1g58889 polyprotein, putative
Length = 1466
Score = 303 bits (776), Expect = 9e-83
Identities = 159/335 (47%), Positives = 206/335 (61%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ +RG I Y+L+YVDDI++ + L + + L+ F++KD L YFLGI
Sbjct: 1132 DTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEA 1191
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R GL LSQ Y +++AR M + P TP+ KLS SGT D T YR + G+
Sbjct: 1192 KRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGS 1251
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYL FTRPDISYAV ++ MH P EH+ ALKR+LRY+ GT +G+ L L +
Sbjct: 1252 LQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHA 1311
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW G D ST+GY V+LG + ISWSSK+Q + RSS EAEYR VAN SE WI
Sbjct: 1312 YSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWI 1371
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL EL L++ +++CDNV A YL NPV H R KHI +D HF+R +V G RV+H
Sbjct: 1372 CSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVH 1431
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAS 335
V + Q+AD TK L R F +F S + V P S
Sbjct: 1432 VSTHDQLADTLTKPLSRTAFQNFASKIGVTRVPPS 1466
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 301 bits (772), Expect = 3e-82
Identities = 149/329 (45%), Positives = 214/329 (64%), Gaps = 1/329 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
DH+LF+ G++ +L+YVDDI++ +++ +S L + F +++LGPL YFLG+ V
Sbjct: 1126 DHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEV 1185
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R + G+ LSQ YA E++ A M C PS+ P+ +LS + G ED +YR L G
Sbjct: 1186 ARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGK 1245
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L YLT TRPDI++AV ++C AP T H+ A+ +VL+Y++GT+ GL L
Sbjct: 1246 LMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKG 1305
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
YTDADWG CPD+RRST+G+ +F+G +LISW SK+QPT+SRSSAEAEYR +A E W+
Sbjct: 1306 YTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWL 1365
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LLL L S +++ D+ +A+Y++ NPV H+RTKHIE+D H VREK+ GQ ++LH
Sbjct: 1366 STLLLALRVH-SGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLH 1424
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
V ++ Q+ADI TK L F S +S+
Sbjct: 1425 VKTKDQVADILTKPLFPYQFAHLLSKMSI 1453
>At1g34090 putative protein
Length = 761
Score = 300 bits (768), Expect = 7e-82
Identities = 149/327 (45%), Positives = 202/327 (61%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF++ + DI +LLYVDD+ + +S + + L +F MKD+G L YFLGI
Sbjct: 312 DPSLFVYIKNKDIILLLLYVDDMAITGNSSTALSNLLDELNKQFRMKDMGKLHYFLGIQA 371
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
H+GGLFLSQ Y +++ A MA C P TP+ + + D +RSLAG
Sbjct: 372 HYHSGGLFLSQQKYVEDLLITASMADCAPMPTPLPLQLNKVPNQDEQFSDQRYFRSLAGK 431
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV VC MH+P LKR+LRYV+GT T G+ + +
Sbjct: 432 LQYLTLTRPDIQFAVNYVCQKMHSPTVSDYHLLKRILRYVKGTTTMGISFAKDTDCTVRA 491
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+D+GGC TRRST+G+C F G N+ISW S++Q T++RSS EAEYR +++ +E W+
Sbjct: 492 YSDSDYGGCKRTRRSTAGFCTFFGSNIISWCSQKQETVARSSTEAEYRALSDAAAEITWL 551
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+L EL PL A ++ DN+S+IYL+ NP H+R+KH E H+VRE+VA G V H
Sbjct: 552 CKVLKELQIPLHTAPELYADNLSSIYLTANPSFHKRSKHFETHYHYVRERVALGSLTVKH 611
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSL 327
+PS Q+ADIFTK LP F R L
Sbjct: 612 IPSHVQLADIFTKSLPVGAFTTLRFKL 638
>At1g44510 polyprotein, putative
Length = 1459
Score = 296 bits (757), Expect = 1e-80
Identities = 155/335 (46%), Positives = 204/335 (60%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI+ GT + Y+L+YVDDII+ S H + ++ LA F++KD L YFLGI
Sbjct: 1125 DTSLFIYSHGTTLLYLLVYVDDIIVTGSDHKSVSAVLSSLAERFSIKDPTDLHYFLGIEA 1184
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
TR GL L Q Y ++++A+ M P ATP+ T KL+ GT DA+ YRS+ G+
Sbjct: 1185 TRTNTGLHLMQRKYMTDLLAKHNMLDAKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGS 1244
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYL FTRPDI++AV ++ MH P ++H A KRVLRY+ GT T+G+ L S L +
Sbjct: 1245 LQYLAFTRPDIAFAVNRLSQFMHQPTSDHWQAAKRVLRYLAGTTTHGIFLNSSSPIHLHA 1304
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW G ST+ Y ++LG N ISWSSK+Q +SRSS E+EYR VAN SE W+
Sbjct: 1305 FSDADWAGDSADYVSTNAYVIYLGRNPISWSSKKQRGVSRSSTESEYRAVANAASEIRWL 1364
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL ELH L + CDN+ A Y+ NPV H R KHI +D HFVR + RV H
Sbjct: 1365 CSLLTELHIRLPHGPTIFCDNIGATYICANPVFHSRMKHIALDYHFVRGMIQSRALRVSH 1424
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAS 335
V + Q+AD TK L R F RS + V + P S
Sbjct: 1425 VSTNDQLADALTKSLSRPHFLSARSKIGVRQLPPS 1459
>At2g04820 putative retroelement pol polyprotein
Length = 387
Score = 292 bits (748), Expect = 2e-79
Identities = 155/335 (46%), Positives = 206/335 (61%), Gaps = 1/335 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI++R Y+L+YVDDII+ + +L K+F LA F++KDLG LSYFLGI
Sbjct: 54 DTSLFIYKRANSYLYVLVYVDDIIITGDA-SLVKNFNVSLADRFSLKDLGALSYFLGIEA 112
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
TR GL L Q Y ++++A+ M P +TP+ T KLS SGT +DA YR + G+
Sbjct: 113 TRTKKGLHLMQRKYITDLLAKTHMLDAKPISTPMATTPKLSLHSGTILDDAKEYRMIIGS 172
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYL+FTRPDI++ V ++ MH P EH A KRVLRY+ GT ++G+ L + S
Sbjct: 173 LQYLSFTRPDIAFVVNRLSQFMHKPTDEHWQAAKRVLRYLAGTKSHGIFLRSDAPLTVHS 232
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW G ST+ Y V+ G + ISWSSK+Q SRSS EAEYR VAN SE WI
Sbjct: 233 FSDADWAGDLGDGLSTNAYIVYFGGSPISWSSKKQRRFSRSSTEAEYRAVANTASELQWI 292
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL E+ L A +V+CDN+ A YL NPV H + KH+ +D HFVR + G RV H
Sbjct: 293 CSLLSEMGISLPVAPVVYCDNMGATYLCANPVFHSKMKHVALDYHFVRGNIQTGALRVSH 352
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAS 335
+ ++ Q+AD TK L R F + + V E P S
Sbjct: 353 LSTKDQLADALTKPLHRPRFQELNYKIGVKELPPS 387
>At4g16870 retrotransposon like protein
Length = 1474
Score = 290 bits (742), Expect = 8e-79
Identities = 154/335 (45%), Positives = 201/335 (59%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI+ GT Y+L+YVDDII+ S + + + LA F++KD L YFLGI
Sbjct: 1140 DASLFIYCHGTTFVYVLVYVDDIIVTGSDKSSIDAVLTSLAERFSIKDPTDLHYFLGIEA 1199
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
TR GL L Q Y +++A+ MA P TP+ T KL+ GT DA+ YRS+ G+
Sbjct: 1200 TRTKQGLHLMQRKYIKDLLAKHNMADAKPVLTPLPTSPKLTLHGGTKLNDASEYRSVVGS 1259
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYL FTRPDI+YAV ++ M P +H A KRVLRY+ GT T+G+ L + L +
Sbjct: 1260 LQYLAFTRPDIAYAVNRLSQLMPQPTEDHWQAAKRVLRYLAGTSTHGIFLDTTSPLNLHA 1319
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW G D ST+ Y ++LG N ISWSSK+Q ++RSS E+EYR VAN SE W+
Sbjct: 1320 FSDADWAGDSDDYVSTNAYVIYLGKNPISWSSKKQRGVARSSTESEYRAVANAASEVKWL 1379
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL +LH L + CDN+ A YL NPV H R KHI +D HFVR + G RV H
Sbjct: 1380 CSLLSKLHIRLPIRPSIFCDNIGATYLCANPVFHSRMKHIAIDYHFVRNMIQSGALRVSH 1439
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAS 335
V +R Q+AD TK L R F R + V + P S
Sbjct: 1440 VSTRDQLADALTKPLSRAHFQSARFKIGVRQLPPS 1474
>At4g27200 putative protein
Length = 819
Score = 287 bits (734), Expect = 7e-78
Identities = 150/330 (45%), Positives = 193/330 (58%), Gaps = 2/330 (0%)
Query: 5 FIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSY-FLGIAVTRH 63
F R+ +I + +++IL+ S L S +A L EF M D+G S FLGI V R
Sbjct: 394 FFCRKSDPSLFIYAHNNNLILLLLSQTLT-SLLAALNKEFRMTDMGQHSLTFLGIQVQRQ 452
Query: 64 AGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQY 123
GLF+SQ YA +++ A M C P TP+ + D T +RS+AG LQY
Sbjct: 453 QNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQY 512
Query: 124 LTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYTD 183
LT TRPDI +AV VC MH P LKR+LRY++GT+T G+ L +Y+D
Sbjct: 513 LTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSD 572
Query: 184 ADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNL 243
+DWG C TRRS G C F+G NL+SWSSK+ PT+SRSS EAEY+ +++ SE W+ L
Sbjct: 573 SDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTL 632
Query: 244 LLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVPS 303
L EL PL + CDN+SA+YL+ NP H RTKH ++D HFVRE+VA V H+P
Sbjct: 633 LRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPG 692
Query: 304 RHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
QIADIFTK LP F R L V PP
Sbjct: 693 SEQIADIFTKSLPYEAFIHLRGKLGVTLPP 722
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 276 bits (706), Expect = 1e-74
Identities = 133/315 (42%), Positives = 201/315 (63%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D+++F+ T I +L+YVDD+++ ++ + ++ LL SEF +KDLGP +FLG+ +
Sbjct: 704 DNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEI 763
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R + G+ + Q YA ++ G++ C PS+ P+D L+ GT +AT YR L G
Sbjct: 764 ARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGR 823
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L YL TRPDI++AV + + AP HM A +VLRY++G GL S L
Sbjct: 824 LLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNG 883
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADWG C D+RRS +G+C++LG +LI+W SK+Q +SRSS E+EYR +A E W+
Sbjct: 884 FSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWL 943
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+ LL +LH ++ + CDN SA++L+ NPV H+RTKHIE+D H VR+++ G+ + LH
Sbjct: 944 QQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLH 1003
Query: 301 VPSRHQIADIFTKGL 315
VP+ +Q+ADI TK L
Sbjct: 1004 VPTGNQLADILTKPL 1018
>At1g58140 hypothetical protein
Length = 1320
Score = 275 bits (703), Expect = 3e-74
Identities = 140/331 (42%), Positives = 203/331 (61%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
+H+L+I + DI LYVDD+I ++ ++ + F + EF M D+G +SY+LGI V
Sbjct: 981 EHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEV 1040
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ G+F++Q YA E++ + M NP TP++ KLS D T ++SL G+
Sbjct: 1041 KQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGS 1100
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L+YLT TRPDI YAV V +M P T H A KR+LRY++GT+ +GLH + KLV
Sbjct: 1101 LRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVG 1160
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DWGG D R+STSG+ ++GD +W SK+QP ++ S+ EAEY + V + W+
Sbjct: 1161 YSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWL 1220
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
RNLL EL P + T + DN SAI L+ NPV H R+KHI+ H++RE V++ ++ +
Sbjct: 1221 RNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEY 1280
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGE 331
V + Q+ADIFTK L R F RS L V +
Sbjct: 1281 VKTHDQVADIFTKPLKREDFIKMRSLLGVAK 1311
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 275 bits (702), Expect = 3e-74
Identities = 136/329 (41%), Positives = 200/329 (60%), Gaps = 1/329 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
DH+LF+ + +L+YVDDI++ ++S A L F ++DLG L YFLG+ V
Sbjct: 1119 DHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEV 1178
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R G+ + Q YA E++ GM +C P + P+ K+ G ED YR + G
Sbjct: 1179 ARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGK 1238
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L YLT TRPDI++AV ++C AP T H+ A RVL+Y++GT+ GL S L
Sbjct: 1239 LMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKG 1298
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
+ D+DW C D+RRST+ + +F+GD+LISW SK+Q T+SRSSAEAEYR +A E W+
Sbjct: 1299 FADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWL 1358
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL+ L +++ D+ +AIY++ NPV H+RTKHI++D H VRE++ G+ ++LH
Sbjct: 1359 FTLLVSLQ-ASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLH 1417
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
V + Q+ADI TK L F+ +S +S+
Sbjct: 1418 VRTEDQVADILTKPLFPYQFEHLKSKMSI 1446
>At1g48710 hypothetical protein
Length = 1352
Score = 274 bits (700), Expect = 6e-74
Identities = 140/331 (42%), Positives = 202/331 (60%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
+H+L+I + DI LYVDD+I ++ ++ + F + EF M D+G +SY+LGI V
Sbjct: 1013 EHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEV 1072
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ G+F++Q YA E++ + M NP TP++ KLS D T ++SL G+
Sbjct: 1073 KQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGS 1132
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L+YLT TRPDI YAV V +M P T H A KR+LRY++GT+ +GLH + KLV
Sbjct: 1133 LRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVG 1192
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DWGG D R+STSG+ ++GD +W SK+QP + S+ EAEY + V + W+
Sbjct: 1193 YSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWL 1252
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
RNLL EL P + T + DN SAI L+ NPV H R+KHI+ H++RE V++ ++ +
Sbjct: 1253 RNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEY 1312
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGE 331
V + Q+ADIFTK L R F RS L V +
Sbjct: 1313 VKTHDQVADIFTKPLKREDFIKMRSLLGVAK 1343
>At3g61330 copia-type polyprotein
Length = 1352
Score = 272 bits (696), Expect = 2e-73
Identities = 138/331 (41%), Positives = 202/331 (60%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
+H+L+I + DI LYVDD+I ++ ++ + F + EF M D+G +SY+LGI V
Sbjct: 1013 EHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEV 1072
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ G+F++Q YA E++ + + NP TP++ KLS D T ++SL G+
Sbjct: 1073 KQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGS 1132
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L+YLT TRPDI YAV V +M P T H A KR+LRY++GT+ +GLH + KLV
Sbjct: 1133 LRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVG 1192
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DWGG D R+STSG+ ++GD +W SK+QP ++ S+ EAEY + V + W+
Sbjct: 1193 YSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWL 1252
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
RNLL EL P + T + DN SAI L+ NPV H R+KHI+ H++RE V++ ++ +
Sbjct: 1253 RNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEY 1312
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGE 331
V + Q+AD FTK L R F RS L V +
Sbjct: 1313 VKTHDQVADFFTKPLKRENFIKMRSLLGVAK 1343
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 271 bits (692), Expect = 5e-73
Identities = 139/329 (42%), Positives = 202/329 (61%), Gaps = 1/329 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
DH+LF+ G + +L+YVDDI++ +++ A L + F ++DLG L YFLG+ +
Sbjct: 929 DHTLFLKDCGGEYVVVLVYVDDIVIASTNEAAAVQLSQDLQNLFKLRDLGDLKYFLGLEI 988
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
TR G+ L Q YA E++A GM +C + P+ KL G ED YR + G
Sbjct: 989 TRTEAGISLCQRKYALELLASTGMINCKLVSVPMVPNLKLMKVDGELLEDREQYRRIVGT 1048
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L YLT TRPDI++AV ++C +AP T H+ A RVL+Y++GT+ GL S L
Sbjct: 1049 LMYLTITRPDITFAVNKLCQFSYAPTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKG 1108
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
+ D+DW CPD+R ST+G+ +F+GD+LIS SK+Q +SRSSAEAEYR +A E W+
Sbjct: 1109 FADSDWASCPDSRHSTTGFTMFVGDSLISLRSKKQHVVSRSSAEAEYRALALATCELVWL 1168
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL L + ++ D+ +AIY++ NPV H+RTKHIE+D H VREK+ G+ ++LH
Sbjct: 1169 HTLLASL-TAATTIPILFSDSTAAIYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLH 1227
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
V + Q+ADI TK L F+ +S +S+
Sbjct: 1228 VRTEDQVADIMTKPLFPNQFEHLKSKMSI 1256
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 265 bits (676), Expect = 3e-71
Identities = 142/336 (42%), Positives = 198/336 (58%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D+SLF + G I ++L+YVDD+I+ ++ F + L F MKDLG L YFLG+ V
Sbjct: 1161 DYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEV 1220
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+R G LSQ YA +I+ G+ C PSA P+ KL+S +G + YR L G
Sbjct: 1221 SRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGR 1280
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
YLT TRPD+SYAV + M AP H A R++RY++G+ G+ L + +
Sbjct: 1281 FIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINA 1340
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y D+D+ CP TRRS S Y V+LGD+ ISW +K+Q T+S SSAEAEYR +A + E W+
Sbjct: 1341 YCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWL 1400
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+ LL +L S +HCD+ +AI+++ NPV H+RTKHIE D H VR+ V H
Sbjct: 1401 KALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEH 1460
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAST 336
+ + Q+AD+ TK LPR F+ S+L V + ST
Sbjct: 1461 IYTEDQVADLLTKSLPRPTFERLLSTLGVTDYVPST 1496
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,998,167
Number of Sequences: 26719
Number of extensions: 271564
Number of successful extensions: 817
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 138
length of query: 338
length of database: 11,318,596
effective HSP length: 100
effective length of query: 238
effective length of database: 8,646,696
effective search space: 2057913648
effective search space used: 2057913648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0343.1