BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0342b.10
(1246 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 690 0.0
At2g01840 putative non-LTR retroelement reverse transcriptase 667 0.0
At2g17910 putative non-LTR retroelement reverse transcriptase 664 0.0
At2g31520 putative non-LTR retroelement reverse transcriptase 655 0.0
At2g25550 putative non-LTR retroelement reverse transcriptase 653 0.0
At3g31420 hypothetical protein 635 0.0
At4g09710 RNA-directed DNA polymerase -like protein 609 e-174
At1g24640 hypothetical protein 606 e-173
At2g05200 putative non-LTR retroelement reverse transcriptase 601 e-172
At2g16680 putative non-LTR retroelement reverse transcriptase 596 e-170
At1g47910 reverse transcriptase, putative 595 e-170
At2g41580 putative non-LTR retroelement reverse transcriptase 558 e-159
At4g10830 putative protein 542 e-154
At3g32110 non-LTR reverse transcriptase, putative 538 e-153
At3g45550 putative protein 519 e-147
At2g31080 putative non-LTR retroelement reverse transcriptase 500 e-141
At2g11240 pseudogene 451 e-127
At4g15590 reverse transcriptase like protein 408 e-114
At2g17610 putative non-LTR retroelement reverse transcriptase 401 e-111
At1g25430 hypothetical protein 348 8e-96
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 690 bits (1780), Expect = 0.0
Identities = 405/1245 (32%), Positives = 656/1245 (52%), Gaps = 34/1245 (2%)
Query: 3 SEATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNP 62
S + PW L GDFN+++ EK G + S FR+ ++ GL +V G +F+W N
Sbjct: 126 SRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNR 185
Query: 63 RDGFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPS-RSKTPFKYEV 121
D V + +LDR +AN AW +LFP A A ++ SDHSP++ N + + R FKY+
Sbjct: 186 NDELV-QCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDK 244
Query: 122 FWDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQ 181
W + E K ++ W++ + + + +I S ++ + S KR + + VR+++
Sbjct: 245 RWVQREGFKDLLCNFWSQQSTKTNAL--MMEKIASCRREI-SKWKRVSKPSSA--VRIQE 299
Query: 182 EMHRMEERPNHL-VDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHAST 240
+++ + D + +K ++ + EE +W ++SR+ W + GD+N+K+FHA+T
Sbjct: 300 LQFKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAAT 359
Query: 241 IQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQ 300
RR +NRI ++ D G D+ ++++ +F +E V E L N V+ Q
Sbjct: 360 KNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPLVSDQ 419
Query: 301 LNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSEN 360
+NN L+ ++ E+ A + K PGPDG+NG ++ W + D + ++ FF S +
Sbjct: 420 MNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGS 479
Query: 361 LSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSA 420
+ +N+T + LIPK+ E + FRPIS CN I KVI ++M RLK+ L SLIS Q+A
Sbjct: 480 IEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAA 539
Query: 421 FVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFH 480
FV GRLI DNI++A E H L + S+ ++A+K D+SKAYDR+EW F+E+ + GF
Sbjct: 540 FVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFA 599
Query: 481 PTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQ 540
WI ++ V+ Y++ +NG +IP RGLRQGDPLSPYLFV+ T++L ML A+
Sbjct: 600 DHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAE 659
Query: 541 QEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKS 600
Q+ + GL+ +P ++HL FADDS+ + + + II+++ Y+ ASGQ++N KS
Sbjct: 660 QKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKS 719
Query: 601 GLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGW 660
+ FGK + + L + G YLGLP + +K +L ++++++ +K+ GW
Sbjct: 720 SIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGW 779
Query: 661 KETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWR 720
+ L+ GKE+L+KA+ A+P+Y M+ PKT C + +++A FWWK++ + RG+HW+
Sbjct: 780 QSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWK 839
Query: 721 SWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAA 780
+W ++ K GG+GF+++ N+A L +Q WR++T ++L +V KS YF + + A
Sbjct: 840 AWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAP 899
Query: 781 LGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEA----------LVKP 830
LG PS+ W+S+ + I + R V+G+G+++ VW D W+ + A LV
Sbjct: 900 LGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQ 959
Query: 831 INAADLK-VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGD 889
A + V DL+ P+G WN NL+ LF IL D W ++ G
Sbjct: 960 YAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGH 1019
Query: 890 YTVNSGFRVARNNTIITQTHSSSSHVIS---EDLWNTIWSSHVPQKVKVFLWKASHNSLA 946
Y+V SG+ V T I ++ V+ + ++ IW VP K+ FLW+ +N L+
Sbjct: 1020 YSVKSGYWVM---TEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLS 1076
Query: 947 VKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSW 1006
V NL + ++ C C ETV HL CP+ R W S L E
Sbjct: 1077 VASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRN 1136
Query: 1007 LLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQA-TRLLSTM 1065
+ +++ K ++ D +L+ +LW +W+ RN+ VFK EFT Q + M
Sbjct: 1137 MHHVLSVHKSQPEESDHH-ALIPWILWRLWKNRNDLVFKG----REFTAPQVILKATEDM 1191
Query: 1066 DLAKPVKEDRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYST 1125
D KE + + S R R W PP +K N D +W ++L +G ++R+
Sbjct: 1192 DAWNNRKEPQ-PQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGR 1250
Query: 1126 LL-SGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEA 1184
LL G A S L E A+R + V+ ESD++ LV + I
Sbjct: 1251 LLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDIPSL 1310
Query: 1185 STILQDIFCLKRLFHGCNFVWTNRERNKSAHLVAKACMQSLLSWN 1229
+ +QDI L R F F +T RE N A A+ + SL++++
Sbjct: 1311 APRIQDIRNLLRHFEEVKFQFTRREGNNVADRTARESL-SLMNYD 1354
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 667 bits (1722), Expect = 0.0
Identities = 411/1251 (32%), Positives = 641/1251 (50%), Gaps = 54/1251 (4%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
PW + GDFN+IL +EK+G R ++ LQ F ++C + D+ KGN ++W R
Sbjct: 492 PWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGK-RQNE 550
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRSKT-PFKYEVFWDE 125
LDRV N W+ FP P SDH+P++++ +K F+Y+ +
Sbjct: 551 TIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVCTKRGQFRYDRRHFQ 610
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
E V +GWNR D ++ +Q L ++RT ++I LK +
Sbjct: 611 FEDFVDSVQRGWNRG--RSDSHGGYYEKLHCCRQELAKWKRRTKTNTAEKIETLKYRVDA 668
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
E +H + + ++ ++ +R EELYW +SR +W GD+N+ FF+AST R++
Sbjct: 669 AER--DHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFYASTKLRKS 726
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHY-EDIFHTEGVSQIEECLHNFPKKVTQQLNNK 304
RNRI + D+ GI + + D +G +Y D+F T S EE + KVT+Q+N++
Sbjct: 727 RNRIKAITDAQGI-ENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKVTEQMNHE 785
Query: 305 LILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSE 364
L+ +V+D E+ +AV +G +APG DG F+ + W I + VC ++ FF S+ + ++
Sbjct: 786 LLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQ 845
Query: 365 INETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGG 424
IN+T + LIPK+ P+ + +RPIS C K+IS+I++ RLK+ L +IS +Q+AFV G
Sbjct: 846 INQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPG 905
Query: 425 RLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWI 484
+ I DN++VA E H L + Y+A+K D+SKAYDR+EW F+E+ ++ GF P W+
Sbjct: 906 QNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWV 965
Query: 485 DRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGK 544
++T V +Y + +NG + P RG+RQGDPLSPYLF+ +VLS ML +A+ +
Sbjct: 966 KWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQ 1025
Query: 545 FFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIF 604
G++ T + A++HL FADDSL F AS + + + Y ASGQKIN AKS +IF
Sbjct: 1026 IHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIF 1085
Query: 605 GKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETL 664
G+ P ++ + LL + G YLGLP GR K +I KVKE+ EGW
Sbjct: 1086 GQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNY 1145
Query: 665 LNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDK 724
L+ AGKE++IKAI A+P Y+M P CN +N+L+ FWW GK+
Sbjct: 1146 LSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWW---GKE---------- 1192
Query: 725 MTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRN 784
+G +GF+DL N A LA+QAWR+LTNP++L R+ K LY+PNT+++ A G +
Sbjct: 1193 -----NEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGH 1247
Query: 785 PSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSS--GEALVKPINAADLKVSDLI 842
S+ W S+ G+ + + R +GDG++ ++W D WL + PI D+KV+DL
Sbjct: 1248 ASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDEDMKVADLW 1307
Query: 843 SPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARNN 902
N W+ + +G+ PE +S + D W +T YTV SG+ VA
Sbjct: 1308 RENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVA--- 1364
Query: 903 TIITQTHSSSSHVISED--LWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSG 960
T + T + + D L IW + K+K F+W+ +L+ L + I
Sbjct: 1365 THVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADP 1424
Query: 961 QCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQD 1020
C CC++ ET+ H+ C + + VW ++ L F L + I ++ L
Sbjct: 1425 TCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRL----CFTDNLEENIRLI--LQGK 1478
Query: 1021 FDREFSLLASL-----LWSIWRGRNNSVFKAICPDP----EFTIQQATRLLSTMDLAKPV 1071
++ +L L +W +W+ RN +F+ + P + Q+AT + TM +
Sbjct: 1479 KNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAI 1538
Query: 1072 KEDRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLSGTH 1131
+ +S +R+ W P LK N D+ +V+ + G ++RD +L
Sbjct: 1539 SHN-TAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGC 1597
Query: 1132 AKIYCS-SPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQD 1190
AK+ S S L AEA L + + G V E DN L T+L D
Sbjct: 1598 AKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTEDHHLLETLLYD 1657
Query: 1191 I-FCLKRL-FHGCNFVWTNRERNKSAHLVAKACMQSLLSWNWLFMPPQELR 1239
I F + +L F +V NRERN +A + K + +PP+ L+
Sbjct: 1658 IRFWMTKLPFSSIGYV--NRERNLAADKLTKYANSMSSLYETFHVPPRWLQ 1706
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 664 bits (1712), Expect = 0.0
Identities = 401/1200 (33%), Positives = 613/1200 (50%), Gaps = 36/1200 (3%)
Query: 5 ATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRD 64
A WCLIGDFNDI EK G ++PS Q F + + ++ GN FTW N D
Sbjct: 106 AEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRND 165
Query: 65 GFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFW 123
+V + KLDR N AW +FPNA + SDH P+L+ + + + F+Y+
Sbjct: 166 QWV-QCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRL 224
Query: 124 DEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQ-NLWS*QKRTFRAADKEIVRLKQE 182
D+ C ++ + WN + + + I+ + ++W T A I RL+++
Sbjct: 225 DDDPYCIEVIHRSWNS-AMSQGTHSSFFSLIECRRAISVWKHSSDT--NAQSRIKRLRKD 281
Query: 183 MHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQ 242
+ E+ + W + IK ++ + EEL+W Q+SR KW GDKN+ FFHA+
Sbjct: 282 LDA--EKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHS 339
Query: 243 RRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLN 302
R +N + + D SD S +E++F + + L KVT ++N
Sbjct: 340 ERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMN 399
Query: 303 NKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLS 362
+ LI V++LE+ AV + APGPDG LFF+ HW +K + I FF + L
Sbjct: 400 HNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLP 459
Query: 363 SEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFV 422
+ N T + LIPK+ SP+ + RPIS C+ + K+IS+I+ RLK+ L +++S QSAFV
Sbjct: 460 QDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFV 519
Query: 423 GGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPT 482
RLI DNI+VA E H L + SK +MA K DMSKAYDR+EW F+E + A GF+
Sbjct: 520 PQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNK 579
Query: 483 WIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQE 542
WI ++ V +Y + +NG +IP RG+RQGDPLSP LFVL T+ L +L++A+Q
Sbjct: 580 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQA 639
Query: 543 GKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGL 602
GK G++F + ++ HL FADD+LL +A+ +E ++Q L+ Y + SGQ IN+ KS +
Sbjct: 640 GKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAI 699
Query: 603 IFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKE 662
FGK + K I + + + G YLGLP +K +I+EK++ +L GW
Sbjct: 700 TFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYA 759
Query: 663 TLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSW 722
L+Q GKEVL+K+I A+P Y M+ PK C L ++ +FWW S + R IHW SW
Sbjct: 760 KTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSW 819
Query: 723 DKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALG 782
++TL K++GG GF+DL+ N A LA+QAWRVL +L+ RV +S YF N+ F+ A G
Sbjct: 820 QRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRG 879
Query: 783 RNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINA-----ADLK 837
PS+ WRS+L GR+ + + R V+G+G+ VW D WL G +P+N DLK
Sbjct: 880 SRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNR-RPLNRRRFINVDLK 938
Query: 838 VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
VS LI P WN N+++ LF P ++I+ F + D W H+ G Y+V +G+
Sbjct: 939 VSQLIDPTSRNWNLNMLRDLF-PWKDVEIILKQRPLFFKEDSFCWLHSHNGLYSVKTGYE 997
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRIS 957
+ L++ IW+ H K+++FLWKA H ++ V+ L + I
Sbjct: 998 FLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIR 1057
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMG-PFDSWLLQRITILKR 1016
C +C ET+ H+ CP R VW I L G F + + ++ L
Sbjct: 1058 SDDGCLMCDTENETINHILFECPLARQVWA------ITHLSSAGSEFSNSVYTNMSRLID 1111
Query: 1017 LSQDFDREFSL---LASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKE 1073
L+Q D L +LW +W+ RN +F+ + +A A+ +
Sbjct: 1112 LTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQ 1171
Query: 1074 DRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKY-STLLSGTHA 1132
+ + + + W PP LK N+ +W + + ++RD LL +
Sbjct: 1172 N------DEKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRS 1225
Query: 1133 KIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEAC----KANALIGEASTIL 1188
SP +A+ + L + V+ S +++A + L+G+ S +L
Sbjct: 1226 FNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQALHKPHEWPLLLGDISELL 1285
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 655 bits (1689), Expect = 0.0
Identities = 399/1222 (32%), Positives = 628/1222 (50%), Gaps = 21/1222 (1%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
W L+GDFN+IL EK G + + FR V + D+ KG+RF+W R
Sbjct: 286 WLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHT 344
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILL--NPLSPSRSKTPFKYEVFWDE 125
+ LDRV N AW FP A SDH P+L+ N P RSK F+++ +
Sbjct: 345 VKCCLDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVHFNESFPRRSKL-FRFDNRLID 403
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
K IV W T + ++ RI S +Q + + + +++ I +L+ ++R
Sbjct: 404 IPTFKRIVQTSWR--TNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNR 461
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
E VD + ++ + + EE+YW Q+SR +W K GD+N+ +FHA T R +
Sbjct: 462 AMESTRR-VDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYS 520
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKL 305
+NR++ + D G G ++ + +IF T G+ +F VT +N L
Sbjct: 521 QNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDL 580
Query: 306 ILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEI 365
SD EI +A+ ++G KAPGPDGL F+KN W + V +K+FF + + I
Sbjct: 581 TKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSI 640
Query: 366 NETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGR 425
N T + +IPK+ +P ++ +RPI+ CN + KVIS+ +V RLK L+S++S +Q+AF+ GR
Sbjct: 641 NHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGR 700
Query: 426 LIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWID 485
+I DN+++A E H L + SK YMA+K D+SKAYDR+EW F+E T+ +GF WI
Sbjct: 701 IINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIG 760
Query: 486 RVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKF 545
++ V+ Y + +NG + P RG+RQGDPLSPYLF+L D+LS +++ G
Sbjct: 761 WIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDL 820
Query: 546 FGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFG 605
G+R +PA+THL FADDSL F +A+VR ++ V ++Y SGQKINV KS + FG
Sbjct: 821 RGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFG 880
Query: 606 KLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLL 665
+ + +L +P G YLGLP +GR K +I ++VK++ W L
Sbjct: 881 SRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFL 940
Query: 666 NQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKM 725
+ AGKE+++K++ A+P YAM+ PK + + +L+ NFWW+ RGI W +W ++
Sbjct: 941 SPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRL 1000
Query: 726 TLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNP 785
SK++GG+GFRDL N A LA+QAWR++ P +L+ RVMK+ YF + S + A + +
Sbjct: 1001 QYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQ 1060
Query: 786 SWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINA----ADLKVSDL 841
S+ W SLL G + + +R ++GDG+++++ DN + S +P+N ++ +++L
Sbjct: 1061 SYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPP--RPLNTEETYKEMTINNL 1118
Query: 842 ISPNGE--GWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVA 899
G W+D+ I I + ++K + D I W + G+YTV SG+ +
Sbjct: 1119 FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLL 1178
Query: 900 RNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPS 959
++ + H S DL IW+ + K+K FLW+A +LA L + +
Sbjct: 1179 THDPSTNIPAINPPHG-SIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID 1237
Query: 960 GQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQ 1019
CP C E++ H CP+ W+ S I F+ + + ++ +
Sbjct: 1238 PICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTM 1297
Query: 1020 DFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRIIES 1079
D L L+W IW+ RNN VF P T+ A T D + + S
Sbjct: 1298 S-DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAK--AETHDWLNATQSHKKTPS 1354
Query: 1080 IQSQ-RTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLS-GTHAKIYCS 1137
Q +W P +K N DA + +A G +IR+ Y T +S G+ + S
Sbjct: 1355 PTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTS 1414
Query: 1138 SPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIFCLKRL 1197
+PL AE A+ L + G T+V +E D ++L+ + + L+DI
Sbjct: 1415 NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWANK 1474
Query: 1198 FHGCNFVWTNRERNKSAHLVAK 1219
F F + R+ NK AH++AK
Sbjct: 1475 FASIQFGFIRRKGNKLAHVLAK 1496
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 653 bits (1684), Expect = 0.0
Identities = 402/1224 (32%), Positives = 630/1224 (50%), Gaps = 25/1224 (2%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
W L+GDFN+IL EK G + + FR V + D+ KG+RF+W R
Sbjct: 512 WLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHT 570
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILL--NPLSPSRSKTPFKYEVFWDE 125
+ LDRV N AW FP A SDH P+L+ N P RSK F+++ +
Sbjct: 571 VKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPRRSKL-FRFDNRLID 629
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
K IV W T + ++ RI S +Q + + + +++ I +L+ ++R
Sbjct: 630 IPTFKRIVQTSWR--TNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNR 687
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
E VD + ++ + + EE+YW Q+SR +W K GD+N+ +FHA T R +
Sbjct: 688 AMESTRR-VDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYS 746
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKL 305
+NR++ + D G G ++ + +IF T G+ +F VT +N L
Sbjct: 747 QNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDL 806
Query: 306 ILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEI 365
SD EI +A+ ++G KAPGPDGL F+KN W + V +K+FF + + I
Sbjct: 807 TKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSI 866
Query: 366 NETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGR 425
N T + +IPK+ +P ++ +RPI+ CN + KVIS+ +V RLK L+S++S +Q+AF+ GR
Sbjct: 867 NHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGR 926
Query: 426 LIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWID 485
+I DN+++A E H L + SK YMA+K D+SKAYDR+EW F+E T+ +GF WI
Sbjct: 927 IINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIG 986
Query: 486 RVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKF 545
++ V+ Y + +NG + P RG+RQGDPLSPYLF+L D+LS +++ G
Sbjct: 987 WIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDL 1046
Query: 546 FGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFG 605
G+R +PA+THL FADDSL F +A+VR ++ V ++Y SGQKINV KS + FG
Sbjct: 1047 RGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFG 1106
Query: 606 KLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLL 665
+ + +L +P G YLGLP +GR K +I ++VK++ W L
Sbjct: 1107 SRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFL 1166
Query: 666 NQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKM 725
+ AGKE+++K++ A+P YAM+ PK + + +L+ NFWW+ RGI W +W ++
Sbjct: 1167 SPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRL 1226
Query: 726 TLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNP 785
SK++GG+GFRDL N A LA+QAWR++ P +L+ RVMK+ YF + S + A + +
Sbjct: 1227 QYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQ 1286
Query: 786 SWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINA----ADLKVSDL 841
S+ W SLL G + + +R ++GDG+++++ DN + S +P+N ++ +++L
Sbjct: 1287 SYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPP--RPLNTEETYKEMTINNL 1344
Query: 842 ISPNGE--GWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVA 899
G W+D+ I I + ++K + D I W + G+YTV SG+ +
Sbjct: 1345 FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLL 1404
Query: 900 RNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRK--RIS 957
++ + H S DL IW+ + K+K FLW+A +LA L + RI
Sbjct: 1405 THDPSTNIPAINPPHG-SIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID 1463
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRL 1017
PS CP C E++ H CP+ W S I F+ + + ++
Sbjct: 1464 PS--CPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDT 1521
Query: 1018 SQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRII 1077
+ D L L+W IW+ RNN VF P T+ A T D + +
Sbjct: 1522 TMS-DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAK--AETHDWLNATQSHKKT 1578
Query: 1078 ESIQSQ-RTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLS-GTHAKIY 1135
S Q +W P +K N DA + +A G +IR+ Y T +S G+ +
Sbjct: 1579 PSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAH 1638
Query: 1136 CSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIFCLK 1195
S+PL AE A+ L + G T+V +E D ++L+ + + L+DI
Sbjct: 1639 TSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWA 1698
Query: 1196 RLFHGCNFVWTNRERNKSAHLVAK 1219
F F + ++ NK AH++AK
Sbjct: 1699 NKFASIQFGFIRKKGNKLAHVLAK 1722
>At3g31420 hypothetical protein
Length = 1491
Score = 635 bits (1639), Expect = 0.0
Identities = 386/1246 (30%), Positives = 618/1246 (48%), Gaps = 89/1246 (7%)
Query: 4 EATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPR 63
+ T W ++GDFN+IL EK G R + Q FR V D+ G+RF+W
Sbjct: 308 QGTAWFIMGDFNEILSNREKRGGRLRPERTFQDFRNMVRGCNFTDLKSVGDRFSWAGKRG 367
Query: 64 DGFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRSKTPF-KYEVF 122
D VT LDR +AN W LFP + + SDH P++ N + + F Y+
Sbjct: 368 DHHVTCS-LDRTMANNEWHTLFPESETVFMEYGESDHRPLVTNISAQKEERRGFFSYDSR 426
Query: 123 WDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQE 182
E K +V W+R + +L+ ++ +Q + +K A++ I ++ +
Sbjct: 427 LTHKEGFKQVVLNQWHRRNGSFEGDSSLNRKLVECRQAISRWKKNNRVNAEERIKIIRHK 486
Query: 183 MHRM--------EERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSK 234
+ R ER R ++ ++ + EE+YW +SR +W GD+N++
Sbjct: 487 LDRAIATGTATPRER----------RQMRQDLNQAYADEEIYWQTKSRSRWLNAGDRNTR 536
Query: 235 FFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIE--ECLHN 292
+FH++T RR RNR+ V+DS G G ++ I++++D++ + + + +
Sbjct: 537 YFHSTTKTRRCRNRLLSVQDSDGDICRGDENIAKVAINYFDDLYKSTPNTSLRYADVFQG 596
Query: 293 FPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAI 352
F +K+T ++N LI V++LEI E+V + + P PDG F++ W IK V +
Sbjct: 597 FQQKITDEINEDLIRPVTELEIEESVFSVAPSRTPDPDGFTADFYQQFWPDIKQKVIDEV 656
Query: 353 KEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDS 412
FF L N T + LIPKV++P ++ +FRPI+ CN K+IS+I+V RLK+ L
Sbjct: 657 TRFFERSELDERHNHTNLCLIPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGG 716
Query: 413 LISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIER 472
I+ NQ+AFV GRLI +N ++A E ++ L + + +YMALK D++KAYDRLEW F+E
Sbjct: 717 AITENQAAFVPGRLITNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEE 776
Query: 473 TLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVL 532
T+ GF+ WI+R++ V + + +NG ++ P RG+R GDPLSPYLF+L +VL
Sbjct: 777 TMRQMGFNTKWIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVL 836
Query: 533 SFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASG 592
S M+ QA+ K G+R + + P ++HL FADDS+ F A+ R T+I +
Sbjct: 837 SHMIKQAEINKKLKGIRLSTQGPFISHLLFADDSIFFTLANQRSCTAIKEP--------- 887
Query: 593 QKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEK 652
KR + +LL + G YLGLP + + K +I EK
Sbjct: 888 ------------------DTKRRMRHLLGIHNEGGEGKYLGLPEQFNKKKKELFNYIIEK 929
Query: 653 VKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQG 712
VK+K +GW + L+Q GKEVL+KA+ A+P Y+M I K C +++L+A FWW S
Sbjct: 930 VKDKTQGWSKKFLSQGGKEVLLKAVALAMPVYSMNIFKLTKEVCEEIDSLLARFWWSSGN 989
Query: 713 KDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFP 772
+ +G+HW +W +M++ K++GG+GF++L NLA L +Q W +L +P L RV++ YFP
Sbjct: 990 ETKGMHWFTWKRMSIPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFP 1049
Query: 773 NTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPIN 832
T+ M A GR S++W+S+L GR+ + + R VGDG + W D WL P++
Sbjct: 1050 ETNVMNAVQGRRASFVWKSILHGRNLLKKGLRCCVGDGSLINAWLDPWL--------PLH 1101
Query: 833 AADLKVSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTV 892
+ +P Q V + D+I W +T G YTV
Sbjct: 1102 SPRAPYKQEDAPE----------------------QLLVCSTARDDLIGWHYTKDGMYTV 1139
Query: 893 NSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLW 952
S + +A + T TH + + L +W + K+K F WK ++A L
Sbjct: 1140 KSAYWLATHLPGTTGTHPPPGDIKLKQL---LWKTKTAPKIKHFCWKILSGAIATGEMLR 1196
Query: 953 RKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRIT 1012
+ I+ C CC ET +HLF C + +A W G+ L ++ + + + T
Sbjct: 1197 YRHINKQSICKRCCRDEETSQHLFFECDYAKATWRGAGLPNLIFQDSIVTLEEKFRAMFT 1256
Query: 1013 ILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATR-LLSTMDLAKPV 1071
+ ++ R+ +LW +WR RN F+ E T+Q A + L D+ V
Sbjct: 1257 -FNPSTTNYWRQLPFW--ILWRLWRSRNILTFQQKHIPWEVTVQLAKQDALEWQDIEDRV 1313
Query: 1072 KEDRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLSGTH 1131
+ + S R A+ W P K N D S+ + + G +IRD++ + G
Sbjct: 1314 QVINPLSRRHSNRYAANRWTRPVCGWKKCNYDGSY-STIINSKAGWVIRDEHGQFIGGGQ 1372
Query: 1132 AK-IYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQD 1190
AK + ++ L + A+ + ++ G T+V E DN + + + ++D
Sbjct: 1373 AKGKHTNNALESALQALIIAMQSCWSHGHTKVCFEGDNIEVYQILNEGKARFDVYNWIRD 1432
Query: 1191 IFCLKRLFHGCNFVWTNRERNKSAHLVAKACMQSLLSWN-WLFMPP 1235
I KR F C F+W NR NK A +AK +Q + + F+PP
Sbjct: 1433 IQAWKRRFQECRFLWINRRNNKPADTLAKGHLQQHEHFKFYSFIPP 1478
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 609 bits (1570), Expect = e-174
Identities = 395/1234 (32%), Positives = 611/1234 (49%), Gaps = 48/1234 (3%)
Query: 5 ATPWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRD 64
++ W L GDFNDIL EK+G + FR FV +GL D+ GN +W+
Sbjct: 72 SSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYS 131
Query: 65 GFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSP--SRSKTPFKYEVF 122
F+ + +LDR L N +W +LFP + SDH P++ +P RSK PF+++
Sbjct: 132 HFI-KSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRSK-PFRFDRR 189
Query: 123 WDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQE 182
E E+ + +V + W + +I +Q++ K + K I + +Q
Sbjct: 190 LREKEEIRALVKEVWELARQDSVLY-----KISRCRQSIIKWTKEQNSNSAKAIKKAQQA 244
Query: 183 MHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQ 242
+ + D + + I +++ +RQEEL+W Q SRV+W GD+N +FHA+T
Sbjct: 245 LESALSAD--IPDPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRT 302
Query: 243 RRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLN 302
RR N + + D G + + S++++IF T S ++ ++ N
Sbjct: 303 RRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCN 362
Query: 303 NKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLS 362
+LI S LEI EA+ + KAPGPDG + FF +W I+ V I+ FF+ LS
Sbjct: 363 EELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLS 422
Query: 363 SEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFV 422
+NET V LIPK+ +P V +RPI+ CN K++++I+ RL+ L LIS +QSAFV
Sbjct: 423 PRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFV 482
Query: 423 GGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPT 482
GR I DN+++ E H L G MA+K DMSKAYDR++W F++ L+ GFH
Sbjct: 483 PGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDK 542
Query: 483 WIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQE 542
WI V+ V +Y +NG S++P RGLRQGDPLSPYLF+L T+VLS + +AQ++
Sbjct: 543 WIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEK 602
Query: 543 GKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGL 602
G G+R SP + HL FADD++ F + + ++ +L Y ASGQ IN+AKS +
Sbjct: 603 GVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAI 662
Query: 603 IFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKE 662
F P KR + L + G YLGLP +GR K I ++++++ W
Sbjct: 663 TFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSI 722
Query: 663 TLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSW 722
L+ AGK++L+KA++ ++PSYAM P + C + +++ FWW S+ R + W SW
Sbjct: 723 RFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSW 782
Query: 723 DKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALG 782
DK+TL +GG+GFR++ A+ +WR+L P +L RV+ Y +SFM +
Sbjct: 783 DKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSAS 835
Query: 783 RN-PSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWL--SSGEALVKPINAA--DLK 837
+ S WR +LAGRD + + W +G G S+ VW + WL SS + + P DL
Sbjct: 836 PSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLS 895
Query: 838 VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
V DLI + + WN I+ P+ +I + ++ D + W G+YT +G+
Sbjct: 896 VHDLICHDVKSWNVEAIR-KHLPQYEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYA 954
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRIS 957
+A+ N S + + + IW H KVK FLWKA +L V L R+ I
Sbjct: 955 LAKLN-------SFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIE 1007
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRL 1017
C C E+ HL L+CP+ + VW + + + + E + LL + L
Sbjct: 1008 AEVTCK-RCGQTESSLHLMLLCPYAKKVWELAPVLFNPS-EATHSSVALLLVDAKRMVAL 1065
Query: 1018 SQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRII 1077
L LLW +W+ RN +F D ++ L + +D ++ +I
Sbjct: 1066 PPTGLGSAPLYPWLLWHLWKARNRLIF-----DNHSCSEEGLVLKAILDARAWMEAQLLI 1120
Query: 1078 ESIQSQRTRASDWIPPEGNSLKIN---VDASWVENLPQAALGVLIRDKYST-LLSGTHAK 1133
+ SD+ P N LK+ VDA+W + +G ++D Y + +
Sbjct: 1121 H----HPSPISDYPSPTPN-LKVTSCFVDAAWTTS-GYCGMGWFLQDPYKVKIKENQSSS 1174
Query: 1134 IYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIFC 1193
+ S L AE A+ L A + G ++ + SD K L+ + I E +L DI
Sbjct: 1175 SFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLLNSGKSIVELRGLLHDIRE 1234
Query: 1194 LKRLFHGCNFVWTNRERNKSAHLVAKACMQSLLS 1227
L F F + R N A +AK+ + +LS
Sbjct: 1235 LSVSFTHLCFFFIPRLSNVVADSLAKSALSVILS 1268
>At1g24640 hypothetical protein
Length = 1270
Score = 606 bits (1562), Expect = e-173
Identities = 359/1055 (34%), Positives = 570/1055 (54%), Gaps = 56/1055 (5%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
WC+ GDFNDIL+ EK G ++ + F E + L+++ GN FTW D ++
Sbjct: 94 WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWI 153
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFWDEH 126
+ +LDR N W FP ++ SDH P+L+ +S S + F+++ +
Sbjct: 154 -QCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFK 212
Query: 127 EQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRM 186
E K + + W+R + I++++R+++ +++L S +K+ + +I +L+ +
Sbjct: 213 EDVKEAIIRTWSRGKHGTN--ISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL--- 267
Query: 187 EERPNHLVDWA---GVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQR 243
E+ LV W V V+K + +R+EE YW Q+SR KW + G++NSK+FHA+ Q
Sbjct: 268 -EKEQSLV-WPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQN 325
Query: 244 RNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNN 303
R R RI++++D G + ++ +++ ++F + S + +V++ +N
Sbjct: 326 RQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNE 385
Query: 304 KLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS 363
L+ VS EI EAV + APGPDG++ LFF+++W + + V +K+FF + +
Sbjct: 386 SLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPA 445
Query: 364 EINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVG 423
E N T + LIPK P +V RPIS C+ + K+IS+IM RL+ L ++S QSAFV
Sbjct: 446 EWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVS 505
Query: 424 GRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
RLI DNI+VA E H L + S +MA+K DMSKAYDR+EW+++ LL+ GFH W
Sbjct: 506 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 565
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
++ ++ V TY + +N +I RGLRQGDPLSP+LFVL T+ L+ +L++AQ EG
Sbjct: 566 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEG 625
Query: 544 KFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
G++F+ P + HL FADDSL +AS ++ + ++L +Y A+GQ IN+ KS +
Sbjct: 626 ALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSIT 685
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
FG+ + K I L + G YLGLP + +K L ++++++KEKL+ W
Sbjct: 686 FGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTR 745
Query: 664 LLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWD 723
L+Q GKEVL+K++ A+P +AM+ P T C +L + +A+FWW S R IHW+SW+
Sbjct: 746 CLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWE 805
Query: 724 KMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
++ L K+ GG+GFRD+++ N A LA+QAWR+L P+ L R++KS YF T F+ AAL +
Sbjct: 806 RLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQ 865
Query: 784 NPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALV----KPINAADLKVS 839
PS+ WRS+L GR+ +S+ + VGDG S+ VW D W+ I LKV
Sbjct: 866 RPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVK 925
Query: 840 DLISPNGEGWNDNLIKGLFQPE--LAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
L++P W++ ++ LF PE L IK ++ +S QAD W GD++V S +
Sbjct: 926 ALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVIS---QADFFVWKLNKSGDFSVKSAYW 982
Query: 898 VARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRIS 957
+A S + L +W+ K+K+FLWK
Sbjct: 983 LAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWK------------------ 1024
Query: 958 PSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRL 1017
VC + E+ H +CP +R +W S + G S I L
Sbjct: 1025 ------VCGELGESTNHTLFLCPLSRQIWALSDYPFPPDGFSNGSIYS------NINHLL 1072
Query: 1018 SQDFDREF-----SLLASLLWSIWRGRNNSVFKAI 1047
++E+ + +LW IW+ RN+ +F+ I
Sbjct: 1073 ENKDNKEWPINLRKIFPWILWRIWKNRNSFIFEGI 1107
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 601 bits (1549), Expect = e-172
Identities = 388/1227 (31%), Positives = 608/1227 (48%), Gaps = 75/1227 (6%)
Query: 15 NDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFVTREKLDR 74
N+IL EK G P+ FR F+ +GL D+ GN F+W+ D FV R++LDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRYDWFV-RQRLDR 94
Query: 75 VLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRSKT--PFKYEVFWDEHEQCKGI 132
++N +W + FP+ + SDH P+++ + +R K F+++ +++ +
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVF-VDEARVKRRGQFRFDNRLRDNDVVNAL 153
Query: 133 VTQGWNRP------TLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRM 186
+ + W T + C + N + N ++T +A ++ +
Sbjct: 154 IQETWTNAGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTA-------- 205
Query: 187 EERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNR 246
+ PN + + ++ ++ EE +W QRSRV W GD+N+ +FHA T RR +
Sbjct: 206 -DPPNPTT----IGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQ 260
Query: 247 NRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLI 306
NR+ + D G+ + + + +++ IF +E V+Q N+ L
Sbjct: 261 NRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLT 320
Query: 307 LAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEIN 366
+D E+ +AV + KAPGPDG F+ ++W I V I+ FF S+N +N
Sbjct: 321 RIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMN 380
Query: 367 ETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRL 426
ET + LIPK P V +RPI+ CN K++++IM R++ L LIS NQSAFV GR+
Sbjct: 381 ETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRV 440
Query: 427 IQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDR 486
I DN+++ E H L MA+K DMSKAYDR+EW F+++ L +GFH WID
Sbjct: 441 ISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDW 500
Query: 487 VLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFF 546
VL V +Y +NG ++P RGLRQGDPLSP LF+L T+VLS + ++AQ+ +
Sbjct: 501 VLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLP 560
Query: 547 GLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGK 606
G+R + P + HL FADD++ F+++ + ++L+ Y +ASGQ IN KS + F
Sbjct: 561 GVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSS 620
Query: 607 LAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLN 666
P K + +L + G YLGLP +GR K I +K+++K W L+
Sbjct: 621 KTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLS 680
Query: 667 QAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMT 726
QAGK+V++KA++ ++P Y+M+ P C + +L+ FWW ++ R W +W K+T
Sbjct: 681 QAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLT 740
Query: 727 LSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPS 786
K GG+GFRD+ N + LA+ WR+L +PE+L R++ Y ++SFM L PS
Sbjct: 741 NPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPS 800
Query: 787 WMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINAA-----DLKVSDL 841
WRS++AGR+ + W++ +G+ V +W D WLS + LV PI A DL+VS L
Sbjct: 801 HGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLV-PIGPALREHQDLRVSAL 859
Query: 842 ISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARN 901
I+ N W+ N I + P I Q P D + W G YT SG+ +A
Sbjct: 860 INQNTLQWDWNKI-AVILPNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASV 918
Query: 902 NTI-ITQTHSSSSHVISEDLWNT-IWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPS 959
+I I QT + W + +W K+K +WKA+ +L V L R+ ISPS
Sbjct: 919 ASIPIPQTQFN---------WQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPS 969
Query: 960 GQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSW-LLQRITILKRLS 1018
C C + E+ HLF C + VW + LQ G D+ LL++ IL
Sbjct: 970 AACHRC-GAPESTTHLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPPTG 1028
Query: 1019 QDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLL-STMDLAKPVKEDRII 1077
F + + G+ ++ +AI Q A R L T ++ P+ +
Sbjct: 1029 VTSAALFPWICGIY-----GKLGTMTRAIL--DALAWQSAQRCLPKTRNVVHPISQ---- 1077
Query: 1078 ESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIR-----DKYSTLLSGTHA 1132
+P + VDA+W+ A G + + +K + S
Sbjct: 1078 -------------LPVLRSGYFCFVDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCR 1124
Query: 1133 KIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIF 1192
++ S L+AEA AI+ L A LG T++++ SD+KS+V+A +N I E +L +I
Sbjct: 1125 RL--PSALSAEAWAIKSALLHALQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIR 1182
Query: 1193 CLKRLFHGCNFVWTNRERNKSAHLVAK 1219
L+ FH F + +R N A AK
Sbjct: 1183 ALRVSFHSLCFNFISRSANAIADATAK 1209
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 596 bits (1536), Expect = e-170
Identities = 368/1134 (32%), Positives = 569/1134 (49%), Gaps = 49/1134 (4%)
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
WC+IGDFNDIL K G + S Q F+ + + + GN FTW D ++
Sbjct: 94 WCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDMHQMGSSGNSFTWGGTRNDQWI 153
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPSRS-KTPFKYEVFWDEH 126
+ KLDR N W +F N+ ++ S H P+L+N ++ + F Y+ + E
Sbjct: 154 -QCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLVNFVNDQEVFRGQFCYDKRFAED 212
Query: 127 EQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRM 186
QC W + D L R+ ++ + +K + A I+RL+ E+
Sbjct: 213 PQCAASTLSSWIGNGISDVSSSML--RMVKCRKAISGWKKNSDFNAQNRILRLRSELD-- 268
Query: 187 EERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNR 246
EE+ W+ + VI+ ++ +R+EE +W +S+ KW GD+NSKFF A R +
Sbjct: 269 EEKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSKDKWLFGGDRNSKFFQAMVKANRTK 328
Query: 247 NRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLI 306
N + + D G + ++E++F + + + L F +V++++N +L
Sbjct: 329 NSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSALDGFKTRVSEEMNQELT 388
Query: 307 LAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEIN 366
AV++LEI AV + AP + + I FF + L E N
Sbjct: 389 QAVTELEIHSAVFSINVESAP-----------EKLECCQGSDYIEILGFFETGVLPQEWN 437
Query: 367 ETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRL 426
T + LIPK +P+ + RPIS C+ + K+IS+I+ +LK+ L S++SP+QSAF RL
Sbjct: 438 HTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQSAFFAERL 497
Query: 427 IQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDR 486
I DNI++A E H L + SK +M K DMSKAYDR+EW+F++ L+A GF+ WI
Sbjct: 498 ISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISW 557
Query: 487 VLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFF 546
++ V TY + +NG + P RG+RQGDP+SP+LFVL T+ L +L QA+ K
Sbjct: 558 IMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVS 617
Query: 547 GLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGK 606
G++F P++ HL F DD+ L A+ + ++ L+ Y SGQ INV KS + FG
Sbjct: 618 GIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGV 677
Query: 607 LAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLN 666
KR I N + + G YLGLP +K +I+EK++ L GW + L+
Sbjct: 678 KVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLS 737
Query: 667 QAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMT 726
Q GKE+L+K+I A+P Y MT PK C L +++ +FWW S IHW K+T
Sbjct: 738 QGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLT 797
Query: 727 LSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPS 786
L K GG GF+DL+ N A LA+QAWR+ ++ +++ ++ KS YF NT F+ A G PS
Sbjct: 798 LPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPS 857
Query: 787 WMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINAADL-----KVSDL 841
+ WRS+L GR+ ++ + ++G+G+ VW D WL G + +P+N L KVS L
Sbjct: 858 YTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSR-RPMNLHSLMNIHMKVSHL 916
Query: 842 ISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARN 901
I P WN + LF E ++++ + D W T G YTV SG+ +
Sbjct: 917 IDPLTRNWNLKKLTELFH-EKDVQLIMHQRPLISSEDSYCWAGTNNGLYTVKSGYERSSR 975
Query: 902 NTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQ 961
T + + L++ +WS K+KVF+WKA +LAV+ L + I +
Sbjct: 976 ETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADG 1035
Query: 962 CPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQDF 1021
C C + +ET+ HL CP+ R VW S +Q T F + + I + + SQ+F
Sbjct: 1036 CLFCKEEIETINHLLFQCPFARQVWALSLIQAPAT-----GFGTSIFSNINHVIQNSQNF 1090
Query: 1022 --DREFSLLAS-LLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKEDRIIE 1078
R ++ LLW IW+ RN ++F Q T L S+ +AK +E +
Sbjct: 1091 GIPRHMRTVSPWLLWEIWKNRNKTLF------------QGTGLTSSEIVAKAYEECNLWI 1138
Query: 1079 SIQSQRT-----RASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLL 1127
+ Q + + W PP LK N+ +W A + ++RD +L
Sbjct: 1139 NAQEKSSGGVSPSEHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVL 1192
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 595 bits (1534), Expect = e-170
Identities = 337/973 (34%), Positives = 503/973 (51%), Gaps = 41/973 (4%)
Query: 96 VTSDHSPILLNPLSP-SRSKTPFKYEVFWDEHEQCKGIVTQGWN-----RPTLHDDCWIN 149
+ SDHSP++ R K F+++ W + ++QGWN R + N
Sbjct: 2 LASDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLTN 61
Query: 150 LSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTL 209
I +++L ++T E+ +++ R E L L++
Sbjct: 62 CRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSREEITELT---------LRLKEA 112
Query: 210 WRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGA 269
+R EE YW Q+SR W K GD NSKFFHA T QRR RNRI + D GIW D+
Sbjct: 113 YRDEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNI 172
Query: 270 FISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGP 329
+S+++++F T +E L +T ++N+ L ++ E+ A+ + KAPGP
Sbjct: 173 AVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGP 232
Query: 330 DGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPIS 389
DG+ LFF+ W IK + + F +N T + LIPK + P + + RPIS
Sbjct: 233 DGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPIS 292
Query: 390 CCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSK 449
CN KVIS+I+ RLK L +LIS QSAFV GRLI DNI++AQE FH L
Sbjct: 293 LCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKD 352
Query: 450 NYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLI 509
+MA+K DMSKAYD++EW FIE L GF WI ++ + Y++ +NG +I
Sbjct: 353 KFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLII 412
Query: 510 PGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLF 569
P RGLRQGDPLSPYLF+L T+VL + +A+++ G++ SPA++HL FADDSL F
Sbjct: 413 PERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFF 472
Query: 570 AEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPG 629
+A+ + I+++L Y SGQ+IN +KS + FG K DI +L + G
Sbjct: 473 CKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMG 532
Query: 630 HYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIV 689
YLGLP G +K+ ++ ++++ ++ GW L++ GKEV+IK++ +P Y M+
Sbjct: 533 SYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCF 592
Query: 690 HFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLAR 749
PK + L + VA FWW S G RG+HW +WDK+ SK GG+GFR++ N A LA+
Sbjct: 593 RLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAK 652
Query: 750 QAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGD 809
Q WR++T P++L+ +V K YF ++ + + +PS+ WRS+++ R + + VG
Sbjct: 653 QLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGS 712
Query: 810 GKSVQVWGDNWLSS--------GEALVKPINAADLKVSDLISPNGEGWNDNLIKGLFQPE 861
G S+ VW D W+ + G ++V P LKV LI WN +L+K LF PE
Sbjct: 713 GASISVWNDPWIPAQFPRPAKYGGSIVDP----SLKVKSLIDSRSNFWNIDLLKELFDPE 768
Query: 862 LAIKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLW 921
I P+ N D + W T G+YTV SG+ AR + + + +I DL
Sbjct: 769 DVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDL------NEGTTLIGPDLT 822
Query: 922 NT---IWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLV 978
IW P K++ FLW+ + V NL ++ I C C S E++ H
Sbjct: 823 TLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQ 882
Query: 979 CPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRG 1038
C R +W +L I T G+ P +S + R+ D + ++W IW+
Sbjct: 883 CHPARQIW---ALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDS--APYPWIIWYIWKA 937
Query: 1039 RNNSVFKAICPDP 1051
RN VF+ + DP
Sbjct: 938 RNEKVFENVDKDP 950
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 558 bits (1439), Expect = e-159
Identities = 326/958 (34%), Positives = 510/958 (53%), Gaps = 24/958 (2%)
Query: 172 ADKEIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDK 231
A I +L++E+ + E+ W + +++ + +R+EE +W +SR KW GDK
Sbjct: 22 AKSRITKLRRELDK--EKSATFPSWTQISLLQDVLGDAYREEEDFWRLKSRDKWMVGGDK 79
Query: 232 NSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLH 291
NSKFF A+ R N + + D G + + ++ +ED+F + S ++ L
Sbjct: 80 NSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVTFFEDLFSSSYPSSMDSVLE 139
Query: 292 NFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPA 351
F K+VT+ +N L V++ EI +AV + APGPDG LFF+ W +K+ +
Sbjct: 140 GFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQRQWPLVKNQIISD 199
Query: 352 IKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLD 411
I+ FF + L + N T + LIPK+ P + RPIS C+ + K+IS+I+ RLK+ L
Sbjct: 200 IELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLP 259
Query: 412 SLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIE 471
++SP QSAFV RL+ DNI++A E H L + SK++M K DMSKAYDR+EW F++
Sbjct: 260 VIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLK 319
Query: 472 RTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDV 531
LLA GF+ TWI+ ++ V +Y + +NG + P RGLRQGDPLSP+LFVL T+
Sbjct: 320 GILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEA 379
Query: 532 LSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRAS 591
L +L+QA++ GK G++F P++ HL FADD+LL +AS E I+ L+ Y S
Sbjct: 380 LIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHIS 439
Query: 592 GQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEE 651
GQ IN KS + FG K+ I N + G YLGLP + +K +I+E
Sbjct: 440 GQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKE 499
Query: 652 KVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQ 711
K++ +L GW L+Q GK++L+K+I A P YAMT KT C L +++ +FWW S
Sbjct: 500 KLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSV 559
Query: 712 GKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYF 771
+ IHW K+ L K GG GF+DL+ N A LA+QA R+ T+ ++L +++KS Y+
Sbjct: 560 QDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYY 619
Query: 772 PNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSG-----EA 826
N+ F+ A G PS+ W+S+L GR+ + + ++G+G++ VW DNW+ E+
Sbjct: 620 MNSDFLSATKGTRPSYAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDKPRRPES 679
Query: 827 LVKPINAADLKVSDLISPNGEGWNDNLIKGLFQ-PELAIKILQTPVSKFNQADVIFWPHT 885
L ++ LKVS LI P WN N+++ LF E+ I Q P++ ++ D W T
Sbjct: 680 LQIMVD-IQLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMA--SRQDSFCWFGT 736
Query: 886 PRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSL 945
G YTV S + + + L+ IW+ + K+KVFLWK ++
Sbjct: 737 NHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAV 796
Query: 946 AVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDS 1005
AV+ L + + C +C + ET+ H+ CP R VW + +Q G G DS
Sbjct: 797 AVEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQ--SPNHGFG--DS 852
Query: 1006 WLLQRITILKRL-SQDFDREFSLLAS-LLWSIWRGRNNSVFKAICPDPEFTIQQATRLLS 1063
++ + + ++ ++W +W+ RN +F+ I + +A
Sbjct: 853 IFTNVNHVIGNCHNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALE--- 909
Query: 1064 TMDLAKPVKEDRIIESIQSQRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRD 1121
D + +K +I S + T+ WIPP N LK N+ +W + A + ++R+
Sbjct: 910 --DCKEWLKAHELICS--KEPTKDLTWIPPLMNELKCNIGIAWSKKHQMAGVSWVVRN 963
>At4g10830 putative protein
Length = 1294
Score = 542 bits (1396), Expect = e-154
Identities = 296/810 (36%), Positives = 461/810 (56%), Gaps = 9/810 (1%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
PW LIGDFN+IL +EK G + + FR V L D+ G+RF+W R
Sbjct: 491 PWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RHSH 549
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLN-PLSPSRSKTPFKYEVFWDE 125
+ LDR N LFP A SDH P+ L+ + +R PF+++ E
Sbjct: 550 TVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRLLE 609
Query: 126 HEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHR 185
K V GWN+ + +L +++++ +Q + + ++ + I +L+ + +
Sbjct: 610 VPHFKTYVKAGWNKAI--NGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDK 667
Query: 186 MEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRN 245
N + + I+ ++ +R EE YW Q+SR +W K GD+N++FFHA T R +
Sbjct: 668 AMSSVNR-TERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFS 726
Query: 246 RNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEG--VSQIEECLHNFPKKVTQQLNN 303
NR+ ++D G+ G ++ + ++ + G VS I+ F VT+Q+N+
Sbjct: 727 VNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIID--FAGFKPIVTEQIND 784
Query: 304 KLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS 363
L +SDLEI A+ +G KAPGPDGL F+K+ W + V +K FF + +
Sbjct: 785 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQ 844
Query: 364 EINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVG 423
IN T + +IPK+ +PE++ +RPI+ CN + K+IS+ +V RLK LD+++S +Q+AF+
Sbjct: 845 SINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIP 904
Query: 424 GRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
GRL+ DN+++A E H L + S++YMA+K D+SKAYDR+EW F+E T+ +GF TW
Sbjct: 905 GRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETW 964
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
I ++ V+ Y + VNG ++ P RG+RQGDPLSPYLF+L D+L+ ++ EG
Sbjct: 965 IKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG 1024
Query: 544 KFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
G+R P +THL FADDSL F +++VR ++ V ++Y SGQKIN++KS +
Sbjct: 1025 DIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMIT 1084
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
FG + + N+L + G YLGLP +GR K +I E+VK++ W
Sbjct: 1085 FGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAK 1144
Query: 664 LLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWD 723
L+ AGKE+++K++ ++P YAM+ P + + AL+ NFWW+ K R I W +W
Sbjct: 1145 YLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWK 1204
Query: 724 KMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
++ SK++GG+GFRDL N A LA+Q WR++ NP +L+ R+MK+ YF S + A R
Sbjct: 1205 RLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQR 1264
Query: 784 NPSWMWRSLLAGRDFISRYSRWVVGDGKSV 813
S+ W S+LAG D I + SR++VGDGK+V
Sbjct: 1265 YQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 538 bits (1387), Expect = e-153
Identities = 368/1220 (30%), Positives = 592/1220 (48%), Gaps = 77/1220 (6%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
P + GDFN I+ E+ G + S F E+++ L+D+ KGN+FTW+ + F
Sbjct: 696 PVVIGGDFNTIVRLDERSGGNGRLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERF 755
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPI---LLNPLSPSRSKTPFKYEVFW 123
++LDRVL R + AS L P + SDH+P+ L +S +R + PF++E W
Sbjct: 756 FVAKRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAW 815
Query: 124 DEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEM 183
H K ++ WN+ D + ++Q E++ L Q
Sbjct: 816 LSHPGFKELLLTSWNK-----DISTPEALKVQ-------------------ELLDLHQSD 851
Query: 184 HRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQR 243
+++ L D+ D + QEE+ W Q+SR KW +GD+N+KFFH STI R
Sbjct: 852 DLLKKEEELLKDF----------DVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTIIR 901
Query: 244 RNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLN- 302
R RN+I+ ++D+ G W ++ I +Y+ ++ + + + E L + +
Sbjct: 902 RRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFTALSEADF 961
Query: 303 NKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLS 362
+ L S LE+ A+ +G KAPGPDG +F++ W + ++V + +FF S +
Sbjct: 962 SSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSFP 1021
Query: 363 SEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFV 422
E N+ +V LI KV PE + QFRPIS CN + K I+++MV RLK ++ LI P Q++F+
Sbjct: 1022 QETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSFI 1081
Query: 423 GGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPT 482
GRL DNIVV QE H + + + K +M LK+D+ KAYDR+ W +E TL A G T
Sbjct: 1082 PGRLSTDNIVVVQEVVHSMRRK-KGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGT 1140
Query: 483 WIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQE 542
W+ ++ V G + RL NG + + P RGLRQGDPLSPYLFVL + L ++ +
Sbjct: 1141 WVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAA 1200
Query: 543 GKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGL 602
K+ ++ + P L+H+ FADD +LFAEAS+ + + VL + ASGQK+++ KS +
Sbjct: 1201 KKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKI 1260
Query: 603 IFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKE 662
F K + I+ M D G YLG+P + R + + ++ +L GWK
Sbjct: 1261 YFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKG 1320
Query: 663 TLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSW 722
+L+ AG+ L KA++ +I + M+ + P++ + L+ + F W S + + H +W
Sbjct: 1321 RMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAW 1380
Query: 723 DKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNT--SFMFAA 780
++ L + +GG+G R N A +A+ WRVL + +LW +V++S Y +
Sbjct: 1381 TRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTV 1440
Query: 781 LGRNPSWMWRSLLAG-RDFISRYSRWVVGDGKSVQVWGDNWLSS---GEALVKPINAAD- 835
N S WRS+ G RD I R WV+GDG+ ++ W D WLS + + P++ A
Sbjct: 1441 AKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQM 1500
Query: 836 LKVSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQA-DVIFWPHTPRGDYTVNS 894
L + + +G GW+ + I + +L V A D + W T G +TV S
Sbjct: 1501 LCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKS 1560
Query: 895 GFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRK 954
F + N+ Q SS L+ +W P++V+VFLW + ++ R+
Sbjct: 1561 AFAMLTNDDSPRQDMSS--------LYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRR 1612
Query: 955 RISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITIL 1014
+ S C VC +E++ H+ CP +W + + WL +
Sbjct: 1613 HLCDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLR-- 1670
Query: 1015 KRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDLAKPVKED 1074
+ L + ++ A +W W+ R +++F T + R + + + +
Sbjct: 1671 QGLMTEGSDWSTMFAMAVWWGWKWRCSNIF-----GENKTCRDRVRFIKDLAVEVSIAYS 1725
Query: 1075 RIIESIQS--QRTRASDWIPPEGNSLKINVDASWVENLPQAALGVLIRDKYSTLLSGTHA 1132
R +E S + + W PP KIN D + N A+ G ++R+ G
Sbjct: 1726 REVELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAV 1785
Query: 1133 KI-YCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDI 1191
I CS+PL AE + GL +A+ T + LE D++ +V K IGE +
Sbjct: 1786 NIGRCSAPL-AELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTG--IGET----HPL 1838
Query: 1192 FCLKRLFHGCNFV---WTNR 1208
L RL H NF+ WT R
Sbjct: 1839 SFLVRLCH--NFLSKDWTVR 1856
>At3g45550 putative protein
Length = 851
Score = 519 bits (1337), Expect = e-147
Identities = 292/841 (34%), Positives = 459/841 (53%), Gaps = 15/841 (1%)
Query: 274 YEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLN 333
+ DIF T G+ +FP VT +N++L D EI EA+ ++G KAPGPDGL
Sbjct: 14 FTDIFTTNGIQVSPIDFADFPSSVTNIINSELTQDFRDSEIFEAICQIGDDKAPGPDGLT 73
Query: 334 GLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNY 393
F+K W + + V +K FF S ++ + +N T + +IPK+ +P+++ +RPI+ CN
Sbjct: 74 ARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNV 133
Query: 394 ILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMA 453
+ KVIS+ MV RLK L+S++S +Q+AF+ GR+I DN+++A E H L + SK YMA
Sbjct: 134 LYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMA 193
Query: 454 LKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRG 513
+K D+SKAYDR+EW F+E T+ +GF WI ++ V+ Y + +NG + P RG
Sbjct: 194 VKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRG 253
Query: 514 LRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEAS 573
+RQGDPLSPYLF+L D+LS ++ G G+R +PA+THL FADDSL F +A+
Sbjct: 254 IRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQAN 313
Query: 574 VREATSIIQVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLG 633
VR ++ V ++Y SGQKINV KS + FG + + LL++P G YLG
Sbjct: 314 VRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLG 373
Query: 634 LPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPK 693
LP +GR K +I ++VKE+ W L+ AGKE+L+K++ A+P YAM+ P+
Sbjct: 374 LPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQ 433
Query: 694 TFCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWR 753
+ + +L+ NFWW+ RGI W +W ++ SK++GG+GFRDL N A LA+QAWR
Sbjct: 434 GIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWR 493
Query: 754 VLTNPEALWVRVMKSLYFPNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSV 813
++ P +L+ RVMK+ YF + S + A S+ W SLL+G + + +R+V+GDGK++
Sbjct: 494 IIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTI 553
Query: 814 QVWGDNWLSS--GEALVKPINAADLKVSDLISPNGEG--WNDNLIKGLFQPELAIKILQT 869
++ DN + S L+ L + +L G W++ ++ I +
Sbjct: 554 RLGIDNVVDSHPPRPLLTDEQHNGLSLDNLFQHRGHSRCWDNAKLQTFVDQSDHDYIKRI 613
Query: 870 PVSKFNQADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHV 929
+S ++ D + W + GDYTV SG+ ++ ++ T + H S DL IW+ +
Sbjct: 614 YLSTRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHG-SVDLKTKIWNLPI 672
Query: 930 PQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVW-FG 988
K+K FLW+ +L L + + CP C E++ H CP+ W
Sbjct: 673 MPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLS 732
Query: 989 SSLQWIVTLEGMGPFDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAIC 1048
+ + ++ D+ + I +L + + D + + LLW IW+ RNN VF +
Sbjct: 733 DTPLYRSSILSNNIEDN--ISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLR 790
Query: 1049 PDPEFTIQQATRLLSTMDLAKPVKEDRIIESIQSQRTRA---SDWIPPEGNSLKINVDAS 1105
P T+ +A + A + R + +RT A + W+ P+ +K N DAS
Sbjct: 791 ESPSITVVRAKAETNEWLNATQTQGPRRL----PKRTTAAGNTTWVKPQMPYIKCNFDAS 846
Query: 1106 W 1106
+
Sbjct: 847 F 847
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 500 bits (1288), Expect = e-141
Identities = 364/1194 (30%), Positives = 573/1194 (47%), Gaps = 108/1194 (9%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGF 66
P + GDFN IL+ E+ G + F ++++ L+D+ KGN+FTW+ ++
Sbjct: 32 PLLIGGDFNTILWVDERMGGNGRLSPDSLAFGDWINELSLIDLGFKGNKFTWRRGRQEST 91
Query: 67 VTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPIL--LNPLSPSRSKTPFKYEVFWD 124
V ++LDRV R + A P + SDH+P+ L PL R + EVF D
Sbjct: 92 VVAKRLDRVFVCAHARLKWQEAVVSHLPFMASDHAPLYVQLEPLQ-QRKLRKWNREVFGD 150
Query: 125 EHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMH 184
H + + +V + + D + LS+ + + KE V LK+
Sbjct: 151 IHVRKEKLVA---DIKEVQDLLGVVLSDDLLA-----------------KEEVLLKE--- 187
Query: 185 RMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRR 244
+D + QEE W Q+SR K+ + GD+N+ FFH STI RR
Sbjct: 188 ---------------------MDLVLEQEETLWFQKSREKYIELGDRNTTFFHTSTIIRR 226
Query: 245 NRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFP-KKVTQQLNN 303
RNRI+ ++ W + ++ +++Y+ ++ E VS++ L +++
Sbjct: 227 RRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLEDVSEVRNMLPTGGFASISEAEKA 286
Query: 304 KLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS 363
L+ A + E+ AV +G KAPGPDG +F++ W + +V + EFF + L +
Sbjct: 287 ALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPA 346
Query: 364 EINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVG 423
N+ ++ LI KV PE + QFRP+S CN + K+I+++MVTRLK + LI P Q++F+
Sbjct: 347 STNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIP 406
Query: 424 GRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTW 483
GRL DNIV+ QEA H + + + K +M LK+D+ KAYDR+ W F++ TL A G W
Sbjct: 407 GRLSIDNIVLVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGW 465
Query: 484 IDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEG 543
R++ V + + NG + S +P RGLRQGDPLSPYLFVL + L ++ + +
Sbjct: 466 TSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKR 525
Query: 544 KFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
++ + + L+H+ FADD +LFAEASV + I +VL + ASGQK+++ KS +
Sbjct: 526 EWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIF 585
Query: 604 FGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKET 663
F ++ I+ + + G YLG+P + R + + E+V +L GWK
Sbjct: 586 FSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGR 645
Query: 664 LLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWD 723
L+ AG+ L KA++ +IP + M+ + P + ++L+ F W S + + H SW
Sbjct: 646 SLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWR 705
Query: 724 KMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
K+ K +GG+G R R N A +A+ WR+L + E+LW RV++ Y + L
Sbjct: 706 KICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKP 765
Query: 784 NPSW--MWRSLLAG-RDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVK------PINAA 834
P W WRS+ G R+ + + WV GDG +++ W D WL E LV+ P
Sbjct: 766 QPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQ-EPLVELGTDMIPEGER 824
Query: 835 DLKVSDLISPNGEGWNDNLIKGLFQPE-LAIKILQTPVSKF-NQADVIFWPHTPRGDYTV 892
+D P G GWN ++ GL+ PE + ++L V F D I W T G +TV
Sbjct: 825 IKVAADYWLP-GSGWNLEIL-GLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTV 882
Query: 893 NSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLW 952
S + + + + S +N IW P++V+VF+W S N +
Sbjct: 883 RSAYSLLQGDVGDRPNMGS--------FFNRIWKLITPERVRVFIWLVSQNVIMTNVERV 934
Query: 953 RKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDS-----WL 1007
R+ +S + C VC + ET+ H+ CP +W + ++ L F S WL
Sbjct: 935 RRHLSENAICSVCNGAEETILHVLRDCPAMEPIW-----RRLLPLRRHHEFFSQSLLEWL 989
Query: 1008 LQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVF--KAICPDPEFTIQQATRLLSTM 1065
+ +K + +L +W W+ R VF + IC D RL
Sbjct: 990 FTNMDPVKGIWP------TLFGMGIWWAWKWRCCDVFGERKICRD---------RLKFIK 1034
Query: 1066 DLAKPVKEDRIIESIQSQR------TRASDWIPPEGNSLKINVDASWVENLPQAALGVLI 1119
D+A+ V+ R+ R R W P +KI D + N AA G I
Sbjct: 1035 DMAEEVR--RVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAI 1092
Query: 1120 RDKYSTLLSGTHAKI-YCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKSLV 1172
R+ L G I C++PL AE GL +A++ G V L+ D K +V
Sbjct: 1093 RNGQGEWLGGFALNIGSCAAPL-AELWGAYYGLLIAWDKGFRRVELDLDCKLVV 1145
>At2g11240 pseudogene
Length = 1044
Score = 451 bits (1161), Expect = e-127
Identities = 252/814 (30%), Positives = 426/814 (51%), Gaps = 29/814 (3%)
Query: 46 LMDVALKGNRFTWQSNPRDGFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILL 105
L D+ GN +W+ D V +LDR L+N AW + +P + + SDH P+L
Sbjct: 6 LYDLRHSGNFLSWRGKRHD-HVVHCRLDRALSNGAWAEDYPASRCIYLCFEGSDHRPLLT 64
Query: 106 N-PLSPSRSKTPFKYEVFWDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS* 164
+ LS + K F+Y+ +++ +V + WN L+D + +I + +
Sbjct: 65 HFDLSKKKKKGVFRYDRRLKNNDEVTALVQEAWN---LYDTDIVE--EKISRCRLEIVKW 119
Query: 165 QKRTFRAADKEIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVK 224
+ +++ K I +Q++ +H + + I + ++ EE YW QRSR
Sbjct: 120 SRAKQQSSQKLIEENRQKLEEAMSSQDHNQEL--LSTINTNLLLAYKAEEEYWKQRSRQL 177
Query: 225 WAKYGDKNSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHT-EGV 283
W GDKNS +FHA T R N+ + G+ + ++ ++ +++ +F EG
Sbjct: 178 WLALGDKNSGYFHAITRGRTVINKFSVIEKEDGVPEYEEAGILNVISEYFQKLFSANEGA 237
Query: 284 --SQIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHW 341
+ I+E + F ++ + N + EI A + KAPGPDG + FF+++W
Sbjct: 238 RAATIKEAIKPF---ISPEQNPE--------EIKSACFSIHADKAPGPDGFSASFFQSNW 286
Query: 342 GAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRI 401
+ + I+ FF S L IN+T + LIPK+ S + +V +RPI+ C K+IS++
Sbjct: 287 MTVGPNIVLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKL 346
Query: 402 MVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKA 461
+ RL+ L +IS NQSAFV R DN+++ EA H L G + +MA+K +MSKA
Sbjct: 347 LSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKA 406
Query: 462 YDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLS 521
YDR+EW FI+ + GFH TWI +L + +Y +NG ++ P RGLRQGDPLS
Sbjct: 407 YDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLS 466
Query: 522 PYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSII 581
P+LF++ ++VLS + +AQ +G GLR + +P + HL FADD++ F + ++ + +
Sbjct: 467 PFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFL 526
Query: 582 QVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRN 641
+L Y ASGQ IN +KS + F + P K + +L + + G YLGLP ++GR
Sbjct: 527 CILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRK 586
Query: 642 KSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNA 701
K I ++++++ W L+ AGK ++K+++ ++P+Y M+ + C + +
Sbjct: 587 KRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQS 646
Query: 702 LVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEAL 761
+ +FWW S + + W +W KM +K++GG+GF+D+ N A LA+ +WR++ +P +
Sbjct: 647 ALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCV 706
Query: 762 WVRVMKSLYFPNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWL 821
VR++ Y +SF+ ++ S WR + G+D I V+G G VW + WL
Sbjct: 707 LVRILLGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEPWL 766
Query: 822 SSGEALVKPINAA-----DLKVSDLISPNGEGWN 850
S + P+ A + V+ LI + W+
Sbjct: 767 SLSTSST-PMGPALEQFKSMTVAQLICQTTKSWD 799
Score = 63.2 bits (152), Expect = 9e-10
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 1031 LLWSIWRGRNNSVFKAICPDPEFTIQQATRLLSTMDL-AKPVKEDRIIESIQSQRTRASD 1089
+LW++W RN +F+ + +S+MDL ++ + + Q Q +++
Sbjct: 848 ILWNLWNCRNKLIFEQ-------------KHISSMDLISQSISQSTEWLGAQIQASKSKI 894
Query: 1090 WIPP------EGNSLKINVDASWVENLPQAALGVLIRDKYSTLLSGTH--AKIYCSSPLT 1141
IP + ++++ + DASW E QA G + D +S L H A + SPL
Sbjct: 895 VIPGISPSEIDLDTIQCSTDASWREETLQAGFGWVFVD-HSNHLESHHKAAAMNIRSPLL 953
Query: 1142 AEACAIREGLNLAYNLGCTEVVLESDNKSLVEACKANALIGEASTILQDIFCLKRLFHGC 1201
A+A A+ + A +LG ++V+ SD++ LV+ E I+ DI L F
Sbjct: 954 AKASALSLAIQHAADLGFKKLVVASDSQQLVKVLNGEPHPMELHGIVFDISVLSLNFEEN 1013
Query: 1202 NFVWTNRERNKSAHLVAKACM 1222
+F + RE N A +AKA +
Sbjct: 1014 SFSFVKRENNSKADALAKAAL 1034
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 408 bits (1049), Expect = e-114
Identities = 290/936 (30%), Positives = 437/936 (45%), Gaps = 93/936 (9%)
Query: 49 VALKGNRFTWQSNPRDGFVTREKLDRVL----ANWAWRDLFPNASALAYPQVTSDHSPIL 104
+ KGNRFTW+ + ++LDRVL A W++ AL P D
Sbjct: 1 MGFKGNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQE------ALLCPAQNVD----- 49
Query: 105 LNPLSPSRSKTPFKYEVFWDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS* 164
+ PF++E W HE K ++T W D ++ + + L
Sbjct: 50 -------ARRRPFRFEAAWLSHEGFKELLTASW-------DTGLSTPVALNRLRWQLKKW 95
Query: 165 QKRTFR----AADKEIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQR 220
K F +K + LK +E + ++K + D L QEE W Q+
Sbjct: 96 NKEVFGNIHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLK-EFDVLLHQEETLWFQK 154
Query: 221 SRVKWAKYGDKNSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHT 280
SR K GD+N+ FFH ST+ RR RNRI+ ++DS W + + + +Y ++
Sbjct: 155 SREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSL 214
Query: 281 EGVSQIEECL--HNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFK 338
E VS + L FP ++T++ N L + E+ AV +G KAPGPDG +F++
Sbjct: 215 EDVSVVRGTLPTEGFP-RLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQ 273
Query: 339 NHWGAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVI 398
W + ++V + EFF S L N+ ++ L+ KV PE + QFRP+S CN + K+I
Sbjct: 274 QCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKII 333
Query: 399 SRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDM 458
+++MV RLK + LI P Q++F+ GRL DNIVV QEA H ++ + K +M LK+D+
Sbjct: 334 TKMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVH-SMRRKKGRKGWMLLKLDL 392
Query: 459 SKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGD 518
KAYDR+ W F+ TL A G WI R++ V G L NG + S P RGLRQGD
Sbjct: 393 EKAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGD 452
Query: 519 PLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREAT 578
P+SPYLFVL + L + A G + + + P ++H+ FADD +LFAEASV
Sbjct: 453 PISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASV---- 508
Query: 579 SIIQVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLL----HMPIWDDPGHYLGL 634
QK+++ KS + F RD+ L+ + + G YLG+
Sbjct: 509 -------------AQKVSLEKSKIFFSN----NVSRDLEGLITAETGIGSTRELGKYLGM 551
Query: 635 PAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKT 694
P + R + + E+V +L GWK L+ AG+ L KA++ +IP + M+ + P +
Sbjct: 552 PVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPAS 611
Query: 695 FCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRV 754
L+ + NF W S + R H SW K+ K GG+G R + N A LA+ WR+
Sbjct: 612 LLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRL 671
Query: 755 LTNPEALWVRVMKSLYFPNTSFMFAALGRNPSW--MWRSLLAG-RDFISRYSRWVVGDGK 811
L + +LW RV++ Y + L +W WRS+ G R+ +++ W++ +
Sbjct: 672 LNDKVSLWARVLRRKYKVTDVHDSSWLVPKATWSSTWRSIGVGLREGVAK--GWILHEPL 729
Query: 812 SVQVWGDNWLSSGEALVKPINAADLKVSDLISPNGEGWNDNLIKGLFQPELAIKILQTPV 871
+ L S E L + +V + + G GW D + G P L V
Sbjct: 730 CTRA---TCLLSPEEL-------NARVEEFWT-EGVGW-DMVKLGQCLPRSVTDRLHAVV 777
Query: 872 SK--FNQADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHV 929
K D I W T GD+TV S + + T S E + IW
Sbjct: 778 IKGVLGLRDRISWQGTSDGDFTVGSAY--------VLLTQEEESKPCMESFFKRIWGVIA 829
Query: 930 PQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVC 965
P++V+VFLW + R+ I G VC
Sbjct: 830 PERVRVFLWLVGQQVIMTNVERVRRHI---GDIEVC 862
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 401 bits (1031), Expect = e-111
Identities = 216/630 (34%), Positives = 361/630 (57%), Gaps = 23/630 (3%)
Query: 426 LIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWID 485
+I DNI++A E H L + + ++A K+D++KA+D++EW FIE + GF W +
Sbjct: 1 MITDNILIAHELIHSL-HTKKLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCN 59
Query: 486 RVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKF 545
++T + TY + +NG +IP RG+RQGDP+SPYL++L T+ LS ++ + + +
Sbjct: 60 WIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQL 119
Query: 546 FGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIFG 605
G + + PA++HL FA DSL+F +A++ E +++ VL LY +ASGQ +N KS ++FG
Sbjct: 120 HGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFG 179
Query: 606 KLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLL 665
K FR ++ LL + + G YLGLP GRNK+++ +I + + +K++ W LL
Sbjct: 180 KGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLL 239
Query: 666 NQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKM 725
+ AGKEVLIK+I+ AIP+Y+M+ P + + + + FWW + I W +W K+
Sbjct: 240 SPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKL 299
Query: 726 TLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNP 785
K+ GG+ RDL+ N+A LA+Q+WR+L P +L RV K+ YFP + A
Sbjct: 300 NDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQS 359
Query: 786 SWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINAAD-----LKVSD 840
S+ W+S+L G ISR +++ G+G ++Q+W DNWL P+ D LKVSD
Sbjct: 360 SYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPR-PPVGTCDSIYSQLKVSD 418
Query: 841 LISPNGEG-WNDNLI-KGLFQPELA-IKILQTPVSKFNQADVIFWPHTPRGDYTVNSGFR 897
L+ EG WN++L+ K + Q ++ I+ ++ ++ N D I W +T G+Y+V SG+
Sbjct: 419 LLI---EGRWNEDLLCKLIHQNDIPHIRAIRPSITGAN--DAITWIYTHDGNYSVKSGYH 473
Query: 898 VARNNTIITQTHS---SSSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRK 954
+ R + Q H+ S + V ++ ++ IW + P K+K F W+++HN+L NL R+
Sbjct: 474 LLRK--LSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRR 531
Query: 955 RISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMGPFDSWLLQRITIL 1014
R+ C C ++ E V HL C ++ +W + ++ G + Q + +
Sbjct: 532 RLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIK---LCPGDSLMSNSFNQNLESI 588
Query: 1015 KRLSQDFDREFSLLASLLWSIWRGRNNSVF 1044
++L+Q ++ SL + W IW+ RN+ +F
Sbjct: 589 QKLNQSARKDVSLFPFIGWRIWKMRNDLIF 618
>At1g25430 hypothetical protein
Length = 1213
Score = 348 bits (894), Expect = 8e-96
Identities = 284/1068 (26%), Positives = 474/1068 (43%), Gaps = 56/1068 (5%)
Query: 7 PWCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHC---SGLMDVALKGNRFTWQSNPR 63
PW ++GDFN +L + +E P + +V R+F C + L D+ KGN FTW +
Sbjct: 138 PWLVLGDFNQVL--NPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGNTFTWWNKSH 195
Query: 64 DGFVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSP--ILLNPLSPSRSKTPFKYEV 121
V + K+DR+L N +W LFP++ + SDH ++L S ++K PFK+
Sbjct: 196 TTPVAK-KIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETS-IKAKRPFKFFN 253
Query: 122 FWDEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQ 181
+ ++ +V W + +S ++++ K+ + + + +K
Sbjct: 254 YLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKRTKEAHD 313
Query: 182 EMHRMEERPNHLVDWAGVRV-IKLKIDTLWR----QEELYWGQRSRVKWAKYGDKNSKFF 236
+ ++R L D + +L+ + W EE ++ Q+SR+ W GD N+K+F
Sbjct: 314 FLIGCQDRT--LADPTPINASFELEAERKWHILTAAEESFFRQKSRISWFAEGDGNTKYF 371
Query: 237 HASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQIEE-----CLH 291
H R + N I + D G + Q ++ S++ + E + E L
Sbjct: 372 HRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLMEQNDMNLLL 431
Query: 292 NFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPA 351
++ Q +L S+ +I A+ L K+ GPDG FF + W + V A
Sbjct: 432 SYRCSPAQVC--ELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDA 489
Query: 352 IKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLD 411
IKEFF S L + N T + LIPK+ +P FRPISC N + KVI+R++ RL+ L
Sbjct: 490 IKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLS 549
Query: 412 SLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIE 471
+IS QSAF+ GR + +N+++A + H S + LKVD+ KA+D + W F+
Sbjct: 550 GVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRG--MLKVDLKKAFDSVRWEFVI 607
Query: 472 RTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDV 531
L A +I+ + + T+ + +NG +GLRQGDPLSPYLFVLA +
Sbjct: 608 AALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEA 667
Query: 532 LSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYNRAS 591
S +L + G A + +++HL FADD ++F + I + L+ + S
Sbjct: 668 FSNLLHSRYESG-LIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWS 726
Query: 592 GQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEE 651
G K+N KS L L + + A PI P YLGLP + + + + E
Sbjct: 727 GLKVNKDKSHLYLAGLNQLESNANAA--YGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLE 784
Query: 652 KVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQ 711
K+ + W L+ AG+ LI ++I ++ M+ PK + +L + F W
Sbjct: 785 KITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGN 844
Query: 712 GKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYF 771
+ SW + L K +GG+G R L N R WR+ ++LW +
Sbjct: 845 IEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHL 904
Query: 772 PNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGE--ALVK 829
SF G++ SW W+ LL+ R ++ VG+G W DNW S G ++
Sbjct: 905 SRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLFRIIG 964
Query: 830 PINAADLKVSDLISP----NGEGWNDNLIKGLFQPELAIKILQTPVSKFNQADVIFWPHT 885
I + L+V L + +GW + + + + PV Q DV
Sbjct: 965 DIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDV------ 1018
Query: 886 PRGDYTVN----SGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKAS 941
R +++VN GF A+ I + S ++IW K +W +
Sbjct: 1019 DRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWA------SSIWFKGAVPKYAFNMWVSH 1072
Query: 942 HNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMG 1001
N L + L S C +C + E+ +HL L+C ++ VW L +
Sbjct: 1073 LNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQVW---RLVFRRICPRQR 1129
Query: 1002 PFDSWLLQRITILKRLSQDFDREFSLLAS--LLWSIWRGRNNSVFKAI 1047
F SW + ++ +++ S + + S +++++WR RNN + ++
Sbjct: 1130 LFSSW-SELLSWVRQSSPEAPPLLRKIVSQVVVYNLWRQRNNLLHNSL 1176
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,149,527
Number of Sequences: 26719
Number of extensions: 1271303
Number of successful extensions: 3261
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2644
Number of HSP's gapped (non-prelim): 259
length of query: 1246
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1135
effective length of database: 8,352,787
effective search space: 9480413245
effective search space used: 9480413245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0342b.10