BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.2
(88 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19500 resistence protein - like 27 2.3
At4g16950 disease resistance RPP5 like protein 27 2.3
At4g16900 disease resistance RPP5 like protein 27 2.3
At4g08150 KNAT1 homeobox-like protein 26 3.0
At2g44150 unknown protein 26 3.0
At2g02950 phytochrome kinase substrate 1 (PKS1) 26 4.0
At4g05250 putative protein (ubiquitin like) 25 5.2
At3g43220 putative protein 25 5.2
At5g33420 replication protein A1-like 25 6.8
At4g34230 cinnamyl alcohol dehydrogenase like protein 25 6.8
At1g07610 metallothionein-like protein 25 6.8
At5g40000 putative protein 25 8.8
At1g26540 unknown protein 25 8.8
At1g07600 metallothionein-like protein 25 8.8
>At4g19500 resistence protein - like
Length = 1239
Score = 26.6 bits (57), Expect = 2.3
Identities = 15/49 (30%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Query: 10 IGNDLEKNQVASSRN----VQVQDHIDAVSSILVNENHYSRFVALDGCS 54
+ +D+ K SS + V ++ H++A+SSIL ++ +R V + G S
Sbjct: 165 VADDVSKKLFKSSNDFSDIVGIEAHLEAMSSILRLKSEKARMVGISGPS 213
>At4g16950 disease resistance RPP5 like protein
Length = 1317
Score = 26.6 bits (57), Expect = 2.3
Identities = 14/48 (29%), Positives = 24/48 (49%)
Query: 7 TNSIGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALDGCS 54
+N + N L V ++ HI+A+ S+L E+ +R V + G S
Sbjct: 171 SNDVSNKLITRSKCFDDFVGIEAHIEAIKSVLCLESKEARMVGIWGQS 218
>At4g16900 disease resistance RPP5 like protein
Length = 1072
Score = 26.6 bits (57), Expect = 2.3
Identities = 15/49 (30%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Query: 10 IGNDLEKNQVASSRN----VQVQDHIDAVSSILVNENHYSRFVALDGCS 54
I ND+ ++ S + V ++ H++A++SIL E+ +R V + G S
Sbjct: 166 IANDVSNKLISPSNSFGDFVGIEAHLEAMNSILCLESKEARMVGIWGPS 214
>At4g08150 KNAT1 homeobox-like protein
Length = 398
Score = 26.2 bits (56), Expect = 3.0
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 1 SDRLNRTNSIGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALDGCSCSCSCS 60
S R+N + + + Q A++ N ++A+ + ++ HYS + C
Sbjct: 101 SSRINHYSMLMRAIHNTQEANNNNNDNVSDVEAMKAKIIAHPHYSTLL-----QAYLDCQ 155
Query: 61 CSAASQLLNDRWTAAIQSYNNSKDSS 86
A + DR TAA Q + + S
Sbjct: 156 KIGAPPDVVDRITAARQDFEARQQRS 181
>At2g44150 unknown protein
Length = 363
Score = 26.2 bits (56), Expect = 3.0
Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 10/75 (13%)
Query: 1 SDRLNRTNSIGNDLEK--NQVASSRNVQVQDHIDA---VSSILVNENHY-----SRFVAL 50
S +++ N +G +K NQ+ S ++ + ++ I + N Y R V
Sbjct: 4 SKKISDRNHLGQVFDKLLNQIGESEEFELPEWLNKGKPTPYIFIRRNIYLTKKVKRRVED 63
Query: 51 DGCSCSCSCSCSAAS 65
DG CSCS S +S
Sbjct: 64 DGIFCSCSSSSPGSS 78
>At2g02950 phytochrome kinase substrate 1 (PKS1)
Length = 439
Score = 25.8 bits (55), Expect = 4.0
Identities = 13/45 (28%), Positives = 24/45 (52%)
Query: 14 LEKNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALDGCSCSCS 58
L +N++ +S N ++ ++ I N+ F+A GC C+CS
Sbjct: 144 LLQNKLVNSCNSSFKEKKNSNGQIQKVTNNKKSFLANLGCKCACS 188
>At4g05250 putative protein (ubiquitin like)
Length = 318
Score = 25.4 bits (54), Expect = 5.2
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 23 RNVQVQDHIDAVSSILVNENHYSRFV 48
+ V +QDH+D +++N +H FV
Sbjct: 46 QGVVLQDHLDIKQCVILNHSHIQIFV 71
>At3g43220 putative protein
Length = 794
Score = 25.4 bits (54), Expect = 5.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 4 LNRTNSIGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSRF 47
+NR + ND+E Q+ S +DH +SS++ N F
Sbjct: 237 VNRNGDVANDVETEQIVSED--VPEDHPMQISSVVQNRGSIPLF 278
>At5g33420 replication protein A1-like
Length = 370
Score = 25.0 bits (53), Expect = 6.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 11 GNDLEKNQVASSRNV---QVQDHIDAVSSILVNE 41
GNDL +NQ +SS+ ++D ID S +V +
Sbjct: 332 GNDLHENQSSSSKKFCIPSIRDDIDKESGNIVED 365
>At4g34230 cinnamyl alcohol dehydrogenase like protein
Length = 357
Score = 25.0 bits (53), Expect = 6.8
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 16 KNQVASSRNVQVQDHIDAVSSILVNENHYSRFVALD----GCSCSCSCSCSAASQLLNDR 71
KN + S V H + V ++ + S+F D GC C CS + L
Sbjct: 55 KNDLGMSNYPMVPGH-EVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQY 113
Query: 72 WTAAIQSYNN 81
I SYN+
Sbjct: 114 CPKKIWSYND 123
>At1g07610 metallothionein-like protein
Length = 45
Score = 25.0 bits (53), Expect = 6.8
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 41 ENHYSRFVALDGCSCSCSCSCSAA 64
E +Y++ D CSC +CSC ++
Sbjct: 21 EKNYNK--ECDNCSCGSNCSCGSS 42
>At5g40000 putative protein
Length = 470
Score = 24.6 bits (52), Expect = 8.8
Identities = 12/43 (27%), Positives = 21/43 (47%)
Query: 4 LNRTNSIGNDLEKNQVASSRNVQVQDHIDAVSSILVNENHYSR 46
L T D+ +N +A ++ + V ++ + S L EN Y R
Sbjct: 414 LEETKISPADVAENLMARNQQIDVDKSLNLLISALEEENQYQR 456
>At1g26540 unknown protein
Length = 695
Score = 24.6 bits (52), Expect = 8.8
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 60 SCSAASQLLNDRWTAAIQSYNNSKDSSE 87
SCSAA + T ++S+ NSK+ SE
Sbjct: 307 SCSAAKSMTPTSATKHLRSFLNSKEISE 334
>At1g07600 metallothionein-like protein
Length = 45
Score = 24.6 bits (52), Expect = 8.8
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 41 ENHYSRFVALDGCSCSCSCSCSA 63
E +Y++ D CSC +CSC +
Sbjct: 21 EKNYNK--ECDNCSCGSNCSCGS 41
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.311 0.121 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,810,302
Number of Sequences: 26719
Number of extensions: 55253
Number of successful extensions: 138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 15
length of query: 88
length of database: 11,318,596
effective HSP length: 64
effective length of query: 24
effective length of database: 9,608,580
effective search space: 230605920
effective search space used: 230605920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0336.2