BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.8
(104 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76570 putative chlorophyll A-B binding protein 177 6e-46
At3g27690 putative chlorophyll A-B binding protein 102 2e-23
At2g05100 putative chlorophyll a/b binding protein 102 2e-23
At2g05070 putative chlorophyll a/b binding protein 102 2e-23
At1g29910 chlorophyll a/b-binding protein 101 5e-23
At1g29920 chlorophyll a/b-binding protein 101 5e-23
At1g29930 unknown protein 101 5e-23
At2g34430 putative photosystem II type I chlorophyll a/b binding... 100 9e-23
At2g34420 photosystem II type I chlorophyll a/b binding protein 100 9e-23
At5g54270 Lhcb3 chlorophyll a/b binding protein (gb|AAD28773.1) 98 8e-22
At1g61520 PSI type III chlorophyll a/b-binding protein 98 8e-22
At4g10340 chlorophyll a/b-binding protein - like 96 3e-21
At5g01530 chlorophyll a/b-binding protein CP29 88 8e-19
At3g54890 chlorophyll a/b-binding protein 87 1e-18
At1g45474 light-harvesting complex protein 85 5e-18
At3g08940 Lhcb4-protein (CP29, Lhcb4.2) 84 2e-17
At3g47470 light-harvesting chlorophyll a/b-binding protein (Cab4) 83 2e-17
At5g28450 PS I antenna protein Lhca2 fragment 75 7e-15
At3g61470 Lhca2 protein 74 9e-15
At1g19150 unknown protein 73 2e-14
>At1g76570 putative chlorophyll A-B binding protein
Length = 327
Score = 177 bits (450), Expect = 6e-46
Identities = 82/97 (84%), Positives = 87/97 (89%)
Query: 1 VGPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAM 60
VGPEYARYCG EALEPLGIYLPGDINYPGG LFDPLNLS+DP AF +LKVKEIKNGRLAM
Sbjct: 229 VGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAM 288
Query: 61 IAWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLLGSL 97
+AWLGFY QAA TGKGPVQNL+DH SDP HNNL+ L
Sbjct: 289 VAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAML 325
Score = 28.1 bits (61), Expect = 0.76
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQ 79
YL G++ PG FD L KD F + EI + R AM+A LG + G
Sbjct: 125 YLTGEL--PGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTF- 181
Query: 80 NLLDHFSDP 88
HF++P
Sbjct: 182 ----HFAEP 186
>At3g27690 putative chlorophyll A-B binding protein
Length = 266
Score = 102 bits (255), Expect = 2e-23
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 181 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 237
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 238 GPIENLFDHIADPVANN 254
Score = 40.0 bits (92), Expect = 2e-04
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 52 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 109 GALGCTFPEILSKNG 123
>At2g05100 putative chlorophyll a/b binding protein
Length = 265
Score = 102 bits (255), Expect = 2e-23
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 2e-04
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>At2g05070 putative chlorophyll a/b binding protein
Length = 265
Score = 102 bits (255), Expect = 2e-23
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 2e-04
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>At1g29910 chlorophyll a/b-binding protein
Length = 267
Score = 101 bits (252), Expect = 5e-23
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 7e-04
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>At1g29920 chlorophyll a/b-binding protein
Length = 267
Score = 101 bits (252), Expect = 5e-23
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 7e-04
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>At1g29930 unknown protein
Length = 267
Score = 101 bits (252), Expect = 5e-23
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 7e-04
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>At2g34430 putative photosystem II type I chlorophyll a/b binding
protein.
Length = 266
Score = 100 bits (250), Expect = 9e-23
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 187 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 246 HLADPVNNN 254
Score = 38.1 bits (87), Expect = 7e-04
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + EP YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 51 GSDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 108 GALGCVFPELLARNG 122
>At2g34420 photosystem II type I chlorophyll a/b binding protein
Length = 265
Score = 100 bits (250), Expect = 9e-23
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 186 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 244
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 245 HLADPVNNN 253
Score = 38.1 bits (87), Expect = 7e-04
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + EP YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 50 GSDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 106
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 107 GALGCVFPELLARNG 121
>At5g54270 Lhcb3 chlorophyll a/b binding protein (gb|AAD28773.1)
Length = 265
Score = 97.8 bits (242), Expect = 8e-22
Identities = 45/70 (64%), Positives = 54/70 (76%)
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G+ YPGG FDPL L+ DP FAELKVKEIKNGRLAM + GF++QA +TGKGP++NLL
Sbjct: 184 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 243
Query: 83 DHFSDPFHNN 92
DH +P NN
Sbjct: 244 DHLDNPVANN 253
Score = 41.6 bits (96), Expect = 7e-05
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G +++ YL G+ +PG +D LS DPEAFA+ + E+ +GR AM+
Sbjct: 49 GPDRVKYLGPFSVQTPS-YLTGE--FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 105
Query: 62 AWLG 65
G
Sbjct: 106 GAFG 109
>At1g61520 PSI type III chlorophyll a/b-binding protein
Length = 273
Score = 97.8 bits (242), Expect = 8e-22
Identities = 45/82 (54%), Positives = 60/82 (72%)
Query: 18 GIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGP 77
G+ G+ YPGG F+PL KD ++ ELK+KE+KNGRLAM+A LG+++Q +TG GP
Sbjct: 191 GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGP 250
Query: 78 VQNLLDHFSDPFHNNLLGSLNF 99
QNLLDH +DP +NN+L SL F
Sbjct: 251 YQNLLDHLADPVNNNVLTSLKF 272
Score = 30.8 bits (68), Expect = 0.12
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 8 YCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPE---AFAE---LKVKEIKNGRLAMI 61
+ S++L L LPGD FDPL LS DPE F E L EI NGR AM+
Sbjct: 57 FASSQSLSYLDGSLPGDYG------FDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAML 109
Query: 62 AWLG 65
G
Sbjct: 110 GAAG 113
>At4g10340 chlorophyll a/b-binding protein - like
Length = 280
Score = 95.9 bits (237), Expect = 3e-21
Identities = 48/68 (70%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
+PGG FDPL L+KDPE A LKVKEIKNGRLAM A LGF++QA +TG+GPV+NL H S
Sbjct: 201 HPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLS 259
Query: 87 DPFHNNLL 94
DPF NNLL
Sbjct: 260 DPFGNNLL 267
Score = 36.2 bits (82), Expect = 0.003
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
YL G++ G +DP L K PE FA+ + E+ + R AM+ GF + AL G
Sbjct: 84 YLNGEV--AGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYG 138
>At5g01530 chlorophyll a/b-binding protein CP29
Length = 290
Score = 87.8 bits (216), Expect = 8e-19
Identities = 39/72 (54%), Positives = 52/72 (72%)
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG FDPL L+ DPE A+L++ EIK+ RLAM+A+LGF +QAA TGKGP+ N H S
Sbjct: 217 YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 276
Query: 87 DPFHNNLLGSLN 98
DP H ++ + +
Sbjct: 277 DPLHTTIIDTFS 288
>At3g54890 chlorophyll a/b-binding protein
Length = 241
Score = 87.4 bits (215), Expect = 1e-18
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Query: 22 PGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGF-YMQAALTGKGPVQN 80
P YPGGA FDPL SKDP+ ELKVKEIKNGRLA++A++GF Q+A G GP++N
Sbjct: 162 PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 220
Query: 81 LLDHFSDPFHNNL 93
L H +DP+HNN+
Sbjct: 221 LATHLADPWHNNI 233
Score = 32.0 bits (71), Expect = 0.053
Identities = 22/58 (37%), Positives = 27/58 (45%), Gaps = 2/58 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAAL 72
EP YL G PG FDPL L + P K E+ + R AM+A G + AL
Sbjct: 52 EPRPAYLDGSA--PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
>At1g45474 light-harvesting complex protein
Length = 256
Score = 85.1 bits (209), Expect = 5e-18
Identities = 41/86 (47%), Positives = 59/86 (67%), Gaps = 9/86 (10%)
Query: 12 EALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAA 71
E LEP YPGG L +PL L+KD + + K+KEIKNGRLAM+A LGF++QA+
Sbjct: 175 EGLEP---------GYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225
Query: 72 LTGKGPVQNLLDHFSDPFHNNLLGSL 97
+T GP+ NL++H S+P+H ++ +L
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTL 251
Score = 31.6 bits (70), Expect = 0.069
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQ 79
YL G N G FDPL L +DPE+ E+ + R AM+ G L G ++
Sbjct: 58 YLDG--NLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTG-IR 114
Query: 80 NL 81
NL
Sbjct: 115 NL 116
>At3g08940 Lhcb4-protein (CP29, Lhcb4.2)
Length = 287
Score = 83.6 bits (205), Expect = 2e-17
Identities = 37/72 (51%), Positives = 50/72 (69%)
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG FDPL L+ DP A+L++ EIK+ RLAM+ +LGF +QAA TGKGP+ N H S
Sbjct: 214 YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLS 273
Query: 87 DPFHNNLLGSLN 98
DP H ++ + +
Sbjct: 274 DPLHTTIIDTFS 285
>At3g47470 light-harvesting chlorophyll a/b-binding protein (Cab4)
Length = 251
Score = 83.2 bits (204), Expect = 2e-17
Identities = 40/76 (52%), Positives = 55/76 (71%), Gaps = 5/76 (6%)
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G++ YPGG +F+PLN + EA K KE+ NGRLAM+A+LGF +Q +TGKGP +NLL
Sbjct: 181 GEVGYPGG-IFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLL 235
Query: 83 DHFSDPFHNNLLGSLN 98
H SDP+HN ++ + N
Sbjct: 236 QHLSDPWHNTIVQTFN 251
Score = 35.0 bits (79), Expect = 0.006
Identities = 21/57 (36%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
YL G + G FDPL L++DPE E+ NGR AM+ G + T G
Sbjct: 66 YLTGSLAGDNG--FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120
>At5g28450 PS I antenna protein Lhca2 fragment
Length = 101
Score = 74.7 bits (182), Expect = 7e-15
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 24 DINYPGGALFDPLNL-SKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
DI YPGG FDPL S P EL+ KEIKNGRLAM+A +G + Q TG GP+ NL
Sbjct: 24 DIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 83
Query: 83 DHFSDPFHNNLLGS 96
H +DP H + +
Sbjct: 84 AHLADPGHATIFAA 97
>At3g61470 Lhca2 protein
Length = 257
Score = 74.3 bits (181), Expect = 9e-15
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 24 DINYPGGALFDPLNL-SKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
D+ YPGG FDPL S P EL+ KEIKNGRLAM+A +G + Q TG GP+ NL
Sbjct: 180 DVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 239
Query: 83 DHFSDPFHNNLLGS 96
H +DP H + +
Sbjct: 240 AHLADPGHATIFAA 253
Score = 33.5 bits (75), Expect = 0.018
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 19 IYLPG-------DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAA 71
I+ PG D + PG FDPL LS DP++ EI + R AM+ G ++
Sbjct: 54 IWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEF 113
Query: 72 LTGKG 76
LT G
Sbjct: 114 LTKIG 118
>At1g19150 unknown protein
Length = 270
Score = 73.2 bits (178), Expect = 2e-14
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 24 DINYPGGALFDPLNLSK-DPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
D+ YPGG FD + + PE L+ KEIKNGRLAM+A+LGF QA T + P++NL+
Sbjct: 193 DVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLM 252
Query: 83 DHFSDPFHNNLLGS 96
H +DP H N+ +
Sbjct: 253 AHLADPGHCNVFSA 266
Score = 35.0 bits (79), Expect = 0.006
Identities = 24/71 (33%), Positives = 31/71 (42%), Gaps = 6/71 (8%)
Query: 10 GSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQ 69
GS E L LPGD FDPL L DP+ E+ + R AM+A G +
Sbjct: 71 GSSPPEWLDGSLPGDFG------FDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIP 124
Query: 70 AALTGKGPVQN 80
L G ++N
Sbjct: 125 ECLERLGFIEN 135
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.144 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,596,136
Number of Sequences: 26719
Number of extensions: 100727
Number of successful extensions: 217
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 56
length of query: 104
length of database: 11,318,596
effective HSP length: 80
effective length of query: 24
effective length of database: 9,181,076
effective search space: 220345824
effective search space used: 220345824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0335a.8