BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0334a.6
(203 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18380 unknown protein 178 2e-45
At3g11430 unknown protein 29 1.5
At1g33030 putative protein 28 2.5
At5g20420 putative protein 28 3.3
At3g42670 putative protein 28 3.3
At2g11620 pseudogene 28 3.3
At3g53840 protein kinase-like protein 27 7.4
At3g20140 cytochrome P450, putative 27 7.4
At5g53890 receptor protein kinase-like protein 27 9.7
At5g28920 putative protein 27 9.7
>At3g18380 unknown protein
Length = 349
Score = 178 bits (452), Expect = 2e-45
Identities = 81/135 (60%), Positives = 106/135 (78%), Gaps = 1/135 (0%)
Query: 70 DPSQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRER 129
D S LEFEA+S +DGAWYDV+AFLAHR + G+ EV+VRF GF EDEW+N+K VR+R
Sbjct: 139 DNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQR 198
Query: 130 SVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRYDHDN 189
S+P E+++C + GD VLCFQE +DQA+Y+DA +L+ QRR HD+RGCRC LVRY HD
Sbjct: 199 SLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQ 258
Query: 190 TEEK-VRLRRLCRRP 203
+E++ V LR++CRRP
Sbjct: 259 SEQEIVPLRKICRRP 273
>At3g11430 unknown protein
Length = 502
Score = 29.3 bits (64), Expect = 1.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 35 PTVKWTEARIQDLPEVPENNLESSQGKCKEGETIRDPSQLEFEA 78
PTV+ T R D ++ + + C EG T R+P L F A
Sbjct: 335 PTVRLTRIRDVDAAKIKQQLSKGDLVVCPEGTTCREPFLLRFSA 378
>At1g33030 putative protein
Length = 352
Score = 28.5 bits (62), Expect = 2.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 117 DEWVNIKDSVRERSVPFEST 136
D W N+KDSV E +PF +T
Sbjct: 124 DMWYNLKDSVLEGGLPFNNT 143
>At5g20420 putative protein
Length = 1261
Score = 28.1 bits (61), Expect = 3.3
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 19/136 (13%)
Query: 70 DPSQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRER 129
DP EF G W VE + + G +R+ G+ + + +R R
Sbjct: 14 DPCPFEFFC----SGTWKPVE----YMRIEDGMMTIRLLENGYVLED---IRPFQRLRLR 62
Query: 130 SVPFESTDCSYLNVGDPVLC----FQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRY 185
S +DC D +C E + ++ DARI+ I+R+ H+ C C I VR
Sbjct: 63 SRKAALSDCICFLRPDIDVCVLYRIHEDDLEPVWVDARIVSIERKPHESE-CSCKINVRI 121
Query: 186 DHDN---TEEKVRLRR 198
D EK R+ R
Sbjct: 122 YIDQGCIGSEKQRINR 137
>At3g42670 putative protein
Length = 1256
Score = 28.1 bits (61), Expect = 3.3
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 5/58 (8%)
Query: 126 VRERSVPFESTDC-SYLNVGDPVLCFQERRDQA---IYYDARILEIQRRMHDIRGCRC 179
+R RS DC S+L G V +R ++ ++ DAR+L I+R+ H+ C C
Sbjct: 59 LRIRSRKATLIDCTSFLRPGIDVCVLYQRDEETPEPVWVDARVLSIERKPHESE-CLC 115
>At2g11620 pseudogene
Length = 491
Score = 28.1 bits (61), Expect = 3.3
Identities = 11/38 (28%), Positives = 22/38 (56%)
Query: 43 RIQDLPEVPENNLESSQGKCKEGETIRDPSQLEFEARS 80
++ +P PE L+ G+C++ ++ D LE+EA +
Sbjct: 394 KLLGVPTQPEKPLQDLYGECQQNLSVEDLLPLEYEANN 431
Score = 27.7 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 51 PENNLESSQGKCKEGETIRDPSQLEFEARSTK 82
PE L+ G+C++ ++ D LE+EA + K
Sbjct: 363 PEKPLQDLYGECQQNLSVEDLLTLEYEANNNK 394
Score = 27.3 bits (59), Expect = 5.7
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 51 PENNLESSQGKCKEGETIRDPSQLEFEARS 80
PE L+ GKC++ ++ D LE+EA +
Sbjct: 324 PEKPLQDLYGKCQQNLSVEDLLPLEYEANN 353
>At3g53840 protein kinase-like protein
Length = 640
Score = 26.9 bits (58), Expect = 7.4
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 35 PTVKWTEARIQDLPEVPENNLESSQGKCKE 64
P KW E ++ L E P + SQG C++
Sbjct: 204 PVSKWGEPAVEILWEAPREPVCKSQGDCRD 233
>At3g20140 cytochrome P450, putative
Length = 510
Score = 26.9 bits (58), Expect = 7.4
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 84 GAWYDVEAFLAHRFVGTGEAEVR---VRFVGFGA 114
G+W D F RF+G+G+ + R ++++ FG+
Sbjct: 412 GSWEDPNEFKPERFLGSGKEDEREHGLKYIPFGS 445
>At5g53890 receptor protein kinase-like protein
Length = 1036
Score = 26.6 bits (57), Expect = 9.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 10 GRSFDREFYQKLTASFNRSSGRAGKPTVKWTEARIQDLPEVPENNLESSQGKCKEG 65
G + F A+ R SG G+ ++ +A ++ L NL S QG CK G
Sbjct: 766 GLVYKANFPDGSKAAVKRLSGDCGQMEREF-QAEVEALSRAEHKNLVSLQGYCKHG 820
>At5g28920 putative protein
Length = 510
Score = 26.6 bits (57), Expect = 9.7
Identities = 36/157 (22%), Positives = 60/157 (37%), Gaps = 23/157 (14%)
Query: 31 RAGKPTVKWTEARIQDLPEVPENNLESSQGKCKEGETIRDPSQLEFEARSTKDGAWYDVE 90
R G T K Q+L +P L S+ L F R G W D
Sbjct: 104 RFGSHTAKVLALNGQNLHMIPTKILSQSK-----------KIDLAFLGRKHYLGGWVDNP 152
Query: 91 AFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSVPFESTDCSY--LNVGDPVL 148
LA+RF + E E + +S+ S++ S PF ++ S+ P+
Sbjct: 153 LQLAYRFTASYENEQ----ISLLSSQH-----LPSIKSNSTPFPPSESSFYVATSNRPLS 203
Query: 149 CFQERRDQAIYYDARILE-IQRRMHDIRGCRCLILVR 184
+ ++ +++ D LE Q R+ C+ LI+ +
Sbjct: 204 KYYTKKRKSMQIDTNRLENNQARLDRKLACQGLIITK 240
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,702,904
Number of Sequences: 26719
Number of extensions: 194200
Number of successful extensions: 451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 13
length of query: 203
length of database: 11,318,596
effective HSP length: 94
effective length of query: 109
effective length of database: 8,807,010
effective search space: 959964090
effective search space used: 959964090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0334a.6