BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0334a.1
(1167 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20460 putative retroelement pol polyprotein 503 e-142
At2g16000 putative retroelement pol polyprotein 498 e-141
At2g13940 putative retroelement pol polyprotein 493 e-139
At2g23330 putative retroelement pol polyprotein 454 e-127
At2g07010 putative retroelement pol polyprotein 454 e-127
At4g14460 retrovirus-related like polyprotein 449 e-126
At1g70010 hypothetical protein 441 e-124
At4g17450 retrotransposon like protein 438 e-123
At1g26990 polyprotein, putative 432 e-121
At1g36620 hypothetical protein 414 e-115
At1g57640 413 e-115
At2g16670 putative retroelement pol polyprotein 311 2e-84
At2g07420 putative retroelement pol polyprotein 304 2e-82
At1g47650 hypothetical protein 298 1e-80
At4g22040 LTR retrotransposon like protein 293 3e-79
At2g15870 putative retroelement pol polyprotein 284 2e-76
At2g24660 putative retroelement pol polyprotein 262 7e-70
At4g16870 retrotransposon like protein 255 9e-68
At1g44510 polyprotein, putative 249 5e-66
At1g53810 243 4e-64
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 503 bits (1296), Expect = e-142
Identities = 308/877 (35%), Positives = 466/877 (53%), Gaps = 51/877 (5%)
Query: 61 SPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPGDANYE 120
SP+++HS ++P +++S L+ Y W+ +M+ L AKNK F++G +P + D N+
Sbjct: 64 SPFFLHSADHPGLSIISHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPNFR 123
Query: 121 AWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNL 180
W RCN+++ SW+LNSV+ I SI+ + +A D WRDL DRF+ L R L EI +L
Sbjct: 124 LWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNLTQEIQDL 183
Query: 181 KQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGL 240
+Q T+S+++YYT +KTLW++L+ + PC C E+ ++FL GL
Sbjct: 184 RQGTMSLSEYYTLLKTLWDQLDSTEALDD-----PCTCGKAVRLYQKAEKAKIMKFLAGL 238
Query: 241 NETFSVVNSQILMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYGKGKA 300
NE++++V QI+ LP +A+V + Q Q + +++E ++ +
Sbjct: 239 NESYAIVRRQIIAKKALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSE--VSHSPITS 296
Query: 301 PGSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYPT--TSKSKPAFNNVSHINNIT*G 358
P SG C+ C + GH + CY+ HG+P T K K +
Sbjct: 297 PEIMYVQSGPNKGRPTCSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQAVAAQV 356
Query: 359 YDSEDDQEESSKSQRGNGDLFTADQYKTIMAMIQ-----QVTA--TSASQKHTESGKAFA 411
S D ++ GN F+ DQ + ++A+ Q+ + T++SQ S ++ A
Sbjct: 357 TLSPDKMTGQLETLAGN---FSPDQIQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVA 413
Query: 412 N---LVTKSAVCGANTAGNGKHSTLSYSSQYDSRDWIIDSGASDHICFNKLCFDTLNRIK 468
L + S C H++LS S W+IDSGA+ H+ ++ F TL+
Sbjct: 414 PSGILFSPSTYCFIGILAVS-HNSLS------SDTWVIDSGATHHVSHDRKLFQTLDTSI 466
Query: 469 PVSVRLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEF 528
V LP G +++ G V I K I+L +VL++PEF NLIS+ L V+F
Sbjct: 467 VSFVNLPTGPNVRISGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPS 526
Query: 529 TCFVQEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVERISDSDQLIPPGALWHF 588
C +Q+ +G G + +LY L SP+ + A+ +V ++WH
Sbjct: 527 CCQIQDLTKGLTLGEGK-RIGNLYVLDTQSPAISVNAVVDV--------------SVWHK 571
Query: 589 RLGHLSHDRILALNALYPSI--DVSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMD 646
RLGH S R+ +L+ + + K C +CHLAK K+ FP + + F+LLH+D
Sbjct: 572 RLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHID 631
Query: 647 IWGPISVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVI 706
+WGP SV +V ++YFLT++DDHSR W+ LLK K +V F+ LV+ Q+ VK +
Sbjct: 632 VWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSV 691
Query: 707 RSDNGPEFMLHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMW 766
RSDN E +FY A GI+ SC TP+QN VERKHQHILN+ARAL+FQS++ W
Sbjct: 692 RSDNAKELAFTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYW 751
Query: 767 GYAILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDS 826
G +L AVFL++R S +L NK+P+E+L GK D +L+ FG LC++STSS R K
Sbjct: 752 GDCVLTAVFLINRTPSALLSNKTPFEVL-TGKLPDYSQLKTFGCLCYSSTSSKQRHKFLP 810
Query: 827 RARKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPYKSATSTAWTCLDLEVKDQ 886
R+R CVFLG+ G KG+ LLDL S+ + +SR+V FHE++ P S+ +A T D+
Sbjct: 811 RSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFPLASSQQSATTASDVFTPMD 870
Query: 887 SSSSLNIPETTSAAQELISDNENFSN---T*LPCHTQ 920
SS N T+ IS + S T P H Q
Sbjct: 871 PLSSGN-SITSHLPSPQISPSTQISKRRITKFPAHLQ 906
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 498 bits (1283), Expect = e-141
Identities = 299/873 (34%), Positives = 456/873 (51%), Gaps = 66/873 (7%)
Query: 12 GIRALTRVLPSQSSATMVRQASNNNNNGVQQAHGVQQPHVVLEPAQNPISPYYIHSGENP 71
G ++TR S + T + N +G +A + +P Q SP+++HS ++P
Sbjct: 17 GTSSVTRKSRSTGAVTTPPNSPPVNRSGASRALTSSESG---DPTQ---SPFFLHSADHP 70
Query: 72 SATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPGDANYEAWDRCNNLIHS 131
++S L+ NY W+ +M L AKNK FI+G + + D N+ W RCN+++ S
Sbjct: 71 GLNIISHRLDETNYGDWSVAMLISLDAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKS 130
Query: 132 WILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNLKQNTLSVNDYY 191
W+LNSV+ I SI+ + +A D WRDL RF+ L R L EI + +Q TLS+++YY
Sbjct: 131 WLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYY 190
Query: 192 TEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGLNETFSVVNSQI 251
T +KTLW++L+ + + PC C + EQ ++FL GLNE++++V QI
Sbjct: 191 TRLKTLWDQLDSTEALDE-----PCTCGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQI 245
Query: 252 LMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYGKGKAPGSSSSGSGYK 311
+ LP + +V + Q Q + +++E T P +G
Sbjct: 246 IAKKALPSLGEVYHILDQDNSQQSFSNVVAPPAAFQVSE--ITQSPSMDPTVCYVQNGPN 303
Query: 312 STGKYCTHCKKPGHTVDVCYRLHGYPT-----------TSKSKPAFNNVSHINNIT*GYD 360
C+ + GH + CY+ HG+P K KP NV+ + +
Sbjct: 304 KGRPICSFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSEVN---- 359
Query: 361 SEDDQEESSKSQRGNGDLFTADQYKTIMAMIQ-QVTATSASQKHTESGKAFANLVTKSAV 419
S +S GN + +Q + +AM Q+ T S T S NL +
Sbjct: 360 ------TSLESMVGN---LSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNL----GI 406
Query: 420 CGANTAGNGKHSTLSYSSQYDSRDWIIDSGASDHICFNKLCFDTLNRIKPVSVRLPNGIS 479
C + + + S W+IDSGA+ H+ ++ F +L+ +V LP G +
Sbjct: 407 CFSPSTYSFIGILTVARHTLSSATWVIDSGATHHVSHDRSLFSSLDTSVLSAVNLPTGPT 466
Query: 480 IQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFVQEKHTKK 539
++ G + + ILL +VL++PEF NLIS+ L V+F + +C +Q+ +
Sbjct: 467 VKISGVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGR 526
Query: 540 RIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVERISDSDQLIPPGALWHFRLGHLSHDRIL 599
+G G + +LY L V S + A+ ++ ++WH RLGH S R
Sbjct: 527 MLGQGR-RVANLYLLDVGDQSISVNAVVDI--------------SMWHRRLGHASLQR-- 569
Query: 600 ALNALYPSIDVSKHF-----VCDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPISVS 654
L+A+ S+ ++H C +CHLAK ++ FP S K FDLLH+D+WGP SV
Sbjct: 570 -LDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVE 628
Query: 655 SVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPEF 714
+V ++YFLT++DDHSR W+ LLK K EV F+ V+ Q+ VK +RSDN PE
Sbjct: 629 TVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPEL 688
Query: 715 MLHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWGYAILHAV 774
FY+ GI+ SC TP+QN VERKHQHILN+ARAL+FQS +P +WG +L AV
Sbjct: 689 KFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAV 748
Query: 775 FLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRARKCVFL 834
FL++R S++L NK+PYEIL G + ++LR FG LC++STS R K R+R C+FL
Sbjct: 749 FLINRTPSQLLMNKTPYEILTGTAPV-YEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFL 807
Query: 835 GFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILP 867
G+ G KG+ L+DL S+ +F+SR+V FHE++ P
Sbjct: 808 GYPSGYKGYKLMDLESNTVFISRNVQFHEEVFP 840
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 493 bits (1268), Expect = e-139
Identities = 286/827 (34%), Positives = 439/827 (52%), Gaps = 49/827 (5%)
Query: 60 ISPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPGDANY 119
+SPY + S +NP A + S+ LNG NYN WA M L AK K FING IP P D NY
Sbjct: 29 VSPYTLASSDNPGAVISSVELNGDNYNQWATEMLNALQAKRKTGFINGTIPRPPPNDPNY 88
Query: 120 EAWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGN 179
E W N++I WI S+ + ++ F+ +A W+DL+ RFS G VRI +++ ++ +
Sbjct: 89 ENWTAVNSMIVGWIRTSIEPKVKATVTFISDAHLLWKDLKQRFSVGNKVRIHQIRAQLSS 148
Query: 180 LKQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLG 239
+Q+ +V +YY + LWEE Y+P+ C C + CRC A RE++ +F+LG
Sbjct: 149 CRQDGQAVIEYYGRLSNLWEEYNIYKPVTVCTCGL-CRCGATSEPTKEREEEKIHQFVLG 207
Query: 240 LNET-FSVVNSQILMSNPLPPIAKVVSLAMQHERQSET----GENEESKSLVKMAEGKKT 294
L+E+ F + + ++ +PLP + ++ S ++ E++ + + EE+ + E
Sbjct: 208 LDESRFGGLCATLINMDPLPSLGEIYSRVIREEQRLASVHVREQKEEAVGFLARREQLDH 267
Query: 295 YGKGKAPGSSSSGSGYKSTGKY------CTHCKKPGHTVDVCYRLHGYPTTSKSKPAFNN 348
+ + A S S +G + C++C + GH C+++ G+P +
Sbjct: 268 HSRVDASSSRSEHTGGSRSNSIIKGRVTCSNCGRTGHEKKECWQIVGFPDWWSER----- 322
Query: 349 VSHINNIT*GYDSEDDQEESSKSQRGNGDLFTADQYKTIMAMIQQVTATSASQKHTESGK 408
N G + S RG G + A + ++ + T E +
Sbjct: 323 -----NGGRGSNGRGRGGRGSNGGRGQGQVMAAHATSSNSSVFPEFT--------EEHMR 369
Query: 409 AFANLVTKSAVCGANTAGNGKHSTLSYSSQYDSRDWIIDSGASDHICFNKLCFDTLNRIK 468
+ LV + + G+ + N S + D I+DSGAS H+ + +
Sbjct: 370 VLSQLVKEKSNSGSTSNNNSDR----LSGKTKLGDIILDSGASHHMTGTLSSLTNVVPVP 425
Query: 469 PVSVRLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEF 528
P V +G GV++++ + LT+VL+VP LISV KL K+ +C F +
Sbjct: 426 PCPVGFADGSKAFALSVGVLTLSNTVSLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDT 485
Query: 529 TCFVQEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVERISDSDQLIPPGALWHF 588
CF+Q++ +K IG G + +Y+L +P+ A NV DSDQ ALWH
Sbjct: 486 LCFLQDRSSKTLIGSGE-ERGGVYYLTDVTPAKIHTA--NV-----DSDQ-----ALWHQ 532
Query: 589 RLGHLSHDRILALNALYPSIDVSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIW 648
RLGH S + +L + CD+C AK R++FP+S++ + F L+H D+W
Sbjct: 533 RLGHPSFSVLSSLPLFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLIHCDVW 592
Query: 649 GPISVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRS 708
GP V + YFLT++DD+SR VW LL K EV+Q + NF+ + QF VK++RS
Sbjct: 593 GPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMVRS 652
Query: 709 DNGPEFM-LHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWG 767
DNG EFM L ++ +GI+HQ SCV TPQQNGRVERKH+HILN+ARALLFQ+ LP K WG
Sbjct: 653 DNGTEFMCLSSYFRENGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLPIKFWG 712
Query: 768 YAILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSR 827
+IL A +L++R S +L ++PYE+L G K + +LRVFGS C+ + + K R
Sbjct: 713 ESILTAAYLINRTPSSILSGRTPYEVLHGSKPV-YSQLRVFGSACYVHRVTRDKDKFGQR 771
Query: 828 ARKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPYKSATST 874
+R C+F+G+ G KG+ + D+ +E VSRDV F E++ PY S+
Sbjct: 772 SRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVIFREEVFPYAGVNSS 818
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 454 bits (1169), Expect = e-127
Identities = 298/822 (36%), Positives = 415/822 (50%), Gaps = 62/822 (7%)
Query: 63 YYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPGDANYEAW 122
Y I++ +NP A + S+ L NY W+ ++ L AK K FI+G IP D W
Sbjct: 22 YLINASDNPGALISSVVLKENNYAEWSEELQNFLRAKQKLGFIDGSIPKPA-ADPELSLW 80
Query: 123 DRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNLKQ 182
N++I WI S+ +I +++ FV A W +LR RFS G VR L++EI Q
Sbjct: 81 IAINSMIVGWIRTSIDPTIRSTVGFVSEASQLWENLRRRFSVGNGVRKTLLKDEIAACTQ 140
Query: 183 NTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGLNE 242
+ V YY + LWEEL+ Y+ +C+C EA + RE D +FLLGL+
Sbjct: 141 DGQPVLAYYGRLIKLWEELQNYKSGRECKC------EAASDIEKEREDDRVHKFLLGLDS 194
Query: 243 TFSVVNSQILMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYGKGKAPG 302
FS + S I PLP + +V S ++ E+ +K +VK T G +
Sbjct: 195 RFSSIRSSITDIEPLPDLYQVYSRVVREEQNLNASR---TKDVVK------TEAIGFSVQ 245
Query: 303 SSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYPTT-SKSKPAFNNVSHINNIT*GYDS 361
SS++ + +CTHC + GH V C+ +HGYP + P N S + G S
Sbjct: 246 SSTTPRFRDKSTLFCTHCNRKGHEVTQCFLVHGYPDWWLEQNPQENQPSTRGRGSNGRGS 305
Query: 362 EDDQ---EESSKSQRGNGDLFTADQYKTIMAMIQQVTATSASQKHTESGKAFANLVTKSA 418
+ S+ + RG G A Q A + S + +L+
Sbjct: 306 SSGRGGNRSSAPTTRGRGRANNA-----------QAAAPTVSGDGNDQIAQLISLLQ--- 351
Query: 419 VCGANTAGNGKHSTLSYSSQYDSRDWIIDSGASDHICFNKLCFDTLNRIKPVSVRLPNGI 478
A S+ S D +ID+GAS H+ + + I P V P+G
Sbjct: 352 ------AQRPSSSSERLSGNTCLTDGVIDTGASHHMTGDCSILVDVFDITPSPVTKPDGK 405
Query: 479 SIQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFVQEKHTK 538
+ Q G + + L VL+VP+F LISV KL K+ +F + CF+Q++ +
Sbjct: 406 ASQATKCGTLLLHDSYKLHDVLFVPDFDCTLISVSKLLKQTSSIAIFTDTFCFLQDRFLR 465
Query: 539 KRIGLGSLKEDDLYHLVVTSP----SSTCFAIPNVVERISDSDQLIPPGALWHFRLGHLS 594
IG G +E Y V +P +S+ FAI G LWH RLGH S
Sbjct: 466 TLIGAGEEREGVYYFTGVLAPRVHKASSDFAIS---------------GDLWHRRLGHPS 510
Query: 595 HDRILALNALYPSID-VSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPISV 653
+L+L S K CD C +K R++FP S + F L+H D+WGP
Sbjct: 511 TSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVFPISNNKTMECFSLIHGDVWGPYRT 570
Query: 654 SSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPE 713
S YFLT++DD+SR VW L+ K EV Q IKNF A+ + QF VK R+DNG E
Sbjct: 571 PSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGTE 630
Query: 714 FM-LHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWGYAILH 772
FM L ++ HGILHQ SCV+TPQQNGRVERKH+HILN+ARA LFQ +LP K WG +IL
Sbjct: 631 FMCLTPYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLPVKFWGESILT 690
Query: 773 AVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRARKCV 832
A L++R S VL+ K+PYE+LF G++ LR FG LC+A ++ K SR+RKCV
Sbjct: 691 ATHLINRTPSAVLKGKTPYELLF-GERPSYDMLRSFGCLCYAHIRPRNKDKFTSRSRKCV 749
Query: 833 FLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPYKSATST 874
F+G+ G K + + DL + +IF SRDV FHE I PY +AT +
Sbjct: 750 FIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQS 791
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 454 bits (1167), Expect = e-127
Identities = 279/832 (33%), Positives = 426/832 (50%), Gaps = 45/832 (5%)
Query: 41 QQAHGVQQPHVVLEPAQNPISPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKN 100
++ P +P +SPY + S +NP A + S+ L G NYN W+ M L AK
Sbjct: 5 EEVSSATHPRTNQQPDVTKVSPYTLASSDNPGAMISSVMLTGDNYNEWSTKMLNALQAKR 64
Query: 101 KFKFINGEIPIAVPGDANYEAWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRD 160
K FING I + +YE W N++I WI S+ + +++ F+ +A W +L+
Sbjct: 65 KTGFINGSISKPPLDNPDYENWQAVNSMIVGWIRASIEPKVKSTVTFICDAHQLWSELKQ 124
Query: 161 RFSQGVLVRIAELQNEIGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEA 220
RFS G V + +++ ++ +Q+ V DYY + LWEE + Y+PI C+C + C C A
Sbjct: 125 RFSVGNKVHVHQIKTQLAACRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKCGL-CTCGA 183
Query: 221 IEHAKMFREQDNAIRFLLGLNET-FSVVNSQILMSNPLPPIAKVVSLAMQHERQSETGEN 279
RE++ +F+LGL+++ F +++ ++ +P P + ++ S ++ E++ + +
Sbjct: 184 TLEPSKEREEEKIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASVQI 243
Query: 280 EESKSLVKMAEGKKTYGKGKAPGSSSSGSGYKSTGK--YCTHCKKPGHTVDVCYRLHGYP 337
E + + A G T + S KS + C+HC + GH C+++ G+P
Sbjct: 244 REQQ---QSAIGFLTRQSEVTADGRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFP 300
Query: 338 TTSKSKPAFNNVSHINNIT*GYDSEDDQEESSKSQRGNGDLFTADQYKTIMAMIQQVTAT 397
+ + G S S+ S RG G QVTA
Sbjct: 301 DWWTERTNGGGRGSSSRGRGGRSS-----GSNNSGRGRG----------------QVTAA 339
Query: 398 SASQKHTESGKAFANLVTKSAVCGANTAGNGKHSTLSYSSQYDSRDWIIDSGASDHICFN 457
A+ + F + NG L S + D I+D+GAS H+
Sbjct: 340 HATTSNLSPFPEFTPDQLRVITQMIQNKNNGTSDKL--SGKMKLGDVILDTGASHHMTGQ 397
Query: 458 KLCFDTLNRIKPVSVRLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAK 517
+ I SV +G G +++ + L++VLYVP +LISV KL K
Sbjct: 398 LSLLTNIVTIPSCSVGFADGRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVK 457
Query: 518 RNRCEVVFGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVERISDSD 577
+ +C +F + C +Q++ ++ IG G + D +Y+L T ++T V ++
Sbjct: 458 QIKCLALFTDTICVLQDRFSRTLIGTGE-ERDGVYYL--TDAATT------TVHKV---- 504
Query: 578 QLIPPGALWHFRLGHLSHDRILALNALYPSIDVSKHFVCDICHLAKLKRKMFPDSLHNAK 637
+ ALWH RLGH S + +L S CD+C AK R++FPDS + +
Sbjct: 505 DITTDHALWHQRLGHPSFSVLSSLPLFSGSSCSVSSRSCDVCFRAKQTREVFPDSSNKST 564
Query: 638 CNFDLLHMDIWGPISVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKT 697
F L+H D+WGP V S YFLT++DD SR VW LL K EV+ + NF+A +
Sbjct: 565 DCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEK 624
Query: 698 QFSHHVKVIRSDNGPEFM-LHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALL 756
QF VK+IRSDNG EFM L ++ GI+HQ SCV TPQQNGRVERKH+HILN++RALL
Sbjct: 625 QFGKSVKIIRSDNGTEFMCLSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHILNVSRALL 684
Query: 757 FQSHLPKKMWGYAILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFAST 816
FQ+ LP K WG A++ A +L++R S + SPYE+L G K D +LRVFGS C+A
Sbjct: 685 FQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELLHGCKP-DYDQLRVFGSACYAHR 743
Query: 817 SSSSRSKLDSRARKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPY 868
+ + K R+R C+F+G+ G KG+ + DL+++E VSRDV F E + PY
Sbjct: 744 VTRDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPY 795
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 449 bits (1156), Expect = e-126
Identities = 292/889 (32%), Positives = 432/889 (47%), Gaps = 123/889 (13%)
Query: 55 PAQNPISPYYIHSGENPSATVVSLPLN-GRNYNAWA*SMKRVLVAKNKFKFINGEIPIAV 113
P +PYY+HS ++ +VS L ++++W S+ L +NK FING I
Sbjct: 26 PVDQYENPYYLHSADHAGLILVSDRLTTASDFHSWRRSILMALNVRNKLGFINGTITKPP 85
Query: 114 PGDANYEAWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAEL 173
++ AW RCN+++ +W++NSV I S++++ W +L RF Q RI ++
Sbjct: 86 EDHRDFGAWSRCNDIVSTWLMNSVDKKIGQSLLYIATVQGIWNNLLSRFKQDDAPRIFDI 145
Query: 174 QNEIGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNA 233
+ ++ ++Q ++ ++ YYT + TLWEE Y +P C C C C+A + +++
Sbjct: 146 EQKLSKIEQGSMDISTYYTALLTLWEEHRNYVELPVCTCG-RCECDAAVKWEHLQQRSRV 204
Query: 234 IRFLLGLNETFSVVNSQILMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKK 293
+FL LNE F ILM P+P I + ++ Q ERQ S+ +
Sbjct: 205 TKFLKELNEGFDQTRRHILMLKPIPTIKEAFNMVTQDERQRNVKPLTRVDSVA--FQNTS 262
Query: 294 TYGKGKAPGSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYPTTSKS----------- 342
+ + ++ + + CTHC K GHT+ CY++HGYP K+
Sbjct: 263 MINEDENAYVAAYNTVRPNQKPICTHCGKVGHTIQKCYKVHGYPPGMKTGNTGYTYKPNP 322
Query: 343 --------------------KPAFNNVSHINNI------T*GYDSEDDQEESSKSQRGNG 376
+P N++ N + T Y SE + + G+
Sbjct: 323 QLHVQPRMPMMPQPRMQFPAQPYTNSMQKANVVAQVYAETGAYPSEGYSQAPMMNPYGSY 382
Query: 377 DL--------------FTADQYKTIMAMIQ---QVTATSASQKH-----TESGKAFANLV 414
+ FT Q + +++ Q QV +AS + T S F L
Sbjct: 383 PMPHITHGGNNLSLQDFTPQQIEQMISQFQAQVQVPEPAASSSNPSPLATVSEHGFMALT 442
Query: 415 TKSAVCGANTAGNGKHS---------TLSYSSQYDSRD-WIIDSGASDHICFNKLCFDTL 464
+ S + + K+ TLS ++ D WIIDSGAS H+C + F L
Sbjct: 443 STSGTIIPFPSTSLKYENNDLKFQNHTLSALQKFLPSDAWIIDSGASSHVCSDLAMFREL 502
Query: 465 NRIKPVSVRLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVV 524
+ +G V IT++++L +VL+VP+F +NL+SV L K C
Sbjct: 503 KSV-----------------SGTVHITQKLILHNVLHVPDFKFNLMSVSSLVKTISCSAH 545
Query: 525 FGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVV--TSPSSTCFAIPNVVERISDSDQLIPP 582
F C +QE IG G L + LY L TSPS++ A + ++
Sbjct: 546 FYVDCCLIQELSQGLMIGRGRLYHN-LYILETENTSPSTSTPAA------CLFTGSVLND 598
Query: 583 GALWHFRLGHLSHDRILALNALYPSIDVSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDL 642
G LWH RLGH PS V L KLKR + + A FDL
Sbjct: 599 GHLWHQRLGH-------------PSSVV----------LQKLKRLAYISHNNLASNPFDL 635
Query: 643 LHMDIWGPISVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHH 702
+H+DIWGP S+ S+ RYFLTV+DD +R WV +L+ K +V F+ LV TQF+
Sbjct: 636 VHLDIWGPFSIESIEGFRYFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAK 695
Query: 703 VKVIRSDNGPEFMLHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLP 762
+K IRSDN PE + HG+LH SC TPQQN VERKHQHILN+ARALLFQS++P
Sbjct: 696 IKAIRSDNAPELGFTEIVKEHGMLHHFSCAYTPQQNSVVERKHQHILNVARALLFQSNIP 755
Query: 763 KKMWGYAILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRS 822
+ W + AVFL++R+ S +L NKSPYE++ K+ D L+ FG LCF ST++ R+
Sbjct: 756 MQYWSDCVTTAVFLINRLPSPLLNNKSPYELIL-NKQPDYSLLKNFGCLCFVSTNAHERT 814
Query: 823 KLDSRARKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPYKSA 871
K RAR CVFLG+ G KG+ +LDL SH + VSR+V F E + P+K++
Sbjct: 815 KFTPRARACVFLGYPSGYKGYKVLDLESHSVTVSRNVVFKEHVFPFKTS 863
>At1g70010 hypothetical protein
Length = 1315
Score = 441 bits (1135), Expect = e-124
Identities = 265/780 (33%), Positives = 401/780 (50%), Gaps = 93/780 (11%)
Query: 92 MKRVLVAKNKFKFINGEIPIAVPGDANYEAWDRCNNLIHSWILNSVTSSIANSIVFVENA 151
M + AKNK F++G IP D + W RCN+++ SW+LNSV+ I SI++ A
Sbjct: 1 MTTSIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTA 60
Query: 152 CDAWRDLRDRFSQGVLVRIAELQNEIGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQCR 211
W+DL RF + L R+ +L+ +I +L+Q L ++ Y+T +TLWEEL + +P+
Sbjct: 61 AAIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPR-- 118
Query: 212 CVVPCRCEAIEHAKMFREQDNAIRFLLGLNETFSVVNSQILMSNPLPPIAKVVSLAMQHE 271
+E + RE + I FL+GLN+ + V SQILM LP +++V ++
Sbjct: 119 --------TVEDLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMI---- 166
Query: 272 RQSETGENEESKSLVKMAEGKKTYGKGKAPGSSSSGSGYKSTGKYCTHCKKPGHTVDVCY 331
Q ET + + M + + + + K C++C +PGH D CY
Sbjct: 167 DQDETQRSARISTTPGMTSSVFPVSNQSSQSALNGDTYQKKERPVCSYCSRPGHVEDTCY 226
Query: 332 RLHGYPTTSKSKPAFNNVSHINNIT*GYDSEDDQEESSKSQRGNGDLFTADQYKTIMAMI 391
+ HGYPT+ KSK F S N G +E + + GDL T+ I
Sbjct: 227 KKHGYPTSFKSKQKFVKPSISANAAIG-----SEEVVNNTSVSTGDLTTSQ--------I 273
Query: 392 QQVTATSASQKHTESGKAFANLVTKSAVCGANTAGNGKHSTLSYSSQYDSRDWIIDSGAS 451
QQ+ + +S+ S T + ++S SS D +S
Sbjct: 274 QQLVSFLSSKLQPPS-----------------TPVQPEVHSISVSS---------DPSSS 307
Query: 452 DHICFNKLCFDTLNRIKPVSVRLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNLIS 511
+C P+S G V + + ++L VL++P+F +NL+S
Sbjct: 308 STVC-------------PIS--------------GSVHLGRHLILNDVLFIPQFKFNLLS 340
Query: 512 VHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVE 571
V L K C + F E +C +Q+ + +G+G + +LY + + S S V
Sbjct: 341 VSSLTKSMGCRIWFDETSCVLQDATRELMVGMGK-QVANLYIVDLDSLSHPGTDSSITVA 399
Query: 572 RISDSDQLIPPGALWHFRLGHLSHDRILALNAL--YPSIDVSKHFVCDICHLAKLKRKMF 629
++ D LWH RLGH S ++ +++L +P + F C +CH++K K F
Sbjct: 400 SVTSHD-------LWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPF 452
Query: 630 PDSLHNAKCNFDLLHMDIWGPISVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IK 689
+ + FDL+H+D WGP SV + +RYFLT++DD+SR WV LL+ K +V I
Sbjct: 453 VSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIP 512
Query: 690 NFVALVKTQFSHHVKVIRSDNGPEFMLHDFYSAHGILHQRSCVNTPQQNGRVERKHQHIL 749
FV +V+ QF +K +RSDN PE FY + GI+ SC TPQQN VERKHQHIL
Sbjct: 513 TFVTMVENQFETTIKGVRSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHIL 572
Query: 750 NIARALLFQSHLPKKMWGYAILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQE-LRVF 808
N+AR+L FQSH+P WG IL AV+L++R+ + +LE+K P+E+L K + + ++VF
Sbjct: 573 NVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVL--TKTVPTYDHIKVF 630
Query: 809 GSLCFASTSSSSRSKLDSRARKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPY 868
G LC+ASTS R K RA+ C F+G+ G KG+ LLDL +H I VSR V FHE++ P+
Sbjct: 631 GCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPF 690
>At4g17450 retrotransposon like protein
Length = 1433
Score = 438 bits (1127), Expect = e-123
Identities = 284/856 (33%), Positives = 423/856 (49%), Gaps = 118/856 (13%)
Query: 53 LEPAQNPISPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIA 112
+E N SPY++HS ++P +VS L+G NYN W+ +M+ L AKNK F++G +P
Sbjct: 58 IESYDNAHSPYFLHSSDHPGLNIVSHILDGTNYNNWSIAMRMSLDAKNKLSFVDGSLPRP 117
Query: 113 VPGDANYEAWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAE 172
D ++ W RCN+++ +W+LN VT + W DL RF L R +
Sbjct: 118 DVSDRMFKIWSRCNSMVKTWLLNVVT--------------EMWNDLFSRFRVSNLPRKYQ 163
Query: 173 LQNEIGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDN 232
L+ I LKQ L ++ YYT+ KTLWE+L R + V C CE ++ E
Sbjct: 164 LEQSIHTLKQGNLDLSTYYTKKKTLWEQLANTRVLT----VRKCNCEHVKELLEEAETSR 219
Query: 233 AIRFLLGLNETFSVVNSQILMSNPLPPIAKVVSLAMQHERQSETGENEESK--------- 283
I+FL+GLN+ F+ + QIL P P + ++ ++ Q E Q G S
Sbjct: 220 IIQFLMGLNDNFAHIRGQILNMKPRPGLTEIYNMLDQDESQRLVGNPTLSNPTAAFQVQA 279
Query: 284 -----SLVKMAEGKKTYGKGKAPGSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYPT 338
S V MA+G +Y K K C++C K GH VD CY+ HGYP
Sbjct: 280 SPIIDSQVNMAQG--SYKKPK-----------------CSYCNKLGHLVDKCYKKHGYPP 320
Query: 339 TSKSKPAFNNVSHINNIT*GYDSEDDQEESSKSQRGNGDLFTADQYKTIMAMIQ-QVTAT 397
SK + I + E+ + + + F+ DQ +T+++ + ++
Sbjct: 321 GSK----WTKGQTIGSTNLASTQLQPVNETPNEKTDSYEEFSTDQIQTMISYLSTKLHIA 376
Query: 398 SASQKHTESGKAFA---NLVTKSAVCG------ANTAGNGKHSTLSYSSQYDSRDWIIDS 448
SAS T S + + ++ S + G +N + S++S R W+IDS
Sbjct: 377 SASPMPTTSSASISASPSVPMISQISGTFLSLFSNAYYDMLISSVSQEPAVSPRGWVIDS 436
Query: 449 GASDHICFNKLCFDTLNRIKPVSVRLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYN 508
GA+ H+ N+ + ++ VRLPN +++ G + ++ I L +VLY+PEF +N
Sbjct: 437 GATHHVTHNRDLYLNFRSLENTFVRLPNDCTVKIAGIGFIQLSDAISLHNVLYIPEFKFN 496
Query: 509 LISVHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCF--AI 566
LIS E + IG GS + +LY L + T
Sbjct: 497 LIS----------------------ELTKELMIGRGS-QVGNLYVLDFNENNHTVSLKGT 533
Query: 567 PNVVERISDSDQLIPPGALWHFRLGHLSHDRILALNALYPSIDVSKH--------FVCDI 618
++ S ++ WH RLGH ++ +I L+ + ++ V K VC +
Sbjct: 534 TSMCPEFSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVL-NLKVKKINKEHSPVCHVCHV 592
Query: 619 CHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPISVSSVHSHRYFLTVLDDHSRFVWVILL 678
CHL+K K F + FDL+H+D WGP SV + + W+ LL
Sbjct: 593 CHLSKQKHLSFQSRQNMCSAAFDLVHIDTWGPFSVPTNDA--------------TWIYLL 638
Query: 679 KRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPEFMLHDFYSAHGILHQRSCVNTPQQN 738
K K +V F+ +V TQ+ +K +RSDN E D ++AHGI+ SC TP+QN
Sbjct: 639 KNKSDVLHVFPAFINMVHTQYQTKLKSVRSDNAHELKFTDLFAAHGIVAYHSCPETPEQN 698
Query: 739 GRVERKHQHILNIARALLFQSHLPKKMWGYAILHAVFLMSRIQSKVLENKSPYEILFGGK 798
VERKHQHILN+ARALLFQS++P + WG +L AVFL++R+ + VL NKSPYE L K
Sbjct: 699 SVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKL---K 755
Query: 799 KID--LQELRVFGSLCFASTSSSSRSKLDSRARKCVFLGFKQGVKGFVLLDLNSHEIFVS 856
I + L+ FG LC++STS R K + RAR CVFLG+ G KG+ LLD+ +H + +S
Sbjct: 756 NIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSIS 815
Query: 857 RDVTFHEQILPYKSAT 872
R V FHE I P+ S+T
Sbjct: 816 RHVIFHEDIFPFISST 831
>At1g26990 polyprotein, putative
Length = 1436
Score = 432 bits (1111), Expect = e-121
Identities = 278/887 (31%), Positives = 446/887 (49%), Gaps = 92/887 (10%)
Query: 19 VLPSQSSATMVRQASNNNNNGVQQAHGVQQPHVVLEPAQNPISPYYIHSGENPSATVVSL 78
+L Q T+ +Q + ++ V +G + V + +NP+ +HS ++P ++V+
Sbjct: 23 ILEDQKLTTLKQQLAQRSD--VYGGNGFK----VSDSGENPL---LLHSSDHPGLSIVAH 73
Query: 79 PLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPGDANYEAWDRCNNLIHSWILNSVT 138
L+G NYN+W+ +M+ L AKNK F++G + D+ + W RCN+++++
Sbjct: 74 ILDGSNYNSWSIAMRISLDAKNKLGFVDGSLLRPSVDDSTFRIWSRCNSMVNN------- 126
Query: 139 SSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNLKQNTLSVNDYYTEIKTLW 198
L R +L+ + L+Q L ++ Y+T+ KTLW
Sbjct: 127 ----------------------------LPRRYQLEQAVMTLQQGKLDLSTYFTKKKTLW 158
Query: 199 EELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGLNETFSVVNSQILMSNPLP 258
E+L + R V C C+ ++ E I+FL+GL++ F+ + SQI P P
Sbjct: 159 EQLANTKS----RSVKKCDCDQVKELLEEAETSRVIQFLMGLSDDFNTIRSQIFNMKPRP 214
Query: 259 PIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYGKGKAPGSSSSGSGYKSTGKYCT 318
+ ++ ++ Q E Q G +S A +T G + G K CT
Sbjct: 215 GLNEIYNMLDQDESQRLVGFAAKSVPSPSPA-AFQTQGVLNDQNTILLAQGNFKKPK-CT 272
Query: 319 HCKKPGHTVDVCYRLHGYPTTSKSKPAFNNVSHINNIT*GYDSEDDQEESSKSQRGNGDL 378
HC + GHTVD CY++HGYP V N + D + Q + S G+ +
Sbjct: 273 HCNRIGHTVDKCYKVHGYPPGHPRAKENTYVGSTNLAS--TDQIETQAPPTMSATGH-ET 329
Query: 379 FTADQYKTIMAMI----QQVTATSASQKHTESGK----AFANLVTKSAVCGANTAGNGKH 430
+ D + +++ + Q + TS K S + + + K+ +N +
Sbjct: 330 MSNDHIQQLISYLSTKLQSPSITSCFDKAIASSSNPVPSISQITDKAIASSSNPVPSISQ 389
Query: 431 STLSYSSQYDS------------------RDWIIDSGASDHICFNKLCFDTLNRIKPVSV 472
T ++ S YDS R W+IDSGAS H+ + + T + V
Sbjct: 390 ITGTFFSLYDSTYYEMLTSSIPIETELSLRAWVIDSGASHHVTHERNLYHTYKALDRTFV 449
Query: 473 RLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFV 532
RLPNG +++ G + +T + L +VL++PEF +NL+SV L K + +V F C +
Sbjct: 450 RLPNGHTVKIEGTGFIQLTDALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMI 509
Query: 533 QEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIP--NVVERISDSDQLIPPGALWHFRL 590
Q + +G GS + +LY L + + P +V + + ++ WH RL
Sbjct: 510 QALTKELMLGKGS-QVGNLYILNLDKSLVDVSSFPGKSVCSSVKNESEM------WHKRL 562
Query: 591 GHLSHDRILALN--ALYPSIDVSKHFV-CDICHLAKLKRKMFPDSLHNAKCNFDLLHMDI 647
GH S +I L+ + P ++K C +CHL+K K F H + F+L+H+D
Sbjct: 563 GHPSFAKIDTLSDVLMLPKQKINKDSSHCHVCHLSKQKHLPFKSVNHIREKAFELVHIDT 622
Query: 648 WGPISVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIR 707
WGP SV +V S+RYFLT++DD SR W+ LLK+K +V +F+ +V+TQ+ V +R
Sbjct: 623 WGPFSVPTVDSYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVR 682
Query: 708 SDNGPEFMLHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWG 767
SDN E ++ ++ GI C TP+QN VERKHQH+LN+ARAL+FQS +P + WG
Sbjct: 683 SDNAHELKFNELFAKEGIKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWG 742
Query: 768 YAILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSR 827
+L AVFL++R+ S V+ N++PYE L GK D L+ FG LC+ STS SR+K D R
Sbjct: 743 DCVLTAVFLINRLLSPVINNETPYERLTKGKP-DYSSLKAFGCLCYCSTSPKSRTKFDPR 801
Query: 828 ARKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPYKSATST 874
A+ C+FLG+ G KG+ LLD+ ++ + +SR V F+E I P+ S+ T
Sbjct: 802 AKACIFLGYPMGYKGYKLLDIETYSVSISRHVIFYEDIFPFASSNIT 848
>At1g36620 hypothetical protein
Length = 1152
Score = 414 bits (1064), Expect = e-115
Identities = 264/823 (32%), Positives = 413/823 (50%), Gaps = 61/823 (7%)
Query: 61 SPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPGDANYE 120
SPYY+H ++P + + LNG NY WA + L AK K FI+G + +Y
Sbjct: 23 SPYYLHPSDHPHHVLTPMLLNGENYERWAKLTRNNLQAKQKLGFIDGTLTKPSSDSPDYP 82
Query: 121 AWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNL 180
W + N+++ W+ S+ + SI V+NA W LR R+S G R+ +L+ +I
Sbjct: 83 RWLQTNSMLVGWLYASLDPQVQKSISVVDNARVMWESLRTRYSVGNASRVHQLKYDIVAC 142
Query: 181 KQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGL 240
+Q+ + +Y+ ++K +W++L+ Y P+ C C P + ++ R+ + +FL+GL
Sbjct: 143 RQDGQTAANYFGKLKVMWDDLDDYEPLLTCCCNRPSCTHRVRQSQR-RDHERIHQFLMGL 201
Query: 241 NET-FSVVNSQIL---MSNPLPPIAKVVSLAMQHERQ-SETGENEESKSLVKMAEGKKTY 295
+ F + IL + + + S + ER + T EE V A
Sbjct: 202 DAAKFGTSRTNILGRLSRDDNISLDSIYSEIIAEERHLTITRSKEERVDAVGFAVQTGVN 261
Query: 296 GKGKAPGSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYPTTSKSKPAFNNVSHINNI 355
++ G CTHC + H+ D C++LHG P K + + S
Sbjct: 262 AIASVTRVNNMGP--------CTHCGRSNHSADTCFKLHGVPEWYTEK--YGDTS----- 306
Query: 356 T*GYDSEDDQEESSKSQ---RGNGDLFTADQYKTIMAMIQQVTATSASQKHTESGKAFAN 412
S + SS + RG+G+ + A+ +T + E+ A N
Sbjct: 307 -----SGRGRGRSSTPRGRGRGHGNSYKANNAQTSHPSSSASEFSDIPGVSKEAWSAIRN 361
Query: 413 LVTKSAVCGANTAGNGKHSTLSYSSQYDSRDWIIDSGASDHICFNKLCFDTLNRIKPVSV 472
L+ + S+ S + + D++IDSGAS H+ + I V
Sbjct: 362 LLKQDTAT----------SSEKLSGKTNCVDFLIDSGASHHMTGFLDLLTEIYEIPHSVV 411
Query: 473 RLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFV 532
LPN G + + + LTHVL+VP+ + LISV +L + C +F + C +
Sbjct: 412 VLPNAKHTIATKKGTLILGANMKLTHVLFVPDLSCTLISVARLLRELHCFAIFTDKVCVI 471
Query: 533 QEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVERISDSDQLIPPGALWHFRLGH 592
Q++ +K IG+G+ + + +YHL +T NVV+ ++ ALWH RLGH
Sbjct: 472 QDRTSKMLIGVGT-ESNGVYHLQRAEVVATS---ANVVKWKTNK-------ALWHMRLGH 520
Query: 593 LSHDRILALNALYPSID------VSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMD 646
S L+++ PS++ +CD+C AK R F +S + A+ F +H D
Sbjct: 521 PSSK---VLSSVLPSLEDFDSCSSDLKTICDVCVRAKQTRASFSESFNKAEECFSFIHYD 577
Query: 647 IWGPISVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVI 706
+WGP +S YFLT++DDHSR VW+ L+ K EV ++ F+A+ QF+ VK +
Sbjct: 578 VWGPYKHASSCGAHYFLTIVDDHSRAVWIHLMLAKSEVASLLQQFIAMASRQFNKQVKTV 637
Query: 707 RSDNGPEFM-LHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKM 765
RS+NG EFM L +++ GI+HQ SCV T QQNGRVERKH+HILN+AR+LLFQ+ LP
Sbjct: 638 RSNNGTEFMSLKSYFAERGIVHQISCVYTHQQNGRVERKHRHILNVARSLLFQAELPISF 697
Query: 766 WGYAILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLD 825
W ++L A +L++R + +L+ K+PY+IL+ + LRVFGSLCFA + K
Sbjct: 698 WEESVLTAAYLINRTPTPILDGKTPYKILY-SQPPSYASLRVFGSLCFARKHTGRLDKFQ 756
Query: 826 SRARKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPY 868
R RKC+F+G+ G KG+ + D+ S FVSRDV F E I P+
Sbjct: 757 ERGRKCIFVGYPHGQKGWRIYDIESQIFFVSRDVVFQEDIFPF 799
>At1g57640
Length = 1444
Score = 413 bits (1061), Expect = e-115
Identities = 271/850 (31%), Positives = 404/850 (46%), Gaps = 112/850 (13%)
Query: 49 PHVVLEPAQNPISPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGE 108
P V+E + ISPY + + +N A + L NY WA K L ++ KF F++G
Sbjct: 8 PPSVIE-VRRTISPYDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGT 66
Query: 109 IPIAVPGDANYEAWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLV 168
IP + G + E W N L+ SW+ ++ S + +I + A D W +R RFS
Sbjct: 67 IPQPLDGSPDLEDWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGP 126
Query: 169 RIAELQNEIGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFR 228
+ +++ ++ KQ ++V YY ++ +W+ + YRP+ C+C C C + +R
Sbjct: 127 KNQKMKADLATCKQEGMTVEGYYGKLNKIWDNINSYRPLRICKCG-RCICNLGTDQEKYR 185
Query: 229 EQDNAIRFLLGLNET-FSVVNSQILMSNPLPPIAKVVSLAMQHERQ-SETGENEESKSLV 286
E D ++L GLNET F + S + PLP + +V ++ Q E + NEE +
Sbjct: 186 EDDMVHQYLYGLNETKFHTIRSSLTSRVPLPGLEEVYNIVRQEEDMVNNRSSNEERTDVT 245
Query: 287 KMAEGKKTYGKGKAPGSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYP--------- 337
A + + + + S K CTHC + GH+ + C+ L GYP
Sbjct: 246 AFAVQMRP--RSEVISEKFANSEKLQNKKLCTHCNRGGHSPENCFVLIGYPEWWGDRPRG 303
Query: 338 ------TTSKSK----PAFNN----VSHINNIT*GY--DSEDDQEESSKSQRGNGDLFTA 381
+TS+ + P FN +++N + G SE + S R T
Sbjct: 304 KSNSNGSTSRGRGRFGPGFNGGQPRPTYVNVVMTGPFPSSEHVNRVITDSDRDAVSGLTD 363
Query: 382 DQYKTIMAMIQQVTATSASQKHTESGKAFANLVTKSAVCGANTAGNGKHSTLSYSSQYDS 441
+Q++ ++ ++ + + S H T+S C T+
Sbjct: 364 EQWRGVVKLLNAGRSDNKSNAHE----------TQSGTCSLFTS---------------- 397
Query: 442 RDWIIDSGASDHICFNKLCFDTLNRIKPVSVRLPNGISIQTCYAGVVSITKQILLTHVLY 501
WI+D+GAS H+ N + + PV + L +G G V + ++L V Y
Sbjct: 398 --WILDTGASHHMTGNLELLSDMRSMSPVLIILADGNKRVAVSEGTVRLGSHLILKSVFY 455
Query: 502 VPEFTYNLISVHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVVTSPSS 561
V E +LISV ++ N C
Sbjct: 456 VKELESDLISVGQMMDENHC---------------------------------------- 475
Query: 562 TCFAIPNVVERISDSDQLIPPGALWHFRLGHLSHDRILAL--NALYPSIDVSKHFVCDIC 619
V + + P LWH RLGH S D+I+ L L S VCD C
Sbjct: 476 --------VNAAAVHTSVKAPFDLWHRRLGHAS-DKIVNLLPRELLSSGKEILENVCDTC 526
Query: 620 HLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPISVSSVHSHRYFLTVLDDHSRFVWVILLK 679
AK R FP S + + +F L+H D+WGP S RYFLT++DD+SR VWV L+
Sbjct: 527 MRAKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMT 586
Query: 680 RKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPEFM-LHDFYSAHGILHQRSCVNTPQQN 738
K E Q+ +K+F+ALV+ QF +K++RSDNG EF+ + +++ GI H+ SCV TP QN
Sbjct: 587 DKSETQKHLKDFIALVERQFDTEIKIVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQN 646
Query: 739 GRVERKHQHILNIARALLFQSHLPKKMWGYAILHAVFLMSRIQSKVLENKSPYEILFGGK 798
GRVERKH+HILNIARAL FQS+LP + WG IL A +L++R S +L+ KSPYE+L+
Sbjct: 647 GRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTA 706
Query: 799 KIDLQELRVFGSLCFASTSSSSRSKLDSRARKCVFLGFKQGVKGFVLLDLNSHEIFVSRD 858
LRVFGSLC+A + K +R+R+CVF+G+ G KG+ L DL + FVSRD
Sbjct: 707 P-KYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRD 765
Query: 859 VTFHEQILPY 868
V F E PY
Sbjct: 766 VIFQETEFPY 775
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 311 bits (796), Expect = 2e-84
Identities = 212/676 (31%), Positives = 326/676 (47%), Gaps = 78/676 (11%)
Query: 204 YRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGLNET-FSVVNSQILMSNPLPPIAK 262
++P+ C+C C C+ + RE+D FL GL++ F V S ++ P+ P+ +
Sbjct: 69 FKPVRICKCG-GCVCDLGALQEKDREEDKVHEFLSGLDDALFRTVRSSLVSRIPVQPLEE 127
Query: 263 VVSLAMQHERQSETGEN-----EESKSLVKMAEGKKTYGKGKAPGSSSSGSGYKSTGKYC 317
V ++ Q E G N E + K G+G K C
Sbjct: 128 VYNIVRQEEDLLRNGANVLDDQREVNAFAAQMRPKLYQGRGDE----------KDKSMVC 177
Query: 318 THCKKPGHTVDVCYRLHGYPTTSKSKPAFNNVSHINNIT*GYDSEDDQEESSKSQRGNGD 377
HC + GH + CY + GYP +P ++ + +S RG G
Sbjct: 178 KHCNRSGHASESCYAVIGYPEWWGDRPRSRSLQ----------TRGRGGTNSSGGRGRG- 226
Query: 378 LFTADQYKTIMAMIQQVTATSASQKHTESGKAFANLVTKSAVCGANTAGNGKHSTLSYSS 437
A Y + + T A+ T+ + N +T S
Sbjct: 227 ---AAAYANRVTVPNHDTYEQANYALTDEDRDGVNGLT--------------------DS 263
Query: 438 QYDSRDWIIDSGASDHICFNKLCFDTLNRIKPVSVRLPNGISIQTCYAGVVSITKQILLT 497
Q+ + I++SG + L + P+ + L +G + G V + +++
Sbjct: 264 QWRTIKSILNSGKD-------AATEKLTDMDPILIVLADGRERISVKEGTVRLGSNLVMI 316
Query: 498 HVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVVT 557
V YV EF +LIS+ +L NRC + + VQ++ ++ +G G + +H
Sbjct: 317 SVFYVEEFQSDLISIGQLMDENRCVLQMSDRFLVVQDRTSRMVMGAGR-RVGGTFHF--- 372
Query: 558 SPSSTCFAIPNVVERISDSDQLIPPGALWHFRLGHLSHDRILALNALYPSIDVSKHFV-- 615
ST A V+ + + LWH R+GH + R+++L S+ VS +
Sbjct: 373 --RSTEIAASVTVKEEKNYE-------LWHSRMGHPAA-RVVSLIP-ESSVSVSSTHLNK 421
Query: 616 -CDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPISVSSVHSHRYFLTVLDDHSRFVW 674
CD+CH AK R FP S++ F+L++ D+WGP S RYFLT++DD+SR VW
Sbjct: 422 ACDVCHRAKQTRNSFPLSINKTLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVW 481
Query: 675 VILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPEFM-LHDFYSAHGILHQRSCVN 733
+ LL K E +KNF A+ QF+ +K +RSDNG EF+ L F+ G++H+RSCV
Sbjct: 482 LYLLNDKSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLCLTKFFQEQGVIHERSCVA 541
Query: 734 TPQQNGRVERKHQHILNIARALLFQSHLPKKMWGYAILHAVFLMSRIQSKVLENKSPYEI 793
TP++N RVERKH+H+LN+ARAL FQ++LP + WG +L A +L++R S VL + +PYE
Sbjct: 542 TPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYER 601
Query: 794 LFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRARKCVFLGFKQGVKGFVLLDLNSHEI 853
L K+ LRVFGSLC+A + K R+R+CVF+G+ G KG+ L DL +E
Sbjct: 602 LH-KKQPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEF 660
Query: 854 FVSRDVTFHEQILPYK 869
FVSRDV F E P++
Sbjct: 661 FVSRDVVFSELEFPFR 676
Score = 35.4 bits (80), Expect = 0.19
Identities = 24/70 (34%), Positives = 33/70 (46%), Gaps = 5/70 (7%)
Query: 28 MVRQASNNNNNGVQQAHGVQQPHVVLEPAQNPISPYYIHSGENPSATVVSLPLNGRNYNA 87
MV +N N N + + P V + + I PY + S NP A + L G NY+
Sbjct: 1 MVGAPANVNTN--TNTNPIPNPTVEV---RRTILPYDLTSANNPCAVISHPLLTGSNYDE 55
Query: 88 WA*SMKRVLV 97
WA SMK L+
Sbjct: 56 WACSMKTALL 65
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 304 bits (779), Expect = 2e-82
Identities = 246/908 (27%), Positives = 409/908 (44%), Gaps = 132/908 (14%)
Query: 69 ENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPGDANY--------- 119
EN A V + L G NY WA + K L ++ + I + P +A
Sbjct: 2 ENTKALFVPVTLKGVNYLLWARTTKTTLCSRGLWAHI---LTSEAPSEATIREGMEIVHV 58
Query: 120 --EAWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRF-SQGVLVRIAELQNE 176
E W + + + + + NS+ +S+ + + E A + W L + F +Q L R+ E++
Sbjct: 59 GEEKWFQEDQSVLALLQNSLEASLLEAYSYCETAKELWETLFNVFGNQSNLSRVFEVKKA 118
Query: 177 IGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRF 236
I +L Q + ++ + ++LW ELE RP V+ R REQD
Sbjct: 119 INDLSQGDMEFTQHFGKFRSLWAELEMLRPNTLDPKVLIER----------REQDKVFGL 168
Query: 237 LLGLNETFSVVNSQILMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYG 296
LL L+ T++ + +L ++ LP + +V S + + + + +K +
Sbjct: 169 LLTLSSTYNDLIKHLLRADKLPNLEEVCSQIQKEQANRGNYKYDNNKKAL---------- 218
Query: 297 KGKAPGSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYPTTSKSKPAFNNVSHINNIT 356
+C HCK+ GHT + C+ LH + + +P N V+ N
Sbjct: 219 -------------------WCEHCKRSGHTKEKCWTLHPHLRPGRREPRANQVTGEN--- 256
Query: 357 *GYDSEDDQEESSKSQRGNGDLFTADQYKTIMAMIQQVTATSASQKHTESGKAFANLVTK 416
+ +++ S++ GNG A ++LV +
Sbjct: 257 --FGTQEQSGTSNQHLGGNGAAMAAS----------------------------SDLVRR 286
Query: 417 S---AVCGANTAGNGKHSTLSYSSQYDSRDWIIDSGASDHICFNKLCFDTLNRIKPV--S 471
S A+ A +GK SY + + IIDSGAS H+ + ++ I+P +
Sbjct: 287 SDLKALIKALKESSGK----SYHALSSLKPLIIDSGASHHMISDS---KLISNIEPALGN 339
Query: 472 VRLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCF 531
V + NG I G + + + + Y+P FT NL+SV K C +FG
Sbjct: 340 VVIANGDRIPVKGVGDLDLFDKS--SKAFYMPTFTSNLLSVKKATTDLNCYAIFGPNEVH 397
Query: 532 VQEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVERISDSDQLIPPGALWHFRLG 591
Q+ T + +G G K D LY L T PS + + + ++S+ WH RLG
Sbjct: 398 FQDIETSRVLGQGVTK-DGLYVLEDTKPSVPLSSHFSSILGNANSES-------WHARLG 449
Query: 592 HLSHDRILALNALYPSIDVSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPI 651
H H R AL L PS K+ C+ C L K + +FP S + FDL+H D+W
Sbjct: 450 H-PHSR--ALKLLLPSTSF-KNDECEACILGKHCKSVFPKSSTIYEKCFDLIHSDVWTSP 505
Query: 652 SVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNG 711
+S +H+YF+T +D+ S+F W LL K V + NF V + +K++RSDN
Sbjct: 506 CLSR-ENHKYFVTFIDEKSKFTWFTLLPSKDRVLEAFTNFQTYVTNHYDAKIKILRSDNR 564
Query: 712 PEFMLHDF---YSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWGY 768
E+ H F + HGI+HQ SC TPQQNG ERK++H++ + R ++F +++PK W
Sbjct: 565 GEYTSHAFKQHLNKHGIIHQTSCPYTPQQNGVAERKNRHLMEVRRVMMFHTNVPKHFWID 624
Query: 769 AILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRA 828
++ A +L+++ +K+L + SP+E+L K + LRVFG +CF S R+KL ++
Sbjct: 625 GVVSACYLINQTPTKILLDSSPFEVLNKVKPF-INHLRVFGCVCFVLISGEQRNKLQPKS 683
Query: 829 RKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPYKSATSTAWTCLDLEVKDQSS 888
K +F+G+ KG+ L + ++ +SRDV F E Y W +++D +
Sbjct: 684 TKGMFIGYSINQKGYKCYVLETRKVLISRDVKFLESKSYYDKKN---WE----DIQDLTD 736
Query: 889 SSLNIPETTSAAQELISDN---ENFSNT*LPCHTQSETIIEEENTQSETLIEEEEDDTLV 945
S P + +I + N P + ETI + EN + E EEEE++
Sbjct: 737 S----PSDRATNLRIILERLGVSNIQTQTTPRTSNPETITQPENMEEEEEEEEEEEEKQG 792
Query: 946 RQSKRLVM 953
++ + + +
Sbjct: 793 KEQELITL 800
>At1g47650 hypothetical protein
Length = 1409
Score = 298 bits (763), Expect = 1e-80
Identities = 172/457 (37%), Positives = 249/457 (53%), Gaps = 53/457 (11%)
Query: 445 IIDSGASDHICFNKLCFDTLNRIKPVSVRLPNGISIQTCYAGVVSITKQILLTHVLYVPE 504
+IDSGA H+ +K F L+ +V LP G +++ G + + ILL ++L++PE
Sbjct: 333 VIDSGAIHHVSHDKSLFLNLDTSVVSAVNLPAGPTVRISGVGTLRLNDDILLKNILFIPE 392
Query: 505 FTYNLISVHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCF 564
F NLIS+ L V+F + +C +Q+ + +G G + +LY L + P +
Sbjct: 393 FRLNLISISSLTDDIGSRVIFDKTSCEIQDPIKARMLGQGR-RIANLYVLDIEDPIVSVN 451
Query: 565 AIPNVVERISDSDQLIPPGALWHFRLGHLSHDRILALNALYPSIDVSK-----HFVCDIC 619
A+ ++ ++WH RLGH S R L+ + S+ +K C +C
Sbjct: 452 AVVDI--------------SMWHRRLGHASLQR---LDVISDSLGTTKPKNKGSDYCHVC 494
Query: 620 HLAKLKRKMFPDSLHNAKCN--FDLLHMDIWGPISVSSVHSHRYFLTVLDDHSRFVWVIL 677
HLAK ++ FP N CN FDLLH+DIWGP SV +V ++YFLT++DDHSR W+ L
Sbjct: 495 HLAKQRKLPFPSQ--NKVCNEIFDLLHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYL 552
Query: 678 LKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPEFMLHDFYSAHGILHQRSCVNTPQQ 737
L+ K EV F+ V+ Q+ VK +RSDN PE Y GI+ SC TP+Q
Sbjct: 553 LRNKSEVLTVFPAFIEQVENQYKVRVKAVRSDNAPELKFTSLYQQKGIVSFHSCPETPEQ 612
Query: 738 NGRVERKHQHILNIARALLFQSHLPKKMWGYAILHAVFLMSRIQSKVLENKSPYEILFGG 797
N VERKHQHILN++RAL+FQS +P +WG +L AVFL++R S++L NK+PYEIL G
Sbjct: 613 NLVVERKHQHILNVSRALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLSNKTPYEILTGT 672
Query: 798 KKIDLQELRVFGSLCFASTSSSSRSKLDSRARKCVFLGFKQGVKGFVLLDLNSHEIFVSR 857
+ R K R++ CVFLG+ G KG+ L+DL SH +F+SR
Sbjct: 673 VPFYF---------------AKKRHKFQPRSKACVFLGYPAGYKGYKLMDLESHTVFISR 717
Query: 858 DVTFHEQILPYKSATSTAWTCLDLEVKDQSSSSLNIP 894
+V FHE++ P L ++ K +SS L P
Sbjct: 718 NVVFHEEVFP-----------LAVDPKSESSLKLFTP 743
Score = 163 bits (412), Expect = 6e-40
Identities = 92/302 (30%), Positives = 149/302 (48%), Gaps = 24/302 (7%)
Query: 36 NNNGVQQAHGVQQPHVVLEPAQNPISPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRV 95
+ + V A V P ++P Q SP+++HS ++P ++S L+ NY W +M
Sbjct: 41 HKSNVSGASRVIAPPESVDPTQ---SPFFLHSADHPGLNIISHRLDETNYGDWNVAMLIS 97
Query: 96 LVAKNKFKFINGEIPIAVPGDANYEAWDRCNNLIHSWILNSVTSSIANSIVFVENACDAW 155
L AKNK FI+G +P + D N+ W RC +++ SW+LNSV+ I SI+ + +A D W
Sbjct: 98 LDAKNKSGFIDGTLPRPLESDKNFRLWSRCKSMVKSWLLNSVSPQIYRSILRMNDASDIW 157
Query: 156 RDLRDRFSQGVLVRIAELQNEIGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVP 215
RDL RF+ L R L EI + +Q TLS+++YYT +KTLW++LE + P
Sbjct: 158 RDLHSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLESTEELDD-----P 212
Query: 216 CRCEAIEHAKMFREQDNAIRFLLGLNETFSVVNSQILMSNPLPPIAKVVSLAMQHERQSE 275
C C + EQ ++ L GLN++++++ QI+ LP +A+V + Q Q
Sbjct: 213 CICGKAMRLQQKAEQAKIVKLLAGLNDSYAIIRRQIIAKKALPSLAEVYHILDQDNSQQG 272
Query: 276 TGENEESKSLVKMAEGKKTYGKGKAPGSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHG 335
+ +++E C+ + GH + CY+ HG
Sbjct: 273 FSNVVAPPAAFQVSEAMMATN--------------NDVNMLCS--EWVGHIAERCYKKHG 316
Query: 336 YP 337
+P
Sbjct: 317 FP 318
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 293 bits (751), Expect = 3e-79
Identities = 171/431 (39%), Positives = 236/431 (54%), Gaps = 18/431 (4%)
Query: 450 ASDHICFNKLCFDTLNRIKPVSVRLPNGISIQTCYAGVVSITKQILLTHVLYVPEFTYNL 509
AS H+ N + + PV + L +G G V + ++L V YV E +L
Sbjct: 169 ASHHMTGNLELLSGMRSMSPVLIILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESDL 228
Query: 510 ISVHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNV 569
ISV ++ N C V + +Q++ T+ G+G + S CF
Sbjct: 229 ISVGQMMDENHCVVQLADHFLVIQDRTTRMVTGIGKREN-----------GSFCFRGMEN 277
Query: 570 VERISDSDQLIPPGALWHFRLGHLSHDRILAL--NALYPSIDVSKHFVCDICHLAKLKRK 627
+ S + P LWH RLGH S D+I+ L L S VCD C AK R
Sbjct: 278 AAAVHTSVKA--PFDLWHRRLGHAS-DKIVNLLPRELLSSGKEILENVCDTCMRAKQTRD 334
Query: 628 MFPDSLHNAKCNFDLLHMDIWGPISVSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ* 687
FP + + +F L+H D+WGP S RYFLT++DD+SR VWV L+ K E Q+
Sbjct: 335 TFPLRDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKH 394
Query: 688 IKNFVALVKTQFSHHVKVIRSDNGPEFM-LHDFYSAHGILHQRSCVNTPQQNGRVERKHQ 746
+K+F+ALV+ QF +K +RSDNG EF+ + +++ GI H+ SCV TP QNGRVERKH+
Sbjct: 395 LKDFMALVERQFDTEIKTVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHR 454
Query: 747 HILNIARALLFQSHLPKKMWGYAILHAVFLMSRIQSKVLENKSPYEILFGGKKIDLQELR 806
HILNIARAL FQS+LP + WG IL A +L++R S +L+ KSPYE+L+ LR
Sbjct: 455 HILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAP-KYSHLR 513
Query: 807 VFGSLCFASTSSSSRSKLDSRARKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQIL 866
VFGSLC+A + K +R+R+CVF+G+ G KG+ L DL + FVSRDV F E
Sbjct: 514 VFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEF 573
Query: 867 PYKSATSTAWT 877
PY + +T
Sbjct: 574 PYSKMSCNRFT 584
Score = 90.1 bits (222), Expect = 7e-18
Identities = 47/162 (29%), Positives = 81/162 (49%), Gaps = 1/162 (0%)
Query: 49 PHVVLEPAQNPISPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGE 108
P V+E + I PY + + +N A + L NY WA K L ++ KF F++G
Sbjct: 8 PPSVIE-VRRTILPYDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGT 66
Query: 109 IPIAVPGDANYEAWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLV 168
IP + G + E W N L+ SW+ ++ S + +I + A D W +R RFS
Sbjct: 67 IPQPLDGSPDLEDWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGP 126
Query: 169 RIAELQNEIGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQC 210
+ +++ ++ KQ ++V YY ++ +W+ + YRP+ C
Sbjct: 127 KNQKMKADLATCKQEGMTVEGYYGKLNKIWDNINSYRPLRIC 168
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 284 bits (727), Expect = 2e-76
Identities = 156/385 (40%), Positives = 223/385 (57%), Gaps = 28/385 (7%)
Query: 498 HVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLGSLKEDDLYHLVVT 557
+VL++PEF NLIS+ L V+F + +Q+ + +G G + +LY + V
Sbjct: 344 NVLFIPEFRLNLISISSLTDDIGSRVIFDQHAFEIQDLIKGRMLGHGR-RVANLYVMDVE 402
Query: 558 SPSSTCFAIPNVVERISDSDQLIPPGALWHFRLGHLSHDRILALNALYPSIDVSKHF--- 614
+ + A+ ++ + WH RL H S R L+ + S+ +KH
Sbjct: 403 DTNVSVNAVVDI--------------STWHNRLRHASLQR---LDVISESLGTTKHKNKG 445
Query: 615 --VCDICHLAKLKRKMFPDSLHNAKCN--FDLLHMDIWGPISVSSVHSHRYFLTVLDDHS 670
C +CHLAK ++ FP N CN F++LH+DIWGP SV +V ++YFLT++DDHS
Sbjct: 446 SDYCHVCHLAKHRKLSFPSQ--NNVCNEIFEMLHIDIWGPFSVETVDGYQYFLTIVDDHS 503
Query: 671 RFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPEFMLHDFYSAHGILHQRS 730
R W+ LLK K EV +F+ V+ Q+ VK +RSDN PE Y GI+ S
Sbjct: 504 RATWIYLLKTKSEVLTIFHDFIQQVENQYKVKVKAVRSDNAPELRFTSLYQRKGIMAFHS 563
Query: 731 CVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWGYAILHAVFLMSRIQSKVLENKSP 790
C TP+QN VERKHQHILN+ARAL+FQS +P +WG +L AVFL++R S++L NK+P
Sbjct: 564 CPETPEQNSVVERKHQHILNVARALMFQSQVPLFLWGECVLTAVFLINRTPSQLLSNKTP 623
Query: 791 YEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRARKCVFLGFKQGVKGFVLLDLNS 850
YEIL G +LR FG LC++STS R K R++ C+FLG+ G KG+ L+DL S
Sbjct: 624 YEIL-SGTAPQYGQLRTFGCLCYSSTSPKQRHKFQPRSKACIFLGYSSGYKGYKLMDLES 682
Query: 851 HEIFVSRDVTFHEQILPYKSATSTA 875
+ IF+SR+V F E++ P +A
Sbjct: 683 NAIFISRNVVFLEEVFPLAGTKKSA 707
Score = 126 bits (317), Expect = 6e-29
Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 36/277 (12%)
Query: 61 SPYYIHSGENPSATVVSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPGDANYE 120
SP+++HS ++P ++S L+ NY W +M L++
Sbjct: 63 SPFFLHSADHPCLNIISHRLDETNYGDWNVAM---LIS---------------------- 97
Query: 121 AWDRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNL 180
CN ++ SW+LNS++ I SI+ + + D WRDL RF+ L R L EI +L
Sbjct: 98 ----CNTMVKSWLLNSMSPQIYRSILRMNDVSDIWRDLNSRFNMTNLPRTYNLTQEIQDL 153
Query: 181 KQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGL 240
+Q+TLS+++YYT +KTLW++L + PC C + E+ ++FL GL
Sbjct: 154 RQSTLSLSEYYTRLKTLWDQLNSTEELDD-----PCTCGKALRLQQKAERAKIVKFLAGL 208
Query: 241 NETFSVVNSQILMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYGKGKA 300
NE+++++ Q++ LP +A+V + Q S+ G + V + T
Sbjct: 209 NESYAIIRRQVIAKKILPSLAEVYHIVDQD--NSQQGFSNVVAPPVAFQVSEVTVANIID 266
Query: 301 PGSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYP 337
P + C+ + GH + CY+ HG+P
Sbjct: 267 PTICYVQNCPNKGRPMCSFYNRVGHIAERCYKKHGFP 303
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 262 bits (670), Expect = 7e-70
Identities = 149/342 (43%), Positives = 201/342 (58%), Gaps = 16/342 (4%)
Query: 534 EKHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVERISDSDQLIPPGALWHFRLGHL 593
++ ++ IG G + D +Y+L T A + SDQ ALWH RLGH
Sbjct: 52 DRFSRTLIGSGE-ERDGVYYL-------TDVATAKIHTAKVSSDQ-----ALWHQRLGHP 98
Query: 594 SHDRILALNALYPSIDVSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPISV 653
S + +L L S CD+C AK R++FP S + + F L+H D+WGP V
Sbjct: 99 SFSVLSSLPVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNKSIECFSLIHCDVWGPYRV 158
Query: 654 SSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPE 713
S YFLT++DD SR VW LL K EV+ + NF+ + QF VKV+RSDNG E
Sbjct: 159 PSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYTEKQFGKSVKVLRSDNGTE 218
Query: 714 FM-LHDFYSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWGYAILH 772
FM L ++ HGI+HQ SCV TPQQNGRVERKH+HILN+ARA+LFQ+ LP + WG A+L
Sbjct: 219 FMCLASYFREHGIVHQTSCVGTPQQNGRVERKHRHILNVARAILFQASLPIQFWGEAVLT 278
Query: 773 AVFLMSRIQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRARKCV 832
A +L++R + + SPYEIL K + + LRVFGS C+ +S + K R+R CV
Sbjct: 279 AAYLINRTPTSLHNGLSPYEILHNSKP-NYEHLRVFGSACYVHRASRDKDKFGERSRLCV 337
Query: 833 FLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPYKSATST 874
F+G+ KG+ + D+ E VSRDV F E + PY +AT+T
Sbjct: 338 FIGYPFAQKGWKVFDMEKKEFLVSRDVVFREDVFPY-AATNT 378
>At4g16870 retrotransposon like protein
Length = 1474
Score = 255 bits (652), Expect = 9e-68
Identities = 217/838 (25%), Positives = 366/838 (42%), Gaps = 106/838 (12%)
Query: 80 LNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVP---------GDANYEAWDRCNNLIH 130
L NY W+ + +L ++G I P + Y W R + LI
Sbjct: 34 LTSNNYLMWSLQIHALLDGYELAGHLDGSIETPAPTLTTNNVVSANPQYTLWKRQDRLIF 93
Query: 131 SWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNLKQNTLSVNDY 190
S ++ +++ + + A W+ L + +++ I +L+ +I LK+ T ++++Y
Sbjct: 94 SALIGAISPPVQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKKGTKTIDEY 153
Query: 191 YTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGLNETFSVVNSQ 250
TL ++L K ++ R L GL E + V Q
Sbjct: 154 VLSHTTLLDQLAIL-------------------GKPMEHEEQVERILEGLPEDYKTVVDQ 194
Query: 251 ILMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYGKGKAPGSSSSGSGY 310
I + P I ++ HER N E+K L A SSS
Sbjct: 195 IEGKDNTPSITEI------HERLI----NHEAKLLSTAA-------------LSSSSLPM 231
Query: 311 KSTGKYCTHCKKPGHTVDVCYRLHGYPTTSKSKPAFNNVSHINNIT*GYDSEDDQEESSK 370
+ H + R G T+ +P+ NN S + K
Sbjct: 232 SANVAQQRHHNNNRNNNQNKNRTQGNTYTNNWQPSANNKS---------GQRPFKPYLGK 282
Query: 371 SQRGNGDLFTADQYKTIMAMIQQVTATSASQKHTESGKAFANLVTKSAVCGANTAGNGKH 430
Q N +A + + AM Q +++SAS +A
Sbjct: 283 CQICNVQGHSARRCPQLQAM-QPSSSSSASTFTPWQPRA--------------------- 320
Query: 431 STLSYSSQYDSRDWIIDSGASDHICFNKLCFDTLNRIKPVSVRLPNGISIQTCYAG---V 487
L+ + Y + +W++DSGA+ HI + V + +G S++ G +
Sbjct: 321 -NLAMGAPYTANNWLLDSGATHHITSDLNALALHQPYNGDDVMIADGTSLKITKTGSTFL 379
Query: 488 VSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLGSLK 547
S + + L VLYVP+ NL+SV++L N+ V F + V++ +T + G K
Sbjct: 380 PSNARDLTLNKVLYVPDIQKNLVSVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTK 439
Query: 548 EDDLYHLVVTSPSSTC-FAIPNVVERISDSDQLIPPGALWHFRLGHLSH---DRILALNA 603
D+LY VT+P +T F P+ +S WH RLGH S + +++ +
Sbjct: 440 -DELYEWPVTNPKATALFTTPSPKTTLSS----------WHSRLGHPSSSILNTLISKFS 488
Query: 604 LYPSIDVSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPISVSSVHSHRYFL 663
L S+ S C C + K + F S + + + D+W + S +++Y+L
Sbjct: 489 LPVSVSASNKLACSDCFINKSHKLPFSISSIKSTSPLEYIFSDVWMS-PILSPDNYKYYL 547
Query: 664 TVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPEFM-LHDFYSA 722
++D H+R+ W+ L++K +V+ F ALV+ +F ++ + SDNG EF+ L +F +
Sbjct: 548 VLVDHHTRYTWLYPLQQKSQVKSTFIAFKALVENRFQAKIRTLYSDNGGEFIALREFLVS 607
Query: 723 HGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWGYAILHAVFLMSRIQS 782
+GI H S +TP+ NG ERKH+HI+ LL Q+ +P++ W YA AV+L++R+ +
Sbjct: 608 NGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWPYAFAAAVYLINRMPT 667
Query: 783 KVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRARKCVFLGFKQGVKG 842
VL +SP++ LFG K + + LRVFG LCF + +KL+ R+R+CVFLG+
Sbjct: 668 PVLSMESPFQKLFGSKP-NYERLRVFGCLCFPWLRPYTHNKLEERSRRCVFLGYSLTQTA 726
Query: 843 FVLLDLNSHEIFVSRDVTFHEQILPYKSATSTAWTCLDLEVKDQSSSSLNIPETTSAA 900
++ D+ ++ SR V F E P+ + TS L +QSSS L P +S++
Sbjct: 727 YLCFDVEHKRLYTSRHVVFDEASFPFSNLTSQ--NSLPTVTFEQSSSPLVTPILSSSS 782
>At1g44510 polyprotein, putative
Length = 1459
Score = 249 bits (637), Expect = 5e-66
Identities = 218/841 (25%), Positives = 380/841 (44%), Gaps = 115/841 (13%)
Query: 80 LNGRNYNAWA*SMKRVLVAKNKFKFINGEIPI---------AVPGDANYEAWDRCNNLIH 130
L NY W+ + +L + +++ + I V + ++ W R + LI
Sbjct: 33 LTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPPETTTINSVVSANPSFTLWKRQDKLIF 92
Query: 131 SWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNLKQNTLSVNDY 190
S ++ +++ ++ + + N+ W L + +++ I +L+ +I L + T ++++Y
Sbjct: 93 SALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTKTIDEY 152
Query: 191 YTEIKTLWEELEQYRPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGLNETFSVVNSQ 250
T ++L K ++ L GL E + V Q
Sbjct: 153 VQSHTTRLDQLAIL-------------------GKPMEHEEQVEHILKGLPEEYKTVVDQ 193
Query: 251 ILMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYGKGKAPGSSSSGSGY 310
I + P I ++ HER N ESK L + P SSS
Sbjct: 194 IEGKDNTPTITEI------HERLI----NHESKLL-----------SDEVPPSSSFPMSA 232
Query: 311 KSTGK--YCTHCKKPGHTVDVCYRLHGYPTTSKSKPAFNNVSHINNIT*GYDSEDDQEES 368
+ + + +C + H H T + S+P+ N S +
Sbjct: 233 NAVQQRNFNNNCNQNQHKNRYQGNTHNNNTNTNSQPSTYNKSGQRTF---------KPYL 283
Query: 369 SKSQRGNGDLFTADQYKTIMAMIQQVTATSASQKHTESGKAFANLVTKSAVCGANTAGNG 428
K Q + +A + + AM Q+ A+S++ + ANL
Sbjct: 284 GKCQICSVQGHSARRCPQLQAM--QLPASSSAHSPFTPWQPRANL--------------- 326
Query: 429 KHSTLSYSSQYDSRDWIIDSGASDHIC--FNKLCF-DTLNRIKPVSVRLPNGISI-QTCY 484
+ S Y + W++DSGA+ HI N L N + V + G++I QT
Sbjct: 327 -----AIGSPYAANPWLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGS 381
Query: 485 AGVVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFVQEKHTKKRIGLG 544
+ S + + L VLYVP+ NLISV++L N+ V F + V++ +T + G
Sbjct: 382 TFLPSQNRDLALHKVLYVPDIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQG 441
Query: 545 SLKEDDLYHLVVTSPSSTC-FAIPNVVERISDSDQLIPPGALWHFRLGHLSH---DRILA 600
K DDLY VT+P +T F P+ +S WH RLGH S + +L+
Sbjct: 442 RTK-DDLYEWPVTNPPATALFTSPSPKTTLSS----------WHSRLGHPSASILNTLLS 490
Query: 601 LNALYPSIDVSKHFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPISVSSVHSHR 660
+L S+ S C C + K + F S ++ + + D+W +S +++
Sbjct: 491 KFSLPVSVASSNKTSCSDCLINKSHKLPFATSSIHSSSPLEYIFTDVWTSPIISH-DNYK 549
Query: 661 YFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGPEFM-LHDF 719
Y+L ++D ++R+ W+ L++K +V+ F ALV+ +F ++ + SDNG EF+ L DF
Sbjct: 550 YYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVENRFQAKIRTLYSDNGGEFIALRDF 609
Query: 720 YSAHGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWGYAILHAVFLMSR 779
++GI H S +TP+ NG ERKH+HI+ LL Q+ +P++ W YA AV+L++R
Sbjct: 610 LVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWTYAFATAVYLINR 669
Query: 780 IQSKVLENKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRARKCVFLGFKQG 839
+ + VL +SP++ LFG + Q LRVFG LCF +R+KL+ R+++CVFLG+
Sbjct: 670 MPTPVLCLQSPFQKLFGSSP-NYQRLRVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLT 728
Query: 840 VKGFVLLDLNSHEIFVSRDVTFHEQILPYKSATSTAWTCLDLEVKDQSSSSLNIPETTSA 899
++ LD++++ ++ SR V F E P+ ++ +++QS SSL P +S+
Sbjct: 729 QTAYLCLDVDNNRLYTSRHVMFDESTYPFAAS-----------IREQSQSSLVTPPESSS 777
Query: 900 A 900
+
Sbjct: 778 S 778
>At1g53810
Length = 1522
Score = 243 bits (621), Expect = 4e-64
Identities = 213/825 (25%), Positives = 345/825 (41%), Gaps = 114/825 (13%)
Query: 76 VSLPLNGRNYNAWA*SMKRVLVAKNKFKFINGEIPIAVPG-------------DANYEAW 122
V++ LN +NY W + L + F+ G I + + W
Sbjct: 15 VTVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEFYTW 74
Query: 123 DRCNNLIHSWILNSVTSSIANSIVFVENACDAWRDLRDRFSQGVLVRIAELQNEIGNLKQ 182
+ + ++ SW+L S I + +V + W L + F++ R+ ELQ + L++
Sbjct: 75 HQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQTLEK 134
Query: 183 NTLSVNDYYTEIKTLWEELEQY-RPIPQCRCVVPCRCEAIEHAKMFREQDNAIRFLLGLN 241
++ + ++K + ++L P+P E K+F L GL
Sbjct: 135 KDNTMEVFLKDLKHICDQLASVGSPVP-------------EKMKIFSA-------LNGLG 174
Query: 242 ETFSVVNSQILMSNPLPPIAKVVSLAMQHERQSETGENEESKSLVKMAEGKKTYGKGKAP 301
+ + + I S P SL++ G ++ +S V + T A
Sbjct: 175 REYEPIKTTIENSVDSNP-----SLSLDEVASKLRGYDDRLQSYVT----EPTISPHVAF 225
Query: 302 GSSSSGSGYKSTGKYCTHCKKPGHTVDVCYRLHGYPTTSKSKPAFNNVSHINNIT*GYDS 361
+ S SGY R G + K +F+ T G
Sbjct: 226 NVTHSDSGYYHNNN----------------RGKGRSNSGSGKSSFS--------TRGRGF 261
Query: 362 EDDQEESSKSQRGNGDLFTADQYKTIMAMIQQVTATSASQKHTESGKAFANLVTKSAVCG 421
+S SQ GN L K ++ S +H + A A +
Sbjct: 262 HQQISPTSGSQAGNSGLVCQICGKAGHHALKCWHRFDNSYQHEDLPMALATM-------- 313
Query: 422 ANTAGNGKHSTLSYSSQYDSRDWIIDSGASDHICFNKLCFDTLNRIKPV----SVRLPNG 477
++ + + +WI DS AS H+ N+ L + +P S+ + +G
Sbjct: 314 ----------RITDVTDHHGHEWIPDSAASAHVTNNR---HVLQQSQPYHGSDSIMVADG 360
Query: 478 ISIQTCYAG---VVSITKQILLTHVLYVPEFTYNLISVHKLAKRNRCEVVFGEFTCFVQE 534
+ + G + S + +I L VL P+ +L+SV KL C V F + + +
Sbjct: 361 NFLPITHTGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRIND 420
Query: 535 KHTKKRIGLGSLKEDDLYHLVVTSPSSTCFAIPNVVERISDSDQLIPPGALWHFRLGHLS 594
K TKK + +G D LY L ++ + + Q +WH RLGH +
Sbjct: 421 KATKKLLVMGR-NRDGLYSLEEPK-----------LQVLYSTRQNSASSEVWHRRLGHAN 468
Query: 595 HDRILALNALYPSIDVSK--HFVCDICHLAKLKRKMFPDSLHNAKCNFDLLHMDIWGPIS 652
+ + L + I ++K VC+ CHL K R F S NA + +H D+WGP
Sbjct: 469 AEVLHQLASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSP 528
Query: 653 VSSVHSHRYFLTVLDDHSRFVWVILLKRKGEVQQ*IKNFVALVKTQFSHHVKVIRSDNGP 712
SSV RY++ +D +SRF W LK K + F LV+ Q H +K+ + D G
Sbjct: 529 TSSVQGFRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGG 588
Query: 713 EFMLHDFYSA---HGILHQRSCVNTPQQNGRVERKHQHILNIARALLFQSHLPKKMWGYA 769
EF+ F HGI SC TPQQNG ERKH+HI+ + +++FQS LP K W +
Sbjct: 589 EFISSQFLKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLES 648
Query: 770 ILHAVFLMSRIQSKVLE-NKSPYEILFGGKKIDLQELRVFGSLCFASTSSSSRSKLDSRA 828
A F+++ + + L+ N+SPY+ L+ GK + LRVFG C+ + + +K D R+
Sbjct: 649 FFTANFVINLLPTSSLDNNESPYQKLY-GKAPEYSALRVFGCACYPTLRDYASTKFDPRS 707
Query: 829 RKCVFLGFKQGVKGFVLLDLNSHEIFVSRDVTFHEQILPYKSATS 873
KCVFLG+ + KG+ L + I++SR V F E P++S S
Sbjct: 708 LKCVFLGYNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFESIYS 752
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.331 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,042,473
Number of Sequences: 26719
Number of extensions: 1046538
Number of successful extensions: 4393
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3829
Number of HSP's gapped (non-prelim): 240
length of query: 1167
length of database: 11,318,596
effective HSP length: 110
effective length of query: 1057
effective length of database: 8,379,506
effective search space: 8857137842
effective search space used: 8857137842
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0334a.1