BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0327.1
         (91 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g34270 unknown protein                                             105  3e-24
At5g28680 receptor-like protein kinase precursor - like                27  1.4
At2g22840 unknown protein                                              25  6.7
At2g19900 malate oxidoreductase (malic enzyme)                         25  6.7

>At4g34270 unknown protein
          Length = 290

 Score =  105 bits (263), Expect = 3e-24
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query: 9   LVLMQLRVDGVLIRLRDTRMHCVFGGSTNPVILRESCWRESTFQALSAKGTPFDPAVYND 68
           L+   LRVDGVL+RLR+TRMH  FG    P +LRE+CWRE+TFQ+LSAKG P D AV++D
Sbjct: 207 LLRFWLRVDGVLMRLRETRMHYRFGEDEAPTVLRENCWREATFQSLSAKGYPVDLAVWSD 266

Query: 69  PSIISQRLPIVKQMTQNLVISPK 91
           PS ISQRLP++K  TQ L I  K
Sbjct: 267 PSSISQRLPVIKHTTQKLKIPSK 289


>At5g28680 receptor-like protein kinase precursor - like
          Length = 858

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 7/67 (10%)

Query: 24 RDTRMHCVFGGSTNPVILRESCWRESTFQALSAKGTPFDPAVYNDPSIISQRLPIVKQMT 83
          +D  + C   G++ P + ++    E   + L    T   PA Y DPS++S     V  MT
Sbjct: 28 QDISLSC---GASEPAVDQDKKKWEPDTKFLKTPNTVHAPATYQDPSLLS----TVPYMT 80

Query: 84 QNLVISP 90
            +  +P
Sbjct: 81 SRIFTAP 87


>At2g22840 unknown protein
          Length = 530

 Score = 25.0 bits (53), Expect = 6.7
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 43 ESCWRESTFQALSAKGTPFDPAVYNDPSIISQRLPIVKQMTQN 85
          E CWR S     S  G    PA     S   Q +P+++  T N
Sbjct: 37 EDCWRSSKLSRTSTDGFSSSPASAKTLS-FHQGIPLLRSTTIN 78


>At2g19900 malate oxidoreductase (malic enzyme)
          Length = 581

 Score = 25.0 bits (53), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 43  ESCWRESTFQALSAKGTPFDPAVYNDPSIIS 73
           E  +  S  +A+ A G+PFDP  Y     +S
Sbjct: 447 EEAYTWSKGRAIFASGSPFDPVEYEGKVFVS 477


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.331    0.144    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,831,954
Number of Sequences: 26719
Number of extensions: 63864
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 4
length of query: 91
length of database: 11,318,596
effective HSP length: 67
effective length of query: 24
effective length of database: 9,528,423
effective search space: 228682152
effective search space used: 228682152
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)