BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0322.4
         (153 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g37370 unknown protein                                             187  2e-48
At2g40650 unknown protein                                              38  0.002
At1g26650 unknown protein                                              32  0.18
At1g67120 hypothetical protein                                         26  7.4
At2g15540 putative non-LTR retroelement reverse transcriptase          26  9.7

>At5g37370 unknown protein
          Length = 393

 Score =  187 bits (475), Expect = 2e-48
 Identities = 91/110 (82%), Positives = 96/110 (86%)

Query: 8   EIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCRG 67
           EIQ++GR  ESLLEKVL MNILSSDYFKELY LKTY EVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 68  PSTFFCLLY*FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRYVPDPNTV 117
           PST +CLLY FFTM LTVKQMHGLLKH DSPYIR VGFLYLRYV D  T+
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTL 112


>At2g40650 unknown protein
          Length = 355

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 24/93 (25%), Positives = 48/93 (50%), Gaps = 2/93 (2%)

Query: 17  ESLLEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCRGPSTFFCLLY 76
           ++L+EK++   I    ++KE     T   ++D+   ++DH+     G+ R P+ F CL+ 
Sbjct: 18  QNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAM-ELDHLGGTFGGS-RKPTPFLCLIL 75

Query: 77  *FFTMMLTVKQMHGLLKHPDSPYIRVVGFLYLR 109
               +    + +   +K+ D  Y+R++G  YLR
Sbjct: 76  KMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLR 108


>At1g26650 unknown protein
          Length = 335

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 16/58 (27%), Positives = 29/58 (49%)

Query: 18  SLLEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNCRGPSTFFCLL 75
           SLL K   +  +   Y +E+  +  +L ++ +I+ +V     W+     G  TFFC+L
Sbjct: 118 SLLSKAAVVYSVDCSYSREVVDISKFLVILQKIWRRVVFTYVWICILIVGCFTFFCVL 175


>At1g67120 hypothetical protein
          Length = 5138

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 25/84 (29%), Positives = 44/84 (51%), Gaps = 13/84 (15%)

Query: 8    EIQTSGRPIESL--LEKVLCMNILSSDYFKELYRLKTYLEVIDEIYNQVDHVEPWMAGNC 65
            ++ T  R ++SL  LEK +   I+ +  F  L +L  Y EVID      +H   W +G  
Sbjct: 2490 DVSTFTRFLDSLRVLEKKILCEIVGAPSFSVLIQL--YTEVID------NHSFFW-SGLV 2540

Query: 66   RGPSTFFCLLY*FFTMMLTVKQMH 89
                 +  LL+ F++++ ++K+MH
Sbjct: 2541 SSSDEY--LLFSFWSLIKSIKKMH 2562


>At2g15540 putative non-LTR retroelement reverse transcriptase
          Length = 1225

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 12/32 (37%), Positives = 19/32 (58%)

Query: 79  FTMMLTVKQMHGLLKHPDSPYIRVVGFLYLRY 110
           F ++L  KQ+  L++ P+S   RV+   Y RY
Sbjct: 741 FNLVLLAKQLWRLIRFPNSLLSRVLRGRYFRY 772


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.352    0.162    0.599 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,204,291
Number of Sequences: 26719
Number of extensions: 120807
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 5
length of query: 153
length of database: 11,318,596
effective HSP length: 90
effective length of query: 63
effective length of database: 8,913,886
effective search space: 561574818
effective search space used: 561574818
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 55 (25.8 bits)