BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0320a.8
         (1611 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g44510 polyprotein, putative                                       841  0.0
At4g02960 putative polyprotein of LTR transposon                      835  0.0
At1g59265 polyprotein, putative                                       834  0.0
At1g58889 polyprotein, putative                                       833  0.0
At4g16870 retrotransposon like protein                                808  0.0
At1g53810                                                             752  0.0
At4g10690 retrotransposon like protein                                737  0.0
At1g31210 putative reverse transcriptase                              726  0.0
At4g27210 putative protein                                            708  0.0
At4g28900 putative protein                                            692  0.0
At2g20460 putative retroelement pol polyprotein                       685  0.0
At2g16670 putative retroelement pol polyprotein                       626  e-179
At1g60020 hypothetical protein                                        614  e-175
At1g70010 hypothetical protein                                        609  e-174
At4g14460 retrovirus-related like polyprotein                         594  e-169
At4g27200 putative protein                                            510  e-144
At3g45520 copia-like polyprotein                                      463  e-130
At4g10990 putative retrotransposon polyprotein                        462  e-130
At2g06840 putative retroelement pol polyprotein                       452  e-127
At2g21460 putative retroelement pol polyprotein                       435  e-122

>At1g44510 polyprotein, putative
          Length = 1459

 Score =  841 bits (2172), Expect = 0.0
 Identities = 497/1231 (40%), Positives = 677/1231 (54%), Gaps = 144/1231 (11%)

Query: 436  PWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVPAHHSSPVTWCPDSGATHHVT 495
            P L   Q PA ++    F         T   P+A LA    + ++P  W  DSGATHH+T
Sbjct: 300  PQLQAMQLPASSSAHSPF---------TPWQPRANLAIGSPYAANP--WLLDSGATHHIT 348

Query: 496  NNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKN 555
            ++      H P +  E +++ +G GL I+  GS  LPS       L L K+L VP I KN
Sbjct: 349  SDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQ---NRDLALHKVLYVPDIRKN 405

Query: 556  LVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSS 615
            L+SV R    N V   F      V   +T  LLL G   DD    ++ P+T   +    +
Sbjct: 406  LISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDD---LYEWPVTNPPATALFT 462

Query: 616  SPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGI 675
            SP                 SP   L S                                 
Sbjct: 463  SP-----------------SPKTTLSS--------------------------------- 472

Query: 676  SVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYN 735
                 WHSRLGHP   +L   LS  ++ V    S  + C  C ++K H+LP ++S+   +
Sbjct: 473  -----WHSRLGHPSASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFATSSIHSS 527

Query: 736  TPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVEL 795
            +P E +F D+W  + + S   + Y+L  VD  T+YTW++PL++KS   ATFI F+A+VE 
Sbjct: 528  SPLEYIFTDVW-TSPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVEN 586

Query: 796  QFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALL 855
            +F  K++++ +D GGEF  L       GI H  + PHT   NG  ERKHRHIVETGL LL
Sbjct: 587  RFQAKIRTLYSDNGGEFIALRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLL 646

Query: 856  SHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLR 915
            + AS+P ++W +AF  A YLINRM T  L   SP+ KL+G  P+++ L+VFG  CFP+LR
Sbjct: 647  TQASVPREYWTYAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNYQRLRVFGCLCFPWLR 706

Query: 916  PYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYP-------- 966
            PY  NKL   SK CVF+GYS+    Y CLD  + R+Y S+ V+F E  +P+         
Sbjct: 707  PYTRNKLEERSKRCVFLGYSLTQTAYLCLDVDNNRLYTSRHVMFDESTYPFAASIREQSQ 766

Query: 967  --ILFPTDHSSSSSA--EFYPLSTI----PIISHTAPPSSPVLAASGHSSPGPQDSPQQQ 1018
              ++ P + SSSSS     +P S +    P  S    PS P        SP    SP   
Sbjct: 767  SSLVTPPESSSSSSPANSGFPCSVLRLQSPPASSPETPSPPQQQNDSPVSPRQTGSPTPS 826

Query: 1019 Q---------PPSATLSADDPSTS-----TPAVVSPPV---------------PSSSAQS 1049
                       PS ++S  +P+        P   S P                PSSS + 
Sbjct: 827  HHSQVRDSTLSPSPSVSNSEPTAPHENGPEPEAQSNPNSPFIGPLPNPNPETNPSSSIEQ 886

Query: 1050 ADTSASVVAAAPPVIV--------------NTHPMQTRAKNGIVKPRLQPTLLLT----H 1091
                 S   A PP                 N H M+TR+KN I KP+ + +L +     H
Sbjct: 887  RPVDKSTTTALPPNQTTIAATSNSRSQPPKNNHQMKTRSKNNITKPKTKTSLTVALTQPH 946

Query: 1092 L-EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGS 1150
            L EP +V QA+KD KW  AM +E+ A   N TW LVP    +  VGC+W++++K  P+G 
Sbjct: 947  LSEPNTVTQALKDKKWRFAMSDEFDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGL 1006

Query: 1151 INKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNG 1210
            I+KYKARLVAKG++Q  G DY+ETFSPV+K  T+R++L +A+ + WPL+QLDVNNAFL G
Sbjct: 1007 IDKYKARLVAKGFNQQYGVDYAETFSPVIKATTIRVVLDVAVKKNWPLKQLDVNNAFLQG 1066

Query: 1211 VLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDP 1269
             L EEVYM QPPGF  KD+ + VC+L+KA+YGLKQAPRAW+  LK+ L+  GF  S  D 
Sbjct: 1067 TLTEEVYMAQPPGFVDKDRPSHVCRLRKAIYGLKQAPRAWYMELKQHLLNIGFVNSLADT 1126

Query: 1270 SLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTH 1329
            SLF Y      +Y+LVYVDDII+TG+    +  + + L   F++K    L YFLG++ T 
Sbjct: 1127 SLFIYSHGTTLLYLLVYVDDIIVTGSDHKSVSAVLSSLAERFSIKDPTDLHYFLGIEATR 1186

Query: 1330 LSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGAL 1389
             + G L L Q KY++DLL K NMLDA  ++TP+    KL+ + G+ L D +EYRSVVG+L
Sbjct: 1187 TNTG-LHLMQRKYMTDLLAKHNMLDAKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGSL 1245

Query: 1390 QYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPL 1449
            QY   TRP+I+FAVN++ QFM QP  +HW+A KR+LRYL GT THGI L   S   P+ L
Sbjct: 1246 QYLAFTRPDIAFAVNRLSQFMHQPTSDHWQAAKRVLRYLAGTTTHGIFLNSSS---PIHL 1302

Query: 1450 IAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELL 1509
             A+ DADW  D  D  ST+   ++LG N ISW++KKQ  V+RSSTE+EYR++AN  +E+ 
Sbjct: 1303 HAFSDADWAGDSADYVSTNAYVIYLGRNPISWSSKKQRGVSRSSTESEYRAVANAASEIR 1362

Query: 1510 WVQSLLTELKIPFTI-PTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLV 1568
            W+ SLLTEL I     PT++CDN+    +  NP+ H+R KH+ +D  FVR  +Q ++L V
Sbjct: 1363 WLCSLLTELHIRLPHGPTIFCDNIGATYICANPVFHSRMKHIALDYHFVRGMIQSRALRV 1422

Query: 1569 QHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
             HV +  Q AD  TK+LS   FL  + K+ V
Sbjct: 1423 SHVSTNDQLADALTKSLSRPHFLSARSKIGV 1453



 Score =  112 bits (280), Expect = 2e-24
 Identities = 56/187 (29%), Positives = 105/187 (55%), Gaps = 2/187 (1%)

Query: 30  KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
           KL  +N+  W  Q+  ++  + L  ++ +  +IP +  T    ++   NP F  W++QD 
Sbjct: 32  KLTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPPETTTINSVVS--ANPSFTLWKRQDK 89

Query: 90  LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
           L+F+ L+  +SPA+   V +  +S Q+W  +++ +   S     QLR +++ +TKGTKT 
Sbjct: 90  LIFSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTKTI 149

Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
            E++Q   T ++ LA +G+P+   + +E I  GL EEY  ++  I  +    TI+E+   
Sbjct: 150 DEYVQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQIEGKDNTPTITEIHER 209

Query: 210 VISHEAR 216
           +I+HE++
Sbjct: 210 LINHESK 216


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  835 bits (2158), Expect = 0.0
 Identities = 502/1249 (40%), Positives = 684/1249 (54%), Gaps = 156/1249 (12%)

Query: 440  QGQFPAPTAQTPQFPRPPQQQVSTG----MHPQAMLATVPAHHSSPVTWCPDSGATHHVT 495
            QG       Q  QF     QQ ST       P+A LA    ++++   W  DSGATHH+T
Sbjct: 264  QGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNAN--NWLLDSGATHHIT 321

Query: 496  NNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKN 555
            ++      H P +  + +++ +G  +PI   GSA LP+S   + SL L K+L VP+I KN
Sbjct: 322  SDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTS---SRSLDLNKVLYVPNIHKN 378

Query: 556  LVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSS 615
            L+SV R    N V   F      V   +T   LL G   D+ LY +              
Sbjct: 379  LISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDE-LYEW-------------- 423

Query: 616  SPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGI 675
             P++S QA     S  +KA+                                        
Sbjct: 424  -PIASSQAVSMFASPCSKAT---------------------------------------- 442

Query: 676  SVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYN 735
              +  WHSRLGHP   +L   +S  ++ V +       C  C ++K H++P S+S    +
Sbjct: 443  --HSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSS 500

Query: 736  TPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVEL 795
             P E +++D+W    L S   + Y++  VD  T+YTW++PLK+KS    TFI F+++VE 
Sbjct: 501  KPLEYIYSDVWSSPIL-SIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVEN 559

Query: 796  QFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALL 855
            +F  ++ ++ +D GGEF  L  +  + GI H  + PHT   NG  ERKHRHIVE GL LL
Sbjct: 560  RFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLL 619

Query: 856  SHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLR 915
            SHAS+P  +W +AF  A YLINR+ T  LQ  SP+ KL+GQ P+++ LKVFG AC+P+LR
Sbjct: 620  SHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLR 679

Query: 916  PYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPY--------- 965
            PYN +KL   SK+C F+GYS+    Y CL   +GR+Y S+ V F E  FP+         
Sbjct: 680  PYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVST 739

Query: 966  ---------------------PILFPT--------DHSSSSSAEFYPLSTIPIISHTAP- 995
                                 P++ P         D S    +   PL T  + S   P 
Sbjct: 740  SQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPS 799

Query: 996  -----PSSPVLAASGHSSPGPQDSPQQQQ-----------PPSATLSADDPSTSTPAVVS 1039
                 PSS    A  H+ P P   P Q Q           P   + S + P+ ++P   S
Sbjct: 800  SSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQS 859

Query: 1040 P------PVPSSSAQSADTSASV---------VAAAPPVI-------VNTHPMQTRAKNG 1077
            P      P PS+S    ++ +S          V  APP+I       VNTH M TRAK+G
Sbjct: 860  PISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDG 919

Query: 1078 IVKPRLQ---PTLLLTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPA-NRT 1133
            I KP  +    T L  + EP +  QAMKD +W +AM  E  A + N TW LVP P  + T
Sbjct: 920  IRKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVT 979

Query: 1134 PVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAIS 1193
             VGC+WI+  K N DGS+N+YKARLVAKGY+Q  G DY+ETFSPV+K  ++R++L +A+ 
Sbjct: 980  IVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVD 1039

Query: 1194 RGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHR 1252
            R WP++QLDVNNAFL G L +EVYM QPPGF  KD+ + VC+L+KA+YGLKQAPRAW+  
Sbjct: 1040 RSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVE 1099

Query: 1253 LKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFA 1312
            L+  L+  GF  S  D SLF     +  IYMLVYVDDI+ITG    L++     L   F+
Sbjct: 1100 LRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFS 1159

Query: 1313 LKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNE 1372
            +K+   L YFLG++   +  G L L+Q +Y  DLL + NML A  ++TPM    KL+ + 
Sbjct: 1160 VKEHEDLHYFLGIEAKRVPQG-LHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHS 1218

Query: 1373 GSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTL 1432
            G+ L DPTEYR +VG+LQY   TRP++S+AVN++ Q+M  P ++HW A+KR+LRYL GT 
Sbjct: 1219 GTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTP 1278

Query: 1433 THGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARS 1492
             HGI L+       L L AY DADW  D DD  ST+G  V+LG++ ISW++KKQ  V RS
Sbjct: 1279 DHGIFLK---KGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRS 1335

Query: 1493 STEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTVLLTHNPILHTRTKHME 1551
            STEAEYRS+ANT++EL W+ SLLTEL I  +  P +YCDN+    L  NP+ H+R KH+ 
Sbjct: 1336 STEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIA 1395

Query: 1552 MDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVV 1600
            +D  F+R +VQ  +L V HV +  Q AD  TK LS   F     K+ V+
Sbjct: 1396 LDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVI 1444



 Score = 73.9 bits (180), Expect = 7e-13
 Identities = 48/212 (22%), Positives = 98/212 (45%), Gaps = 23/212 (10%)

Query: 30  KLDDSNFYSWKQQVEGVIRSHKLQKFVQ-DPPMIPEKFLTEEDKITENVNPLFADWEQQD 88
           KL  +N+  W +QV  +   ++L  F+    PM P    T+       VNP +  W +QD
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDA---VPRVNPDYTRWRRQD 81

Query: 89  SLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKT 148
            L+++ +L  +S ++ P V +   + Q+WE +   +   S    TQLR            
Sbjct: 82  KLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR------------ 129

Query: 149 ASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEA 208
              F+ R     + LA +G+P+   + +E + + L ++Y  ++  I  + T  +++E+  
Sbjct: 130 ---FITRF----DQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHE 182

Query: 209 MVISHEARFDRMRKKQLADTTSAVFLAQAQNS 240
            +I+ E++   +   ++   T+ V   +  N+
Sbjct: 183 RLINRESKLLALNSAEVVPITANVVTHRNTNT 214


>At1g59265 polyprotein, putative
          Length = 1466

 Score =  834 bits (2155), Expect = 0.0
 Identities = 512/1264 (40%), Positives = 692/1264 (54%), Gaps = 157/1264 (12%)

Query: 416  PYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVP 475
            PY     + G+Q  G S  R    Q    +  +Q P  P  P Q       P+A LA   
Sbjct: 274  PYLGKCQICGVQ--GHSAKRCSQLQHFLSSVNSQQPPSPFTPWQ-------PRANLALGS 324

Query: 476  AHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSF 535
             + S+   W  DSGATHH+T++      H P +  + ++V +G  +PI   GS  L +  
Sbjct: 325  PYSSN--NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKS 382

Query: 536  NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
             P   L L  +L VP+I KNL+SV R    N V   F      V   +T   LL G   D
Sbjct: 383  RP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439

Query: 596  DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
            +    ++ P+        SS P+S              ASP                   
Sbjct: 440  E---LYEWPIA-------SSQPVSLF------------ASP------------------- 458

Query: 656  SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCK 715
                             S  + +  WH+RLGHP   +L   +S  ++SV +    F  C 
Sbjct: 459  -----------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 501

Query: 716  ACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
             C ++K +++P S S      P E +++D+W    L S   + Y++  VD  T+YTW++P
Sbjct: 502  DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDHFTRYTWLYP 560

Query: 776  LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHH 835
            LK+KS    TFI F+ ++E +F  ++ +  +D GGEF  L  +F + GI H  + PHT  
Sbjct: 561  LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 620

Query: 836  QNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYG 895
             NG  ERKHRHIVETGL LLSHAS+P  +W +AF  A YLINR+ T  LQ  SP+ KL+G
Sbjct: 621  HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 680

Query: 896  QYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISK 954
              P++  L+VFG AC+P+LRPYN +KL   S++CVF+GYS+    Y CL  Q+ R+YIS+
Sbjct: 681  TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 740

Query: 955  DVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS------------HTA-PP 996
             V F E+ FP+     T     +    SS  + P +T+P  +            H A PP
Sbjct: 741  HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPP 800

Query: 997  SSP----------------VLAASGHSSP--------GPQDSPQQQQPPSATLSADDPST 1032
            SSP                  ++S  SSP        GPQ + Q  Q  + T S+ + S 
Sbjct: 801  SSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQ 860

Query: 1033 STPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPVI-------- 1064
            + P   SP                 P P++SA S+ TS    S++   PP +        
Sbjct: 861  NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 920

Query: 1065 ---VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
               +NTH M TRAK GI+KP  + +L   L    EP +  QA+KD +W  AM  E  A +
Sbjct: 921  QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 980

Query: 1119 NNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
             N TW LVP P +  T VGC+WI+  K N DGS+N+YKARLVAKGY+Q  G DY+ETFSP
Sbjct: 981  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSP 1040

Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
            V+K  ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF  KD+ N VCKL+
Sbjct: 1041 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1100

Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
            KALYGLKQAPRAW+  L+  L+  GF  S  D SLF     +  +YMLVYVDDI+ITG  
Sbjct: 1101 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1160

Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
             +L+      L   F++K   +L YFLG++   +  G L L+Q +YI DLL + NM+ A 
Sbjct: 1161 PTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLLARTNMITAK 1219

Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEE 1416
             ++TPM    KLS   G+ L DPTEYR +VG+LQY   TRP+IS+AVN++ QFM  P EE
Sbjct: 1220 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1279

Query: 1417 HWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGY 1476
            H +A+KRILRYL GT  HGI L+       L L AY DADW  D DD  ST+G  V+LG+
Sbjct: 1280 HLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1336

Query: 1477 NLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTV 1535
            + ISW++KKQ  V RSSTEAEYRS+ANT++E+ W+ SLLTEL I  T  P +YCDN+   
Sbjct: 1337 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGAT 1396

Query: 1536 LLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKD 1595
             L  NP+ H+R KH+ +D  F+R +VQ  +L V HV +  Q AD  TK LS T F     
Sbjct: 1397 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFAS 1456

Query: 1596 KLNV 1599
            K+ V
Sbjct: 1457 KIGV 1460



 Score =  107 bits (266), Expect = 7e-23
 Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 30  KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
           KL  +N+  W +QV  +   ++L  F+     +P   +  +      VNP +  W++QD 
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD--AAPRVNPDYTRWKRQDK 82

Query: 90  LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
           L+++ +L  +S ++ P V +   + Q+WE +   +   S    TQLR +LK  TKGTKT 
Sbjct: 83  LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTI 142

Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
            +++Q + T  + LA +G+P+   + +E + + L EEY  ++  I  + T  T++E+   
Sbjct: 143 DDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202

Query: 210 VISHEAR 216
           +++HE++
Sbjct: 203 LLNHESK 209


>At1g58889 polyprotein, putative
          Length = 1466

 Score =  833 bits (2151), Expect = 0.0
 Identities = 511/1264 (40%), Positives = 691/1264 (54%), Gaps = 157/1264 (12%)

Query: 416  PYSHATDMQGMQAAGMSFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVP 475
            PY     + G+Q  G S  R    Q    +  +Q P  P  P Q       P+A LA   
Sbjct: 274  PYLGKCQICGVQ--GHSAKRCSQLQHFLSSVNSQQPPSPFTPWQ-------PRANLALGS 324

Query: 476  AHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSF 535
             + S+   W  DSGATHH+T++      H P +  + ++V +G  +PI   GS  L +  
Sbjct: 325  PYSSN--NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKS 382

Query: 536  NPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGD 595
             P   L L  +L VP+I KNL+SV R    N V   F      V   +T   LL G   D
Sbjct: 383  RP---LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKD 439

Query: 596  DGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNAD 655
            +    ++ P+        SS P+S              ASP                   
Sbjct: 440  E---LYEWPIA-------SSQPVSLF------------ASP------------------- 458

Query: 656  SVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCK 715
                             S  + +  WH+RLGHP   +L   +S  ++SV +    F  C 
Sbjct: 459  -----------------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 501

Query: 716  ACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFP 775
             C ++K +++P S S      P E +++D+W    L S   + Y++  VD  T+YTW++P
Sbjct: 502  DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPIL-SHDNYRYYVIFVDHFTRYTWLYP 560

Query: 776  LKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHH 835
            LK+KS    TFI F+ ++E +F  ++ +  +D GGEF  L  +F + GI H  + PHT  
Sbjct: 561  LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPE 620

Query: 836  QNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYG 895
             NG  ERKHRHIVETGL LLSHAS+P  +W +AF  A YLINR+ T  LQ  SP+ KL+G
Sbjct: 621  HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 680

Query: 896  QYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISK 954
              P++  L+VFG AC+P+LRPYN +KL   S++CVF+GYS+    Y CL  Q+ R+YIS+
Sbjct: 681  TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 740

Query: 955  DVLFHEHRFPYPILFPT-----DHSSSSSAEFYPLSTIPIIS------------HTA-PP 996
             V F E+ FP+     T     +    SS  + P +T+P  +            H A PP
Sbjct: 741  HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPP 800

Query: 997  SSP----------------VLAASGHSSP--------GPQDSPQQQQPPSATLSADDPST 1032
            SSP                  ++S  SSP        GPQ + Q  Q  + T S+ + S 
Sbjct: 801  SSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQ 860

Query: 1033 STPAVVSP-----------------PVPSSSAQSADTS---ASVVAAAPPVI-------- 1064
            + P   SP                 P P++SA S+ TS    S++   PP +        
Sbjct: 861  NNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 920

Query: 1065 ---VNTHPMQTRAKNGIVKPRLQPTL---LLTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
               +NTH M TRAK GI+KP  + +L   L    EP +  QA+KD +W  AM  E  A +
Sbjct: 921  QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 980

Query: 1119 NNGTWTLVPLPANR-TPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
             N TW LVP P +  T VGC+WI+  K N DGS+N+YKAR VAKGY+Q  G DY+ETFSP
Sbjct: 981  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSP 1040

Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
            V+K  ++R++L +A+ R WP++QLDVNNAFL G L ++VYM QPPGF  KD+ N VCKL+
Sbjct: 1041 VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLR 1100

Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
            KALYGLKQAPRAW+  L+  L+  GF  S  D SLF     +  +YMLVYVDDI+ITG  
Sbjct: 1101 KALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGND 1160

Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
             +L+      L   F++K   +L YFLG++   +  G L L+Q +YI DLL + NM+ A 
Sbjct: 1161 PTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTG-LHLSQRRYILDLLARTNMITAK 1219

Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEE 1416
             ++TPM    KLS   G+ L DPTEYR +VG+LQY   TRP+IS+AVN++ QFM  P EE
Sbjct: 1220 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1279

Query: 1417 HWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGY 1476
            H +A+KRILRYL GT  HGI L+       L L AY DADW  D DD  ST+G  V+LG+
Sbjct: 1280 HLQALKRILRYLAGTPNHGIFLK---KGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1336

Query: 1477 NLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT-IPTVYCDNMSTV 1535
            + ISW++KKQ  V RSSTEAEYRS+ANT++E+ W+ SLLTEL I  T  P +YCDN+   
Sbjct: 1337 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGAT 1396

Query: 1536 LLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKD 1595
             L  NP+ H+R KH+ +D  F+R +VQ  +L V HV +  Q AD  TK LS T F     
Sbjct: 1397 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFAS 1456

Query: 1596 KLNV 1599
            K+ V
Sbjct: 1457 KIGV 1460



 Score =  107 bits (266), Expect = 7e-23
 Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 30  KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
           KL  +N+  W +QV  +   ++L  F+     +P   +  +      VNP +  W++QD 
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD--AAPRVNPDYTRWKRQDK 82

Query: 90  LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
           L+++ +L  +S ++ P V +   + Q+WE +   +   S    TQLR +LK  TKGTKT 
Sbjct: 83  LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTI 142

Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
            +++Q + T  + LA +G+P+   + +E + + L EEY  ++  I  + T  T++E+   
Sbjct: 143 DDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202

Query: 210 VISHEAR 216
           +++HE++
Sbjct: 203 LLNHESK 209


>At4g16870 retrotransposon like protein
          Length = 1474

 Score =  808 bits (2086), Expect = 0.0
 Identities = 496/1244 (39%), Positives = 672/1244 (53%), Gaps = 162/1244 (13%)

Query: 446  PTAQTPQFPRPPQQQVSTGMHPQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHV 505
            P  Q  Q          T   P+A LA    + ++   W  DSGATHH+T++      H 
Sbjct: 297  PQLQAMQPSSSSSASTFTPWQPRANLAMGAPYTAN--NWLLDSGATHHITSDLNALALHQ 354

Query: 506  PSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARD 565
            P +  + +++ +G  L I   GS  LPS+      L L K+L VP I KNLVSV R    
Sbjct: 355  PYNGDD-VMIADGTSLKITKTGSTFLPSN---ARDLTLNKVLYVPDIQKNLVSVYRLCNT 410

Query: 566  NNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACL 625
            N V   F      V   +T  LLL G   D+    ++ P+T   +    ++P        
Sbjct: 411  NQVSVEFFPASFQVKDLNTGTLLLQGRTKDE---LYEWPVTNPKATALFTTP-------- 459

Query: 626  ASKSAANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRL 685
                     SP   L S                                      WHSRL
Sbjct: 460  ---------SPKTTLSS--------------------------------------WHSRL 472

Query: 686  GHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADL 745
            GHP   +L   +S  ++ V  + S    C  C ++K H+LP S S+    +P E +F+D+
Sbjct: 473  GHPSSSILNTLISKFSLPVSVSASNKLACSDCFINKSHKLPFSISSIKSTSPLEYIFSDV 532

Query: 746  WGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQ 805
            W    L S   + Y+L  VD  T+YTW++PL++KS   +TFI F+A+VE +F  K++++ 
Sbjct: 533  WMSPIL-SPDNYKYYLVLVDHHTRYTWLYPLQQKSQVKSTFIAFKALVENRFQAKIRTLY 591

Query: 806  TDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFW 865
            +D GGEF  L       GI H  + PHT   NG  ERKHRHIVETGL LL+ AS+P ++W
Sbjct: 592  SDNGGEFIALREFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYW 651

Query: 866  DHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLH 925
             +AF AA YLINRM T  L   SP+ KL+G  P+++ L+VFG  CFP+LRPY  NKL   
Sbjct: 652  PYAFAAAVYLINRMPTPVLSMESPFQKLFGSKPNYERLRVFGCLCFPWLRPYTHNKLEER 711

Query: 926  SKECVFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPY------------------- 965
            S+ CVF+GYS+    Y C D +  R+Y S+ V+F E  FP+                   
Sbjct: 712  SRRCVFLGYSLTQTAYLCFDVEHKRLYTSRHVVFDEASFPFSNLTSQNSLPTVTFEQSSS 771

Query: 966  PILFPTDHSSS------SSA-----EFYPLSTIPIISHTAPP------------------ 996
            P++ P   SSS      SS      +  P  T P   H++ P                  
Sbjct: 772  PLVTPILSSSSVLPSCLSSPCTVLHQQQPPVTTPNSPHSSQPTTSPAPLSPHRSTTMDFQ 831

Query: 997  ------SSPVLAASG--HSSP------GPQDSPQQQQPPSATLS----------ADDPST 1032
                  SSP+L++S   +S P      GP+  P+ Q PP   LS            +P+ 
Sbjct: 832  VPQVRSSSPLLSSSSSLNSEPTAPNENGPE--PEAQSPPIGPLSNPTHEAFIGPLPNPNR 889

Query: 1033 S-------TPAVVSPPVPSSSAQSADTSASVVAAAPPVIV---NTHPMQTRAKNGIVKPR 1082
            +       TPA    PV  ++  +     +V  A+        N H M+TRAKN I KP 
Sbjct: 890  NPTNEIEPTPAPHPKPVKPTTTTTTPNRTTVSDASHQPTAPQQNQHNMKTRAKNNIKKPN 949

Query: 1083 LQPTLLLT-----HLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGC 1137
             + +L  T       EPT+V QA+KD KW  AM +E+ A   N TW LVP   ++  VGC
Sbjct: 950  TKFSLTATLPNRSPSEPTNVTQALKDKKWRFAMSDEFDAQQRNHTWDLVP-HESQLLVGC 1008

Query: 1138 KWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWP 1197
            KW++++K  P+G+I+KYKARLVAKG++Q  G DY+ETFSPV+K  T+RL+L +A+ + W 
Sbjct: 1009 KWVFKLKYLPNGAIDKYKARLVAKGFNQQYGVDYAETFSPVIKSTTIRLVLDVAVKKDWE 1068

Query: 1198 LQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEV 1256
            ++QLDVNNAFL G L EEVYM QPPGF  KD+   VC+L+KA+YGLKQAPRAW+  LK+ 
Sbjct: 1069 IKQLDVNNAFLQGTLTEEVYMAQPPGFIDKDRPTHVCRLRKAIYGLKQAPRAWYMELKQH 1128

Query: 1257 LIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQL 1316
            L   GF  S  D SLF Y      +Y+LVYVDDII+TG+  S I  +   L   F++K  
Sbjct: 1129 LFNIGFVNSLSDASLFIYCHGTTFVYVLVYVDDIIVTGSDKSSIDAVLTSLAERFSIKDP 1188

Query: 1317 GQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSAL 1376
              L YFLG++ T    G L L Q KYI DLL K NM DA  + TP+    KL+ + G+ L
Sbjct: 1189 TDLHYFLGIEATRTKQG-LHLMQRKYIKDLLAKHNMADAKPVLTPLPTSPKLTLHGGTKL 1247

Query: 1377 KDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGI 1436
             D +EYRSVVG+LQY   TRP+I++AVN++ Q M QP E+HW+A KR+LRYL GT THGI
Sbjct: 1248 NDASEYRSVVGSLQYLAFTRPDIAYAVNRLSQLMPQPTEDHWQAAKRVLRYLAGTSTHGI 1307

Query: 1437 LLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEA 1496
             L     T PL L A+ DADW  D DD  ST+   ++LG N ISW++KKQ  VARSSTE+
Sbjct: 1308 FL---DTTSPLNLHAFSDADWAGDSDDYVSTNAYVIYLGKNPISWSSKKQRGVARSSTES 1364

Query: 1497 EYRSLANTTAELLWVQSLLTELKIPFTI-PTVYCDNMSTVLLTHNPILHTRTKHMEMDIF 1555
            EYR++AN  +E+ W+ SLL++L I   I P+++CDN+    L  NP+ H+R KH+ +D  
Sbjct: 1365 EYRAVANAASEVKWLCSLLSKLHIRLPIRPSIFCDNIGATYLCANPVFHSRMKHIAIDYH 1424

Query: 1556 FVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            FVR  +Q  +L V HV +  Q AD  TK LS   F   + K+ V
Sbjct: 1425 FVRNMIQSGALRVSHVSTRDQLADALTKPLSRAHFQSARFKIGV 1468



 Score =  105 bits (261), Expect = 3e-22
 Identities = 52/187 (27%), Positives = 102/187 (53%), Gaps = 2/187 (1%)

Query: 30  KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDS 89
           KL  +N+  W  Q+  ++  ++L   +      P   LT  + ++   NP +  W++QD 
Sbjct: 33  KLTSNNYLMWSLQIHALLDGYELAGHLDGSIETPAPTLTTNNVVS--ANPQYTLWKRQDR 90

Query: 90  LLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTA 149
           L+F+ L+  +SP + P V +   + Q+W+ + + +   S     QLR ++K + KGTKT 
Sbjct: 91  LIFSALIGAISPPVQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKKGTKTI 150

Query: 150 SEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAM 209
            E++    T+++ LA +G+P+   + +E I +GL E+Y  ++  I  +    +I+E+   
Sbjct: 151 DEYVLSHTTLLDQLAILGKPMEHEEQVERILEGLPEDYKTVVDQIEGKDNTPSITEIHER 210

Query: 210 VISHEAR 216
           +I+HEA+
Sbjct: 211 LINHEAK 217


>At1g53810 
          Length = 1522

 Score =  752 bits (1942), Expect = 0.0
 Identities = 459/1182 (38%), Positives = 637/1182 (53%), Gaps = 121/1182 (10%)

Query: 471  LATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSAL 530
            +  V  HH     W PDS A+ HVTNN  +     P    + ++V +G  LPI   GS  
Sbjct: 315  ITDVTDHHGHE--WIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGS 372

Query: 531  LPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLT 590
            + SS   +  + LK++L+ P I K+L+SVS+   D      F A+   ++ + T +LL+ 
Sbjct: 373  IASS---SGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVM 429

Query: 591  GTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVP 650
            G    DGLY  + P  +     + +S  S +            A+  +  Q A+   I+ 
Sbjct: 430  GR-NRDGLYSLEEPKLQVLYSTRQNSASSEVW-----HRRLGHANAEVLHQLASSKSIII 483

Query: 651  CNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSV 710
             N      V  TV +  +C+ G                    L   LS  N S P     
Sbjct: 484  IN-----KVVKTVCE--ACHLGKSTR----------------LPFMLSTFNASRP----- 515

Query: 711  FSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKY 770
                    L ++H                    DLWGP+   S  GF Y++  +D  +++
Sbjct: 516  --------LERIH-------------------CDLWGPSPTSSVQGFRYYVVFIDHYSRF 548

Query: 771  TWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIHRL 828
            TW +PLK KSD  +TF+ FQ +VE Q GHK+K  Q DGGGEF       H Q  GI   +
Sbjct: 549  TWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDHGIQQNM 608

Query: 829  TCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTL-QGA 887
            +CP+T  QNG  ERKHRHIVE GL+++  + +PL++W  +F  A ++IN + T++L    
Sbjct: 609  SCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLLPTSSLDNNE 668

Query: 888  SPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-DQ 946
            SPY KLYG+ P++ +L+VFG AC+P LR Y S K    S +CVF+GY+  +KGY+CL   
Sbjct: 669  SPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYKGYRCLYPP 728

Query: 947  SGRIYISKDVLFHEHRFP----YPILFPTDHSSSSSAEF---------------YPLSTI 987
            +GRIYIS+ V+F E+  P    Y  L P D +    A F               YP+S+I
Sbjct: 729  TGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSRYPVSSI 788

Query: 988  PIISHTAPPSSPVLAASGHSSPGPQDSPQQQQ--------PPSATLSADDPST-----ST 1034
            P    T   ++P   A+  + P   D   Q           P  T   D  S      S 
Sbjct: 789  PQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVSGSPERTTGLDSASIGDSYHSP 848

Query: 1035 PAVVSPPVPSSSAQSADTSASVVAAAP-----PVIVNTHPMQTRAKNGIVKPRLQPTLLL 1089
             A  S P P+ S+ ++    S +  AP       + N H M TR K GI KP  +  +LL
Sbjct: 849  TADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEHAMVTRGKEGISKPN-KRYVLL 907

Query: 1090 THL----EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKE 1145
            TH     EP +V +A+K   W  AMQEE        TWTLVP   N   +G  W++R K 
Sbjct: 908  THKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGSMWVFRTKL 967

Query: 1146 NPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNN 1205
            + DGS++K KARLVAKG+ Q +G DY ET+SPVV+  TVRLIL +A    W L+Q+DV N
Sbjct: 968  HADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQMDVKN 1027

Query: 1206 AFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQA 1264
            AFL+G L E VYM QP GF  K K + VC L K+LYGLKQ+PRAWF R    L+ FGF  
Sbjct: 1028 AFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLEFGFIC 1087

Query: 1265 SKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLG 1324
            S  DPSLF Y S+   I +L+YVDD++ITG +   +  L A L+  F +K +GQ+ YFLG
Sbjct: 1088 SLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYFLG 1147

Query: 1325 VQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRS 1384
            +Q+    +G L ++Q KY  DLL   +M + + + TP+   +    N+     DPT +RS
Sbjct: 1148 IQI-QTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFRS 1206

Query: 1385 VVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMT 1444
            + G LQY T+TRP+I FAVN VCQ M QP    +  +KRILRY+KGT++ GI     S +
Sbjct: 1207 LAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSSS 1266

Query: 1445 ------RPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEY 1498
                      L AY D+D+ +  + RRS  G C F+G N+ISW++KKQ  V+RSSTEAEY
Sbjct: 1267 VVSAYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEY 1326

Query: 1499 RSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFV 1557
            RSL+ T +E+ W+ S+L E+ +     P ++CDN+S V LT NP  H RTKH ++D  ++
Sbjct: 1327 RSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPAFHARTKHFDVDHHYI 1386

Query: 1558 REKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            RE+V  K+L+V+H+P   Q ADIFTK+L    F  L+ KL V
Sbjct: 1387 RERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGV 1428



 Score =  104 bits (259), Expect = 5e-22
 Identities = 84/333 (25%), Positives = 136/333 (40%), Gaps = 72/333 (21%)

Query: 24  SHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPE--KFLTEEDKITENVNPLF 81
           S+ +++ L+  N+  WK Q E  +    L  FV      P   + +T  +  +E  NP F
Sbjct: 12  SNCVTVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEF 71

Query: 82  ADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKN 141
             W Q D ++ +WLL + +  IL  V+ C  S+QVW  + + FN  S ++  +L+  L+ 
Sbjct: 72  YTWHQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQT 131

Query: 142 ITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYN---QT 198
           + K   T   FL+ +K I + LAS+G PV  +  + +  +GL  EY  + T I N     
Sbjct: 132 LEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGLGREYEPIKTTIENSVDSN 191

Query: 199 TYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQAMWTQ 258
              ++ EV + +  ++ R                                    Q+  T+
Sbjct: 192 PSLSLDEVASKLRGYDDRL-----------------------------------QSYVTE 216

Query: 259 PAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRG----RGRGRNV 314
           P      T++   A +V  S       DSGY + + + +     G G+     RGRG + 
Sbjct: 217 P------TISPHVAFNVTHS-------DSGYYHNNNRGKGRSNSGSGKSSFSTRGRGFHQ 263

Query: 315 Q---------------CTYCSKWGHDAASCWSR 332
           Q               C  C K GH A  CW R
Sbjct: 264 QISPTSGSQAGNSGLVCQICGKAGHHALKCWHR 296


>At4g10690 retrotransposon like protein
          Length = 1515

 Score =  737 bits (1902), Expect = 0.0
 Identities = 438/1093 (40%), Positives = 614/1093 (56%), Gaps = 105/1093 (9%)

Query: 594  GDDGLYYFDG---PLTKASSQP----QSSSPLSSIQACLASKSAANKASPAIDLQSATVS 646
            GDD +   +G   P+T   + P    Q + PL  +  C           P I     +VS
Sbjct: 349  GDDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVLVC-----------PGITKSLLSVS 397

Query: 647  PIV---PCN---NADSVNVSS--TVSDLVSCNSGSGISVY------------------DL 680
             +    PC+   ++DSV +    T   L   N   G+ V                   ++
Sbjct: 398  KLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKDVPFQTYYSTRQQSSDDEV 457

Query: 681  WHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFEL 740
            WH RLGHP+ +VL+  +    I V  NK+  + C+AC + K+ RLP  +S  V + P E 
Sbjct: 458  WHQRLGHPNKEVLQHLIKTKAIVV--NKTSSNMCEACQMGKVCRLPFVASEFVSSRPLER 515

Query: 741  VFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHK 800
            +  DLWGPA + S+ GF Y++  +D  +++TW +PLK KSD  + F+ FQ +VE Q+ HK
Sbjct: 516  IHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHK 575

Query: 801  LKSVQTDGGGEFKP--LTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHA 858
            +   Q DGGGEF      +H    GI   ++CPHT  QNG  ER+HR++ E GL+L+ H+
Sbjct: 576  IAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHS 635

Query: 859  SMPLQFWDHAFLAATYLINRMSTTTLQ-GASPYFKLYGQYPDFKSLKVFGSACFPFLRPY 917
             +P + W  AF  + +L N + ++TL    SPY  L+G  P + +L+VFGSAC+P+LRPY
Sbjct: 636  KVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPY 695

Query: 918  NSNKLSLHSKECVFIGYSINHKGYKCLDQ-SGRIYISKDVLFHEHRFPYPILFPTDHSSS 976
              NK    S  CVF+GY+  +KGY+CL   +G++YI + VLF E +FPY  ++    + S
Sbjct: 696  AKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQTIS 755

Query: 977  SSAEF-------------------------YPLSTI---------PIISHTAPPSSPVLA 1002
             S  F                         +P +T+         P I+ TA      +A
Sbjct: 756  GSPLFTAWQKGFSSTALSRETPSTNVEDIIFPSATVSSSVPTGCAPNIAETATAPDVDVA 815

Query: 1003 ASGHS--SPGPQDSPQ-QQQPPSATLSADDPST-STPAVVSPPVPSSSAQSADTSA---- 1054
            A+      P P  S     QP  +T   +  ST S  A+ S   P S   S    +    
Sbjct: 816  AAHDMVVPPSPITSTSLPTQPEESTSDQNHYSTDSETAISSAMTPQSINVSLFEDSDFPP 875

Query: 1055 --SVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLT---HLEPTSVKQAMKDAKWYKA 1109
              SV+++       +HPM TRAK+GI KP  +  L      + EP SVK+A+KD  W  A
Sbjct: 876  LQSVISSTTAAPETSHPMITRAKSGITKPNPKYALFSVKSNYPEPKSVKEALKDEGWTNA 935

Query: 1110 MQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGF 1169
            M EE   +    TW LVP       +GCKW+++ K N DGS+++ KARLVA+GY Q +G 
Sbjct: 936  MGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQEEGV 995

Query: 1170 DYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK 1229
            DY ET+SPVV+  TVR IL +A    W L+QLDV NAFL+  L+E V+M QPPGFE   +
Sbjct: 996  DYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFEDPSR 1055

Query: 1230 -NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVD 1288
             + VCKL+KA+Y LKQAPRAWF +    L+++GF  S  DPSLF Y   +  +++L+YVD
Sbjct: 1056 PDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLLLYVD 1115

Query: 1289 DIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLT 1348
            D+I+TG +  L+QQL   L + F +K +G L YFLG+Q  H  N  L L+Q KY SDLL 
Sbjct: 1116 DMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQ-AHYHNDGLFLSQEKYTSDLLV 1174

Query: 1349 KVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQ 1408
               M D +++ TP+Q  + L +       +PT +R + G LQY T+TRP+I FAVN VCQ
Sbjct: 1175 NAGMSDCSSMPTPLQ--LDLLQGNNKPFPEPTYFRRLAGKLQYLTLTRPDIQFAVNFVCQ 1232

Query: 1409 FMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTS 1468
             M  P    +  +KRIL YLKGT+T GI L   S      L  Y D+DW    D RRST 
Sbjct: 1233 KMHAPTMSDFHLLKRILHYLKGTMTMGINL---SSNTDSVLRCYSDSDWAGCKDTRRSTG 1289

Query: 1469 GSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIP-FTIPTV 1527
            G C FLGYN+ISW+AK+   V++SSTEAEYR+L+   +E+ W+  LL E+ +P   IP +
Sbjct: 1290 GFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWIGFLLQEIGLPQQQIPEM 1349

Query: 1528 YCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSP 1587
            YCDN+S V L+ NP LH+R+KH ++D ++VRE+V   +L V+H+P+  Q ADIFTK+L  
Sbjct: 1350 YCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKHIPASQQLADIFTKSLPQ 1409

Query: 1588 TRFLLLKDKLNVV 1600
              F  L+ KL VV
Sbjct: 1410 APFCDLRFKLGVV 1422



 Score = 82.0 bits (201), Expect = 3e-15
 Identities = 72/288 (25%), Positives = 108/288 (37%), Gaps = 70/288 (24%)

Query: 67  LTEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNA 126
           +T++D  +E  N  F  W + D L+  W+  +LS   L  VI    + +VW  +   FN 
Sbjct: 55  VTKDDIQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNR 114

Query: 127 KSRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEE 186
            S  +   L+  L   +K  KT   +L  +K I + L SIG PVT ++ +  + +GL +E
Sbjct: 115 FSTTRKYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFPVTEQEKIFGVLNGLGKE 174

Query: 187 YSALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTA 246
           Y ++ TVI          E    V       D + K    D   + + A ++ +P     
Sbjct: 175 YESIATVI----------EHSLDVYPGPCFDDVVYKLTTFDDKLSTYTANSEVTPH---- 220

Query: 247 PAPPPPQAMWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGR 306
                  A +T                            D  Y +R   N   G YG  R
Sbjct: 221 ------LAFYT----------------------------DKSYSSRGNNNSRGGRYGNFR 246

Query: 307 GRG----RGRNVQ------------------CTYCSKWGHDAASCWSR 332
           GRG    RGR                     C  C K+GH A  C++R
Sbjct: 247 GRGSYSSRGRGFHQQFGSGSNNGSGNGSKPTCQICRKYGHSAFKCYTR 294



 Score = 67.8 bits (164), Expect = 5e-11
 Identities = 49/141 (34%), Positives = 70/141 (48%), Gaps = 5/141 (3%)

Query: 477 HHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFN 536
           + +S   W PDS AT H+TN      +    S  + ++VGNG  LPI  IG+  L  S  
Sbjct: 317 NQASSHEWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNIS-- 374

Query: 537 PTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDD 596
              +L L+ +L+ P ITK+L+SVS+   D    F+F ++   +  + T +LL  G     
Sbjct: 375 -QGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGN-KHK 432

Query: 597 GLYYF-DGPLTKASSQPQSSS 616
           GLY   D P     S  Q SS
Sbjct: 433 GLYVLKDVPFQTYYSTRQQSS 453


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  726 bits (1875), Expect = 0.0
 Identities = 435/1151 (37%), Positives = 625/1151 (53%), Gaps = 146/1151 (12%)

Query: 484  WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
            W PDS AT HVT++             + +LVG+G  LPI   GS  + SS      + L
Sbjct: 322  WHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSS---NGKIPL 378

Query: 544  KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDG 603
             ++L+VP+I K+L+SVS+   D      F AN   +    T +++ TG    +GLY  + 
Sbjct: 379  NEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGP-RRNGLYVLEN 437

Query: 604  PLTKASSQPQSSSPLSSIQACLASKS--------AANKA------SPAIDLQSATVSPIV 649
                     Q    L S + C A++         A +KA      S AI +  +  SP+ 
Sbjct: 438  ---------QEFVALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVC 488

Query: 650  -PCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNK 708
             PC    S  +   +SD                 SR+ HP                    
Sbjct: 489  EPCQMGKSSRLPFLISD-----------------SRVLHP-------------------- 511

Query: 709  SVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACT 768
                      L ++H                    DLWGP+ + S+ G  Y+   VD  +
Sbjct: 512  ----------LDRIH-------------------CDLWGPSPVVSNQGLKYYAIFVDDYS 542

Query: 769  KYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIH 826
            +Y+W +PL  KS+  + FI+FQ +VE Q   K+K  Q+DGGGEF    L +H  + GI H
Sbjct: 543  RYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHH 602

Query: 827  RLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQG 886
            R++CP+T  QNG  ERKHRH+VE GL++L H+  P +FW  +F  A Y+INR+ ++ L+ 
Sbjct: 603  RISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKN 662

Query: 887  ASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-D 945
             SPY  L+G+ PD+ SL+VFGSAC+P LRP   NK    S +CVF+GY+  +KGY+C   
Sbjct: 663  LSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYP 722

Query: 946  QSGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIPI--------ISHTAPPS 997
             +G++YIS++V+F+E   P+                 P  + P+        IS  + P+
Sbjct: 723  PTGKVYISRNVIFNESELPF---------KEKYQSLVPQYSTPLLQAWQHNKISEISVPA 773

Query: 998  SPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTS---- 1053
            +PV   S              +P      A    T     ++ P P+S+ + +D      
Sbjct: 774  APVQLFS--------------KPIDLNTYAGSQVTEQ---LTDPEPTSNNEGSDEEVNPV 816

Query: 1054 ASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLTHL---EPTSVKQAMKDAKWYKAM 1110
            A  +AA    ++N+H M TR+K GI KP  +  L+ + +   EP ++  AMK   W +A+
Sbjct: 817  AEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNEAV 876

Query: 1111 QEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFD 1170
             EE   +    TW+LVP   +   +  KW+++ K +PDGSI+K KARLVAKG+ Q +G D
Sbjct: 877  HEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVD 936

Query: 1171 YSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK- 1229
            Y ETFSPVV+  T+RL+L ++ S+GWP++QLDV+NAFL+G L+E V+M QP GF    K 
Sbjct: 937  YLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKP 996

Query: 1230 NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDD 1289
              VC+L KA+YGLKQAPRAWF      L+ +GF  SK DPSLF  +     +Y+L+YVDD
Sbjct: 997  THVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDD 1056

Query: 1290 IIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTK 1349
            I++TG+  SL++ L   L + F++K LG   YFLG+Q+   +NG L L+QT Y +D+L +
Sbjct: 1057 ILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANG-LFLHQTAYATDILQQ 1115

Query: 1350 VNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQF 1409
              M D   + TP+    +L         +PT +RS+ G LQY TITRP+I FAVN +CQ 
Sbjct: 1116 AGMSDCNPMPTPLP--QQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQR 1173

Query: 1410 MAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSG 1469
            M  P    +  +KRILRY+KGT+  G+   P      L L AY D+D     + RRST+G
Sbjct: 1174 MHSPTTSDFGLLKRILRYIKGTIGMGL---PIKRNSTLTLSAYSDSDHAGCKNTRRSTTG 1230

Query: 1470 SCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPT-VY 1528
             C+ LG NLISW+AK+Q  V+ SSTEAEYR+L     E+ W+  LL +L IP  +PT VY
Sbjct: 1231 FCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVY 1290

Query: 1529 CDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPT 1588
            CDN+S V L+ NP LH R+KH + D  ++RE+V    +  QH+ +  Q AD+FTK+L   
Sbjct: 1291 CDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRR 1350

Query: 1589 RFLLLKDKLNV 1599
             F+ L+ KL V
Sbjct: 1351 AFVDLRSKLGV 1361



 Score =  107 bits (267), Expect = 6e-23
 Identities = 91/318 (28%), Positives = 133/318 (41%), Gaps = 49/318 (15%)

Query: 27  LSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPE--KFLTEEDKITENVNPLFADW 84
           +++KL DSN+  WK Q E ++ S KL  FV      P   + +   +  +E  NPL+  W
Sbjct: 17  VTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYESW 76

Query: 85  EQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITK 144
              D L+ +WL  TLS  +L +V     S Q+W  +   FN  S A+   LR  L+ ++K
Sbjct: 77  FCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQLLSK 136

Query: 145 GTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTIS 204
             K  S + +  KTI + L+SIG+PV     +    +GL  +Y  + TVI +  +     
Sbjct: 137 KEKPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGLGRDYDPITTVIQSSLSKLPTP 196

Query: 205 EVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQN-SPSSSTAPAPPPPQAMWTQPAPAP 263
                V+S    FD   K Q  +  ++V    A N   S S +P   P Q          
Sbjct: 197 TFND-VVSEVQGFD--SKLQSYEEAASVTPHLAFNIERSESGSPQYNPNQ---------- 243

Query: 264 SSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYG-RGRGRGR--------GRNV 314
                                   G G R  QN+  GGY  RGRG  +        G   
Sbjct: 244 -----------------------KGRG-RSGQNKGRGGYSTRGRGFSQHQSSPQVSGPRP 279

Query: 315 QCTYCSKWGHDAASCWSR 332
            C  C + GH A  C++R
Sbjct: 280 VCQICGRTGHTALKCYNR 297


>At4g27210 putative protein
          Length = 1318

 Score =  708 bits (1827), Expect = 0.0
 Identities = 398/954 (41%), Positives = 539/954 (55%), Gaps = 79/954 (8%)

Query: 679  DLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPF 738
            ++WH RLGHPH  +L+                                          P 
Sbjct: 310  EVWHRRLGHPHPQILQ------------------------------------------PL 327

Query: 739  ELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFG 798
            E V  DLWGP ++ S  GF Y+   +D  ++++W++PLK KSD    F+ F  +VE Q  
Sbjct: 328  ERVHCDLWGPTTITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFLAFHKLVENQLS 387

Query: 799  HKLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLS 856
             K+   Q DGGGEF       H Q  GI  +L+CPHT  QNG  ERKHRH+VE GL++L 
Sbjct: 388  QKISVFQCDGGGEFVSHKFLQHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLF 447

Query: 857  HASMPLQFWDHAFLAATYLINRMSTTTL-QGASPYFKLYGQYPDFKSLKVFGSACFPFLR 915
             + +P +FW  AF  A +LIN + T+ L +  SPY KLY + PD+ SL+ FGSACFP LR
Sbjct: 448  QSHVPHKFWVEAFFTANFLINLLPTSALKESISPYEKLYDKKPDYTSLRSFGSACFPTLR 507

Query: 916  PYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFPY--------- 965
             Y  NK +  S +CVF+GY+  +KGY+CL   +GR+YIS+ V+F E  +P+         
Sbjct: 508  DYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHP 567

Query: 966  ----PILF--------PTDHSSSSSAEFYPLST---IPIISHTAPPSSPVLAASGHSSPG 1010
                P+L         P   +S+S +   PL T    P +     P  P L      S  
Sbjct: 568  QPRTPLLAAWLRSSDSPAPSTSTSPSSRSPLFTSADFPPLPQRKTPLLPTLVPISSVSHA 627

Query: 1011 PQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPM 1070
               + QQ     +  + D  S S           S ++     ASV         N HPM
Sbjct: 628  SNITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPM 687

Query: 1071 QTRAKNGIVKPRLQPTLL---LTHLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVP 1127
             TRAK GI KP  +   L   +++ EP +V  A+K   W  AM EE        TW+LVP
Sbjct: 688  VTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVP 747

Query: 1128 LPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLI 1187
              ++   +G KW++R K + DG++NK KAR+VAKG+ Q +G DY ET+SPVV+  TVRL+
Sbjct: 748  YKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLV 807

Query: 1188 LSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAP 1246
            L LA +  W ++Q+DV NAFL+G L+E VYM QP GF    K + VC L K++YGLKQ+P
Sbjct: 808  LHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSP 867

Query: 1247 RAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQ 1306
            RAWF +    L+ FGF  SK DPSLF Y  +   I +L+YVDD++ITG S   +  L A 
Sbjct: 868  RAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAA 927

Query: 1307 LHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGV 1366
            L+  F +  +GQL YFLG+QV    NG L ++Q KY  DLL   +M     + TP+   +
Sbjct: 928  LNKEFRMTDMGQLHYFLGIQVQRQQNG-LFMSQQKYAEDLLIAASMEHCTPLPTPLPVQL 986

Query: 1367 KLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILR 1426
                ++     DPT +RS+ G LQY T+TRP+I FAVN VCQ M QP    +  +KRILR
Sbjct: 987  DRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILR 1046

Query: 1427 YLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQ 1486
            Y+KGT+T GI     S   P  L AY D+DWG+    RRS  G C F+G NL+SW++KK 
Sbjct: 1047 YIKGTITMGI---SYSRDSPTLLQAYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKH 1103

Query: 1487 SLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVLLTHNPILHT 1545
              V+RSSTEAEY+SL++  +E+LW+ +LL EL+IP    P ++CDN+S V LT NP  H 
Sbjct: 1104 PTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHA 1163

Query: 1546 RTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            RTKH ++D  FVRE+V  K+L+V+H+P   Q ADIFTK+L    F+ L+ KL V
Sbjct: 1164 RTKHFDIDFHFVRERVALKALVVKHIPGSEQIADIFTKSLPYEAFIHLRGKLGV 1217



 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 44/116 (37%), Positives = 64/116 (54%), Gaps = 4/116 (3%)

Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
           W PDS AT HVTN+P       P    + ++V +G  LPI   GS  L SS   + ++ L
Sbjct: 177 WLPDSAATAHVTNSPRSLQQSQPYHGTDAIMVDDGNYLPITHTGSTNLASS---SGTVPL 233

Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLY 599
             +L+ PSITK+L+S+S+  +D      F  +   V+ + T +LLL G+   DGLY
Sbjct: 234 TDVLVCPSITKSLLSMSKLTQDFPCTVEFEYDGVRVNDKATKKLLLMGS-NRDGLY 288



 Score = 50.4 bits (119), Expect = 8e-06
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 134 QLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTV 193
           +L+  L+N++K  KT   +L  +K I + LAS+G PVT +  + A  +GL  EY  + T 
Sbjct: 49  ELQRRLQNVSKRDKTMDAYLNDLKNICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTT 108

Query: 194 IYNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLA 235
           I N         +E  VI     +D   +  L +TT + ++A
Sbjct: 109 IENSMDTQPGPSLE-NVIPKLTGYDDRLQGYLEETTISPYVA 149


>At4g28900 putative protein
          Length = 1415

 Score =  692 bits (1787), Expect = 0.0
 Identities = 436/1163 (37%), Positives = 608/1163 (51%), Gaps = 177/1163 (15%)

Query: 484  WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
            W  DSGAT H+TN+        P S ++ ++VGN   LPI  IGSA+L S+     +L L
Sbjct: 293  WVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSN---QGNLPL 349

Query: 544  KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDG 603
            + +L+ P+ITK+L+SVS+   D      F ++   V  + T +LL  GT  +D LY  + 
Sbjct: 350  RDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTRHND-LYLLEN 408

Query: 604  PLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNADSVNVSSTV 663
            P                  AC +S+  A                                
Sbjct: 409  P---------------KFMACYSSRQQAT------------------------------- 422

Query: 664  SDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLH 723
            SD             ++WH RLGHP+ DVL+Q L   N ++  +K+  S C AC + K+ 
Sbjct: 423  SD-------------EVWHMRLGHPNQDVLQQLLR--NKAIVISKTSHSLCDACQMGKIC 467

Query: 724  RLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTC 783
            +LP +SS+ V +   E V  DLWGPA + SS GF Y++  +D  +++TW +PL+ KSD  
Sbjct: 468  KLPFASSDFVSSRLLERVHCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLKSDFF 527

Query: 784  ATFINFQAMVELQFGHKLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVE 841
            + F+ FQ MVE Q   K+ S Q DGGGEF      SH  + GI   ++CP+T  QNG  E
Sbjct: 528  SVFLTFQKMVENQCQQKIASFQCDGGGEFISNQFVSHLAECGIRQLISCPYTPQQNGIAE 587

Query: 842  RKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQG-ASPYFKLYGQYPDF 900
            RKHRHI E G +++    +P   W  AF  + +L N + ++ L+   SPY  L G+ P +
Sbjct: 588  RKHRHITELGSSMMFQGKVPQFLWVEAFYTSNFLCNLLPSSVLKDQKSPYEVLMGKAPVY 647

Query: 901  KSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFH 959
             SL+VFG AC+P LRPY SNK    S  CVF GY+  +KGYKC    +G+IYI++ VLF 
Sbjct: 648  TSLRVFGCACYPNLRPYASNKFDPKSLLCVFTGYNEKYKGYKCFHPPTGKIYINRHVLFD 707

Query: 960  EHRFPYPILFPTDHSSSSS-------AEFYPLSTIPI------ISHTAP----------- 995
            E +F +  ++    S ++S       + F P S IP       IS+TA            
Sbjct: 708  ESKFLFSDIYSDKVSGTNSTLVSAWQSNFLPKS-IPATPEVLDISNTAASFSDEQGEFSG 766

Query: 996  -------------PSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPV 1042
                          S P+  +   S    Q+SPQ + P S+  S +D   S  +  S   
Sbjct: 767  AVGGGGCGCTADLDSVPIGNSLPSSPVTQQNSPQPETPISSAGSGNDAEDSELSENSENS 826

Query: 1043 PSSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPR---LQPTLLLTHLEPTSVKQ 1099
             SS    A T      AA      +HPM TR+K+GI KP       T+   +  P +VK 
Sbjct: 827  ESSVFSEATTETE---AADNTNDQSHPMITRSKSGIFKPNPKYAMFTVKSNYPVPKTVKT 883

Query: 1100 AMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLV 1159
            A+KD  W  AM EEY +     TW LVP  +  TP+GC+W+++ K   DG++++ KARLV
Sbjct: 884  ALKDPGWTDAMGEEYDSFEETHTWDLVPPDSFITPLGCRWVFKTKLKADGTLDRLKARLV 943

Query: 1160 AKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMV 1219
            AKGY Q +G DY ET+SPVV+  TVR IL +A    W ++QLDV NAFL+G L+E VYM 
Sbjct: 944  AKGYEQEEGVDYMETYSPVVRTATVRTILHVATINKWEIKQLDVKNAFLHGDLKETVYMY 1003

Query: 1220 QPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQ 1278
            QPPGFE++D+ + VCKL KA+YGLKQAPRAWF +    L+ FGF  +  DPSLF +   +
Sbjct: 1004 QPPGFENQDRPDYVCKLNKAIYGLKQAPRAWFDKFSTFLLEFGFICTYSDPSLFVFLKGR 1063

Query: 1279 GCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLN 1338
              +++L+Y+DD+++TG                                           N
Sbjct: 1064 DLMFLLLYMDDMLLTG-------------------------------------------N 1080

Query: 1339 QTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPE 1398
              KY  DLL    M D A + TP+   +     +  +  DPT +RS+             
Sbjct: 1081 NKKYAMDLLVAAGMADCAPMPTPLPLQLDKVPGQQESFADPTYFRSL------------- 1127

Query: 1399 ISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWG 1458
               AVN VCQ M  P    +  +KR+LRYLKG +  G+ L        + L AY D+DW 
Sbjct: 1128 ---AVNLVCQKMHSPTVADFNLLKRVLRYLKGKVQMGLNLH---NNTDITLRAYSDSDWA 1181

Query: 1459 SDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTEL 1518
            +  + RRS  G C FLG N+ISW+AK+   V+RSSTEAEYR+L+    E+ W+ SLL E+
Sbjct: 1182 NCKETRRSVGGFCTFLGTNIISWSAKRHPTVSRSSTEAEYRTLSIAATEVKWISSLLREI 1241

Query: 1519 KI-PFTIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQK 1577
             I     P +YCDN+S V LT NP +H R+K  ++D  +VRE+V   +L+V+HVP+ HQ 
Sbjct: 1242 GIYQPAPPELYCDNLSAVYLTANPAMHNRSKAFDVDFHYVRERVALGALVVKHVPASHQL 1301

Query: 1578 ADIFTKALSPTRFLLLKDKLNVV 1600
            ADIFTK+L    F  L+ KL VV
Sbjct: 1302 ADIFTKSLPQRPFFDLRYKLGVV 1324



 Score =  101 bits (252), Expect = 3e-21
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 2/195 (1%)

Query: 12  SSSSSSSLSQAFSHKLSIKLDDSNFYSWKQQVEGVIRSHKLQKFVQDPPMIPE--KFLTE 69
           + +S SS +  FSH +++KL  +N+  WK Q E  + + +L  FV      P   + +  
Sbjct: 2   ADNSDSSSALCFSHYVTLKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRN 61

Query: 70  EDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSR 129
            D++TE  NP F  W Q D  +  WLL +LS   L +V     S +VW  +   +N  S 
Sbjct: 62  GDQVTEATNPDFLTWVQNDQKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKKYNRVSA 121

Query: 130 AQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSA 189
           ++ + L+  L  ++K  K+  E+L  +K I + L SIG PV   + +  + +GL +EY  
Sbjct: 122 SRKSDLQRRLNPVSKNEKSMLEYLNCVKQICDQLDSIGCPVPENEKIFGVLNGLGQEYML 181

Query: 190 LMTVIYNQTTYFTIS 204
           + T+I      + +S
Sbjct: 182 VSTMIKGSMDTYPMS 196



 Score = 34.7 bits (78), Expect = 0.46
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 290 GNRDEQNRNSGGYG------RGRGRGRGRNVQCTYCSKWGHDAASCWSR 332
           GNR   N  + G G       G     G    C  C+K+GH A  CW R
Sbjct: 218 GNRGRNNYTTKGRGFPQQISSGSPSDSGTRPTCQICNKYGHSAYKCWKR 266


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  685 bits (1768), Expect = 0.0
 Identities = 477/1540 (30%), Positives = 730/1540 (46%), Gaps = 223/1540 (14%)

Query: 78   NPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRN 137
            +P F  W + +S++ +WLL+++SP I  ++++   +  +W ++   FN  +  ++  L  
Sbjct: 119  DPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNLTQ 178

Query: 138  ELKNITKGTKTASEFLQRIKTIVNTLAS---IGEPVTFRDHLEAIFDGLSEEYSALMTVI 194
            E++++ +GT + SE+   +KT+ + L S   + +P T     +A+      E + +M  +
Sbjct: 179  EIQDLRQGTMSLSEYYTLLKTLWDQLDSTEALDDPCTCG---KAVRLYQKAEKAKIMKFL 235

Query: 195  YNQTTYFTISEVEAMVISHEARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQA 254
                  + I  V   +I+         KK L        +    NS         P    
Sbjct: 236  AGLNESYAI--VRRQIIA---------KKALPSLAEVYHILDQDNSQKGFFNVVAP---- 280

Query: 255  MWTQPAPAPSSTMAQPPATSVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRGRGRGRNV 314
                PA    S ++  P TS     P    V S                   G  +GR  
Sbjct: 281  ----PAAFQVSEVSHSPITS-----PEIMYVQS-------------------GPNKGRPT 312

Query: 315  QCTYCSKWGHDAASCWSR---PSGVSSNANSSANSAQSGNSGSNFSVPGVNLGFSPMQFG 371
             C++C++ GH A  C+ +   P G +    SS    +              +  SP +  
Sbjct: 313  -CSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKP-------QAVAAQVTLSPDKMT 364

Query: 372  GFPSMANFGFPPYAPYNSMLPQYGSSVLSPSSMPPWSPWCIPPTPYSHATDMQGMQAAGM 431
            G        F P    N  L    SS L P  + P +      +    A+  Q +  +G+
Sbjct: 365  GQLETLAGNFSPDQIQN--LIALFSSQLQPQIVSPQT-----ASSQHEASSSQSVAPSGI 417

Query: 432  SFVRPWLPQGQFPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVPAHHSSPVTWCPDSGAT 491
             F                       P      G      +  V  +  S  TW  DSGAT
Sbjct: 418  LF----------------------SPSTYCFIG------ILAVSHNSLSSDTWVIDSGAT 449

Query: 492  HHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLILKKLLLVPS 551
            HHV+++  +F   + +S    + +  G  + I  +G+ L+         +IL+ +L +P 
Sbjct: 450  HHVSHDRKLF-QTLDTSIVSFVNLPTGPNVRISGVGTVLI------NKDIILQNVLFIPE 502

Query: 552  ITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTKASSQ 611
               NL+S+S    D      F  + C +  QD  + L  G     G  Y           
Sbjct: 503  FRLNLISISSLTTDLGTRVIFDPSCCQI--QDLTKGLTLGEGKRIGNLY----------- 549

Query: 612  PQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLVSCNS 671
                                      +D QS  +          SVN    VS       
Sbjct: 550  -------------------------VLDTQSPAI----------SVNAVVDVS------- 567

Query: 672  GSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSN 731
                    +WH RLGHP    L     +   +   NK   ++C  C L+K  +L   S+N
Sbjct: 568  --------VWHKRLGHPSFSRLDSLSEVLGTTRHKNKK-SAYCHVCHLAKQKKLSFPSAN 618

Query: 732  TVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQA 791
             + N+ FEL+  D+WGP S+E+  G+ YFLT VD  ++ TW++ LK KSD    F  F  
Sbjct: 619  NICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFID 678

Query: 792  MVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETG 851
            +VE Q+  ++KSV++D   E    T  ++  GI+   +CP T  QN  VERKH+HI+   
Sbjct: 679  LVENQYDTRVKSVRSDNAKEL-AFTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVA 737

Query: 852  LALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACF 911
             AL+  ++M L +W    L A +LINR  +  L   +P+  L G+ PD+  LK FG  C+
Sbjct: 738  RALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCY 797

Query: 912  PFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYPILFP 970
                    +K    S+ CVF+GY    KGYK LD +S  ++IS++V FHE  FP   L  
Sbjct: 798  SSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFP---LAS 854

Query: 971  TDHSSSSSAEFYPLSTIPIISHTAPPSSPVLAASGHSS--PGPQDSPQQQQPPSATLSAD 1028
            +  S++++++ +             P  P+ + +  +S  P PQ SP  Q          
Sbjct: 855  SQQSATTASDVF------------TPMDPLSSGNSITSHLPSPQISPSTQ---------- 892

Query: 1029 DPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLL 1088
                    +    +    A   D     V        ++HP+ +      + P     L 
Sbjct: 893  --------ISKRRITKFPAHLQDYHCYFVNKD-----DSHPISSSLSYSQISP--SHMLY 937

Query: 1089 LTHLEPTSVKQAMKDAK----WYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIK 1144
            + ++    + Q+  +AK    W  A+ +E  A+    TW +  LP  +  VGCKW++ +K
Sbjct: 938  INNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVK 997

Query: 1145 ENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVN 1204
             + DGS+ ++KAR+VAKGY+Q +G DY+ETFSPV K  TV+L+L ++ S+ W L QLD++
Sbjct: 998  FHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDIS 1057

Query: 1205 NAFLNGVLEEEVYMVQPPGF-----EHKDKNLVCKLQKALYGLKQAPRAWFHRLKEVLIR 1259
            NAFLNG LEE +YM  P G+          N+VC+L+K++YGLKQA R WF +    L+ 
Sbjct: 1058 NAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLA 1117

Query: 1260 FGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQL 1319
             GF+    D +LF        I +LVYVDDI+I   +    Q LT  L + F L++LG L
Sbjct: 1118 LGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPL 1177

Query: 1320 DYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDP 1379
             YFLG++V   S G + L+Q KY  +LLT  +MLD    S PM   ++LSKN+G  L+D 
Sbjct: 1178 KYFLGLEVARTSEG-ISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDK 1236

Query: 1380 TEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQ 1439
              YR +VG L Y TITRP+I+FAVNK+CQF + P   H  AV ++L+Y+KGT+  G+   
Sbjct: 1237 EMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFY- 1295

Query: 1440 PCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYR 1499
              S    L L  Y DADWG+ PD RRST+G  +F+G +LISW +KKQ  V+RSS EAEYR
Sbjct: 1296 --SAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYR 1353

Query: 1500 SLANTTAELLWVQSLLTELKIPFTIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVRE 1559
            +LA  + E+ W+ +LL  L++   +P +Y D+ + V +  NP+ H RTKH+E+D   VRE
Sbjct: 1354 ALALASCEMAWLSTLLLALRVHSGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVRE 1413

Query: 1560 KVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
            K+ +  L + HV ++ Q ADI TK L P +F  L  K+++
Sbjct: 1414 KLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSI 1453


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  626 bits (1615), Expect = e-179
 Identities = 362/965 (37%), Positives = 518/965 (53%), Gaps = 70/965 (7%)

Query: 678  YDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHR--LPSSSSNTVYN 735
            Y+LWHSR+GHP   V+   +   ++SV S+  +   C  C  +K  R   P S + T+  
Sbjct: 389  YELWHSRMGHPAARVVS-LIPESSVSV-SSTHLNKACDVCHRAKQTRNSFPLSINKTL-- 444

Query: 736  TPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVEL 795
              FEL++ DLWGP    S  G  YFLT +D  ++  W++ L  KS+      NF AM + 
Sbjct: 445  RIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDR 504

Query: 796  QFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALL 855
            QF  K+K+V++D G EF  LT  FQ+ G+IH  +C  T  +N  VERKHRH++    AL 
Sbjct: 505  QFNVKIKTVRSDNGTEFLCLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALR 564

Query: 856  SHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLR 915
              A++P+QFW    L A YLINR  ++ L  ++PY +L+ + P F  L+VFGS C+   R
Sbjct: 565  FQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLRVFGSLCYAHNR 624

Query: 916  PYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYPILFPTDHS 974
                +K +  S+ CVF+GY    KG++  D +    ++S+DV+F E  FP+ I     H 
Sbjct: 625  NRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEFPFRI----SHE 680

Query: 975  SSSSAEFYPLSTIPIIS----------HTAPPSSPVLAASG-----------HSSPGPQD 1013
             +   E       PI+             A P+ P+  +S            HS+  P D
Sbjct: 681  QNVIEEEEEALWAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPSATSSRSEHSTSSPLD 740

Query: 1014 SPQQQQPPSATLSADDPS---------------TSTPAVVSPPVPSSSAQSADTSASVVA 1058
            +     P ++T SA  PS               T+  AV  P VP    QS    A  V 
Sbjct: 741  TEVVPTPATSTTSASSPSSPTNLQFLPLSRAKPTTAQAVAPPAVPPPRRQSTRNKAPPVT 800

Query: 1059 AAPPVIVNTHPMQTRAKNGIVKPRLQPTLLLTHLEPTSVKQAMKDAKWYKAMQEEYTAL- 1117
                V+  T   ++ +K   +  +LQ                  D + + A    Y A+ 
Sbjct: 801  LKDFVVNTTVCQESPSKLNSILYQLQKR---------------DDTRRFSASHTTYVAID 845

Query: 1118 --MNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETF 1175
                N TWT+  LP  +  +G +W+Y++K N DGS+ +YKARLVA G  Q +G DY ETF
Sbjct: 846  AQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETF 905

Query: 1176 SPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDKNLVCKL 1235
            +PV K  TVRL L +A+ R W + Q+DV+NAFL+G L EEVYM  PPGFE    N VC+L
Sbjct: 906  APVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVCRL 965

Query: 1236 QKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGA 1295
            +KALYGLKQAPR WF +L   L R+GFQ S  D SLFT       I +L+YVDD+IITG 
Sbjct: 966  RKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIITGN 1025

Query: 1296 SMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDA 1355
            S    QQ    L S F +K LG L YFLG++V   + G + + Q KY  D++++  +L  
Sbjct: 1026 SQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTG-IYICQRKYALDIISETGLLGV 1084

Query: 1356 AAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHE 1415
               + P++   KL  +    L DP  YR +VG L Y  +TR +++F+V+ + +FM +P E
Sbjct: 1085 KPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPRE 1144

Query: 1416 EHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLG 1475
            +HW A  R++RYLK     G+ L+    +    +  +CD+DW  DP  RRS +G  V  G
Sbjct: 1145 DHWAAALRVVRYLKADPGQGVFLR---RSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFG 1201

Query: 1476 YNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFTIPTVY-CDNMST 1534
             + ISW  KKQ  V++SS EAEYR+++   +ELLW++ LL  L +    P +  CD+ S 
Sbjct: 1202 DSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSA 1261

Query: 1535 VLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLK 1594
            + +  NP+ H RTKH+E+D  FVR++     +  +HV +  Q ADIFTK L    F   +
Sbjct: 1262 IYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFSAFR 1321

Query: 1595 DKLNV 1599
             KL +
Sbjct: 1322 IKLGI 1326


>At1g60020 hypothetical protein
          Length = 1194

 Score =  614 bits (1584), Expect = e-175
 Identities = 381/993 (38%), Positives = 524/993 (52%), Gaps = 133/993 (13%)

Query: 463  TGMHPQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLP 522
            T   P+A  A    ++++   W  DSGATHH+T++      H P +  E + + +G GL 
Sbjct: 269  TPWQPRANAAIASPYNAN--NWLLDSGATHHITSDLNNLSLHQPYTGGEDVTIADGSGLS 326

Query: 523  IQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQ 582
            I   GSAL+ +   P+ SL L  +L VP+I KNL+SV R    N V   F   H  V   
Sbjct: 327  ISHTGSALIST---PSRSLALTDVLYVPNIHKNLISVYRMCNANKVSVEFFPAHFQVKDL 383

Query: 583  DTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQS 642
             T   LL G   D+    ++ P+    + P+ SS  ++              +P  DL S
Sbjct: 384  KTGVQLLQGRTKDE---LYEWPV----NPPKPSSHFTT-------------TTPKTDLTS 423

Query: 643  ATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNI 702
                                                  WHSRLGHP    LK  +S  ++
Sbjct: 424  --------------------------------------WHSRLGHPSLSTLKVVVSQFSL 445

Query: 703  SVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLESSCGFLYFLT 762
             V ++      C  C L+K H+LP  ++      P E ++ DLW  + + S   F Y+L 
Sbjct: 446  PVSNSLQKQFNCSDCLLNKTHKLPFHTNTITSTQPLEYLYIDLW-TSPIVSIDNFKYYLV 504

Query: 763  CVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKL 822
             VD  T+Y+W +P+K+KS     F+ F+A+V  +F  K+  + +D GGEF  L S     
Sbjct: 505  IVDHYTRYSWFYPIKQKSHVKDVFMTFKALVANKFQRKIIHLYSDNGGEFIALRSFLSSN 564

Query: 823  GIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFLAATYLINRMSTT 882
            GI H  T PHT   NG  ERKHRHIVETGL LL  ASMP  +W +AF  A YLINRMS+ 
Sbjct: 565  GITHLTTPPHTPEHNGISERKHRHIVETGLTLLGQASMPKSYWSYAFTIAIYLINRMSSD 624

Query: 883  TLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYK 942
             + G SPY +L+GQ P++  L+VFG  CFP+LRPY ++KL      CVF+GYS     Y 
Sbjct: 625  VIGGISPYKRLFGQAPNYLKLRVFGCLCFPWLRPYTTHKLDDRPAPCVFLGYSQTQSAYL 684

Query: 943  CLDQ-SGRIYISKDVLFHEHRFPY--PILFP-------TDHSSSSSAEFYPLSTIPII-- 990
            CL++ +GR+Y S+ V F E+ +P+  P L P        +HS +++    P   +P +  
Sbjct: 685  CLNRTTGRVYTSRHVQFVENTYPFTKPTLDPFTNLEESNNHSITTTVPSPPFVQLPSVPP 744

Query: 991  ----SHTAPP---------------SSPVLAASGHSS----------------------- 1008
                 H  PP               SSPV+ +S   S                       
Sbjct: 745  PTRDPHQPPPSQPAPSPSPLSPPSMSSPVMTSSPQFSSNRDSTTLHGDYSHVDYGLSSPS 804

Query: 1009 --PGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADT-----SASVVAAAP 1061
              PGP  SP   + PS   S+  PS S     +PP   SS+ S+ T     S     + P
Sbjct: 805  NPPGPITSPTTSKSPSEPTSS--PSHSNQPNKTPPNSPSSSSSSPTPIPSPSPQSSNSPP 862

Query: 1062 PVIVNTHPMQTRAKNGIVKPRLQPTLLLT----HLEPTSVKQAMKDAKWYKAMQEEYTAL 1117
            P   N H M+TRAKN I KP  + TL  T       PT+V +A++D  W  AM EE+ A 
Sbjct: 863  PPPQNQHSMRTRAKNNITKPIKKLTLAATPKGKSKIPTTVAEALRDPNWRNAMSEEFNAG 922

Query: 1118 MNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSP 1177
            + N T+ LVP   ++  VG +WI+ IK NPDGSIN+YKAR +AKG+ Q  G DYS TFSP
Sbjct: 923  LRNSTYDLVPPKPHQNFVGTRWIFTIKYNPDGSINRYKARFLAKGFHQQHGLDYSNTFSP 982

Query: 1178 VVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDK-NLVCKLQ 1236
            V+K  TV+ +L +A+SR W ++QLD+NNAFL G L E+VY+ QPPGF + D+ N VC L+
Sbjct: 983  VIKSTTVQTVLDIAVSRSWDIRQLDINNAFLQGRLTEDVYVAQPPGFINPDRPNYVCHLK 1042

Query: 1237 KALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGAS 1296
            KAL+GLKQAPRAW+  L+  L+  GF  S  + SLF    ++  IY+LVYVDD +ITG++
Sbjct: 1043 KALHGLKQAPRAWYQELRGFLLTCGFTNSVANTSLFIRQHNKDYIYILVYVDDFLITGSN 1102

Query: 1297 MSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAA 1356
             +LI Q    L + F+LK LGQL YFL ++ T    G L L Q +Y+ DLLTK  MLDA 
Sbjct: 1103 SNLIAQFITCLANRFSLKDLGQLSYFLEIEATRTKAG-LHLMQRRYVLDLLTKTKMLDAK 1161

Query: 1357 AISTPMQCGVKLSKNEGSALKDPTEYRSVVGAL 1389
             +STPM    KL+   G+ + +P  YR ++G+L
Sbjct: 1162 TVSTPMSPTPKLTLTSGTPIDNPGGYRQILGSL 1194



 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 55/216 (25%), Positives = 111/216 (50%), Gaps = 11/216 (5%)

Query: 10  MPSSSSSSSLSQAFSHKLSI---------KLDDSNFYSWKQQVEGVIRSHKLQKFVQDPP 60
           M S+ S S+ + AFS   ++         KL  +N+  W +QV  ++  + L  ++    
Sbjct: 1   MTSTPSGSTETIAFSETPTLLNVNMANITKLTPTNYIMWNRQVHALLDGYDLAGYIDGSV 60

Query: 61  MIPEKFLTEEDKITENVNPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEI 120
             P + +T         NP +  W++QD L+++ +L T++  I P + +   + ++WE++
Sbjct: 61  TAPSEMITTAG--VSAANPAYKFWKRQDKLIYSAILGTITTTIQPLLSRSNTAAEIWEKL 118

Query: 121 HSFFNAKSRAQSTQLRNELKNITKGTKTASEFLQRIKTIVNTLASIGEPVTFRDHLEAIF 180
            S +   S     Q+R  +K  +KGTKT +E+ Q   T  + LA +G+P+   + +E + 
Sbjct: 119 KSIYATPSWGHIQQMRQHIKQWSKGTKTITEYFQGHTTRFDELALLGKPLEHAEQIEFLL 178

Query: 181 DGLSEEYSALMTVIYNQTTYFTISEVEAMVISHEAR 216
            GLSE+Y +++     +    T++E+   +++ EA+
Sbjct: 179 GGLSEDYKSVVDQTEIRDKPPTLTELLEKLLNREAK 214


>At1g70010 hypothetical protein
          Length = 1315

 Score =  609 bits (1571), Expect = e-174
 Identities = 354/941 (37%), Positives = 522/941 (54%), Gaps = 41/941 (4%)

Query: 673  SGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSF-CKACCLSKLHRLPSSSSN 731
            + ++ +DLWH RLGHP    L+   SL  +S P  K+   F C+ C +SK   LP  S N
Sbjct: 399  ASVTSHDLWHKRLGHPSVQKLQPMSSL--LSFPKQKNNTDFHCRVCHISKQKHLPFVSHN 456

Query: 732  TVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFINFQA 791
               + PF+L+  D WGP S+++  G+ YFLT VD  ++ TWV+ L+ KSD       F  
Sbjct: 457  NKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVT 516

Query: 792  MVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETG 851
            MVE QF   +K V++D   E    T  +   GI+   +CP T  QN  VERKH+HI+   
Sbjct: 517  MVENQFETTIKGVRSDNAPELN-FTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVA 575

Query: 852  LALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACF 911
             +L   + +P+ +W    L A YLINR+    L+   P+  L    P +  +KVFG  C+
Sbjct: 576  RSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCY 635

Query: 912  PFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYPILFP 970
                P + +K S  +K C FIGY    KGYK LD ++  I +S+ V+FHE  FP+     
Sbjct: 636  ASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPF---LG 692

Query: 971  TDHSSSSSAEFYPLSTIPIISHTAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDP 1030
            +D S      F  L+  P +   +         S H +P    S  +  P +      +P
Sbjct: 693  SDLSQEEQNFFPDLNPTPPMQRQS---------SDHVNPSDSSSSVEILPSA------NP 737

Query: 1031 STSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPMQTR---AKNGIVKPRLQPTL 1087
            + + P     P   +S + A   A +       +V++ P + R   + + I  P L    
Sbjct: 738  TNNVPE----PSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLA 793

Query: 1088 LLTHL-EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKEN 1146
             L    EP++  +A K   W  AM  E+  L    TW +  LPA++  +GC+WI++IK N
Sbjct: 794  CLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYN 853

Query: 1147 PDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNA 1206
             DGS+ +YKARLVA+GY+Q +G DY+ETFSPV K  +V+L+L +A      L QLD++NA
Sbjct: 854  SDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNA 913

Query: 1207 FLNGVLEEEVYMVQPPGFEHKD-----KNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFG 1261
            FLNG L+EE+YM  P G+  +       N VC+L+K+LYGLKQA R W+ +    L+  G
Sbjct: 914  FLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLG 973

Query: 1262 FQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDY 1321
            F  S CD + F   S    + +LVY+DDIII   + + +  L +Q+ S F L+ LG+L Y
Sbjct: 974  FIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKY 1033

Query: 1322 FLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTE 1381
            FLG+++     G + ++Q KY  DLL +   L     S PM   +  + + G    +   
Sbjct: 1034 FLGLEIVRSDKG-IHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGP 1092

Query: 1382 YRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPC 1441
            YR ++G L Y  ITRP+I+FAVNK+ QF   P + H +AV +IL+Y+KGT+  G+     
Sbjct: 1093 YRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFY--- 1149

Query: 1442 SMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSL 1501
            S T  L L  Y +AD+ S  D RRSTSG C+FLG +LI W ++KQ +V++SS EAEYRSL
Sbjct: 1150 SATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSL 1209

Query: 1502 ANTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREK 1560
            +  T EL+W+ + L EL++P + PT ++CDN + + + +N + H RTKH+E D   VRE+
Sbjct: 1210 SVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRER 1269

Query: 1561 VQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNVVD 1601
            +      + H+ +E Q AD FTK L P+ F  L  K+ +++
Sbjct: 1270 LLKGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGLLN 1310



 Score = 54.3 bits (129), Expect = 6e-07
 Identities = 43/178 (24%), Positives = 90/178 (50%), Gaps = 16/178 (8%)

Query: 78  NPLFADWEQQDSLLFTWLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRN 137
           +P    W + +S++ +WLL+++S  I  +++    +  +W+++++ F+  S  +  +LR 
Sbjct: 25  DPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAIWKDLYTRFHKSSLPRLYKLRQ 84

Query: 138 ELKNITKGTKTASEFLQRIKTIVNTLASI-GEPVTFRDHL-----EAIFD---GLSEEYS 188
           ++ ++ +G    S +  R +T+   L S+   P T  D L       + D   GL++ Y 
Sbjct: 85  QIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPRTVEDLLIERETNRVIDFLMGLNDCYD 144

Query: 189 ALMTVIYNQTTYFTISEVEAMVISHEARFDRMRKKQLADT---TSAVFLAQAQNSPSS 243
            + + I  + T  ++SEV  M+   E +    R  +++ T   TS+VF    Q+S S+
Sbjct: 145 TVRSQILMKKTLPSLSEVFNMIDQDETQ----RSARISTTPGMTSSVFPVSNQSSQSA 198


>At4g14460 retrovirus-related like polyprotein
          Length = 1489

 Score =  594 bits (1531), Expect = e-169
 Identities = 463/1628 (28%), Positives = 716/1628 (43%), Gaps = 285/1628 (17%)

Query: 34   SNFYSWKQQVEGVIRSHKLQKFVQDPPMIPEKFLTEEDKITENVNPLFADWEQQDSLLFT 93
            S+F+SW++ +   +       F+      P +   +           F  W + + ++ T
Sbjct: 55   SDFHSWRRSILMALNVRNKLGFINGTITKPPEDHRD-----------FGAWSRCNDIVST 103

Query: 94   WLLSTLSPAILPNVIQCVHSYQVWEEIHSFFNAKSRAQSTQLRNELKNITKGTKTASEFL 153
            WL++++   I  +++       +W  + S F      +   +  +L  I +G+       
Sbjct: 104  WLMNSVDKKIGQSLLYIATVQGIWNNLLSRFKQDDAPRIFDIEQKLSKIEQGSMD----- 158

Query: 154  QRIKTIVNTLASIGEPVTFRDHLEAIFDGLSEEYSALMTVIYNQTTYFTISEVEAMVISH 213
              I T    L ++ E       L     G  E  +A+      Q      S V   +   
Sbjct: 159  --ISTYYTALLTLWEEHRNYVELPVCTCGRCECDAAVKWEHLQQR-----SRVTKFLKEL 211

Query: 214  EARFDRMRKKQLADTTSAVFLAQAQNSPSSSTAPAPPPPQAMWTQPAPAPSSTMAQPPAT 273
               FD+ R+  L                     P P   +A         +         
Sbjct: 212  NEGFDQTRRHILM------------------LKPIPTIKEAF--------NMVTQDERQR 245

Query: 274  SVAPSQPVDTAVDSGYGNRDEQNRNSGGYGRGRGRGR-GRNVQCTYCSKWGHDAASCWSR 332
            +V P   VD+     + N    N +   Y       R  +   CT+C K GH    C+  
Sbjct: 246  NVKPLTRVDSVA---FQNTSMINEDENAYVAAYNTVRPNQKPICTHCGKVGHTIQKCYK- 301

Query: 333  PSGVSSNANSSANSAQSGNSGSNFSVPGVNLGFSP-MQFGGFPSMANFGFPPYA----PY 387
                    +      ++GN+G  +  P   L   P M     P M  F   PY       
Sbjct: 302  -------VHGYPPGMKTGNTGYTYK-PNPQLHVQPRMPMMPQPRM-QFPAQPYTNSMQKA 352

Query: 388  NSMLPQYGSSVLSPSS----MPPWSPWCIPPTPY-SHATDMQGMQAAGMSFVRPWLPQGQ 442
            N +   Y  +   PS      P  +P+   P P+ +H  +   +Q      +   + Q Q
Sbjct: 353  NVVAQVYAETGAYPSEGYSQAPMMNPYGSYPMPHITHGGNNLSLQDFTPQQIEQMISQFQ 412

Query: 443  FPAPTAQTPQFPRPPQQQVSTGMHPQAMLATVPAHH-----SSPVTWCPDSGATHHVTNN 497
                 AQ  Q P P     ++  +P   LATV  H      S+  T  P    +    NN
Sbjct: 413  -----AQV-QVPEP----AASSSNPSP-LATVSEHGFMALTSTSGTIIPFPSTSLKYENN 461

Query: 498  PGIFVDHVPSSSQEQL-----LVGNGQGLPIQSIGSAL-----LPSSFNPTASLILKKLL 547
               F +H  S+ Q+ L     ++ +G    + S  +       +  + + T  LIL  +L
Sbjct: 462  DLKFQNHTLSALQKFLPSDAWIIDSGASSHVCSDLAMFRELKSVSGTVHITQKLILHNVL 521

Query: 548  LVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDGPLTK 607
             VP    NL+SVS   +  +    F+ + C +      EL     +G   LY+    L  
Sbjct: 522  HVPDFKFNLMSVSSLVKTISCSAHFYVDCCLIQ-----ELSQGLMIGRGRLYHNLYILET 576

Query: 608  ASSQPQSSSPLSSIQACLASKSAANKASPAIDLQSATVSPIVPCNNADSVNVSSTVSDLV 667
             ++ P +S+P     ACL +                                        
Sbjct: 577  ENTSPSTSTPA----ACLFT---------------------------------------- 592

Query: 668  SCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPS 727
                GS ++   LWH RLGHP   VL+                          KL RL  
Sbjct: 593  ----GSVLNDGHLWHQRLGHPSSVVLQ--------------------------KLKRLAY 622

Query: 728  SSSNTVYNTPFELVFADLWGPASLESSCGFLYFLTCVDACTKYTWVFPLKKKSDTCATFI 787
             S N + + PF+LV  D+WGP S+ES  GF YFLT VD CT+ TWV+ L+ K D  + F 
Sbjct: 623  ISHNNLASNPFDLVHLDIWGPFSIESIEGFRYFLTVVDDCTRTTWVYMLRNKKDVSSVFP 682

Query: 788  NFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHI 847
             F  +V  QF  K+K++++D   E    T   ++ G++H  +C +T  QN  VERKH+HI
Sbjct: 683  EFIKLVSTQFNAKIKAIRSDNAPELG-FTEIVKEHGMLHHFSCAYTPQQNSVVERKHQHI 741

Query: 848  VETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFG 907
            +    ALL  +++P+Q+W      A +LINR+ +  L   SPY  +  + PD+  LK FG
Sbjct: 742  LNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSPLLNNKSPYELILNKQPDYSLLKNFG 801

Query: 908  SACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYP 966
              CF     +   K +  ++ CVF+GY   +KGYK LD +S  + +S++V+F EH FP  
Sbjct: 802  CLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYKVLDLESHSVTVSRNVVFKEHVFP-- 859

Query: 967  ILFPTDHSSSSSAEFYPLS------------TIPIISHTA--PPSSPVLAASGHSSPGPQ 1012
              F T    + + + +P S            T+P+I   +  P ++    A  H+S    
Sbjct: 860  --FKTSELLNKAVDMFPNSILPLPAPLHFVETMPLIDEDSLIPTTTDSRTADNHASSSSS 917

Query: 1013 DSPQQQQPPSATLSADDPSTSTPAV----------------------VSPPVPSSSAQSA 1050
              P    P S T + D  S + P                        +S   P+ S+   
Sbjct: 918  ALPSIIPPSSNTETQDIDSNAVPITRSKRTTRAPSYLSEYHCSLVPSISTLPPTDSSIPI 977

Query: 1051 DTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRLQPTLLL--THLEPTSVKQAMKDAKWYK 1108
                 +  A+ P     +P+ T        P  Q  +    T  EP +  QAMK  KW +
Sbjct: 978  HPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIFAYNTETEPKTFSQAMKSEKWIR 1037

Query: 1109 AMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQG 1168
               EE  A+  N TW++  LP ++  VGCKW++ IK NPDG++ +YKARLVA+G++Q +G
Sbjct: 1038 VAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYNPDGTVERYKARLVAQGFTQQEG 1097

Query: 1169 FDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHK- 1227
             D+ +TFSPV K  + +++L LA   GW L Q+DV++AFL+G L+EE++M  P G+    
Sbjct: 1098 IDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDAFLHGDLDEEIFMSLPQGYTPPA 1157

Query: 1228 ----DKNLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYM 1283
                  N VC+L K++YGLKQA R W+ R                            +  
Sbjct: 1158 GTILPPNPVCRLLKSIYGLKQASRQWYKRF---------------------------VAA 1190

Query: 1284 LVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVTHLSNGNLLLNQTKYI 1343
            LVY+DDI+I   + + ++ L A L S F +K LG   +FLG                   
Sbjct: 1191 LVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARFFLG------------------- 1231

Query: 1344 SDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAV 1403
                    +L     S PM   + L ++ G+ L +PT YR ++G L Y TITRP+I++AV
Sbjct: 1232 --------LLGCKPSSIPMDPTLHLVRDMGTPLPNPTAYRKLIGRLLYLTITRPDITYAV 1283

Query: 1404 NKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDD 1463
            +++ QF++ P + H +A  ++LRY+K     G++    S    + L  + DADW +  D 
Sbjct: 1284 HQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMY---SADYEICLNGFSDADWAACKDT 1340

Query: 1464 RRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPFT 1523
            RRS SG C++LG +LISW +KKQ++ +RSSTE+EYRS+A  T E++W+Q LL +L IP T
Sbjct: 1341 RRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCEIIWLQQLLKDLHIPLT 1400

Query: 1524 IPT-VYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFT 1582
             P  ++CDN S +  + NP+ H RTKH+E+D   VR++++  +L   HVP+E+Q ADI T
Sbjct: 1401 CPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNLKALHVPTENQHADILT 1460

Query: 1583 KALSPTRF 1590
            KAL P  F
Sbjct: 1461 KALHPGPF 1468


>At4g27200 putative protein
          Length = 819

 Score =  510 bits (1314), Expect = e-144
 Identities = 298/723 (41%), Positives = 407/723 (56%), Gaps = 49/723 (6%)

Query: 907  GSACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCL-DQSGRIYISKDVLFHEHRFPY 965
            GSACFP LR Y  NK +  S +CVF+GY+  +KGY+CL   +GR+YIS+ V+F E  +P+
Sbjct: 15   GSACFPTLRDYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPF 74

Query: 966  -------------PILF--------PTDHSSSSSAEFYPLST---IPIISHTAPPSSPVL 1001
                         P+L         P   +S+S +   PL T    P +     P  P L
Sbjct: 75   SHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPSSRSPLFTSADFPPLPQRKTPLLPTL 134

Query: 1002 AASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAP 1061
                  S     + QQ     +  + D  S S           S ++     ASV     
Sbjct: 135  VPISSVSHASNITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSDSEETIQQASVNVHQT 194

Query: 1062 PVIVNTHPMQTRAKNGIVKPRLQPTLL---LTHLEPTSVKQAMKDAKWYKAMQEEYTALM 1118
            P   N HPM TRAK GI KP  +   L   +++ EP +V  A+K   W  AM EE     
Sbjct: 195  PASTNVHPMVTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCS 254

Query: 1119 NNGTWTLVPLPANRTPVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPV 1178
               TW+LVP  ++   +G KW++R K + DG++NK KAR+VAKG+ Q +G DY ET+SPV
Sbjct: 255  ETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLETYSPV 314

Query: 1179 VKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDKNLVCKLQKA 1238
            V+  TVRL+L LA +  W ++Q+DV NAFL+G L+E VYM QP      +++ VC L K+
Sbjct: 315  VRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAA----NRDHVCLLHKS 370

Query: 1239 LYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMS 1298
            +YGLKQ+PRAWF +    L+ FGF   K DPSLF Y  +   I +L+             
Sbjct: 371  IYGLKQSPRAWFDKFSTFLLEFGFFCRKSDPSLFIYAHNNNLILLLL-----------SQ 419

Query: 1299 LIQQLTAQLHSIFALKQLGQLDY-FLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAA 1357
             +  L A L+  F +  +GQ    FLG+QV    NG L ++Q KY  DLL   +M     
Sbjct: 420  TLTSLLAALNKEFRMTDMGQHSLTFLGIQVQRQQNG-LFMSQQKYAEDLLIAASMEHCTP 478

Query: 1358 ISTPMQCGVKLSKNEGSALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEH 1417
            + TP+   +    ++     DPT +RS+ G LQY T+TRP+I FAVN VCQ M QP    
Sbjct: 479  LPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQKMHQPTISD 538

Query: 1418 WKAVKRILRYLKGTLTHGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYN 1477
            +  +KRILRY+KGT+T GI     S   P  L AY D+DWG+    RRS  G C F+G N
Sbjct: 539  FHLLKRILRYIKGTITMGI---SYSRDSPTLLQAYSDSDWGNCKQTRRSVGGLCTFMGTN 595

Query: 1478 LISWTAKKQSLVARSSTEAEYRSLANTTAELLWVQSLLTELKIPF-TIPTVYCDNMSTVL 1536
            L+SW++KK   V+RSSTEAEY+SL++  +E+LW+ +LL EL+IP    P ++CDN+S V 
Sbjct: 596  LVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSAVY 655

Query: 1537 LTHNPILHTRTKHMEMDIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRFLLLKDK 1596
            LT NP  H RTKH ++D  FVRE+V  K+L+V+H+P   Q ADIFTK+L    F+ L+ K
Sbjct: 656  LTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQIADIFTKSLPYEAFIHLRGK 715

Query: 1597 LNV 1599
            L V
Sbjct: 716  LGV 718


>At3g45520 copia-like polyprotein
          Length = 1363

 Score =  463 bits (1192), Expect = e-130
 Identities = 351/1175 (29%), Positives = 552/1175 (46%), Gaps = 147/1175 (12%)

Query: 462  STGMHPQAMLATVPAHHSSPVTWCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGL 521
            S GM     L++   H      W  D+G  +H+T+    +++     +   + +GN    
Sbjct: 296  SAGMFVSEALSSTDIHLEDE--WIMDTGCIYHMTHKRE-WLEDFDEEAGGSVRMGNKSIS 352

Query: 522  PIQSIGSALLPSSFNPTASLILKKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHH 581
             ++ +G+  + +    T +L  + +  +P + +NL+S+  F +  +    F + +  +  
Sbjct: 353  RVKGVGTVRIVNDNGLTVTL--QNVRYIPDMDRNLLSLGTFEKAGH---KFESENGMLRI 407

Query: 582  QDTYELLLTGTVGDDGLYYFDGPLTKASSQPQSSSPLSSIQACLASKSAANKASPAIDLQ 641
            +   ++LL G   D  LY   G                                PA D  
Sbjct: 408  KSGNQVLLEGRRYDT-LYILHG-------------------------------KPATD-- 433

Query: 642  SATVSPIVPCNNADSVNVSSTVSDLVSCNSGSGISVYDLWHSRLGHPHHDVLKQTLSLCN 701
                         +S+ V+    D V            LWH RL H         +S  N
Sbjct: 434  -------------ESLAVARANDDTV------------LWHRRLCH---------MSQKN 459

Query: 702  ISVPSNK--------SVFSFCKACCLSKLHRLPSSSSNTVYNTPFELVFADLWGPASLES 753
            +S+   K        S+   C+ C   +  ++  + +        E V +DLWG  ++  
Sbjct: 460  MSLLIKKGFLDKKKVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPM 519

Query: 754  SCGFL-YFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEF 812
            S G   YF++ +D  T+  WV+ LK K +    F+++ ++VE Q G ++K+++TD G EF
Sbjct: 520  SLGNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEF 579

Query: 813  --KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLSHASMPLQFWDHAFL 870
              +      ++ G     TC +T  QNG VER +R I+E   ++L  + +P +FW  A  
Sbjct: 580  CNRMFDGFCEEKGFQRHRTCAYTPQQNGVVERMNRTIMEKVRSMLCDSGLPKRFWAEATH 639

Query: 871  AATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRPYNSNKLSLHSKECV 930
             A  LIN+   + +    P  +  G+ P +  L+ +G  C  F+   +  KL+L +K+ V
Sbjct: 640  TAVLLINKTPCSAINFEFPDKRWSGKAPIYSYLRRYG--CVTFVHT-DGGKLNLRAKKGV 696

Query: 931  FIGYSINHKGYKC-LDQSGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIPI 989
             IGY    KGYK  L +  +  +S++V F E+   Y  L       S   + +  S I +
Sbjct: 697  LIGYPSGVKGYKVWLIEEKKCVVSRNVSFQENAV-YKDLMQRKEQVSCEEDDHAGSYIDL 755

Query: 990  ISHTAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTSTPAVVSPPVPSSSAQS 1049
                       L A   +S G + S  Q  P  AT  A    TSTP    P   +   + 
Sbjct: 756  D----------LEADKDNSSGGEQSQAQVTP--ATRGA---VTSTP----PRYETDDIEE 796

Query: 1050 ADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPR-----------LQPTLLLTHLEPTSVK 1098
             D   S ++         H ++ R +  I  PR           L  T     +EP   K
Sbjct: 797  TDVHQSPLSY--------HLVRDRERREIRAPRRFDDEDYYAEALYTTEDGDAVEPADYK 848

Query: 1099 QAMKDAKWYK---AMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKEN-PDGSINKY 1154
            +A++D  W K   AM EE  + + N TWT V  P  +  +G +WIY+ K+  P     ++
Sbjct: 849  EAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSRWIYKYKQGIPGVEEPRF 908

Query: 1155 KARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFLNGVLEE 1214
            KARLVAKGY+Q +G DY E F+PVVK +++R++LS+       L+QLDV  AFL+G L+E
Sbjct: 909  KARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLELEQLDVKTAFLHGELKE 968

Query: 1215 EVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKCDPSLFT 1273
            ++YM+ P G E   K N VC L K+LYGLKQAPR W  +    +   GF+ S  D   +T
Sbjct: 969  KIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYMTEIGFKRSDYDSCAYT 1028

Query: 1274 Y-YSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQVT-HLS 1331
               S    +Y+L YVDD+++   +M  I  L  +L   F +K LG     LG+++     
Sbjct: 1029 KKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAKKILGIEIIIDRE 1088

Query: 1332 NGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGSALKDPTEYR------SV 1385
             G L L+Q  Y++ +L   NML++    TP+   +K+       L    EY       S 
Sbjct: 1089 AGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEEKLSTEEEYMNSVPYSSA 1148

Query: 1386 VGALQYATI-TRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILLQPCSMT 1444
            VG++ YA I TRP++++ V  V +FM+QP +EHW  VK +LRY+KGT+   +  +  S  
Sbjct: 1149 VGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIKGTVDTRLCYKRNS-- 1206

Query: 1445 RPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEYRSLANT 1504
                +  YCDAD+ +D D RRS +G    LG N ISW +  Q +VA+SSTE EY SL   
Sbjct: 1207 -DFSICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECEYMSLTEA 1265

Query: 1505 TAELLWVQSLLTELKIPFTIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVREKVQDK 1564
              E +W++ LL +         ++CD+ S + L+ N + H RTKH+++   F+RE + D 
Sbjct: 1266 VKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDVKFHFIREIIADG 1325

Query: 1565 SLLVQHVPSEHQKADIFTKALSPTRFLLLKDKLNV 1599
             + V  + +E   ADIFTK L   +F    D L V
Sbjct: 1326 KVEVSKISTEKNPADIFTKVLPVNKFQTALDFLRV 1360


>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  462 bits (1190), Expect = e-130
 Identities = 271/696 (38%), Positives = 387/696 (54%), Gaps = 48/696 (6%)

Query: 934  YSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYPILFPTDHSSSSSAEFYPLSTIPIIS- 991
            Y   +KGYK LD +S  I I+++V+FHE +FP    F T      S + +P S +P+ + 
Sbjct: 335  YPSGYKGYKVLDLESHSISITRNVVFHETKFP----FKTSKFLKESVDMFPNSILPLPAP 390

Query: 992  ----HTAPPSSPVLAASGHSSPGPQDSPQQQQPP------------------SATLSADD 1029
                 + P    + A   ++S     S     PP                  S  ++   
Sbjct: 391  LHFVESMPLDDDLRADDNNASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPK 450

Query: 1030 PSTSTPAVVSP----PVPSSSAQSADTSASVVAAA----PPVIVNTHPMQTRAKNGIVKP 1081
             +   PA +S      VP  S+ S  TS S+   +    P  I   +PM T      + P
Sbjct: 451  RNAKAPAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTP 510

Query: 1082 RLQPTLLLTHLE--PTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKW 1139
                 +   ++E  P +  QAMK  KW +A  EE  AL  N TW +  L   +  VGCKW
Sbjct: 511  LFHSYICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKW 570

Query: 1140 IYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQ 1199
            ++ IK NPDGSI +YKARLVA+G++Q +G DY ETFSPV K  +V+L+L LA + GW L 
Sbjct: 571  VFTIKYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLT 630

Query: 1200 QLDVNNAFLNGVLEEEVYMVQPPGFE-----HKDKNLVCKLQKALYGLKQAPRAWFHRLK 1254
            Q+DV+NAFL+G L+EE+YM  P G+            VC+L K+LYGLKQA R W+ RL 
Sbjct: 631  QMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLS 690

Query: 1255 EVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFALK 1314
             V +   F  S  D ++F   S    I +LVYVDD++I     S ++ L   L S F +K
Sbjct: 691  SVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIK 750

Query: 1315 QLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEGS 1374
             LG   +FLG+++   S G + + Q KY  +LL  V +      S PM   + L+K  G+
Sbjct: 751  DLGPARFFLGLEIARSSEG-ISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGT 809

Query: 1375 ALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTH 1434
             L + T YR +VG L Y  ITRP+I+FAV+ + QF++ P + H +A  ++LRYLKG    
Sbjct: 810  LLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQ 869

Query: 1435 GILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSST 1494
            G++    S +  L L  + DADWG+  D RRS +G C++LG +LI+W +KKQS+V+RSST
Sbjct: 870  GLMY---SASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSST 926

Query: 1495 EAEYRSLANTTAELLWVQSLLTELKIPFTIPT-VYCDNMSTVLLTHNPILHTRTKHMEMD 1553
            E+EYRSLA  T E++W+Q LL +L +  T P  ++CDN S + L  NP+ H RTKH+E+D
Sbjct: 927  ESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEID 986

Query: 1554 IFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTR 1589
               VR++++   L   HVP+ +Q ADI TK L P +
Sbjct: 987  CHTVRDQIKAGKLKTLHVPTGNQLADILTKPLHPVQ 1022



 Score = 67.4 bits (163), Expect = 6e-11
 Identities = 33/85 (38%), Positives = 51/85 (59%), Gaps = 1/85 (1%)

Query: 758 LYFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFGHKLKSVQTDGGGEFKPLTS 817
           LYFLT VD CT+ TWV+ +K KS+    F  F  ++  Q+  K+K++++D   E    T 
Sbjct: 251 LYFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKEL-AFTK 309

Query: 818 HFQKLGIIHRLTCPHTHHQNGSVER 842
             ++ G+IH+ +C +T  QN  VER
Sbjct: 310 FVKEQGMIHQFSCAYTPQQNSVVER 334



 Score = 40.0 bits (92), Expect = 0.011
 Identities = 40/140 (28%), Positives = 65/140 (45%), Gaps = 9/140 (6%)

Query: 484 WCPDSGATHHVTNNPGIFVDHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
           W  DSGA+ HV ++  +F + +  S     L  NG  + I   G+  +      T++LIL
Sbjct: 99  WIIDSGASSHVCSDLTMFRELIHVSGVTVTLP-NGTRVAITHTGTICI------TSTLIL 151

Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDG 603
             +LLVP    NL+SV    +  +    F A+ C +  + T  L++      + LY  + 
Sbjct: 152 HNVLLVPDFKFNLISVCCLVKTLSYSAHFFADCCYI-QELTRGLMIGRGKTYNNLYILET 210

Query: 604 PLTKAS-SQPQSSSPLSSIQ 622
             T  S S P +SS   ++Q
Sbjct: 211 QRTSFSPSLPAASSFTGTVQ 230


>At2g06840 putative retroelement pol polyprotein
          Length = 1102

 Score =  452 bits (1162), Expect = e-127
 Identities = 281/818 (34%), Positives = 406/818 (49%), Gaps = 103/818 (12%)

Query: 788  NFQAMVELQFGHKLKSVQTDGGGEFKPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHI 847
            NF AM + QF   ++S+++D G EF   TS+FQ+ GI+H  +C  T  QN  VERKHRHI
Sbjct: 357  NFCAMADRQFRKPVRSIRSDNGTEFMCHTSYFQEHGILHETSCVDTPQQNARVERKHRHI 416

Query: 848  VETGLALLSHASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFG 907
            +      L   + P                   +  L+G +PY  L+G+ P +  L+ FG
Sbjct: 417  LNVARTCLFQGNFPTP-----------------SPVLKGKTPYEVLFGKQPSYDMLRTFG 459

Query: 908  SACFPFLRPYNSNKLSLHSKECVFIGYSINHKGYKCLDQSGRIYISKDVLFHEHRFPYPI 967
              C+  +RP + +K +  S++C+FIGY                             P+  
Sbjct: 460  CLCYAHIRPRDKDKFASRSRKCIFIGY-----------------------------PHET 490

Query: 968  LFPTDHSSSSSAEFYPLSTIPIISHTAPPSSPVLAASGHSSPGPQDSPQ----QQQPPSA 1023
              P  H S       P ST    ++T P      A   HS P    SP     +    S 
Sbjct: 491  ATPNTHDSID-----PTSTSSDENNTPPEPVTPQAEQPHS-PSSISSPHIVHNKGSVHSR 544

Query: 1024 TLSADDPSTSTPAVVSPPVPSSSAQSADTSASVVAAAPPVIVNTHPMQTRAKNGIVKPRL 1083
             L+ D  S+S      P +P    +        V     V    H     +  G+    +
Sbjct: 545  HLNEDHDSSS------PGLPELLGKGHRPKHPPVYLKDYVAHKVHSSPHTSSPGLSDSNV 598

Query: 1084 QPTLLLTHL----------EPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRT 1133
             PT+   H+          E    K  +   +W  AMQ+E  AL  N TW +  LP  + 
Sbjct: 599  SPTVSANHIAFMAAILDSNEQNHFKDDVLIKEWCDAMQKEIEALEANHTWDVTDLPHGKK 658

Query: 1134 PVGCKWIYRIKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAIS 1193
             +  KW+Y++K N DG++ ++KARLV  G  Q +G D+ ETF+PV K  TVRL+L++A +
Sbjct: 659  AISSKWVYKLKFNSDGTLERHKARLVVMGNHQKEGIDFKETFAPVAKMTTVRLLLAVAAA 718

Query: 1194 RGWPLQQLDVNNAFLNGVLEEEVYMVQPPGFEHKDKNLVCKLQKALYGLKQAPRAWFHRL 1253
            + W + Q+DV+NAFL+G LE+E                      +LYGLKQAPR WF +L
Sbjct: 719  KDWDVFQMDVHNAFLHGDLEQE----------------------SLYGLKQAPRCWFAKL 756

Query: 1254 KEVLIRFGFQASKCDPSLFTYYSSQGCIYMLVYVDDIIITGASMSLIQQLTAQLHSIFAL 1313
               L + GF  S  D SLF+       I+ LVYVDD II G ++  I      LH  F +
Sbjct: 757  STALRKLGFTQSYEDYSLFSLNRDGTVIHFLVYVDDFIIVGNNLKAIDHFKEHLHKCFHM 816

Query: 1314 KQLGQLDYFLGVQVTHLSNGNLLLNQTKYISDLLTKVNMLDAAAISTPMQCGVKLSKNEG 1373
            K LG+L YFLG++V+  ++G   L+Q KY  D++ +  +L     + PM+   KL     
Sbjct: 817  KDLGKLKYFLGLEVSRGADG-FCLSQQKYALDIINEAGLLGYKPSAVPMELHHKLGSISS 875

Query: 1374 SALKDPTEYRSVVGALQYATITRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLT 1433
                +P +YR +V    Y TITRP++S+AV+ + QFM  P E HW A  R++RYLKG+  
Sbjct: 876  PVFDNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTPLEAHWHATLRLVRYLKGSPD 935

Query: 1434 HGILLQPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSS 1493
             GILL+     R L L AYCD+D+   P  RRS S   ++LG   ISW  KKQ  V+ SS
Sbjct: 936  QGILLR---SDRALSLTAYCDSDYNPCPRTRRSLSAYVLYLGDTPISWKTKKQDTVSSSS 992

Query: 1494 TEAEYRSLANTTAELLWVQSLLTELKIPFTIP-TVYCDNMSTVLLTHNPILHTRTKHMEM 1552
             EAEYR++A T  E+ W+++L+T L +  T P  ++CD+ + + +  NP+ H RTKH+E 
Sbjct: 993  AEAEYRAMAYTLKEIKWLKALMTTLGVDHTQPILLFCDSQAAIHIAANPVFHERTKHIEK 1052

Query: 1553 DIFFVREKVQDKSLLVQHVPSEHQKADIFTKALSPTRF 1590
            D   VR+ V DK +   H+ +     D+ TKAL    F
Sbjct: 1053 DCHQVRDAVTDKVISTPHIST----TDLLTKALPRPTF 1086



 Score = 36.2 bits (82), Expect = 0.16
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 28/136 (20%)

Query: 487 DSGATHHVTNNPGIFV---DHVPSSSQEQLLVGNGQGLPIQSIGSALLPSSFNPTASLIL 543
           DSGA+HH+T +  I V   D +PS+  +     +G+        + LL SS+       L
Sbjct: 196 DSGASHHMTGDCSILVDVFDIIPSAVTKP----DGKASCATKCVTLLLSSSYK------L 245

Query: 544 KKLLLVPSITKNLVSVSRFARDNNVFFSFHANHCSVHHQDTYELLLTGTVGDDGLYYFDG 603
           + +L VP     L+SVS+  +    F              +  L+  G V  + +YYF G
Sbjct: 246 QDVLFVPDFDCTLISVSKLLKQTGPF--------------SRTLIGAGEV-RERVYYFTG 290

Query: 604 PLTKASSQPQSSSPLS 619
            L  ++ +  S S  S
Sbjct: 291 VLVASAHKTSSDSTSS 306


>At2g21460 putative retroelement pol polyprotein
          Length = 1333

 Score =  435 bits (1119), Expect = e-122
 Identities = 289/932 (31%), Positives = 469/932 (50%), Gaps = 49/932 (5%)

Query: 680  LWHSRLGHPHHDVLKQTLSLCNISVPSNKSVFSFCKACCLSKLHRLPSSSSNTVYNTPFE 739
            LWH RLGH     +   L    +      S    C+ C   K  R+  + +        E
Sbjct: 418  LWHRRLGHMSQKNMDLLLKK-GLLDKKKVSKLETCEDCIYGKAKRIGFNLAQHDTREKLE 476

Query: 740  LVFADLWGPASLESSCGFL-YFLTCVDACTKYTWVFPLKKKSDTCATFINFQAMVELQFG 798
             V +DLWG  S+  S G   YF++ +D  T+   ++ LK K +    F+ +  +VE Q  
Sbjct: 477  YVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQTD 536

Query: 799  HKLKSVQTDGGGEF--KPLTSHFQKLGIIHRLTCPHTHHQNGSVERKHRHIVETGLALLS 856
             ++K+++TD G EF  +       + GI+   TC +T  QNG  ER +R ++E   ++LS
Sbjct: 537  KRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLS 596

Query: 857  HASMPLQFWDHAFLAATYLINRMSTTTLQGASPYFKLYGQYPDFKSLKVFGSACFPFLRP 916
             + +P +FW  A      LIN+  ++ L    P  +  G+ P +  L+ FG  C  F+  
Sbjct: 597  DSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYSYLRRFG--CIAFVHT 654

Query: 917  YNSNKLSLHSKECVFIGYSINHKGYKC-LDQSGRIYISKDVLFHEHRFPYPILFPTDHSS 975
             +  KL+  +K+ + +GY I  KGYK  L +  +  +S++V+F E+   Y  +  +  + 
Sbjct: 655  -DDGKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSRNVIFQENA-SYKDMMQSKDAE 712

Query: 976  SSSAEFYPLSTIPI-ISHTAPPSSPVLAASGHSSPGPQDSPQQQQPPSATLSADDPSTST 1034
                E  P S + + + H       V+ + G        SP    P +    ++  ++ T
Sbjct: 713  KDENEAPPSSYLDLDLDH-----EEVITSGGDDPIVEAQSPFNPSPATTQTYSEGVNSET 767

Query: 1035 PAVVSPPVPSSSAQSADTSASVVAAAPPVIVN-----THPMQTRAKNGIVKPRLQPTLLL 1089
              + SP    S     D     + A  PV  +        + T   +G ++P        
Sbjct: 768  DIIQSP---LSYQLVRDRDRRTIRA--PVRFDDEDYLAEALYTTEDSGEIEPA------- 815

Query: 1090 THLEPTSVKQAMKDAKWYKAMQEEYTALMNNGTWTLVPLPANRTPVGCKWIYRIKEN-PD 1148
               + +  K++M   KW  AM EE  + + N TWT+V  P ++  +G +WIY+ K   P 
Sbjct: 816  ---DYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGIPG 872

Query: 1149 GSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQLDVNNAFL 1208
                ++KARLVAKGY+Q +G DY E F+PVVK +++R+++S+       L+QLDV  AFL
Sbjct: 873  VEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAFL 932

Query: 1209 NGVLEEEVYMVQPPGFEHKDK-NLVCKLQKALYGLKQAPRAWFHRLKEVLIRFGFQASKC 1267
            +G L+E++YMV P G+E   K + VC L K+LYGLKQAP+ W  +    +   GF  S  
Sbjct: 933  HGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLY 992

Query: 1268 DPSLFTYYSSQGC-IYMLVYVDDIIITGASMSLIQQLTAQLHSIFALKQLGQLDYFLGVQ 1326
            D   +    S G  +Y+L+YVDD+++   +   I QL  +L   F +K LG     LG++
Sbjct: 993  DSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGME 1052

Query: 1327 VTHLSNGNLL-LNQTKYISDLLTKVNMLDAAAISTPMQCGVKL------SKNEGSALKDP 1379
            +      N L L+Q  Y++ +L   NM ++  + TP+   +K+       + +       
Sbjct: 1053 IIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDEDYMKS 1112

Query: 1380 TEYRSVVGALQYATI-TRPEISFAVNKVCQFMAQPHEEHWKAVKRILRYLKGTLTHGILL 1438
              Y S VG++ YA I TRP++++ V  + ++M+QP  EHW  VK +LRY+KG+L  G  L
Sbjct: 1113 IPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSL--GTKL 1170

Query: 1439 QPCSMTRPLPLIAYCDADWGSDPDDRRSTSGSCVFLGYNLISWTAKKQSLVARSSTEAEY 1498
            Q    +    ++ YCDAD  +  D RRS +G    LG + ISW + +Q +VA S+TEAEY
Sbjct: 1171 Q-YKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEY 1229

Query: 1499 RSLANTTAELLWVQSLLTELKIPFTIPTVYCDNMSTVLLTHNPILHTRTKHMEMDIFFVR 1558
             SL     E +W++ LL E         ++CD+ S + L+ N + H RTKH+++   ++R
Sbjct: 1230 MSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIR 1289

Query: 1559 EKVQDKSLLVQHVPSEHQKADIFTKALSPTRF 1590
            + + +    V  + +E   ADIFTK +   +F
Sbjct: 1290 DIIANGDGDVVKIDTEKNPADIFTKIVPVNKF 1321


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,800,746
Number of Sequences: 26719
Number of extensions: 1760285
Number of successful extensions: 14023
Number of sequences better than 10.0: 360
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 8613
Number of HSP's gapped (non-prelim): 3233
length of query: 1611
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1498
effective length of database: 8,299,349
effective search space: 12432424802
effective search space used: 12432424802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)