BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0318.14
(58 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57690 predicted GPI-anchored protein 68 8e-13
At3g20865 unknown protein 42 6e-05
At4g26320 arabinogalactan-protein AGP13 33 0.021
At5g11740 arabinogalactan-protein AGP15 32 0.078
At5g56540 arabinogalactan-protein AGP14 30 0.17
At5g40730 arabinogalactan-protein AGP24 30 0.23
At1g55330 arabinogalactan-protein AGP21 29 0.39
At4g30590 predicted GPI-anchored protein 29 0.51
At3g13520 arabinogalactan-protein AGP12 28 1.1
At1g03870 predicted GPI-anchored protein 28 1.1
At5g49130 unknown protein 27 1.5
At4g08670 lipid transfer protein - like predicted GPI-anchored p... 27 1.5
At1g56120 receptor-like protein kinase, putative 27 2.5
At1g17370 oligouridylate binding protein, putative 26 3.3
At2g31850 hypothetical protein 26 4.3
At2g13800 receptor-like protein kinase 26 4.3
At3g14100 oligouridylate binding protein, putative 25 5.6
At2g45160 putative SCARECROW gene regulator 25 5.6
At2g26890 unknown protein 25 5.6
At3g55230 disease resistance response/ dirigent - like protein 25 7.3
>At3g57690 predicted GPI-anchored protein
Length = 61
Score = 68.2 bits (165), Expect = 8e-13
Identities = 35/59 (59%), Positives = 45/59 (75%), Gaps = 2/59 (3%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATV--VGSLVGASVLSFFALF 57
M+MKK+ C VL AASM+A +A EV APAPGPAS ASA + +GSLVGAS++S F+ +
Sbjct: 1 MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 59
>At3g20865 unknown protein
Length = 62
Score = 42.0 bits (97), Expect = 6e-05
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 1 MDMKKVTCVVLIVAASMSA-ALATNEVPAPAPGPASGASAT--VVGSLVGASVLSFFAL 56
M+MK + + I A +S+ + AT E PAP+PG +S ++ VVGS+V AS+ +F AL
Sbjct: 1 MEMKNIFVALFISAVLVSSVSAATMESPAPSPGASSASTVAFPVVGSIVAASLSAFLAL 59
>At4g26320 arabinogalactan-protein AGP13
Length = 59
Score = 33.5 bits (75), Expect = 0.021
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 10 VLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALF 57
VL+ A + SA V APAP P S AS + + L+F LF
Sbjct: 12 VLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGFLF 59
>At5g11740 arabinogalactan-protein AGP15
Length = 61
Score = 31.6 bits (70), Expect = 0.078
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFAL 56
M + K + VVL++ A A +E PAP+ P SG+SA + S V A V + AL
Sbjct: 1 MAISKASIVVLMMVIISVVASAQSEAPAPS--PTSGSSA-ISASFVSAGVAAVAAL 53
>At5g56540 arabinogalactan-protein AGP14
Length = 60
Score = 30.4 bits (67), Expect = 0.17
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALF 57
M MK V++ V A + V APAP P S AS+ + +V++F F
Sbjct: 4 MKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFFF 60
>At5g40730 arabinogalactan-protein AGP24
Length = 69
Score = 30.0 bits (66), Expect = 0.23
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 6 VTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFAL 56
V C++ +A + + PAPAPGPAS S+TVV + +VL+ A+
Sbjct: 13 VVCLLATMAVVSAHEGHHHHAPAPAPGPAS--SSTVVSATNMFTVLAIAAV 61
>At1g55330 arabinogalactan-protein AGP21
Length = 58
Score = 29.3 bits (64), Expect = 0.39
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 5 KVTCVVLIVAASMSAALATNEVPAPAPGPASGASATV 41
K+ +++VA + SAA A V APAP P S A+ V
Sbjct: 7 KMMVFIMVVAVAFSAATAAT-VEAPAPSPTSDAAMFV 42
Score = 28.5 bits (62), Expect = 0.66
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAP 31
M MK + ++++ A +A AT E PAP+P
Sbjct: 4 MKMKMMVFIMVVAVAFSAATAATVEAPAPSP 34
>At4g30590 predicted GPI-anchored protein
Length = 190
Score = 28.9 bits (63), Expect = 0.51
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 14 AASMSAALATNEVPAPAPGPASGASATV 41
A +S T + PAPAPGPA+ +A V
Sbjct: 143 APKVSPVSPTAQTPAPAPGPAAAHNAAV 170
>At3g13520 arabinogalactan-protein AGP12
Length = 60
Score = 27.7 bits (60), Expect = 1.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 1 MDMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFALF 57
M MK + +++ + A + + APAP P S A+ V + L+ LF
Sbjct: 4 MKMKLIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGFLF 60
>At1g03870 predicted GPI-anchored protein
Length = 247
Score = 27.7 bits (60), Expect = 1.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 10 VLIVAASMSAALATNEVPAPAPGPASGASATVV 42
+L++AA + A AT + APAP PA + T +
Sbjct: 11 LLLIAAVLLATKATAQPAAPAPEPAGPINLTAI 43
>At5g49130 unknown protein
Length = 502
Score = 27.3 bits (59), Expect = 1.5
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Query: 5 KVTCVVLIVAASMSAALAT---NEVPAPAPGPASGASATVVGSLVGASV 50
+ T ++ + ++SAA++T NE+ A P A A+ VG+ V SV
Sbjct: 308 QTTSLMYTIPTALSAAVSTRVSNELGAGRPEKAKTAATVAVGAAVAVSV 356
>At4g08670 lipid transfer protein - like predicted GPI-anchored
protein
Length = 194
Score = 27.3 bits (59), Expect = 1.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 22 ATNEVPAPAPGPASGASATVVGSLV 46
A + V APAPGP+S +TV+ S++
Sbjct: 32 AKSPVGAPAPGPSSSDCSTVIYSMM 56
>At1g56120 receptor-like protein kinase, putative
Length = 1045
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 12 IVAASMSAALATNEVPAPAPGPASGASATVVGSLVGASVLSFFA 55
++AA + T V P + T+VG +VG +LS FA
Sbjct: 623 LIAAVSATPDFTPTVANRPPSKGKSRTGTIVGVIVGVGLLSIFA 666
>At1g17370 oligouridylate binding protein, putative
Length = 419
Score = 26.2 bits (56), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 19 AALATNEVPAPAPGPASGASAT 40
A A+N +P PAP P G SA+
Sbjct: 339 AGTASNPLPPPAPAPIPGFSAS 360
>At2g31850 hypothetical protein
Length = 113
Score = 25.8 bits (55), Expect = 4.3
Identities = 11/30 (36%), Positives = 15/30 (49%)
Query: 15 ASMSAALATNEVPAPAPGPASGASATVVGS 44
+S ++ +N VPAP P PA S S
Sbjct: 76 SSPDSSTGSNSVPAPVPSPAPAGSCCCCSS 105
>At2g13800 receptor-like protein kinase
Length = 601
Score = 25.8 bits (55), Expect = 4.3
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 28 APAPGPASGASATVVGSLVGASVLSFFAL 56
+P+P P+ ++A VVG GA++L FAL
Sbjct: 206 SPSPSPSGTSAAIVVGVAAGAALL--FAL 232
>At3g14100 oligouridylate binding protein, putative
Length = 427
Score = 25.4 bits (54), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 22 ATNEVPAPAPGPASGASA 39
A+N +P PAP P G SA
Sbjct: 347 ASNPLPPPAPAPVPGLSA 364
>At2g45160 putative SCARECROW gene regulator
Length = 640
Score = 25.4 bits (54), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 16 SMSAALATNEVPAPAPGPASGASATVVGSLVGASVL 51
S S++ A VP P+PG A + ++ L A+ L
Sbjct: 243 SSSSSTAVAMVPVPSPGMAGDDQSVIIEQLFNAAEL 278
>At2g26890 unknown protein
Length = 2535
Score = 25.4 bits (54), Expect = 5.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 2 DMKKVTCVVLIVAASMSAALATNEVPAPAPGPASGASATVVG 43
++ +VT + LI + L + P P P P A+ATV+G
Sbjct: 447 EVPEVTLMALITMLPSTPNLPVDAPPLPPPSPK--AAATVIG 486
>At3g55230 disease resistance response/ dirigent - like protein
Length = 306
Score = 25.0 bits (53), Expect = 7.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 20 ALATNEVPAPAPGPASGASATVV 42
A+ T P P PGPA+G ++
Sbjct: 48 AVTTTPTPIPLPGPATGGPEPIL 70
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,024,020
Number of Sequences: 26719
Number of extensions: 26668
Number of successful extensions: 237
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 30
length of query: 58
length of database: 11,318,596
effective HSP length: 34
effective length of query: 24
effective length of database: 10,410,150
effective search space: 249843600
effective search space used: 249843600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0318.14