BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0318.12
(1553 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11970 hypothetical protein 1072 0.0
At1g36590 hypothetical protein 1068 0.0
At1g35370 hypothetical protein 979 0.0
At2g10780 pseudogene 656 0.0
At2g04670 putative retroelement pol polyprotein 617 e-176
At2g14650 putative retroelement pol polyprotein 606 e-173
At2g05610 putative retroelement pol polyprotein 602 e-172
At4g10580 putative reverse-transcriptase -like protein 471 e-132
At2g06890 putative retroelement integrase 465 e-131
At3g31970 hypothetical protein 440 e-123
At4g07850 putative polyprotein 393 e-109
At2g07660 putative retroelement pol polyprotein 363 e-100
At4g16910 retrotransposon like protein 340 3e-93
At2g14640 putative retroelement pol polyprotein 283 5e-76
At1g37060 Athila retroelment ORF 1, putative 269 1e-71
At4g08100 putative polyprotein 263 6e-70
At4g07830 putative reverse transcriptase 259 6e-69
At4g03650 putative reverse transcriptase 254 2e-67
At1g20390 hypothetical protein 215 1e-55
At4g04230 putative transposon protein 179 9e-45
>At3g11970 hypothetical protein
Length = 1499
Score = 1072 bits (2772), Expect = 0.0
Identities = 605/1543 (39%), Positives = 914/1543 (59%), Gaps = 89/1543 (5%)
Query: 19 VMNRDREEERRNREEDRRIRDEERRER-----AIEHERVEQRFRNLEAIVATMTRRRAGE 73
V R +E + + +E + + + R R A +H+ + ++F +L A+ ++R AG+
Sbjct: 2 VTTRSQEGDGKGKEVELEVPLDSRVTRLETTVAEQHKEMMKQFADLYAV---LSRSTAGK 58
Query: 74 HGDSDGEQERR--RMEEERTVNGGQPGSVRDEADARENLQRT----ANAQTERWRKLDIP 127
D +R R + G P RD AR R+ A R K+D P
Sbjct: 59 MVDEQSTLDRSAPRSSQSMENRSGYPDPYRD---ARHQQVRSDHFNAYNNLTRLGKIDFP 115
Query: 128 VFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQ----VTT 183
F G W+ K+E +F + E+ KV+ + D A +W+Q + +
Sbjct: 116 RFDGTR-LKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYD 174
Query: 184 WTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIFV 243
W + + + ERF+ P A L L++ + ++ +FE + + EE+ + +++
Sbjct: 175 WKGYVKLLKERFE-DDCDDPMAELKHLQETDGIIDYHQKFELIKTRVN-LSEEYLVSVYL 232
Query: 244 NGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTF 303
GL+ + +++++P++ V+ L +G T KP +TT+
Sbjct: 233 AGLRTDTQMHVRMFQPQT----VRHCLF------------LGKTYEKAHPKKPA--NTTW 274
Query: 304 QKSVQIDTG-----QKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKL 358
+ TG QK G + + V+++ +K++ +EM ++
Sbjct: 275 STNRSAPTGGYNKYQKEGESKTDHYGNKGNFKPVSQQP----------KKMSQQEMSDRR 324
Query: 359 RKGECFRCDEKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNS 418
KG C+ CDEK+ P H +K + L R D +EE + E L + +E M +S+N+
Sbjct: 325 SKGLCYFCDEKYTPEHYLVHK--KTQLFRMDVDEEFEDAREELVNDDDEHMP--QISVNA 380
Query: 419 IQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDGH 478
+ GI+ K+++V G I +L+D G+THNF+ + A ++ ++ V V DG
Sbjct: 381 VSGIAGYKTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGR 440
Query: 479 VVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKL 538
++ +G + S ++Q D L L+G+D+VLG++WL LG I F++L ++FK
Sbjct: 441 KLRVEGKVTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKF 500
Query: 539 GNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEE---------T 589
N+KV+L G L + + +Q+ E V + +EV+++ E T
Sbjct: 501 NNQKVLLHG----LTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALT 556
Query: 590 PEL-----LKAVLSDFPALFAAPTELPPQR-RHDHAIHLKEGASIPNIRPYRYPHYQKNE 643
EL ++ VL+++P +F PT LPP R +H+H I L EG++ N RPYRY +QKNE
Sbjct: 557 SELGEESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNE 616
Query: 644 IEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDE 703
I+KLV ++L G ++ S SPY+SPV+LV+KKDG+WR CVDYR LN +TV + FPIP+I++
Sbjct: 617 IDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIED 676
Query: 704 LLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQS 763
L+DE+G A +FSKIDL++GYHQ+ M +D++KTAF+TH GH+E+LVMPFGLTNAP+TFQ
Sbjct: 677 LMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQG 736
Query: 764 LMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQ 823
LMN + +P LRK LVFFDDIL+YS ++EEH HL QV ++M + L K F +
Sbjct: 737 LMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPK 796
Query: 824 IEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLT 883
+EYLGH +SA + DP K++A+ WP P LK LRGFLGL GYYRRFV+ +G IA PL
Sbjct: 797 VEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLH 856
Query: 884 QLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGK 943
L K D+F+W QQAFE LK L + P L++P F K FV+ETDA G G+GAVL QEG
Sbjct: 857 ALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGH 916
Query: 944 PLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVV 1003
PLA+ S L + S+YE+EL+AV+ AV++WRHYLL HFII+TDQ+SLK+L EQ++
Sbjct: 917 PLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLN 976
Query: 1004 GEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSS----YCALSVLKVNDFEEWQTEM 1059
Q +W+ KL +D+EIQY+ GK+N ADA+SR + A++V++ + ++ Q
Sbjct: 977 TPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGY 1036
Query: 1060 LQDPKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGH 1119
D +LQ I+ L DP++ K ++ + L K K+V+ + + H S +GGH
Sbjct: 1037 ANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGH 1096
Query: 1120 SGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDV 1179
SG T++R+ + YW+GM DI+ ++ C TCQ+ K D + GLLQPLP+P +W++V
Sbjct: 1097 SGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEV 1156
Query: 1180 SMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTI 1239
SMDFI GLP S GK I+VVVDRL+K AHFI L HP++A VA +L V +LHG PT+I
Sbjct: 1157 SMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSI 1216
Query: 1240 VSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKW 1299
VSDRD +F S FW+E F + G LK +SAYHPQ+DGQTEVVNRCLE YLRC+ RP+ W
Sbjct: 1217 VSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLW 1276
Query: 1300 VTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLS 1359
L AE+W+N+NY+ S++M+PF+ +YG+ PPV L SK+A V R+++L
Sbjct: 1277 SKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLL 1336
Query: 1360 DLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPY 1419
L+ +L+++Q M+ +A++ R + +++IGD V++KLQPYR++S+ + N+KLSP+Y+GPY
Sbjct: 1337 FLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPY 1396
Query: 1420 PIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESV 1479
I+ + G VAY+L LP++S+VHPVFHVS LK VG LP+ + + E + PE V
Sbjct: 1397 KIIDRCGEVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFEKV--PEKV 1454
Query: 1480 L---AVRETTMGQIEVLIQWHSLPACENSWESAAQLHEAFPDF 1519
+ V +VL++W + P E +WE L + FP+F
Sbjct: 1455 VERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEF 1497
>At1g36590 hypothetical protein
Length = 1499
Score = 1068 bits (2762), Expect = 0.0
Identities = 598/1536 (38%), Positives = 910/1536 (58%), Gaps = 75/1536 (4%)
Query: 19 VMNRDREEERRNREEDRRIRDEERRER-----AIEHERVEQRFRNLEAIVATMTRRRAGE 73
V R +E + + +E + + + R R A +H+ + ++F +L A+ ++R AG+
Sbjct: 2 VTTRSQEGDGKGKEVELEVPLDSRVTRLETTVAEQHKEMMKQFADLYAV---LSRSTAGK 58
Query: 74 HGDSDGEQERRRMEEERTVNGGQPGSVRDEADARENLQRT----ANAQTERWRKLDIPVF 129
D +R +++ + G + DAR R+ A R K+D P F
Sbjct: 59 MVDEQSTLDRSAPRSSQSMEN-RSGYLDPYRDARHQQVRSDHFNAYNNLTRLGKIDFPRF 117
Query: 130 QGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQ----VTTWT 185
G W+ K+E +F + E+ KV+ + D A +W+Q + + W
Sbjct: 118 DGTR-LKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWK 176
Query: 186 KFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIFVNG 245
+ + + ERF+ P A L L++ + ++ +FE + + EE+ + +++ G
Sbjct: 177 GYVKLLKERFE-DDCDDPMAELKHLQETDGIIDYHQKFELIKTRVN-LSEEYLVSVYLAG 234
Query: 246 LKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTFQK 305
L+ + +++++P+++ + E+ +L ST+R P +QK
Sbjct: 235 LRTDTQMHVRMFQPQTVRHCLFLGKTYEKAHLKKPANTTWSTNRS----APTGGYNKYQK 290
Query: 306 SVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLRKGECFR 365
+ T G+ + Q +K++ +EM ++ KG C+
Sbjct: 291 EGESKTDHYGNKGNFKPVSQQP-------------------KKMSQQEMSDRRSKGLCYF 331
Query: 366 CDEKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNSIQGISSR 425
CDEK+ P H +K + L R D +EE + E L + +E M +S+N++ GI+
Sbjct: 332 CDEKYTPEHYLVHK--KTQLFRMDVDEEFEDAREELVNDDDEHMP--QISVNAVSGIAGY 387
Query: 426 KSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDGHVVKSKGV 485
K+++V G I +L+D G+THNF+ + A ++ ++ V V DG ++ +G
Sbjct: 388 KTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGK 447
Query: 486 CKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVL 545
+ S ++Q D L L+G+D+VLG++WL LG I F++L ++FK N+KV+L
Sbjct: 448 VTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLL 507
Query: 546 KGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEE---------TPEL---- 592
G L + + +Q+ E V + +EV+++ E T EL
Sbjct: 508 HG----LTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEES 563
Query: 593 -LKAVLSDFPALFAAPTELPPQR-RHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAE 650
++ VL+++P +F PT LPP R +H+H I L EG++ N RPYRY +QKNEI+KLV +
Sbjct: 564 VVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVED 623
Query: 651 MLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGP 710
+L G ++ S SPY+SPV+LV+KKDG+WR CVDYR LN +TV + FPIP+I++L+DE+G
Sbjct: 624 LLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGG 683
Query: 711 ARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLR 770
A +FSKIDL++GYHQ+ M +D++KTAF+TH GH+E+LVMPFGLTNAP+TFQ LMN + +
Sbjct: 684 AVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFK 743
Query: 771 PVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHV 830
P LRK LVFFDDIL+YS ++EEH HL QV ++M + L K F ++EYLGH
Sbjct: 744 PFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHF 803
Query: 831 LSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDS 890
+SA + DP K++A+ WP P LK LRGFLGL GYYRRFV+ +G IA PL L K D+
Sbjct: 804 ISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDA 863
Query: 891 FQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSA 950
F+W QQAFE LK L + P L++P F K FV+ETDA G G+GAVL QEG PLA+ S
Sbjct: 864 FEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISR 923
Query: 951 TLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKW 1010
L + S+YE+EL+AV+ AV++WRHYLL HFII+TDQ+SLK+L EQ++ Q +W
Sbjct: 924 QLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQW 983
Query: 1011 ISKLSGYDFEIQYKPGKDNSAADAMSRRSS----YCALSVLKVNDFEEWQTEMLQDPKLQ 1066
+ KL +D+EIQY+ GK+N ADA+SR + A++V++ + ++ Q D +LQ
Sbjct: 984 LPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQ 1043
Query: 1067 AIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTY 1126
I+ L DP++ K ++ + L K K+V+ + + H S +GGHSG T+
Sbjct: 1044 DIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTH 1103
Query: 1127 RRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGG 1186
+R+ + Y +GM DI+ ++ C TCQ+ K D + GLLQPLP+P +W++VSMDFI G
Sbjct: 1104 QRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEG 1163
Query: 1187 LPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSL 1246
LP S GK I+VVVDRL+K AHFI L HP++A VA +L V +LHG PT+IVSDRD +
Sbjct: 1164 LPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVV 1223
Query: 1247 FLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWA 1306
F S FW+E F + G LK +SAYHPQ+DGQTEVVNRCLE YLRC+ RP+ W L A
Sbjct: 1224 FTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALA 1283
Query: 1307 EFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLL 1366
E+W+N+NY+ S++M+PF+ +YG+ PPV L SK+A V R+++L L+ +L+
Sbjct: 1284 EYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLM 1343
Query: 1367 KSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIG 1426
++Q M+ +A++ R + +++IGD V++KLQPYR++S+ + N+KLSP+Y+GPY I+ + G
Sbjct: 1344 RAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCG 1403
Query: 1427 AVAYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVL---AVR 1483
VAY+L LP++S+VHPVFHVS LK VG LP+ + + E + PE V+ V
Sbjct: 1404 EVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFEKV--PEKVVERKMVN 1461
Query: 1484 ETTMGQIEVLIQWHSLPACENSWESAAQLHEAFPDF 1519
+VL++W + P E +WE L + FP+F
Sbjct: 1462 RQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEF 1497
>At1g35370 hypothetical protein
Length = 1447
Score = 979 bits (2530), Expect = 0.0
Identities = 574/1520 (37%), Positives = 855/1520 (55%), Gaps = 138/1520 (9%)
Query: 35 RRIRDEERRERAIEHER-VEQRFRNLEAIVA----TMTRRRAGEHGDSDGEQERRRMEEE 89
R ++E+ + + +E E + R LE +VA +M + A +R E E
Sbjct: 5 RSSQEEDVKGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMADMMSAMSRTTAKRVTEGE 64
Query: 90 RTVNGGQP----------GSVRDEADAR-----ENLQRTANAQ---TERWRKLDIPVFQG 131
+ ++ P G V + D + E +++ N Q R K+D P F G
Sbjct: 65 KVLDRSVPRSSTSSMARSGFVEHQRDFQRDFRPEMVRQEVNNQYGNLTRLGKIDFPRFDG 124
Query: 132 EEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWY----QWWETCNQVTTWTKF 187
W+ K+E +F + EE KV+ + + D A +W+ Q + W ++
Sbjct: 125 SR-INEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNWPEY 183
Query: 188 KEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIFVNGLK 247
+ + +RF+ + P A L L++ + E+ QFE L + EE+ + +++ GL+
Sbjct: 184 VKLLKDRFE-DACDDPMAELKKLQETDGIVEYHQQFELIKVRLN-LSEEYLVSVYLAGLR 241
Query: 248 EEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTFQKSV 307
+ ++++EPK++ ++ E+ + K ST QK
Sbjct: 242 TDTQMHVRMFEPKTVRDCLRLGKYYERAHP-----------------KKTVSSTWSQKGT 284
Query: 308 QIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLRKGECFRCD 367
+ GG YR + E K G C+ CD
Sbjct: 285 R---------------------------------SGGSYRPVKEVEQKSD-HLGLCYFCD 310
Query: 368 EKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNSIQGISSRKS 427
EKF P H +K + L R D +EE + +E L+++ E + +S+N++ GIS K+
Sbjct: 311 EKFTPEHYLVHK--KTQLFRMDVDEEFEDAVEVLSDDDHEQKPMPQISVNAVSGISGYKT 368
Query: 428 LKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAYTVEVGDGHVVKSKGVCK 487
+ V G + + +L+D G+THNFI ++A ++ + V V DG + G K
Sbjct: 369 MGVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIK 428
Query: 488 NLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKG 547
+ ++Q D L L+GVD+VLG++WL LG I F++L ++F N++V L G
Sbjct: 429 GFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHG 488
Query: 548 ----------EPELLKKRASMNAL----VKAIQQQGEGYVLQYQMLEKEVAKAEETPELL 593
+L K +A L V+ + E + L +V + ++
Sbjct: 489 IITGSVRDIKAHKLQKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEES----VV 544
Query: 594 KAVLSDFPALFAAPTELPPQR-RHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEML 652
+ ++ +FP +FA PT+LPP R +HDH I L EGA+ N RPYRY +QK+EI+K+V +M+
Sbjct: 545 QNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMI 604
Query: 653 NAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPAR 712
+G I+ S SP++SPV+LV+KKDG+WR CVDY LN +TV ++F IP+I++L+DE+G +
Sbjct: 605 KSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSV 664
Query: 713 VFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPV 772
VFSKIDL++GYHQ+ M +D++KTAF+TH GH+E+LVM FGLTNAP+TFQSLMN V R
Sbjct: 665 VFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDF 724
Query: 773 LRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLS 832
LRK LVFFDDILIYS ++EEH HL V ++M H L F +G E+LGH +S
Sbjct: 725 LRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKL--------FAKGSKEHLGHFIS 776
Query: 833 AGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSFQ 892
A + DP K++A+ WP P +K +RGFLG GYYRRFV+++G IA PL L K D F
Sbjct: 777 AREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPLHALTKTDGFC 836
Query: 893 WGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATL 952
W Q AF+ LK L P LA+P F K F++ETDA G G+ AVL Q+G PLA+ S L
Sbjct: 837 WSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRAVLMQKGHPLAYISRQL 896
Query: 953 SDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWIS 1012
+ S+YE+EL+A + AV++WRHYLL HFII+TDQ+SLK+L EQ++ Q +W+
Sbjct: 897 KGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLP 956
Query: 1013 KLSGYDFEIQYKPGKDNSAADAMSRRSS----YCALSVLKVNDFEEWQTEMLQDPKLQAI 1068
KL +D+EIQY+ GK+N ADA+SR + ALS+++ + +E Q D L+ I
Sbjct: 957 KLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALSIVECDFLKEIQVAYESDGVLKDI 1016
Query: 1069 VHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRR 1128
+ L P+A K Y+ L K K+V+ L + H S +GG SG +++R
Sbjct: 1017 ISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDASHQR 1076
Query: 1129 LAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLP 1188
+ ++ YW+GM DI+ F+ C TCQ+ K DN + GLLQPLP+P ++W DVSMDFI GLP
Sbjct: 1077 VKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLP 1136
Query: 1189 KSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFL 1248
S GK I+VVVDRL+K AHF+ L HP++A VA FL V + HG PT+IVSDRD LF
Sbjct: 1137 NSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFT 1196
Query: 1249 SSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEF 1308
S FWKE F++ G +L+ SSAYHPQ+DGQTEVVNRCLE YLRC+ +RP W LP AE+
Sbjct: 1197 SDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEY 1256
Query: 1309 WFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKS 1368
W+N+NY+ S++M+PF+ +YG+ PP+ L SK+A V R+ +L L+ +L+++
Sbjct: 1257 WYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRA 1316
Query: 1369 QDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAV 1428
Q M+ +A++ R + + IGD V++KLQPYR++S+ ++N+KLSP+Y+GPY I+ K G V
Sbjct: 1317 QHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGEV 1376
Query: 1429 AYRLELPAHSRVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVLAV-RETTM 1487
++ + P LP + E ++E + V R TM
Sbjct: 1377 -------------------MVGNVTTSTQLPSVLPDIFEKAPEYILERKLVKRQGRAATM 1417
Query: 1488 GQIEVLIQWHSLPACENSWE 1507
VL++W P E +W+
Sbjct: 1418 ----VLVKWIGEPVEEATWK 1433
>At2g10780 pseudogene
Length = 1611
Score = 656 bits (1693), Expect = 0.0
Identities = 457/1477 (30%), Positives = 738/1477 (49%), Gaps = 105/1477 (7%)
Query: 96 QPGSVRDEADARENLQRTANAQTERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEE 155
QP R D L+ + T + P+ E W +L+R F+ E+
Sbjct: 157 QPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADE-----WRSRLKRNFKSTRCPEDY 211
Query: 156 KVQAIMVALDGKALSWYQWWETC-----NQVTTWTKFKEAMLERFQLTS--NSSPFAALL 208
+ + L+G A + WW T ++V ++ F++ +++ + A L
Sbjct: 212 QRDIAVHFLEGDA---HNWWLTVEKRRGDEVRSFADFEDEFNKKYFPPEAWDRLECAYLD 268
Query: 209 ALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDI--FVNGLKEEIAAEIKLYEPKSLTIMV 266
++ +V E+ +F R + EE + F+ GL+ EI + S++ +V
Sbjct: 269 LVQGNRTVREYDEEFNRLRRYVGRELEEEQAQLRRFIRGLRIEIRNHCLVRTFNSVSELV 328
Query: 267 KKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQ 326
++A M+E+ GI RY + K P R+ Q + D +K T+
Sbjct: 329 ERAAMIEE--------GI-EEERYLNREKAPIRNN--QSTKPADKKRKFDKVDNTK---- 373
Query: 327 SSSGSVNERVG-GKPARGGVYRKLTGEEMKEKLRKGECFRCDEKFGPNHIC-KNKQFRVM 384
S E V GK G ++ + G C RC K C K + +
Sbjct: 374 -SDAKTGECVTCGKNHSGTCWKAI-----------GACGRCGSKDHAIQSCPKMEPGQSK 421
Query: 385 LLRDD-------GEEEEIETLEPLTEEIEEAMELKHLSLNSIQGISSRKSLKVWGKLKGT 437
+L ++ G+ ++ P ++A + + N + R+++
Sbjct: 422 VLGEETRTCFYCGKTGHLKRECPKLTAEKQAGQRDNRGGNGLPPPPKRQAVA------SR 475
Query: 438 AIVVLVDCGATHNF--ISQSLAREMELQITETPAYTVEVGDGHVVKSKGVCKNLSVQIQG 495
+ + NF I+ +E T V G + G+ + +SV + G
Sbjct: 476 VYELSEEANDAGNFRAITGGFRKE-----PNTDYGMVRAAGGQAMYPTGLVRGISVVVNG 530
Query: 496 FVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKKR 555
+ D + L+ DV+LG++WL G KA+ + + + + +LK +
Sbjct: 531 VNMPADLIIVPLKKHDVILGMDWL---GKYKAHIDCHRGRIQFERDEGMLKFQGIRTTSG 587
Query: 556 ASMNALVKAIQQQGEGYVLQYQMLE-KEVAKAEETPELLKAVLSDFPALFAAPTELPPQR 614
+ + + ++A + G+G + KEV + E ++ ++++F +FAA + +PP R
Sbjct: 588 SLVISAIQAERMLGKGCEAYLATITTKEVGASAELKDI--PIVNEFSDVFAAVSGVPPDR 645
Query: 615 RHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKK 674
I L+ G + + PYR + +++K + E+L+ G IRPS SP+ +PV+ V+KK
Sbjct: 646 SDPFTIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKK 705
Query: 675 DGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVE 734
DGS+R C+DYR LNK+TV NK+P+P IDEL+D++G A+ FSKIDL SGYHQI ++ DV
Sbjct: 706 DGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVR 765
Query: 735 KTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEH 794
KTAFRT H+EF+VMPFGLTNAP+ F +MN V R L + ++F +DIL+YS + E H
Sbjct: 766 KTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAH 825
Query: 795 VVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKD 854
HL VL+ + +H+L K F + + +LGHV+S V+ DP+K+ ++ WP P++
Sbjct: 826 QEHLRAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRN 885
Query: 855 LKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKD-SFQWGPSPQQAFEALKHTLTEIPT 913
+R FLGL GYYRRFV + +A+PLT+L KD +F W +++F LK LT P
Sbjct: 886 ATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPV 945
Query: 914 LAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAV 973
L +P+ + + + TDAS GLG VL Q+G +A+ S L + ++ E+ AVV +
Sbjct: 946 LVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFL 1005
Query: 974 QRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAAD 1033
+ WR YL G I TD KSLK++ Q + Q +W+ ++ Y+ +I Y PGK N AD
Sbjct: 1006 KIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVAD 1065
Query: 1034 AMSRRSSYC-----------ALSVLKVN----DFEEWQTEMLQDPKLQAIVHDLIVDPEA 1078
A+SRR S + L VN + E L + + E
Sbjct: 1066 ALSRRRSEVEAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQERDEE 1125
Query: 1079 HKGY---------TLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRL 1129
KG+ T + + G++ + + + +E H S H G + YR L
Sbjct: 1126 IKGWAQNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDL 1185
Query: 1130 AAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPK 1189
+W GMK D+ +VA+C TCQ K ++ P+GLLQ LP+P W ++MDF+ GLP
Sbjct: 1186 KRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPT 1245
Query: 1190 --SNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLF 1247
+ + + VVVDRLTK AHF+ + A +A ++ E+VRLHG P +IVSDRD+ F
Sbjct: 1246 GIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRF 1305
Query: 1248 LSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAE 1307
S FWK + GT++ S+AYHPQTD Q+E + LE LR W L E
Sbjct: 1306 TSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVE 1365
Query: 1308 FWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLK 1367
F +N+++ S MSP++ALYGR L T + + + E + L+ L +
Sbjct: 1366 FAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKE 1425
Query: 1368 SQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGA 1427
+QD ++YANK+R+++++Q+GD V+LK Y+ +KLSPRY GPY ++ ++GA
Sbjct: 1426 AQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTS-RKKLSPRYVGPYKVIERVGA 1484
Query: 1428 VAYRLELPAH-SRVHPVFHVSLLKTAVGTNFQP-QPLPAALNEDHELLVEPESVL-AVRE 1484
VAY+L+LP + H VFHVS L+ + + + +P L E+ + P ++ + +
Sbjct: 1485 VAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTK 1544
Query: 1485 TTMGQIEVLIQ--WHSLPACENSWESAAQLHEAFPDF 1519
T G+ L++ W+ E +WE+ ++ FP++
Sbjct: 1545 GTRGKARDLLKVLWNCRGREEYTWETENKMKANFPEW 1581
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 617 bits (1591), Expect = e-176
Identities = 382/1085 (35%), Positives = 576/1085 (52%), Gaps = 74/1085 (6%)
Query: 465 TETPAYTVEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGD 524
TE V+V G + G K + +QI G + D + + DV+LG++WL
Sbjct: 358 TERGHLHVKVAGGQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGMDWLDHYR- 416
Query: 525 IKANFEELTLKFKLGNKKVVLKG-EPELLKKRASMNALVKAIQQQGEGYVLQYQMLEK-- 581
+ + + F+ ++V +G P S K I++ E Y++ M E
Sbjct: 417 VHLDCHRGRVSFERPEGRLVYQGVRPTSGSLVISAVQAKKMIEKGCEAYLVTISMPESLG 476
Query: 582 EVAKAEETPELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQK 641
+VA ++ V+ +F +F + LPP R I L+ G + + PYR +
Sbjct: 477 QVAVSDIR------VIQEFEDVFQSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEM 530
Query: 642 NEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVI 701
E++K + ++L G IRPS SP+ +PV+ V+KKDGS+R C+DYR LN +TV NK+P+P I
Sbjct: 531 TELKKQLEDLLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRI 590
Query: 702 DELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTF 761
DELLD++ A FSKIDL SGYHQI + DV KTAFRT GH+EF+VMPF LTNAP+ F
Sbjct: 591 DELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAF 650
Query: 762 QSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGR 821
LMN V + L + ++F DDIL+YS + EEH VHL +V++ + + L K F +
Sbjct: 651 MRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQ 710
Query: 822 GQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARP 881
+I +LGH++SA V+ DP+K+EA+ WP P + +R FL LTGYYRRFVK + +A+P
Sbjct: 711 REIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQP 770
Query: 882 LTQLLKKD-SFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQ 940
+T+L KD F W P ++ F +LK LT P LA+P+ + +++ TDAS GLG VL Q
Sbjct: 771 MTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQ 830
Query: 941 EGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQ 1000
GK +A+ S L ++ E+ V+ A++ WR YL G + TD KSLK++ Q
Sbjct: 831 RGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQ 890
Query: 1001 QVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRS-------------------SY 1041
+ Q +W+ ++ YD EI Y PGK N ADA+SR+
Sbjct: 891 PELNLRQMRWMELVADYDLEIAYHPGKANVVADALSRKRVGAAPGQSVEALVSEIGALRL 950
Query: 1042 CALSVLKVNDFEEWQTEMLQDPKLQAIVHDLIVDPEAHKGYTLK---DHRLFYKGKLVLS 1098
C ++ + + ++L +L + ++ +G + + +F G++ +
Sbjct: 951 CVVAREPLGLEAVDRADLLTRARLAQEKDEGLIAASKAEGSEYQFAANGTIFVYGRVCVP 1010
Query: 1099 KQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFD 1158
K + E HAS+ H G + YR L W GMK D+ ++VAECD CQ K +
Sbjct: 1011 KDEELRREILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAE 1070
Query: 1159 NLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTA 1218
+ P D I V++DRLTK AHF+ +R A
Sbjct: 1071 HQVP-------------------------------DAIWVIMDRLTKSAHFLAIRKTDGA 1099
Query: 1219 PEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTE 1278
+A ++ E+V+LHG P +IVSDRDS F +FW+ GT+++ S+AYHPQTDGQ+E
Sbjct: 1100 AVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSE 1159
Query: 1279 VVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGT 1338
+ LE LR W L EF +N++Y S M+PF+ALYGR L+ T
Sbjct: 1160 RTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLRWT 1219
Query: 1339 TIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPY 1398
+ + D E + L+ N+ ++Q R+YA+K+RR++++++GD V+LK+
Sbjct: 1220 QVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAML 1279
Query: 1399 R--RRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRV-HPVFHVSLLKTAVGT 1455
R RS+ + KLSPRY GP+ IV ++G VAYRLELP R H VFHV +L+ +
Sbjct: 1280 RGPNRSI---LETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLHK 1336
Query: 1456 NFQP-QPLPAALNEDHELLVEPESVL--AVRETTMGQIEVL-IQWHSLPACENSWESAAQ 1511
+ + +P L + L P VL ++E +I ++ + W E +WE A+
Sbjct: 1337 DDEVLVKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEAR 1396
Query: 1512 LHEAF 1516
+ F
Sbjct: 1397 MKARF 1401
Score = 38.5 bits (88), Expect = 0.031
Identities = 55/241 (22%), Positives = 95/241 (38%), Gaps = 38/241 (15%)
Query: 133 EDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETC-----NQVTTWTKF 187
E+A SW +++R F E +V + L+G A + WW + +W F
Sbjct: 145 EEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDA---HLWWRSVTARRRQADMSWADF 201
Query: 188 -KEAMLERFQLTSNSSPFAALLALKQ-EGSVEEFVGQFER---FAGMLKGI-DEEHYMDI 241
E + F + A L L Q E SV E+ +F R +AG +G+ D++ M
Sbjct: 202 VAEFNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNRLLAYAG--RGMEDDQAQMRR 259
Query: 242 FVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRST 301
F+ GL+ ++ + ++ + + +V+ A VE+ R P ++
Sbjct: 260 FLRGLRPDLRVQCRVSQYATKAALVETAAEVEE-----------DLQRQVVGVSPAVQTK 308
Query: 302 TFQKSVQIDTGQKSGSGSVTQGTVQS-----------SSGSVNERVGGKPARGGVYRKLT 350
Q+ V G K G + S S GS++ V RG ++ K+
Sbjct: 309 NTQQQVTPSKGGKPAQGQKRKWDHPSRAGQGGRAGYFSCGSLDHTVADCTERGHLHVKVA 368
Query: 351 G 351
G
Sbjct: 369 G 369
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 606 bits (1563), Expect = e-173
Identities = 390/1090 (35%), Positives = 581/1090 (52%), Gaps = 87/1090 (7%)
Query: 436 GTAIVVLVDCGATHNFISQSLAREMELQITETPAY-TVEVGDGHVVKSKGVCKNLSVQIQ 494
G VL D GA+H FI+ A ++ V+V G V G K + +QI
Sbjct: 310 GVEAHVLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQIA 369
Query: 495 GFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKK 554
G + D + + DV+LG++WL + + + F+ +V +G +
Sbjct: 370 GESMPADLIISPVELYDVILGMDWLDHYR-VHLDCHRGRVSFERPEGSLVYQGV-----R 423
Query: 555 RASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEETPELLKAVLSDFPALFAAPTELPPQR 614
S + ++ A+Q + +M+EK +A L +F +F + LPP R
Sbjct: 424 PTSGSLVISAVQAE--------KMIEKGC----------EAYL-EFEDVFQSLQGLPPSR 464
Query: 615 RHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKK 674
I L+ G + + PYR + E++K + ++L A PV+ V+KK
Sbjct: 465 SDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGA------------PVLFVKKK 512
Query: 675 DGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVE 734
DGS+R C+DYR LN +TV NK+P+P IDELLD++ A FSKIDL SGYH I + DV
Sbjct: 513 DGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVR 572
Query: 735 KTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEH 794
KTAFRT GH+EF+VMPFGLTNAP+ F LMN V + VL + ++F DDIL+YS ++EEH
Sbjct: 573 KTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEH 632
Query: 795 VVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKD 854
VHL +V++ + + L K F + ++ +LGH++SA V+ DP+K+EA+ W P +
Sbjct: 633 EVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTN 692
Query: 855 LKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKD-SFQWGPSPQQAFEALKHTLTEIPT 913
+R FLGL GYYRRFVK + +A+P+T+L KD F W P ++ F +LK LT P
Sbjct: 693 ATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPV 752
Query: 914 LAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAV 973
LA+P+ + +++ TDASG GLG VL Q GK +A+ S L ++ E+ AV+ A+
Sbjct: 753 LALPEHGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFAL 812
Query: 974 QRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAAD 1033
+ WR YL G + + TD KSLK++ Q + Q +W+ ++ YD EI Y PGK N AD
Sbjct: 813 KIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANVVAD 872
Query: 1034 AMSRRSSYCALSVLKVNDFEEWQTEMLQDPKLQAIVHDLIVDPEAHKGYTLKDHRLFYKG 1093
ALS +V E L + + +P + D L +
Sbjct: 873 ---------ALSHKRVGAAPGQSVEALVSEIGALRLCAVAREPLGLEAVDRAD--LLTRV 921
Query: 1094 KLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQ 1153
+L K G Y+ EG + D+ ++VAECD CQ
Sbjct: 922 RLAQEKDE-------------------GLIAAYKA-------EGSE-DVANWVAECDVCQ 954
Query: 1154 RNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLR 1213
K ++ P G+LQ LP+P W +++DF+ GLP S KD I V+VDRLTK AHF+ +R
Sbjct: 955 LVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIR 1014
Query: 1214 HPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQT 1273
A +A ++ E+V+LHG P +IVSDRDS F S+FW+ GT+++ S+AYHPQT
Sbjct: 1015 KTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQT 1074
Query: 1274 DGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPV 1333
GQ+E + LE LR W L EF +N++Y S M+PF+ALY R
Sbjct: 1075 YGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAPFEALYERPCRT 1134
Query: 1334 LLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFL 1393
L T + + D E + L+ N+ ++QD R+YA+K+RR++++++GD V+L
Sbjct: 1135 PLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYL 1194
Query: 1394 KLQPYR--RRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRV-HPVFHVSLLK 1450
K+ R RS+++ KLSPRY GP+ IV ++G VAYRLELP R H VFHVS+L+
Sbjct: 1195 KMAMLRGPNRSISE---TKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLR 1251
Query: 1451 TAVGTNFQP-QPLPAALNEDHELLVEPESVL--AVRETTMGQIEVL-IQWHSLPACENSW 1506
+ + + +P L + L P VL ++E +I ++ + W + +W
Sbjct: 1252 KCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTKETW 1311
Query: 1507 ESAAQLHEAF 1516
E A++ F
Sbjct: 1312 EPEARMKARF 1321
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 602 bits (1553), Expect = e-172
Identities = 315/653 (48%), Positives = 421/653 (64%), Gaps = 56/653 (8%)
Query: 593 LKAVLSDFPALFAAPTELPPQRR-HDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEM 651
++ V+++FP +F PT+LPP R HDH I L E ++ N RPYRY +QKNEI+K+V +M
Sbjct: 7 VEKVVTEFPDIFVEPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDM 66
Query: 652 LNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPA 711
L +G I+ S SPY+SPV+LV+KKDG+WR CVDYR LN +TV ++FPIP+I++L+DE+G +
Sbjct: 67 LASGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGS 126
Query: 712 RVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRP 771
V+SKIDL++GYHQ+ M D+ KTAF+TH GHYE+LVMPFGLTNAP++FQSLMN +P
Sbjct: 127 NVYSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKP 186
Query: 772 VLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVL 831
LRK LVFFDDILIYS +MEEH HL V ++M H L K F ++EYLGH +
Sbjct: 187 FLRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFI 246
Query: 832 SAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDSF 891
S +A DP K++A+ WPVP +LK L GFLGLTGYYRRF
Sbjct: 247 SGEGIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF-------------------- 286
Query: 892 QWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSAT 951
FV+E DA G G+GAVL QEG PLAF S
Sbjct: 287 -------------------------------FVVEMDACGHGIGAVLMQEGHPLAFISRQ 315
Query: 952 LSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWI 1011
L + S+YE+EL+AV+ V++WRHYL+ HFII+TDQ+SLK+L EQ++ Q +W+
Sbjct: 316 LKGKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQRLNTPIQQQWL 375
Query: 1012 SKLSGYDFEIQYKPGKDNSAADAMSRRSS----YCALSVLKVNDFEEWQTEMLQDPKLQA 1067
KL +D+EIQYK GK+N ADA+SR + ALSV++ + +E Q + D +Q
Sbjct: 376 PKLLEFDYEIQYKQGKENLVADALSRVEGSEVLHMALSVVECDLLKEIQAGYVTDGDIQG 435
Query: 1068 IVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYR 1127
I+ L ++ K YT L K K+V+ S + + H S +GGHSG T++
Sbjct: 436 IITILQQQADSKKHYTWSQGVLRRKNKIVVPNNSGIKDTILRWLHCSGMGGHSGKEVTHQ 495
Query: 1128 RLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGL 1187
R+ + YW+ M DI+ F+ C TCQ+ K DN + GLLQPLP+P ++W+DVSMDFI GL
Sbjct: 496 RVKGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIPDRIWSDVSMDFIDGL 555
Query: 1188 PKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIV 1240
P SNGK I+VVVDRL+K AHFI L HP++A VA +L V +LHG P++IV
Sbjct: 556 PLSNGKTVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFKLHGCPSSIV 608
Score = 127 bits (320), Expect = 4e-29
Identities = 58/136 (42%), Positives = 97/136 (70%)
Query: 1320 MSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYANKK 1379
M+P++A+YG+ PP+ L SK+A V R+ ++ L+ +L+++Q M+ A++
Sbjct: 625 MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684
Query: 1380 RRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSR 1439
+ ++++GD VF+KLQPYR++S+ + +KLSP+Y+GPY ++ + G VAY+L+LPA+S+
Sbjct: 685 ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPANSQ 744
Query: 1440 VHPVFHVSLLKTAVGT 1455
VHPVFHVS L+ VGT
Sbjct: 745 VHPVFHVSQLRVLVGT 760
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 471 bits (1211), Expect = e-132
Identities = 282/772 (36%), Positives = 418/772 (53%), Gaps = 39/772 (5%)
Query: 477 GHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEELTLKF 536
G + G K + +QI G + D + + DV+LG++WL + ++ + F
Sbjct: 344 GQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGMDWL-DYYRVHLDWHRGRVFF 402
Query: 537 KLGNKKVVLKG-EPELLKKRASMNALVKAIQQQGEGYVLQYQMLEK--EVAKAEETPELL 593
+ ++V +G P S K I++ E Y++ M E +VA ++
Sbjct: 403 ERPEGRLVYQGVRPISGSLVISAVQAEKMIEKGCEAYLVTISMPESVGQVAVSDIR---- 458
Query: 594 KAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLN 653
V+ +F +F + LPP + I L+ G + + PYR + E++K + ++L
Sbjct: 459 --VVQEFQDVFQSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLG 516
Query: 654 AGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARV 713
G IRPS SP+ +PV+ V+KKDGS+R C+DYR LN++TV N++P+P IDELLD++ A
Sbjct: 517 KGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATC 576
Query: 714 FSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVL 773
FSKIDL SGYHQI + DV KTAFRT GH+EF+VMPFGLTNAP+ F LMN V + L
Sbjct: 577 FSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFL 636
Query: 774 RKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSA 833
+ ++F DDIL+YS + EE VHL +V++ + + L K F + ++ +LGH++SA
Sbjct: 637 DEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSA 696
Query: 834 GTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKD-SFQ 892
V+ DP+K+EA+ WP P + +R FLG GYYRRFVK + +A+P+T+L KD F
Sbjct: 697 EGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFV 756
Query: 893 WGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATL 952
W ++ F +LK LT P LA+P+ + +++ TDAS GLG VL Q GK +A+ S L
Sbjct: 757 WSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQL 816
Query: 953 SDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWIS 1012
++ E+ AV+ A++ WR YL G + TD KSLK++ Q + Q +W+
Sbjct: 817 MKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWME 876
Query: 1013 KLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVNDFEEWQTEMLQDPKLQAIVHDL 1072
++ YD EI Y PGK N DA+SR+ AL E + +L A+ +
Sbjct: 877 LVADYDLEIAYHPGKANVVVDALSRKRVGAAL-----GQSVEVLVSEIGALRLCAVAREP 931
Query: 1073 IVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAV 1132
+ + L RL K L + YR L
Sbjct: 932 LGLEAVDRADLLTRVRLAQKKDEGLRAT-----------------------KMYRDLKRY 968
Query: 1133 VYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNG 1192
W GMK D+ ++VAECD CQ K ++ G+LQ LP+P W ++MD + GL S
Sbjct: 969 YQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGLRVSRT 1028
Query: 1193 KDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRD 1244
KD I V+VDRLTK AHF+ +R A +A F+ E+V+LHG P + +D
Sbjct: 1029 KDAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEAQD 1080
Score = 92.0 bits (227), Expect = 2e-18
Identities = 57/160 (35%), Positives = 93/160 (57%), Gaps = 10/160 (6%)
Query: 1364 NLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYR--RRSLAKKMNEKLSPRYYGPYPI 1421
N+ ++QD R+YA+K+RR++++++GD V+LK+ R RS+++ KLSPRY GP+ I
Sbjct: 1074 NMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISE---TKLSPRYMGPFKI 1130
Query: 1422 VAKIGAVAYRLELPAHSRV-HPVFHVSLLKTAVGTNFQP-QPLPAALNEDHELLVEPESV 1479
V ++ VAYRLELP R H VFHVS+L+ + + + +P L + L P V
Sbjct: 1131 VERVEPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPEDLQPNMTLEARPVRV 1190
Query: 1480 L--AVRETTMGQIEVL-IQWHSLPACENSWESAAQLHEAF 1516
L ++E +I ++ + W E +WE A++ F
Sbjct: 1191 LERRIKELRQKKIPLIKVLWDCDGVTEETWEPEARMKARF 1230
Score = 30.8 bits (68), Expect = 6.4
Identities = 35/161 (21%), Positives = 67/161 (40%), Gaps = 28/161 (17%)
Query: 119 ERWRKLDIPVFQG---EEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWW 175
E+ +++D F G E+A SW ++ R F E +V + L+G A + WW
Sbjct: 142 EQLQRIDTGYFSGGTSPEEADSWRSRVGRNFGSSRCPAEYRVDLAVHFLEGDA---HLWW 198
Query: 176 ETCNQVTTWTKFKEAMLERFQLTSNSSPFAALLALK--QEGSVEEFVGQFERFAGMLKGI 233
+ R Q + + F A K + +++ + GQ GM
Sbjct: 199 ------------RSVTARRRQTDMSWADFVAEFKAKYFPQEALDPYAGQ-----GM---E 238
Query: 234 DEEHYMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQ 274
D++ M F+ GL+ ++ ++ + + +V+ A VE+
Sbjct: 239 DDQAQMRRFLRGLRPDLRVRCRVSQYATKAALVETAAEVEE 279
>At2g06890 putative retroelement integrase
Length = 1215
Score = 465 bits (1197), Expect = e-131
Identities = 337/1072 (31%), Positives = 522/1072 (48%), Gaps = 137/1072 (12%)
Query: 215 SVEEFVGQFERFAGMLKGI---DEEHYMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALM 271
SVEE+ + E ML+ D E + F+ L +I ++ + M+ KA++
Sbjct: 31 SVEEYYKEMETL--MLRADISEDREATLSRFLGDLNRDIQDRLETQYYVQIEEMLHKAIL 88
Query: 272 VEQ--KNLAVSKAGIGSTSRYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSS 329
EQ K + S++ GS + +++ R++++ +
Sbjct: 89 FEQQVKRKSSSRSSYGSGTIAKPTYQREERTSSYH-----------------------NK 125
Query: 330 GSVNERVGGKPARGGVYRKLTGEEMKEKLRKGECFRCDEKFGPNHICKNKQFRVMLLRDD 389
V+ R KP K E ++R C++C K + C NK RVM+L D+
Sbjct: 126 PIVSPRAESKPYAAVQDHKGKAEISTSRVRDVRCYKCQGKGHYANECPNK--RVMILLDN 183
Query: 390 GEEEEIETLEPLTEEIEEAMELKHLSLNSIQG--ISSRKSLKVWGK-------------- 433
GE E E + ++E EL QG + +R++L V K
Sbjct: 184 GEIEPEEEIPDSPSSLKENEELP------AQGELLVARRTLSVQTKTDEQEQRKNLFHTR 237
Query: 434 --LKGTAIVVLVDCGATHNFISQSLAREM---------ELQITETPAYTVEVGD------ 476
+ G +++D G+ N S+++ +++ ++++ + +G
Sbjct: 238 CHVHGKVCSLIIDGGSCTNVASETMVKKLGLKWLNDSGKMRVKNQVVVPIVIGKYEDEIL 297
Query: 477 --------GHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKAN 528
GH++ + + V GF F G G L + +
Sbjct: 298 CDVLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFEFKG--------GKTILVSMTPHEVY 349
Query: 529 FEELTLKFKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLEKEVAKAEE 588
+++ LK K K+ V+K +P K + + + Q +L + E +
Sbjct: 350 QDQIHLKQK---KEQVVK-QPNFFAKSGEVKSAYSSKQP-----MLLFVFKEALTSLTNF 400
Query: 589 TPEL---LKAVLSDFPALFAA--PTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNE 643
P L + ++L D+ +F P LPP R +H I GAS+PN YR + E
Sbjct: 401 APVLPSEMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKE 460
Query: 644 IEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDE 703
++ R+KDGSWR C D RA+N +TV PIP +D+
Sbjct: 461 LQ--------------------------RQKDGSWRMCFDCRAINNVTVKYCHPIPRLDD 494
Query: 704 LLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQS 763
+LDE+ + +FSKIDLKSGYHQI M D KTAF+T G YE+LVMPFGLT+APSTF
Sbjct: 495 MLDELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMR 554
Query: 764 LMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQ 823
LMN VLR + +V+FDDIL+YS ++ EH+ HL VL ++ + +L N KK F
Sbjct: 555 LMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDN 614
Query: 824 IEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLT 883
+ +LG V+SA V D +K++A+ WP PK + +R F GL G+YRRF KD+ I PLT
Sbjct: 615 LVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLT 674
Query: 884 QLLKKD-SFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEG 942
+++KKD F+W + ++AF++LK LT P L + +F K F +E DASG G+GAVL Q+
Sbjct: 675 EVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQDQ 734
Query: 943 KPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQV 1002
K +AF+S L + Y++EL A+VRA+QRW+HYL + F+I TD +SLK L QQ
Sbjct: 735 KLIAFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQK 794
Query: 1003 VGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVNDFEEWQTEMLQD 1062
+ + +W+ + + + I+YK GKDN ADA+S+R + + +K+ FE+ + D
Sbjct: 795 LNKRHARWVEFIETFAYVIKYKKGKDNVVADALSQRYTLLSTLNVKLMGFEQIKEVYETD 854
Query: 1063 PKLQAIVHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGF 1122
Q + + A Y +D LFY+ +L + S R + +E H L GH G
Sbjct: 855 HDFQEVYK--ACEKFASGRYFRQDKFLFYENRLCVPNCSLR-DLFVREAHGGGLMGHFGI 911
Query: 1123 FRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMD 1182
+T + W MK D++ C+TC++ K + P GL PLP+P W D+SMD
Sbjct: 912 AKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQAK-SKIQPNGLYTPLPIPKHPWNDISMD 970
Query: 1183 FIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHG 1234
F+ GLP++ GKD+I VV F P+ PF ++ L L E V + G
Sbjct: 971 FVMGLPRT-GKDSIFVVYSPFQIVYGFNPI-SPF---DLIPLPLSERVSIDG 1017
Score = 49.7 bits (117), Expect = 1e-05
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 1321 SPFQALYGREPPVLLQGTTIP-SKIAAVNDLQVGR--DELLSDLRANLLKSQDMMRAYAN 1377
SPFQ +YG P +P S+ +++ + ++ + R N+ + + AN
Sbjct: 988 SPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIHENARRNIEEKTKLYAKQAN 1047
Query: 1378 KKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLEL 1434
K RR+ +++GD V++ L R+ + KL PR GP+ I+ +I AY+L+L
Sbjct: 1048 KGRREQIFEVGDMVWIHL---RKERFPAQRKSKLMPRIDGPFKIIKRINDNAYQLDL 1101
>At3g31970 hypothetical protein
Length = 1329
Score = 440 bits (1131), Expect = e-123
Identities = 290/840 (34%), Positives = 430/840 (50%), Gaps = 103/840 (12%)
Query: 706 DEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLM 765
+ +G V S I + + I + +V KTAFRT GH+EF+VMPFGLTN P+ F LM
Sbjct: 554 ESVGQVAV-SDIRVVHEFEDIPIAEANVRKTAFRTRYGHFEFVVMPFGLTNIPTAFMRLM 612
Query: 766 NEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIE 825
N V + L + ++F DDIL+YS + EEH V ++ D + G +
Sbjct: 613 NSVFQEFLDEFVIIFIDDILVYSKSPEEHEVQ-------SEESDGEAAGAEV-------- 657
Query: 826 YLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQL 885
V+ D +K+EA+ WP P + +R FLGL GYY+RFVK + +A+P+T+L
Sbjct: 658 ---------GVSVDLEKIEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTKL 708
Query: 886 LKKD-SFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKP 944
KD F W P + F +LK LT P LA+P+ + +++ TDAS GL VL Q GK
Sbjct: 709 TGKDVPFVWSPECDEGFMSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQRGK- 767
Query: 945 LAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVG 1004
+ TD KSLK++ Q +
Sbjct: 768 ------------------------------------------VFTDHKSLKYIFTQPELN 785
Query: 1005 EGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVNDFEEWQTEMLQDPK 1064
Q +W+ ++ YD EI Y GK N ADA+SR+ ++ L M Q+P
Sbjct: 786 LRQRRWMELVADYDLEIAYHSGKANVVADALSRKRVGGSVEALVSEIGALRLCVMAQEPL 845
Query: 1065 -LQAIVH-DLI----VDPEAHKGYTLKDHR------------LFYKGKLVLSKQSSRIPI 1106
L+A+ DL+ + E +G + G++ + K
Sbjct: 846 GLEAVDRADLLTRVRLAQEKDEGLIAASKADGSEYQFAANGTILVHGRVCVPKDEELRRE 905
Query: 1107 LCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLL 1166
+ E HAS+ H + YR L W GMK D+ ++V ECD CQ K ++ P GLL
Sbjct: 906 ILSEAHASMFSIHPRATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAEHQVPGGLL 965
Query: 1167 QPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFL 1226
Q LP+ W ++MDF+ GLP S KD I V+VDRLTK AHF+ +R A +A ++
Sbjct: 966 QSLPILEWKWDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAVLLAKKYV 1025
Query: 1227 HEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEV 1286
E+V LHG P +IVSDRDS F S+FW+ GT+++ S+AYHPQTDGQ+E + LE
Sbjct: 1026 SEIVELHGVPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTLED 1085
Query: 1287 YLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAA 1346
LR R W L EF +N++Y S +M+PF+ALYGR L T + +
Sbjct: 1086 MLRMCVLDRGGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVGERSIY 1145
Query: 1347 VNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYR--RRSLA 1404
D + E + L+ N+ ++QD R+YA+K+RR++++++GD V+LK+ R RS++
Sbjct: 1146 GADYVLETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSIS 1205
Query: 1405 KKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRV-HPVFHVSLLKTAVGTNFQPQPLP 1463
+ KL+PRY GP+ IV ++G VAYRLELP R H VFHVS+L+ + + +
Sbjct: 1206 E---TKLTPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCL---HKDDEVL 1259
Query: 1464 AALNEDHE----LLVEPESVL--AVRETTMGQIEVL-IQWHSLPACENSWESAAQLHEAF 1516
A + ED + L P +L ++E +I ++ + W+ E +WE A++ +F
Sbjct: 1260 AKILEDLQPNMTLEARPVRILERRIKELRRKKIPLIKVLWNCDGVTEETWEPEARMKASF 1319
Score = 46.6 bits (109), Expect = 1e-04
Identities = 90/399 (22%), Positives = 154/399 (38%), Gaps = 82/399 (20%)
Query: 133 EDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQVT-----TWTKF 187
E+A SW ++E F E +V + L+G A + WW + +W F
Sbjct: 165 EEADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDA---HLWWRSVTARRRQAHMSWADF 221
Query: 188 -KEAMLERFQLTSNSSPFAALLALKQ-EGSVEEFVGQFER---FAGMLKGI-DEEHYMDI 241
E + F + A L L Q E SV E+ +F R +AG +G+ D++ M
Sbjct: 222 VAEFNAKYFPQEALDRMEARFLELTQGERSVREYEREFNRLLVYAG--RGMQDDQAQMRR 279
Query: 242 FVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTSRYNSSFKPPFRST 301
F+ GL+ ++ ++ + + +V+ A VE+ +L G+ + + KP
Sbjct: 280 FLRGLRPDLRVRCRVLQYATKAALVETAAEVEE-DLQRQVVGV------SPAVKP----- 327
Query: 302 TFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRKLTGEEMKEKLRKG 361
TQ V S G GKPA+G ++ KE+
Sbjct: 328 -----------------KKTQQQVAPSKG-------GKPAQG--------QKRKER---- 351
Query: 362 ECFRCDEKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEAMELKHLSLNSIQG 421
PN C Q + + + + + +L H++ + QG
Sbjct: 352 ------GHLRPN--CPKLQRMAVAVVQPAVQHGAQVQQ-------RVQQLAHIAA-APQG 395
Query: 422 ISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETPAY-TVEVGDGHVV 480
++R+ + K T VL D GA+H FI+ A ++ V+V G +
Sbjct: 396 YTTRE-IGSTSKRAITEAHVLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFL 454
Query: 481 KSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWL 519
G K + +QI G + D + + DV+LG++WL
Sbjct: 455 AVLGRAKGVDIQIAGESMPVDLIISPVELYDVILGMDWL 493
>At4g07850 putative polyprotein
Length = 1138
Score = 393 bits (1009), Expect = e-109
Identities = 229/600 (38%), Positives = 322/600 (53%), Gaps = 67/600 (11%)
Query: 830 VLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKD 889
V S V D +K++A+ WP PK + +R F GL G+YRRFV+D+ +A PLT+++KK+
Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590
Query: 890 -SFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFW 948
F+W +P+ AF+ALK LT P L++PDF K F +E DA G G+GAVL Q+ KP+A++
Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650
Query: 949 SATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQF 1008
S L + Y++EL A+VRA+Q W+HYL + F+I TD +SLK L QQ + +
Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710
Query: 1009 KWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVNDFEEWQTEMLQDPKLQAI 1068
+W+ + + + I+YK GKDN ADA+SRR
Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRR------------------------------ 740
Query: 1069 VHDLIVDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRR 1128
H+G+ LFY +L + S R + +E H L GH G +T +
Sbjct: 741 ----------HEGF------LFYDNRLCIPNSSLR-ELFIREAHGGGLMGHFGVSKTLKV 783
Query: 1129 LAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLP 1188
+ +W MK D+ C TC++ K + P GL PLP+P W D+SMDF+ GLP
Sbjct: 784 MQDHFHWPHMKRDVERMCERCTTCKQAKAKS-QPHGLCTPLPIPLHPWNDISMDFVVGLP 842
Query: 1189 KSN-GKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLF 1247
++ GKD+I VVVDR +K AHFIP A +A LF EVVRLHG P TIVSDRD+ F
Sbjct: 843 RTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKF 902
Query: 1248 LSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAE 1307
LS FWK L+ GT+L FS+ HPQTDGQTEVVNR L LR L + W CLP E
Sbjct: 903 LSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVE 962
Query: 1308 FWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLK 1367
F +N + + + K SPFQ +YG P L +P + + + ++ + ++ L+
Sbjct: 963 FAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLP-----LISIHLRKERFPNKRKSKLMP 1017
Query: 1368 SQD---MMRAYANKKRRDVDYQIGDEVFLKLQPYR-------RRSLAKKMNEKLSPRYYG 1417
D + N +D Q DE L+ P++ SL E+L P +G
Sbjct: 1018 RMDGSFKVLKRINDNAYSLDLQ--DETDLRSNPFQVGEDDVIMGSLDHGAKEQLEPEEFG 1075
Score = 68.2 bits (165), Expect = 4e-11
Identities = 36/74 (48%), Positives = 45/74 (60%)
Query: 607 PTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAEMLNAGIIRPSISPYSS 666
P LPP R +H I GAS+PN YR + E+EK V E++ G I S+SP +
Sbjct: 457 PEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERGHICESMSPCAV 516
Query: 667 PVILVRKKDGSWRF 680
PV+LV KKDGSWRF
Sbjct: 517 PVLLVPKKDGSWRF 530
Score = 55.5 bits (132), Expect = 2e-07
Identities = 99/427 (23%), Positives = 174/427 (40%), Gaps = 64/427 (14%)
Query: 59 LEAIVATMTRRRAGEHGDSDGEQ-ERRRMEEERTVNGGQPGSVRDEADA--RENLQRTAN 115
+EAI AT+T E+ E R +ER + S R+ + ++ RT++
Sbjct: 1 MEAITATLTATLTTNMAKMMDERFEAARSNQERKNRTMRNNSDREATLSYYSQSSTRTSH 60
Query: 116 AQTERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWW 175
+ R ++ P + I Y TE KV+ ALSW+
Sbjct: 61 RRQRRGQEERHPPRDNLANLKLRIPPFHEY------TEANKVKVAATEFYDYALSWWDQV 114
Query: 176 ETCNQ------VTTWTKFKEAMLERFQLTSNSSPFAALLALKQEGS--VEEFVGQFERFA 227
T + + TW + K M RF + L +G+ VEE+ + E
Sbjct: 115 VTTKRRLGDDSIETWNQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETL- 173
Query: 228 GMLKGIDEEHY---MDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGI 284
ML+ +E M F+ GL +I ++ ++L + KA+M E++ S
Sbjct: 174 -MLRADVQEECEATMSRFMGGLNRDILDRFEVIHYENLEELFHKAVMFEKQIKRRS---- 228
Query: 285 GSTSRYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGG 344
+ YNSS KP ++ +KSG + V+ ++ + GK
Sbjct: 229 -AKPSYNSS-KPSYQRE-----------EKSGFQKEYKPFVKPKVEEISSK--GK----- 268
Query: 345 VYRKLTGEEMKEKLRKGECFRCDEKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEE 404
E+ + R +CF+C C NK R+M++RD GE E E +P +
Sbjct: 269 -------EKEVTRTRDLKCFKCHGLGHYASECSNK--RIMIIRDSGEVES-EDEKPEESD 318
Query: 405 IEEA------MELKHLS-LNSIQGISSRKSL-KVWGKLKGTAIVVLVDCGATHNFISQSL 456
+EEA + ++ LS LN + + R++L +KG +++D G+ N S+++
Sbjct: 319 VEEAPKGELLVTMRVLSVLNKAEEQAQRENLFHTRCLIKGKVCSLIIDGGSCTNVASETM 378
Query: 457 AREMELQ 463
+++ L+
Sbjct: 379 VQKLGLE 385
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 363 bits (933), Expect = e-100
Identities = 197/512 (38%), Positives = 305/512 (59%), Gaps = 7/512 (1%)
Query: 472 VEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKANFEE 531
V G + + + +SV + G + D + L+ DV+LG++WL G K + +
Sbjct: 2 VRAAGGQAMYPTRLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWL---GKYKGHIDC 58
Query: 532 LTLKFKLGNKKVVLKGEPELLKKRASMNALVKAIQQQGEGYVLQYQMLE-KEVAKAEETP 590
+ + + +LK + + + + ++A + G+G + KEV + E
Sbjct: 59 HRERIQFERDEGMLKFQGIRTTSGSLVISAIQAERMLGKGCEAYLATITTKEVGASAELK 118
Query: 591 ELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQKNEIEKLVAE 650
++L ++++F +FAA + +PP R I L+ G + + PYR + E++K + E
Sbjct: 119 DIL--IVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAELKKQLEE 176
Query: 651 MLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGP 710
+L G IRPS SP+ +PV+ V+KKDGS+R C+DYR LNK+TV NK+P+P IDEL+D++G
Sbjct: 177 LLAKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGG 236
Query: 711 ARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLR 770
A+ FSKIDL SGYHQI ++ DV KTAFRT GH+EF+VMPFGLTNAP+ F +MN V R
Sbjct: 237 AQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFR 296
Query: 771 PVLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHV 830
L + ++F DDIL++S + E H HL VL+ + +H+L K F + + +LGHV
Sbjct: 297 DFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFLGHV 356
Query: 831 LSAGTVAADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKD- 889
+S V+ DP+K+ ++ WP P++ +R FLGL GYYRRFV + +A+PLT+L KD
Sbjct: 357 ISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDT 416
Query: 890 SFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWS 949
+F W +++F LK L P L +P+ + + + TDAS GLG VL Q+G +A+ S
Sbjct: 417 AFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYAS 476
Query: 950 ATLSDRSQAKSVYERELMAVVRAVQRWRHYLL 981
L + ++ E+ AVV A++ WR YL+
Sbjct: 477 RQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 250 bits (639), Expect = 4e-66
Identities = 146/417 (35%), Positives = 226/417 (54%), Gaps = 14/417 (3%)
Query: 1077 EAHKGYTLKDHR---------LFYKGKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYR 1127
E KG+TL + + G++ + + + +E H S H G + YR
Sbjct: 516 EEIKGWTLNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYR 575
Query: 1128 RLAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGL 1187
L +W GM+ D+ +VA+C TCQ K ++ P+GLLQ LP+ W ++MDF+ L
Sbjct: 576 DLKRYYHWVGMRKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRL 635
Query: 1188 PKS--NGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDS 1245
P + + + VVVDRLTK AHF+ + A +A ++ E++RLHG P +IVSDRD+
Sbjct: 636 PTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDT 695
Query: 1246 LFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPW 1305
F S FW + GT++ S+AYHPQTDGQ+E + LE LR W L
Sbjct: 696 RFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRL 755
Query: 1306 AEFWFNSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANL 1365
EF +N+++ S MSP++ALYGR L T + + + E + L+ L
Sbjct: 756 IEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKL 815
Query: 1366 LKSQDMMRAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKI 1425
++QD ++YANK+R+++++Q+GD V+LK Y+ +KLSPRY GPY ++ ++
Sbjct: 816 KEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTS-RKKLSPRYVGPYKVIERV 874
Query: 1426 GAVAYRLELPAHSRV-HPVFHVSLLKTAVGTNFQP-QPLPAALNEDHELLVEPESVL 1480
GAVAY+L+LP V H VFHVS L+ + + + +P L E+ + P ++
Sbjct: 875 GAVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESVEDIPPGLKENMTVEAWPVRIM 931
>At4g16910 retrotransposon like protein
Length = 687
Score = 340 bits (873), Expect = 3e-93
Identities = 223/684 (32%), Positives = 344/684 (49%), Gaps = 41/684 (5%)
Query: 878 IARPLTQLLKKDS-FQWGPSPQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGA 936
+A+P+TQL KD+ F W +++F LK LT P L +P+ + + + TDAS GLG
Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60
Query: 937 VLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKF 996
VL Q+G +A+ S L + + E+ AVV A++ WR YL G I TD KSLK+
Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120
Query: 997 LTEQQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRSSYCALSVLKVN------ 1050
+ Q + Q +WI ++ YD I Y PGK N DA+SR + +VN
Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLRTVVEAERNQVNLVNMMG 180
Query: 1051 ---------DFEEWQTEMLQDPKLQAIVHDLIVDPEAHKGYTLKDHR---------LFYK 1092
+ E L + + E KG+ + +
Sbjct: 181 TLHLNALSKEVEPLGLRAANQADLLSRIRSAQERDEEIKGWAQNNKTEYQSSNNGTIVVN 240
Query: 1093 GKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTC 1152
G++ + + KE H S H G + YR L +W GMK D+ +VA
Sbjct: 241 GRVCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVA----- 295
Query: 1153 QRNKFDNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKS--NGKDTILVVVDRLTKYAHFI 1210
K ++ P+G+LQ LP+P W + MDF+ GLP + + + VVVDRLTK AHF+
Sbjct: 296 ---KEEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFM 352
Query: 1211 PLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYH 1270
+ A +A ++ E+VRLHG P +IVSDRD+ F S FWK +V GT++ S+AYH
Sbjct: 353 AISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYH 412
Query: 1271 PQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGRE 1330
PQTDGQ+E + LE LR W L EF +N+++ S MSP++ALYGR
Sbjct: 413 PQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRA 472
Query: 1331 PPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDE 1390
L T + + + + + L+ L ++QD ++YANK+R+++++Q+GD
Sbjct: 473 GRTPLCWTPVGERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDL 532
Query: 1391 VFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAH-SRVHPVFHVSLL 1449
V+LK Y+ +KL PRY GPY ++ ++GAVAY+L+LP H VFHVS L
Sbjct: 533 VYLKAMTYKGAGRFTS-RKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQL 591
Query: 1450 KTAVGTNFQP-QPLPAALNEDHELLVEPESVL-AVRETTMGQIEVLIQ--WHSLPACENS 1505
+ + + + +P L E+ + P ++ +++ T G+ L++ W+ E +
Sbjct: 592 RKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGGREEYT 651
Query: 1506 WESAAQLHEAFPDFPLEDKVKHLG 1529
WE+ ++ FP++ E LG
Sbjct: 652 WETETKMKANFPEWFKEMGKDQLG 675
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 283 bits (724), Expect = 5e-76
Identities = 142/318 (44%), Positives = 212/318 (66%), Gaps = 7/318 (2%)
Query: 1215 PFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTD 1274
P + VAA F+ VV+LHG P +IVSD D +F+S FW+E +++S T+L S+AYHPQTD
Sbjct: 628 PLLSRSVAAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTD 687
Query: 1275 GQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVL 1334
GQTEVVNRC+E +LRC P++W + +PWAE+W+N+ ++ S M+PFQALYGR PP
Sbjct: 688 GQTEVVNRCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGR-PPSP 746
Query: 1335 LQGTTIPSKIAA-VNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFL 1393
+ + S + +N+ RDELL++L+ +L+ + + M+ A+ + RDV +Q+GD V L
Sbjct: 747 IPAYELGSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLL 806
Query: 1394 KLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRVHPVFHVSLLKTAV 1453
++QPYR+++L ++ ++KLS R+YGP+ + +K G VAYRL LP +R+HPVFHVSLLK V
Sbjct: 807 RIQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTRIHPVFHVSLLKPWV 866
Query: 1454 GTNFQPQPLPAALNEDHELLVEPESVLAVRETTMGQ---IEVLIQWHSLPACENSWESAA 1510
G L + EL ++P +VL VR + + ++L+QW L + +WE
Sbjct: 867 GDGEPDMGQLPPLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYD 926
Query: 1511 QLHEAFPDF--PLEDKVK 1526
QL +FP+F LEDKV+
Sbjct: 927 QLAASFPEFVLNLEDKVR 944
Score = 259 bits (662), Expect = 8e-69
Identities = 216/742 (29%), Positives = 326/742 (43%), Gaps = 152/742 (20%)
Query: 49 HERVEQRFRNLEAIVATMTRRRAGEHGDSDGEQERRRMEEERTVNGGQPGSVRDEADARE 108
H R+E+ +L + +T+R +G S G + R + + T N G+P + A
Sbjct: 40 HRRLEEALAHL---IEAVTQRESGGSAASRGSRRTERNQFQSTGNRGEPDNPFAAVTANN 96
Query: 109 NLQRTANAQTERWRKLDIPVFQGEEDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKA 168
N NA R KLD P F G D W+ K ++YF E+ V+ LDG A
Sbjct: 97 N-----NA-IARPSKLDFPRFHGG-DLTKWLSKAKQYFEYHEGPVEQAVRFTTFHLDGVA 149
Query: 169 LSWYQWWETCNQVTTWTKFKEAMLERFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAG 228
W+Q A L R + Q GS+ E+ +FE
Sbjct: 150 NGWWQ----------------ATLRRSA------------TIGQTGSLSEYQHEFEWLQN 181
Query: 229 MLKGIDEEHYMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTS 288
+ G +E + F+NGL I+ I++++P+SL ++ NL V G
Sbjct: 182 KVYGWTQEVLVGAFMNGLYYSISNGIRMFQPRSLREVI---------NLRVGWKGKSKDR 232
Query: 289 RYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRK 348
R R+T +V S +V + S+ + V R GV+
Sbjct: 233 RRK-------RATHHLHAVL--------SLTVWWCAKRQSNRRQRDSVRKNYERKGVWAY 277
Query: 349 LTGEEMKEKLRKGECFRCDEKFGPNHICKNKQFRVMLLRDDGEEEEIETLEPLTEEIEEA 408
++ + KGE DD EE T E E
Sbjct: 278 VSA------VMKGE------------------------NDDEAVEEEST------EAEGK 301
Query: 409 MELKHLSLNSIQGISSRKSLKVWGKLKGTAIVVLVDCGATHNFISQSLAREMELQITETP 468
E+ +L + S +++V + ++ L++ G+THNFI + R M L+ T T
Sbjct: 302 PEITLYALEGVDTTS---TIRVRATIHRNRLIALINSGSTHNFIGEKAVRGMNLKATTTK 358
Query: 469 AYTVEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWLAGLGDIKAN 528
+TV V +G + + + + V + G V + L G+D+ +G++WL+ LG N
Sbjct: 359 PFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPVTLYALPLMGLDLAMGVQWLSTLGPTLCN 418
Query: 529 FEELTLKFKLGNKKVVLKG---------EPELLKKRASMNALVKAIQQQGEGYVLQYQML 579
++E TL+F +V L G E + + K+A M + AI + +
Sbjct: 419 WKEQTLQFHWAGDEVRLMGIKPTGLRGVEHKTITKKARMGHTIFAI-------TMAHNSS 471
Query: 580 EKEVAKAEETPELLKAVLSDFPALFAAPTELPPQRRHDHAIHLKEGASIPNIRPYRYPHY 639
+ E +K ++ +F LF PT+LP +R H I LK+G N+RPYRY Y
Sbjct: 472 DPNTPDGE-----IKKLIEEFAGLFETPTQLPSERPIVHRIALKKGTDPVNVRPYRYAFY 526
Query: 640 QKNEIEKLVAEMLNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIP 699
QK+ EM AGIIRPS SP+ SPV+L R FPIP
Sbjct: 527 QKD-------EMSRAGIIRPSSSPFLSPVLLER-----------------------FPIP 556
Query: 700 VIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPS 759
+D++LDE+ A F+K+DL +GY Q+ M + D+ K AF+TH GHYE+LVMPFGL NAPS
Sbjct: 557 TVDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAFQTHNGHYEYLVMPFGLCNAPS 616
Query: 760 TFQSLMNEVLRPVLRKCALVFF 781
TFQ+LMNE+ P+L + F
Sbjct: 617 TFQALMNEIFWPLLSRSVAAKF 638
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 269 bits (687), Expect = 1e-71
Identities = 232/861 (26%), Positives = 378/861 (42%), Gaps = 116/861 (13%)
Query: 618 HAIHLKEGASIPNIRPYRYPHYQKNEI-EKLVAEMLNAGIIRP-SISPYSSPVILVRKKD 675
H IHL E S +I P R + E+ +K + ++L+AG+I P S S + SPV V KK
Sbjct: 889 HRIHL-ENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKG 947
Query: 676 G------------------SWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKI 717
G R C++YR LN + FP+P ID +L+ + + +
Sbjct: 948 GMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFL 1007
Query: 718 DLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCA 777
D SG+ QI + D KT F G + + MPFGL NAP+TFQ M + ++ +
Sbjct: 1008 DSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMV 1067
Query: 778 LVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVA 837
VF DD +Y + +++L +VL+ ++ +L +N +K F + LG +S +
Sbjct: 1068 EVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIE 1127
Query: 838 ADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLL-KKDSFQWGPS 896
D K++ M PK +K +R FLG G+YR F+KD+ K+ARPLT+LL K+ F +
Sbjct: 1128 VDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDE 1187
Query: 897 PQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRS 956
AF+ +K L P + P++ F + T+ D
Sbjct: 1188 CLTAFKLIKEALITAPIVQAPNWDFPFEI------------------------ITMDDAQ 1223
Query: 957 QAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSG 1016
+ E+EL+AVV A +++R YL+G I TD +L+ + ++ +WI L
Sbjct: 1224 VRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQE 1283
Query: 1017 YDFEIQYKPGKDNSAADAMSR-RSSYCALSVLKVNDFEEWQTEMLQDPKL--QAIVHDLI 1073
+D EI K G +N AD +SR R L + + + + L + KL A + +
Sbjct: 1284 FDMEIVDKKGIENGVADHLSRMRIEDEVLIDDSMPEEQLMAIQQLNEKKLPWYADHVNYL 1343
Query: 1074 VDPEAHKGYTLKDHRLFYKGKLVLSKQSSRIPILCKE------------------FHASL 1115
V E + + + F+K + LCK+ H
Sbjct: 1344 VSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIEGILLHCHGFA 1403
Query: 1116 LGGHSGFFRTYRR-LAAVVYWEGMKSDIRDFVAECDTCQRNKFDNLSPAGLLQPLPVPTQ 1174
GGH F+T + L A +W M D ++F+++CD+ F+N
Sbjct: 1404 YGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDS-----FENF-------------D 1445
Query: 1175 VWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFTAPEVAALFLHEVVRLHG 1234
VW +DF+G P S G ILV +D ++K+ I H A V LF + G
Sbjct: 1446 VW---GIDFMGPFPSSYGNKYILVAIDYVSKWVEAI-ASHTNDARVVLKLFKTIIFPRFG 1501
Query: 1235 FPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGS 1294
P ++SD F++ ++ L + G + K T GQ E+ NR ++ L GS
Sbjct: 1502 VPRIVISDGGKHFINKGFENLLKKHGVKHK--------TSGQVEISNREIKAILEKTVGS 1553
Query: 1295 RPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGR--EPPVLLQGTTIPSKIAAVNDLQV 1352
+ W L + + + + +PF LYG+ PV L+ + + D++
Sbjct: 1554 TRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKT 1613
Query: 1353 GRDE---LLSDLRANLLKSQDMMRAYA-------NKKRRDVDYQIGDEVFLKLQPYRRRS 1402
++ L+DL L++ + + Y +KK D+++GD+V L S
Sbjct: 1614 AEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLL------FNS 1667
Query: 1403 LAKKMNEKLSPRYYGPYPIVA 1423
+ KL R+ GP+ + A
Sbjct: 1668 RLRLFPGKLKSRWSGPFSVTA 1688
>At4g08100 putative polyprotein
Length = 1054
Score = 263 bits (672), Expect = 6e-70
Identities = 144/342 (42%), Positives = 203/342 (59%), Gaps = 29/342 (8%)
Query: 683 DYRALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLKSGYHQIMMKAEDVEKTAFRTHE 742
D RA+N ITV + PIP +D+ LD++ + +FSKIDLKSGYHQ MK D KTA +T +
Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586
Query: 743 GHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVFFDDILIYSLTMEEHVVHLTQVL 802
YE+LVMPFGLTNAP+TF LMN VLR + +V+FDDIL+YS +E HV+HL VL
Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646
Query: 803 QLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADPKKLEAMWLWPVPKDLKSLRGFL 862
L+ + L N KK F + +LG V+SA + D +K++A+ WP PK++
Sbjct: 647 DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPKNVSE----- 701
Query: 863 GLTGYYRRFVKDYGKIARPLTQLLKKDSFQWGPSPQQAFEALKHTLTEIPTLAVPDFSKV 922
KD G F+W + + AF+ALK LT +P+F K
Sbjct: 702 ----------KDIG--------------FKWEDAQENAFQALKEKLTNSSVPILPNFMKS 737
Query: 923 FVLETDASGTGLGAVLTQEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLG 982
F +E DASG G+GAVL Q+ KP+A++S L + Y++EL A+VRA+Q W+HYL
Sbjct: 738 FEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWP 797
Query: 983 RHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSGYDFEIQYK 1024
+ F+I TD +SLK L QQ + + +W+ + + + I+YK
Sbjct: 798 KKFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYK 839
Score = 63.5 bits (153), Expect = 9e-10
Identities = 92/337 (27%), Positives = 140/337 (41%), Gaps = 58/337 (17%)
Query: 123 KLDIPVFQGEE--DAY-SWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCN 179
KL IP F G + D Y W QK+E F + + KV+ ALSW+ T
Sbjct: 93 KLKIPAFHGTDNPDTYLEWEQKIELVFLCQECLQSNKVKIAATKFYNYALSWWDQLVTSR 152
Query: 180 QVT------TWTKFKEAMLERFQLTSNSSPFAALLALKQEGS--VEEFVGQFERFAGMLK 231
+ T TW + K M +RF + L +GS VEE+ + E ML+
Sbjct: 153 RRTRDYPIKTWNQLKFVMRKRFVPSYYHRELHQRLRNLVQGSKTVEEYFLEMETL--MLR 210
Query: 232 GI---DEEHYMDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQKNLAVSKAGIGSTS 288
D E M F+ GL EI ++ L M+ KA+M EQ+ + A T
Sbjct: 211 ADLQEDGEAVMSRFMGGLNREIQDRLETQHYVELEEMLHKAVMFEQQ-IKRKNARSSHTK 269
Query: 289 RYNSSFKPPFRSTTFQKSVQIDTGQKSGSGSVTQGTVQSSSGSVNERVGGKPARGGVYRK 348
SS KP ++QK +K G + ++ V+ ++ + G
Sbjct: 270 TNYSSGKP-----SYQKE------EKFGYQNDSKPFVKPKPVDLDPKGKG---------- 308
Query: 349 LTGEEMKEKLRKGECFRCDEKFGPNHI---CKNKQFRVMLLRDDGE-EEEIETLEPLTEE 404
KE + + RC + G H C NK R+M+ RD+GE E + E+ E +
Sbjct: 309 ------KEVITRARDIRCFKSQGLRHYASKCSNK--RIMVHRDNGEVESKDESAE--EDS 358
Query: 405 IEEAMELKHLSLNSIQGISSRKSLKVWGKLKGTAIVV 441
+EE +E + +G +R+SL V K + A +V
Sbjct: 359 MEEDVE------SPARGEFARRSLSVLTKAEEQANMV 389
Score = 58.9 bits (141), Expect = 2e-08
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 1317 SAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYA 1376
+ K SPF+ +YG +P L IP ++ + L + + L NL + YA
Sbjct: 853 ATKFSPFEIVYGFKPTSPLD--LIPLPLSERSSLDGKKKDDLVQQVLNLEARTKQYKKYA 910
Query: 1377 NKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPA 1436
NK R++V + GD+V++ L R++ + + KL PR GP+ ++ +I AY+L+L
Sbjct: 911 NKGRKEVIFNEGDQVWVHL---RKKRFPEVRSSKLMPRIDGPFKVLKRINNNAYKLDLQD 967
Query: 1437 HS--RVHPVFHVSLLKTAVGTNFQPQPLPAALNEDHELLVEPESVL 1480
S R +P F V N P ED E LV E+++
Sbjct: 968 TSDLRTNP-FQVG----EDDENMTNATKPLEPQEDEEQLVPEEALI 1008
>At4g07830 putative reverse transcriptase
Length = 611
Score = 259 bits (663), Expect = 6e-69
Identities = 186/606 (30%), Positives = 285/606 (46%), Gaps = 71/606 (11%)
Query: 940 QEGKPLAFWSATLSDRSQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTE 999
Q GK +A+ S L ++ E+ AV TD KSLK++
Sbjct: 2 QRGKVIAYGSRQLKKHEGNYPTHDLEMAAVF------------------TDHKSLKYIFT 43
Query: 1000 QQVVGEGQFKWISKLSGYDFEIQYKPGKDNSAADAMSRRS-------------------S 1040
Q + +W+ ++ YD EI Y PGK N DA+SR+
Sbjct: 44 QLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSVETLVIEIGALR 103
Query: 1041 YCALSVLKVNDFEEWQTEMLQDPKLQAIVHDLIVDPEAHKGYTLK---DHRLFYKGKLVL 1097
CA++ + QT++L +L + ++ +G+ + + + G++ +
Sbjct: 104 LCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIAASKAEGFEYQFAANGTILVHGRVCV 163
Query: 1098 SKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAVVYWEGMKSDIRDFVAECDTCQRNKF 1157
K + E HAS+ H G + YR L W GMK D+ ++V ECD CQ K
Sbjct: 164 PKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEECDVCQLVKI 223
Query: 1158 DNLSPAGLLQPLPVPTQVWTDVSMDFIGGLPKSNGKDTILVVVDRLTKYAHFIPLRHPFT 1217
++ LLQ LP+P W ++MDF+ GLP S KD I V+VDRLTK AHF+ +R
Sbjct: 224 EHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDG 283
Query: 1218 APEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFWKELFRVSGTQLKFSSAYHPQTDGQT 1277
A +A ++ E+V+LHG P +IVSDRDS F S+FW+ GT+++ S+AYHPQTDGQ+
Sbjct: 284 AAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQS 343
Query: 1278 EVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNSNYNRSAKMSPFQALYGREPPVLLQG 1337
E + LE LR W L EF +N++Y S M+PF+ LYGR P L
Sbjct: 344 ERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGR-PCRTLCW 402
Query: 1338 TTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMMRAYANKKRRDVDYQIGDEVFLKLQP 1397
T + + D E + L+ N+ ++Q+ R+YA+K+R+++++++GD V
Sbjct: 403 TQVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRSYADKRRKELEFEVGDSVSQDGHV 462
Query: 1398 YRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAHSRV-HPVFHVSLLKTAVGTN 1456
R ++G VA+RLEL R H VFHVS+L+ + +
Sbjct: 463 ARSEQ---------------------RVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKD 501
Query: 1457 FQP-QPLPAALNEDHELLVEPESVL-----AVRETTMGQIEVLIQWHSLPACENSWESAA 1510
+ +P L + L P VL +R + I+VL + E +WE A
Sbjct: 502 DEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLRNCDGV--TEETWEPEA 559
Query: 1511 QLHEAF 1516
+L F
Sbjct: 560 RLKARF 565
>At4g03650 putative reverse transcriptase
Length = 839
Score = 254 bits (650), Expect = 2e-67
Identities = 130/307 (42%), Positives = 191/307 (61%), Gaps = 2/307 (0%)
Query: 718 DLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCA 777
+LK ++ +A DV KTAFRT GH+EF+VMPFGLTNAP+ F LMN V + L +
Sbjct: 507 ELKKQLEDLLAEA-DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFV 565
Query: 778 LVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVA 837
++F DDIL+YS + EEH VHL +V++ + + L K F + ++ +LGH++SA V+
Sbjct: 566 IIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVS 625
Query: 838 ADPKKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKD-SFQWGPS 896
DP+K+EA+ WP P + +R FLGL GYYRRF+K + +A+P+T+L KD F W P
Sbjct: 626 VDPEKIEAIRDWPRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPE 685
Query: 897 PQQAFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEGKPLAFWSATLSDRS 956
++ F +LK LT P LA+P+ + +++ TDASG GLG L Q GK +A+ S L
Sbjct: 686 CEEGFVSLKEMLTSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHE 745
Query: 957 QAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLSG 1016
++ E+ AV+ A++ WR YL G + TD KSLK++ Q + Q +W+ ++
Sbjct: 746 GNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVAD 805
Query: 1017 YDFEIQY 1023
YD EI Y
Sbjct: 806 YDLEIAY 812
Score = 33.5 bits (75), Expect = 0.99
Identities = 40/156 (25%), Positives = 68/156 (42%), Gaps = 22/156 (14%)
Query: 133 EDAYSWIQKLERYFRLKGATEEEKVQAIMVALDGKALSWYQWWETCNQVTTWTKFKEAML 192
E+A SW ++ER F E +V + L+G A + WW + VT + +
Sbjct: 163 EEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDA---HLWWRS---VTARRRQADMSW 216
Query: 193 ERFQLTSNSSPF---------AALLALKQ-EGSVEEFVGQFER---FAGMLKGI-DEEHY 238
F N+ F A L L Q SV E+ +F R +AG +G+ D++
Sbjct: 217 ADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAG--RGMEDDQAQ 274
Query: 239 MDIFVNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQ 274
M F+ GL+ + ++ + + +V+ A VE+
Sbjct: 275 MRRFLRGLRPNLRVRCRVSQYATKAALVETAAEVEE 310
Score = 33.1 bits (74), Expect = 1.3
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 1260 GTQLKFSSAYHPQTDGQTE 1278
GT+++ S+ YHPQTDGQ+E
Sbjct: 818 GTKVQMSTTYHPQTDGQSE 836
Score = 32.0 bits (71), Expect = 2.9
Identities = 15/48 (31%), Positives = 25/48 (51%)
Query: 472 VEVGDGHVVKSKGVCKNLSVQIQGFVVTQDFFLFGLRGVDVVLGLEWL 519
V+V G + G K + +QI G + D + + DV+LG++WL
Sbjct: 358 VKVAGGQFLAVLGGAKGVDIQIAGESLPADLIISHVELYDVILGMDWL 405
>At1g20390 hypothetical protein
Length = 1791
Score = 215 bits (548), Expect = 1e-55
Identities = 174/641 (27%), Positives = 294/641 (45%), Gaps = 41/641 (6%)
Query: 441 VLVDCGATHNFISQSLAREMELQITETPAYTVEVG--DGHVVKSKGVCKNLSVQIQGFVV 498
VL+D G++ + I + + M + + + + DG V + G K L + + G +
Sbjct: 585 VLIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIK-LPIFVGGLIA 643
Query: 499 TQDFFLFGLRGV-DVVLGLEWLAGLGDIKANFEELTLKFKLGNKKVVLKGEPELLKKRAS 557
F + G V +V+LG W+ + I + + + +KF N L+ E S
Sbjct: 644 WVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQC-VKFPTHNGIFTLRAPKEAKTPSRS 702
Query: 558 MNALVKAIQQQGEGYVLQYQMLEKEVAK--------AEETPEL---LKAVLSDFPALFAA 606
E + + +M+ + + AE +P + L A+L FA
Sbjct: 703 YE----------ESELCRTEMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAW 752
Query: 607 PTELPPQRRHDHAIHLKEGASIPNIRPYRYPHYQ-----KNEIEKLVAEMLNAG-IIRPS 660
E + D AI E P +P + + + + V ++L AG II
Sbjct: 753 SIE--DMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVK 810
Query: 661 ISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPARVFSKIDLK 720
+ + ++V+KK+G WR CVDY LNK + +P+P ID L++ + S +D
Sbjct: 811 YPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAF 870
Query: 721 SGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRPVLRKCALVF 780
SGY+QI+M +D EKT+F T G Y + VM FGL NA +T+Q +N++L + + V+
Sbjct: 871 SGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVY 930
Query: 781 FDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVFGRGQIEYLGHVLSAGTVAADP 840
DD+L+ SL E+HV HL++ +++ + +K+N K FG E+LG+V++ + A+P
Sbjct: 931 IDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANP 990
Query: 841 KKLEAMWLWPVPKDLKSLRGFLGLTGYYRRFVKDYGKIARPLTQLLKKDS-FQWGPSPQQ 899
K++ A+ P P++ + ++ G RF+ P LLK+ + F W ++
Sbjct: 991 KQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEE 1050
Query: 900 AFEALKHTLTEIPTLAVPDFSKVFVLETDASGTGLGAVLTQEG----KPLAFWSATLSDR 955
AFE LK L+ P L P+ + L S + +VL +E +P+ + S +L +
Sbjct: 1051 AFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEA 1110
Query: 956 SQAKSVYERELMAVVRAVQRWRHYLLGRHFIIRTDQKSLKFLTEQQVVGEGQFKWISKLS 1015
V E+ +AVV + ++ R Y + TDQ L G KW +LS
Sbjct: 1111 ETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQPLRVALHSPSQSGR-MTKWAVELS 1169
Query: 1016 GYDFEIQYKPG-KDNSAADAMSRRSSYCALSVLKVNDFEEW 1055
YD + + +P K AD + A + N EEW
Sbjct: 1170 EYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEEW 1210
Score = 89.4 bits (220), Expect = 2e-17
Identities = 88/344 (25%), Positives = 144/344 (41%), Gaps = 36/344 (10%)
Query: 1082 YTL-KDHRLFYK--GKLVLSKQSSRIPILCKEFHASLLGGHSGFFRTYRRLAAV-VYWEG 1137
YTL K+H L G ++ + I + KE H G HSG +L + YW
Sbjct: 1410 YTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPT 1469
Query: 1138 MKSDIRDFVAECDTCQRNKFDNLSPAGLLQP--LPVPTQVWTDVSMDFIGGLPKSNGKDT 1195
M SD + F A+C+ CQR+ P LL+ P P W +MD +G +P S K
Sbjct: 1470 MISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRW---AMDIVGPMPASRQKRF 1526
Query: 1196 ILVVVDRLTKYAH---FIPLRHPFTAPEVAALFLHEVVRLHGFPTTIVSDRDSLFLSSFW 1252
ILV+ D TK+ + +R A +V ++ HG P I++D S F+S +
Sbjct: 1527 ILVMTDYFTKWVEAESYATIR----ANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSF 1582
Query: 1253 KELFRVSGTQLKFSSAYHPQTDGQTEVVNRCLEVYLRCLTGSRPRKWVTCLPWAEFWFNS 1312
+ +L S+ +PQ +GQ E N+ + L+ + W L + + +
Sbjct: 1583 ENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRT 1642
Query: 1313 NYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQDMM 1372
+ +PF YG E A+ +VG S LR +++ +
Sbjct: 1643 TPRSATDQTPFAHAYGME---------------AMAPAEVG----YSSLRRSMMVKNPEL 1683
Query: 1373 RAYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYY 1416
R D +I + ++Q Y + + AK N+K+ R++
Sbjct: 1684 NDRMMLDRLDDLEEIRNAALCRIQNY-QLAAAKHYNQKVHNRHF 1726
>At4g04230 putative transposon protein
Length = 315
Score = 179 bits (455), Expect = 9e-45
Identities = 87/168 (51%), Positives = 120/168 (70%)
Query: 652 LNAGIIRPSISPYSSPVILVRKKDGSWRFCVDYRALNKITVPNKFPIPVIDELLDEIGPA 711
++ G IR S+SP + PV+LV KKDG+WR C+D RA+N IT+ + PIP + ++LDE+ A
Sbjct: 125 IHKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGA 184
Query: 712 RVFSKIDLKSGYHQIMMKAEDVEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLRP 771
+FSK+DL+SGYHQ+ M+ D KTAF+T +G YE LVMPFGLTNAPSTF LMN+VLR
Sbjct: 185 IIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRS 244
Query: 772 VLRKCALVFFDDILIYSLTMEEHVVHLTQVLQLMDQHDLKINGKKSVF 819
+ K +V+FDDILIY+ + +H+ L +L+ + + L N KK F
Sbjct: 245 FIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTF 292
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,704,718
Number of Sequences: 26719
Number of extensions: 1551669
Number of successful extensions: 6437
Number of sequences better than 10.0: 202
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 5277
Number of HSP's gapped (non-prelim): 579
length of query: 1553
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1441
effective length of database: 8,326,068
effective search space: 11997863988
effective search space used: 11997863988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0318.12