BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0310b.12
         (1485 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g13940 putative retroelement pol polyprotein                       874  0.0
At2g16000 putative retroelement pol polyprotein                       847  0.0
At2g23330 putative retroelement pol polyprotein                       844  0.0
At1g70010 hypothetical protein                                        838  0.0
At1g57640                                                             824  0.0
At2g16670 putative retroelement pol polyprotein                       701  0.0
At4g14460 retrovirus-related like polyprotein                         683  0.0
At2g07420 putative retroelement pol polyprotein                       667  0.0
At1g44510 polyprotein, putative                                       660  0.0
At4g02960 putative polyprotein of LTR transposon                      643  0.0
At2g07010 putative retroelement pol polyprotein                       625  e-179
At2g06840 putative retroelement pol polyprotein                       560  e-159
At5g35820 copia-like retrotransposable element                        557  e-158
At4g10990 putative retrotransposon polyprotein                        528  e-150
At4g22040 LTR retrotransposon like protein                            513  e-145
At2g24660 putative retroelement pol polyprotein                       489  e-138
At2g20460 putative retroelement pol polyprotein                       488  e-138
At4g17450 retrotransposon like protein                                485  e-137
At4g23160 putative protein                                            457  e-128
At1g47650 hypothetical protein                                        452  e-127

>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  874 bits (2257), Expect = 0.0
 Identities = 533/1493 (35%), Positives = 816/1493 (53%), Gaps = 81/1493 (5%)

Query: 36   SFRLDGRNYLQWSELVRHTLISRQKISYIEETAPAE--TDPQYDTWREENSLIMTWFWYS 93
            S  L+G NY QW+  + + L +++K  +I  T P     DP Y+ W   NS+I+ W   S
Sbjct: 46   SVELNGDNYNQWATEMLNALQAKRKTGFINGTIPRPPPNDPNYENWTAVNSMIVGWIRTS 105

Query: 94   MIPEISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVTDYYGTLN 153
            + P++     F   A  +W +L Q +S    +   +++  ++ + +Q   +V +YYG L+
Sbjct: 106  IEPKVKATVTFISDAHLLWKDLKQRFSVGNKVRI-HQIRAQLSSCRQDGQAVIEYYGRLS 164

Query: 154  GLWIELDQYQNLKM------KCDSDSTTLNKFIEKARIFKFLSGLN-SEFDPIRVQILGK 206
             LW E + Y+ + +      +C + S    K  E+ +I +F+ GL+ S F  +   ++  
Sbjct: 165  NLWEEYNIYKPVTVCTCGLCRCGATSEP-TKEREEEKIHQFVLGLDESRFGGLCATLINM 223

Query: 207  EQFPSLSEVFS-IVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGRPNRDDRPNRD 265
            +  PSL E++S ++R E+   +V V ++  +     + +  +         +R D  +  
Sbjct: 224  DPLPSLGEIYSRVIREEQRLASVHVREQKEEAVGFLARREQLD------HHSRVDASSSR 277

Query: 266  DRFNGDDRFNRDDR----CTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQR-RANHT 320
                G  R N   +    C+ C R+GH K+ C+++ G  +  +  +  +G+  R R    
Sbjct: 278  SEHTGGSRSNSIIKGRVTCSNCGRTGHEKKECWQIVGFPDWWSERNGGRGSNGRGRGGRG 337

Query: 321  ASDMENDGEVPPVPPAEDVPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNA 380
            ++     G+V          S+     E     +  L K   +   T    S     L+ 
Sbjct: 338  SNGGRGQGQVMAAHATSSNSSVFPEFTEEHMRVLSQLVKEKSNSGSTSNNNSDR---LSG 394

Query: 381  LSTENDWIIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHLSPSLPL 440
             +   D I+D GA+ HMT   S L++    P    +  A+GS+      G + LS ++ L
Sbjct: 395  KTKLGDIILDSGASHHMTGTLSSLTNVVPVPPCP-VGFADGSKAFALSVGVLTLSNTVSL 453

Query: 441  KRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQH- 499
              VL VP L+  L+S+ KL +   C  TF  +    QD ++  +IG  +E+ G+Y L   
Sbjct: 454  TNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVYYLTDV 513

Query: 500  EESKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKVS--VESFHCDVCQFSK 557
              +K H  + +S     +W  H+RLGHP FS+L ++   LFSK S  V S  CDVC  +K
Sbjct: 514  TPAKIHTANVDS--DQALW--HQRLGHPSFSVLSSL--PLFSKTSSTVTSHSCDVCFRAK 567

Query: 558  HHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSE 617
              R  F  S NK  + F L+H DVWGP  +    GA +F+T +DD +R  W +L+ +KSE
Sbjct: 568  QTREVFPESINKTEECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSE 627

Query: 618  VFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGV 677
            V Q+  NF      QFGK +K +RSDNG E +    S +  +NG++H+ +CV  PQQNG 
Sbjct: 628  VRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMC--LSSYFRENGIIHQTSCVGTPQQNGR 685

Query: 678  AERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPS 737
             ERK+RH+L + RALLFQ ++P  +WGE++LTAAYLINR PS +LS  +P  V+     S
Sbjct: 686  VERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSSILSGRTPYEVLHG---S 742

Query: 738  VPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYIS 797
             P+ S  Q RVFG + +VH     + K   R+  CIF+GY   KKG+K Y        +S
Sbjct: 743  KPVYS--QLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVS 800

Query: 798  MDVTFQESESFYPNPQLQGGDTQEAESPELS-----VIPLLQ-----EPLMPSSIPITED 847
             DV F+E    +P   +          P +S      IP L+     + +    +  T D
Sbjct: 801  RDVIFREE--VFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSIDSVETERVVCTTD 858

Query: 848  SD--DDDNGPEQVPNQNDDNGLELVPDQNDDNGPELVPDQNNVDRFRIKYQRKV-KPVLI 904
                D      ++PNQ      E VPD    + P  V    + +         V  P+ +
Sbjct: 859  EVVLDTSVSDSEIPNQ------EFVPDDTPPSSPLSVSPSGSPNTPTTPIVVPVASPIPV 912

Query: 905  QQQDQPSDPEVSVPNPE------------PSNSYEHNLDDLPIALRKGKRSCAKYPISQY 952
                Q      + P P+            PS+ +    D    +   GK   + +P++ Y
Sbjct: 913  SPPKQRKSKRATHPPPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPGK---SLFPLTDY 969

Query: 953  VSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPND 1012
            VS    S  H+++++AI     P   +E ++ K W  AM  E+ AL+ N T  IV+ P  
Sbjct: 970  VSDAAFSSSHRAYLAAITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPG 1029

Query: 1013 KRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLA 1072
            K  +G +W++  KY SDGT++RYKARLV +G  Q  G DY ETFAPV +M TVR +L   
Sbjct: 1030 KVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNV 1089

Query: 1073 AHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWF 1132
            A   WE+ Q DV NAFLHGDLEEEVYM++PPG+   S  +KVC+L+K+LYGLKQ+PR WF
Sbjct: 1090 AANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRH-SHPDKVCRLRKSLYGLKQAPRCWF 1148

Query: 1133 GRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAV 1192
             + +++++  G+ QS  D++LF  +TRN     +L+YV+D++I GND    Q  +  L+ 
Sbjct: 1149 KKLSDSLLRFGFVQSYEDYSLF-SYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSR 1207

Query: 1193 QFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGS 1252
             F MKDLGKLKYFLG+EV+   +GIF+SQRKY LD++ ++G LG +P   P+EQNH + S
Sbjct: 1208 CFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLAS 1267

Query: 1253 SEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKA 1312
             +  L      Y+RLVG+L+YL HTRP+++Y V V++QFM +P+E H  A  R+++YLK 
Sbjct: 1268 DDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKG 1327

Query: 1313 SPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSS 1372
            SPG+G+L      L++EVY D+D+    + RRS + Y + LGG+ ++W++KKQ+ V+ SS
Sbjct: 1328 SPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSS 1387

Query: 1373 AEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEI 1432
            AEAE+RAM+  + E+  ++ +L +L I+   P RL+CD+K+AI IA NPV H+RTKHIE 
Sbjct: 1388 AEAEYRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIES 1447

Query: 1433 DRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHSP 1485
            D H +++ +   +I+TQ+V +  QLADV TK L   +F  L  KLG+ ++H+P
Sbjct: 1448 DCHSVRDAVRDGIITTQHVRTTEQLADVFTKALGRNQFLYLMSKLGVQNLHTP 1500


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  847 bits (2188), Expect = 0.0
 Identities = 523/1489 (35%), Positives = 801/1489 (53%), Gaps = 153/1489 (10%)

Query: 36   SFRLDGRNYLQWSELVRHTLISRQKISYIEETA--PAETDPQYDTWREENSLIMTWFWYS 93
            S RLD  NY  WS  +  +L ++ K  +I+ T   P E+D  +  W   NS++ +W   S
Sbjct: 76   SHRLDETNYGDWSVAMLISLDAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKSWLLNS 135

Query: 94   MIPEISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVTDYYGTLN 153
            + P+I R+ +    A +IW +L   ++   +L   Y L  ++ + +QGTLS+++YY  L 
Sbjct: 136  VSPQIYRSILRMNDASDIWRDLNSRFNVT-NLPRTYNLTQEIQDFRQGTLSLSEYYTRLK 194

Query: 154  GLWIELDQYQNLKMKCD-SDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQILGKEQFPSL 212
             LW +LD  + L   C    +  L +  E+A+I KFL+GLN  +  +R QI+ K+  PSL
Sbjct: 195  TLWDQLDSTEALDEPCTCGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSL 254

Query: 213  SEVFSIVRGEETRRTV--------------MVEDKSVDGSALASGKGPIKGSTSFGRPNR 258
             EV+ I+  + ++++               + +  S+D +      GP KG         
Sbjct: 255  GEVYHILDQDNSQQSFSNVVAPPAAFQVSEITQSPSMDPTVCYVQNGPNKG--------- 305

Query: 259  DDRPNRDDRFNGDDRFNRDDRCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQRRAN 318
              RP                 C++  R GH  E C+K +G         K+ G   ++  
Sbjct: 306  --RPI----------------CSFYNRVGHIAERCYKKHGFPPGFTPKGKA-GEKLQKPK 346

Query: 319  HTASDMENDGEVPPVPPAEDVPSLSKAELER-LRVFMDSLSK-PSGSCSLTMTGKS---- 372
              A+++    EV     +  V +LSK +L++ + +F   L   P  + +   T +S    
Sbjct: 347  PLAANVAESSEVNTSLESM-VGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLG 405

Query: 373  -----STFLSLNALSTEND------WIIDFGATDHMTPHPSHLSSYSTYPGKHYITVANG 421
                 ST+  +  L+          W+ID GAT H++   S  SS  T      + +  G
Sbjct: 406  ICFSPSTYSFIGILTVARHTLSSATWVIDSGATHHVSHDRSLFSSLDTSV-LSAVNLPTG 464

Query: 422  SQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLAT 481
               +I+G G + L+  + LK VL +P+   NL+SI  LT D+   V F  +    QDL  
Sbjct: 465  PTVKISGVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIK 524

Query: 482  GQIIGIAKEQDGLYCLQHEESKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFS 541
            G+++G  +    LY L   +      +        I + H+RLGH     L  +   L +
Sbjct: 525  GRMLGQGRRVANLYLLDVGDQSISVNA-----VVDISMWHRRLGHASLQRLDAISDSLGT 579

Query: 542  K--VSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTF 599
                +  S  C VC  +K  + +F  SN  C + FDL+H DVWGP S+  V G K+F+T 
Sbjct: 580  TRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTI 639

Query: 600  IDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTK 659
            +DD +R TW++L+K KSEV  +F  F   +  Q+   +K +RSDN  E     F+ F  +
Sbjct: 640  VDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPE---LKFTSFYAE 696

Query: 660  NGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPS 719
             G+V   +C + P+QN V ERK++H+L + RAL+FQ  VP   WG+ VLTA +LINR PS
Sbjct: 697  KGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPS 756

Query: 720  RVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYAS 779
            ++L N +P  ++T   P        Q R FGC  +       R K  PR+  C+F+GY S
Sbjct: 757  QLLMNKTPYEILTGTAPVYE-----QLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPS 811

Query: 780  DKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEPLMP 839
              KGYK     S  V+IS +V F E    +P  +  G ++             L  P++P
Sbjct: 812  GYKGYKLMDLESNTVFISRNVQFHEE--VFPLAKNPGSESSLK----------LFTPMVP 859

Query: 840  SSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNGPELVPDQNNVDRFRIKYQRKV 899
             S  I  D+    + P  +P+Q  D                 +P Q       I  QR  
Sbjct: 860  VSSGIISDTT---HSPSSLPSQISD-----------------LPPQ-------ISSQRVR 892

Query: 900  KPVLIQQQDQPSDPEVSVPNPEPSNSYEHNLDDLPIALRKGKRSCAKYPISQYVSTQNLS 959
            KP                  P   N Y  N            +S  KYPIS  +S   +S
Sbjct: 893  KP------------------PAHLNDYHCNT----------MQSDHKYPISSTISYSKIS 924

Query: 960  VQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCK 1019
              H  +I+ I  I +PT+  E    K+W +A++ E+ A++K  T +I   P  K+ VGCK
Sbjct: 925  PSHMCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCK 984

Query: 1020 WIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWEL 1079
            W++T+K+ +DG L+RYKARLVAKGYTQ  G+DY +TF+PVAKM T++++L ++A   W L
Sbjct: 985  WVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFL 1044

Query: 1080 QQFDVKNAFLHGDLEEEVYMEIPPGYDPTSG----RNKVCKLKKALYGLKQSPRAWFGRF 1135
            +Q DV NAFL+G+LEEE++M+IP GY    G     N V +LK+++YGLKQ+ R WF +F
Sbjct: 1045 KQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKF 1104

Query: 1136 TNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFE 1195
            +++++SLG+K++ GDHTLF+K   +G+  ++LVYV+D++IA   E     L +EL  +F+
Sbjct: 1105 SSSLLSLGFKKTHGDHTLFLK-MYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFK 1163

Query: 1196 MKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEE 1255
            ++DLG LKYFLG+EVA +  GI I QRKY L+LL+ TG L CKP+ VP+  N K+   + 
Sbjct: 1164 LRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDG 1223

Query: 1256 DLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPG 1315
            DL     QY+R+VGKL+YL+ TRPDI + V+ + QF   P+  HL A  R+LQY+K + G
Sbjct: 1224 DLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVG 1283

Query: 1316 RGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEA 1375
            +GL +  S  L+++ + D+D+A     RRSTT + MF+G +L++WRSKKQ+ V+RSSAEA
Sbjct: 1284 QGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEA 1343

Query: 1376 EFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRH 1435
            E+RA+A   CE++ +  +L  L+     P+ L+ D+ +AI IA NPV H+RTKHI++D H
Sbjct: 1344 EYRALALATCEMVWLFTLLVSLQASPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLDCH 1402

Query: 1436 FIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHS 1484
             ++E+L++  +   +V +  Q+AD+LTK L   +F  L  K+ +++I S
Sbjct: 1403 TVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSILNIFS 1451


>At2g23330 putative retroelement pol polyprotein
          Length = 1496

 Score =  844 bits (2181), Expect = 0.0
 Identities = 531/1503 (35%), Positives = 790/1503 (52%), Gaps = 98/1503 (6%)

Query: 33   LQGSFRLDGRNYLQWSELVRHTLISRQKISYIEETAPAET-DPQYDTWREENSLIMTWFW 91
            L  S  L   NY +WSE +++ L ++QK+ +I+ + P    DP+   W   NS+I+ W  
Sbjct: 33   LISSVVLKENNYAEWSEELQNFLRAKQKLGFIDGSIPKPAADPELSLWIAINSMIVGWIR 92

Query: 92   YSMIPEISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVTDYYGT 151
             S+ P I     F   A ++W NL + +S    +     L++++    Q    V  YYG 
Sbjct: 93   TSIDPTIRSTVGFVSEASQLWENLRRRFSVGNGVRKTL-LKDEIAACTQDGQPVLAYYGR 151

Query: 152  LNGLWIELDQYQN-LKMKCDSDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQILGKEQFP 210
            L  LW EL  Y++  + KC++ S  + K  E  R+ KFL GL+S F  IR  I   E  P
Sbjct: 152  LIKLWEELQNYKSGRECKCEAASD-IEKEREDDRVHKFLLGLDSRFSSIRSSITDIEPLP 210

Query: 211  SLSEVFSIVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGRPNRDDRPNRDDRFNG 270
             L +V+S V  EE           V   A+      ++ ST+              RF  
Sbjct: 211  DLYQVYSRVVREEQNLNASRTKDVVKTEAIGFS---VQSSTT-------------PRFRD 254

Query: 271  DDRFNRDDRCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQRR---ANHTASDMEND 327
                     CT+C R GH    CF ++G  +     +  +  P  R   +N   S     
Sbjct: 255  KSTLF----CTHCNRKGHEVTQCFLVHGYPDWWLEQNPQENQPSTRGRGSNGRGSSSGRG 310

Query: 328  GEVPPVPPAEDVPSLSKAELERLRVFMDSLSKPSGSCSLTMTGK-SSTFLSLNALSTEND 386
            G     P        + A+     V  D   + +   SL    + SS+   L+  +   D
Sbjct: 311  GNRSSAPTTRGRGRANNAQAAAPTVSGDGNDQIAQLISLLQAQRPSSSSERLSGNTCLTD 370

Query: 387  WIIDFGATDHMTPHPSHLSS-YSTYPGKHYITVANGSQNQITGCGNIHLSPSLPLKRVLH 445
             +ID GA+ HMT   S L   +   P    +T  +G  +Q T CG + L  S  L  VL 
Sbjct: 371  GVIDTGASHHMTGDCSILVDVFDITPSP--VTKPDGKASQATKCGTLLLHDSYKLHDVLF 428

Query: 446  VPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEES-KC 504
            VP     L+S+ KL +  +    F  +    QD     +IG  +E++G+Y      + + 
Sbjct: 429  VPDFDCTLISVSKLLKQTSSIAIFTDTFCFLQDRFLRTLIGAGEEREGVYYFTGVLAPRV 488

Query: 505  HQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKVSVESFH-CDVCQFSKHHRSTF 563
            H+ SS+   +  +W  H+RLGHP  S+L ++     S    +    CD C  SK  R  F
Sbjct: 489  HKASSDFAISGDLW--HRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVF 546

Query: 564  LPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFA 623
              SNNK  + F L+H DVWGP    + +GA +F+T +DD +R  W +LM  K+EV QL  
Sbjct: 547  PISNNKTMECFSLIHGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIK 606

Query: 624  NFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNR 683
            NF  M   QFGK +K  R+DNG E +    + +   +G++H+ +CVD PQQNG  ERK+R
Sbjct: 607  NFCAMSERQFGKQVKAFRTDNGTEFMC--LTPYFQTHGILHQTSCVDTPQQNGRVERKHR 664

Query: 684  HLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSG 743
            H+L + RA LFQ N+P  +WGE++LTA +LINR PS VL   +P  ++    PS  +   
Sbjct: 665  HILNVARACLFQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYDML-- 722

Query: 744  LQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQ 803
               R FGC  + H+   ++ K   R+ KC+FIGY   KK ++ Y   + +++ S DV F 
Sbjct: 723  ---RSFGCLCYAHIRPRNKDKFTSRSRKCVFIGYPHGKKAWRVYDLETGKIFASRDVRFH 779

Query: 804  ESESFYPNPQLQGGDTQEAESPELSVIPLLQEP-LMPSSIPITEDSDDDDNGPEQVPNQN 862
            E    YP        TQ          P++ +   +P S  +  DS + D+     P Q+
Sbjct: 780  ED--IYPYATA----TQSNVPLPPPTPPMVNDDWFLPISTQV--DSTNVDSSSSSSPAQS 831

Query: 863  DD-----NGLELVPDQNDDNGPE----LVPDQN---NVDRFRIKYQRKVKPVLIQ--QQD 908
                     ++  P  + +  PE    +VP  +   ++DR            L+   +  
Sbjct: 832  GSIDQPPRSIDQSPSTSTNPVPEEIGSIVPSSSPSRSIDRSTSDLSASDTTELLSTGESS 891

Query: 909  QPSDP--------------------EVSVPNPEPSNSYEHNLDD--------LPIALRKG 940
             PS P                    +          +  HN+          LP +L   
Sbjct: 892  TPSSPGLPELLGKGCREKKKSVLLKDFVTNTTSKKKTASHNIHSPSQVLPSGLPTSLSAD 951

Query: 941  KRSCAK-YPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALD 999
              S    YP+S +++    S  H +F++AI     P   ++ +  K+W +AM++E+ AL+
Sbjct: 952  SVSGKTLYPLSDFLTNSGYSANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKEIDALE 1011

Query: 1000 KNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPV 1059
             N T  I + P+ K+ +  KW+Y +KY SDGTL+R+KARLV  G  Q  G+D+ ETFAPV
Sbjct: 1012 ANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPV 1071

Query: 1060 AKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKK 1119
            AK+ TVR IL++AA  DWE+ Q DV NAFLHGDLEEEVYM +PPG+   S  +KVC+L+K
Sbjct: 1072 AKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFK-CSDPSKVCRLRK 1130

Query: 1120 ALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTL-LLVYVNDMIIAGN 1178
            +LYGLKQ+PR WF + + A+ ++G+ QS  D++LF    +NG   + +LVYV+D+I+AGN
Sbjct: 1131 SLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLF--SLKNGDTIIHVLVYVDDLIVAGN 1188

Query: 1179 DELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCK 1238
            +       + +L   F MKDLGKLKYFLG+EV+    G  +SQRKY LD++KETG LGCK
Sbjct: 1189 NLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCK 1248

Query: 1239 PMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQER 1298
            P  VPI  NHK+ S    +  +  QY+RLVG+ IYL+ TRPD++Y V ++SQFM  P   
Sbjct: 1249 PSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVA 1308

Query: 1299 HLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLV 1358
            H +A  R+++YLK SP +G+  +    L +  Y D+DY    + RRS + Y ++LG + +
Sbjct: 1309 HWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVVYLGDSPI 1368

Query: 1359 TWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIA 1418
            +W++KKQ+ V+ SSAEAE+RAMA  + EL  +K +L DL + + +PM+L CD+++AI IA
Sbjct: 1369 SWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDSEAAIHIA 1428

Query: 1419 HNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLG 1478
             NPV H+RTKHIE D H +++ +   LI+T+++ +  Q+AD+LTK LP   F  L   LG
Sbjct: 1429 ANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADLLTKSLPRPTFERLLSTLG 1488

Query: 1479 MID 1481
            + D
Sbjct: 1489 VTD 1491


>At1g70010 hypothetical protein
          Length = 1315

 Score =  838 bits (2166), Expect = 0.0
 Identities = 501/1449 (34%), Positives = 774/1449 (52%), Gaps = 167/1449 (11%)

Query: 57   SRQKISYIEETAPA--ETDPQYDTWREENSLIMTWFWYSMIPEISRNYMFFPTAKEIWNN 114
            ++ K+ +++ + P   + DP    WR  NS++ +W   S+  EI  + ++FPTA  IW +
Sbjct: 7    AKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAIWKD 66

Query: 115  LAQAYSKKQDLSACYELENKVFNSKQGTLSVTDYYGTLNGLWIELDQYQNLKMKCDSDST 174
            L   + K   L   Y+L  ++ + +QG L ++ Y+     LW EL   Q +        T
Sbjct: 67   LYTRFHKSS-LPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPR------T 119

Query: 175  TLNKFIEKA--RIFKFLSGLNSEFDPIRVQILGKEQFPSLSEVFSIVRGEETRRTVMVED 232
              +  IE+   R+  FL GLN  +D +R QIL K+  PSLSEVF+++  +ET+R+  +  
Sbjct: 120  VEDLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMIDQDETQRSARIST 179

Query: 233  KSVDGSALASGKGPIKGSTSFGRPNRDDRPNRDDRFNGDDRFNRDDR--CTYCKRSGHTK 290
                   + S   P+   +S                NGD  + + +R  C+YC R GH +
Sbjct: 180  TP----GMTSSVFPVSNQSS------------QSALNGDT-YQKKERPVCSYCSRPGHVE 222

Query: 291  EYCFKLYGRENVLARMSKS-KGAPQRRANHTASDMENDGEVPPVPPAEDVPSLSKAELER 349
            + C+K +G         K  K +    A   + ++ N+  V           L+ +++++
Sbjct: 223  DTCYKKHGYPTSFKSKQKFVKPSISANAAIGSEEVVNNTSV-------STGDLTTSQIQQ 275

Query: 350  LRVFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTENDWIIDFGATDHMTPHPSHLSSYST 409
            L  F+ S  +P                                     TP          
Sbjct: 276  LVSFLSSKLQPPS-----------------------------------TP---------V 291

Query: 410  YPGKHYITVANGSQNQITGC---GNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCA 466
             P  H I+V++   +  T C   G++HL   L L  VL +P+   NLLS+  LT+ + C 
Sbjct: 292  QPEVHSISVSSDPSSSSTVCPISGSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCR 351

Query: 467  VTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTSSE----SWNTSQIWLRHK 522
            + F  +  V QD     ++G+ K+   LY +  +      T S     S  +  +W  HK
Sbjct: 352  IWFDETSCVLQDATRELMVGMGKQVANLYIVDLDSLSHPGTDSSITVASVTSHDLW--HK 409

Query: 523  RLGHPPFSILRTMFPHL-FSKVSVES-FHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSD 580
            RLGHP    L+ M   L F K    + FHC VC  SK     F+  NNK ++PFDL+H D
Sbjct: 410  RLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHID 469

Query: 581  VWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRL 640
             WGP S+    G ++F+T +DD +R TWV+L+++KS+V  +   F  M+  QF   IK +
Sbjct: 470  TWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGV 529

Query: 641  RSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPK 700
            RSDN  E    NF++F    G+V   +C + PQQN V ERK++H+L + R+L FQ ++P 
Sbjct: 530  RSDNAPE---LNFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPI 586

Query: 701  FYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGH 760
             YWG+ +LTA YLINRLP+ +L +  P  V+T   P+         +VFGC  +      
Sbjct: 587  SYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYD-----HIKVFGCLCYASTSPK 641

Query: 761  HRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQ 820
             R K  PRA  C FIGY S  KGYK     +  + +S  V F E    +P     G D  
Sbjct: 642  DRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEE--LFP---FLGSDLS 696

Query: 821  EAES---PELSVIPLLQEPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDN 877
            + E    P+L+  P           P+   S D  N  +        + +E++P  N  N
Sbjct: 697  QEEQNFFPDLNPTP-----------PMQRQSSDHVNPSDS------SSSVEILPSANPTN 739

Query: 878  GPELVPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDPEVSVPNPEPSNSYEHNLDDLPIAL 937
                VP+ +     +  +++  KP  +Q                    Y H++       
Sbjct: 740  N---VPEPS----VQTSHRKAKKPAYLQDY------------------YCHSVV------ 768

Query: 938  RKGKRSCAKYPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHA 997
                 S   + I +++S   ++  + +F++ +D  + P++  E  K + W  AM  E   
Sbjct: 769  -----SSTPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDF 823

Query: 998  LDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFA 1057
            L+   T ++   P DKR +GC+WI+ +KY SDG+++RYKARLVA+GYTQ  GIDY+ETF+
Sbjct: 824  LEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFS 883

Query: 1058 PVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGR----NK 1113
            PVAK+N+V+++L +AA F   L Q D+ NAFL+GDL+EE+YM +P GY    G     N 
Sbjct: 884  PVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNA 943

Query: 1114 VCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDM 1173
            VC+LKK+LYGLKQ+ R W+ +F++ ++ LG+ QS  DHT F+K + +G    +LVY++D+
Sbjct: 944  VCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKIS-DGIFLCVLVYIDDI 1002

Query: 1174 IIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETG 1233
            IIA N++     L+ ++   F+++DLG+LKYFLG+E+  S +GI ISQRKY LDLL ETG
Sbjct: 1003 IIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETG 1062

Query: 1234 KLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMH 1293
            +LGCKP  +P++ +           V    Y+RL+G+L+YL+ TRPDI + V+ ++QF  
Sbjct: 1063 QLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSM 1122

Query: 1294 DPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFL 1353
             P++ HLQAV +ILQY+K + G+GL +  + +L ++VY +ADY      RRST+GYCMFL
Sbjct: 1123 APRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFL 1182

Query: 1354 GGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKS 1413
            G +L+ W+S+KQ+VV++SSAEAE+R+++    EL+ +   L +L++    P  LFCDN++
Sbjct: 1183 GDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEA 1242

Query: 1414 AISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFREL 1473
            AI IA+N V H+RTKHIE D H ++E+L   L    ++ + LQ+AD  TK L    F  L
Sbjct: 1243 AIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYPSHFHRL 1302

Query: 1474 TCKLGMIDI 1482
              K+G+++I
Sbjct: 1303 ISKMGLLNI 1311


>At1g57640
          Length = 1444

 Score =  824 bits (2129), Expect = 0.0
 Identities = 513/1499 (34%), Positives = 792/1499 (52%), Gaps = 145/1499 (9%)

Query: 39   LDGRNYLQWSELVRHTLISRQKISYIEETAPAETD--PQYDTWREENSLIMTWFWYSMIP 96
            L   NY +W+   +  L SR+K  +++ T P   D  P  + W   N+L+++W   ++  
Sbjct: 38   LKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDWLTINALLVSWMKMTIDS 97

Query: 97   EISRNYMFFPTAKEIWNNLAQAYS---------KKQDLSACYELENKVFNSKQGTLSVTD 147
            E+  N      A+++W  + + +S          K DL+ C          KQ  ++V  
Sbjct: 98   ELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATC----------KQEGMTVEG 147

Query: 148  YYGTLNGLWIELDQYQNLKM-KCD----SDSTTLNKFIEKARIFKFLSGLN-SEFDPIRV 201
            YYG LN +W  ++ Y+ L++ KC     +  T   K+ E   + ++L GLN ++F  IR 
Sbjct: 148  YYGKLNKIWDNINSYRPLRICKCGRCICNLGTDQEKYREDDMVHQYLYGLNETKFHTIRS 207

Query: 202  QILGKEQFPSLSEVFSIVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGRPNRDDR 261
             +  +   P L EV++IVR EE     MV ++S +              T+F    R   
Sbjct: 208  SLTSRVPLPGLEEVYNIVRQEED----MVNNRSSNEERT--------DVTAFAVQMRPRS 255

Query: 262  PNRDDRFNGDDRFNRDDRCTYCKRSGHTKEYCFKLYG-----------RENVLARMSKSK 310
                ++F   ++      CT+C R GH+ E CF L G           + N     S+ +
Sbjct: 256  EVISEKFANSEKLQNKKLCTHCNRGGHSPENCFVLIGYPEWWGDRPRGKSNSNGSTSRGR 315

Query: 311  G--APQRRANHTASDMENDGEVPPVPPAEDVPS-LSKAELERLRVFMDSLSKPSGSCSLT 367
            G   P            N     P P +E V   ++ ++ + +    D   +  G   L 
Sbjct: 316  GRFGPGFNGGQPRPTYVNVVMTGPFPSSEHVNRVITDSDRDAVSGLTDEQWR--GVVKLL 373

Query: 368  MTGKSSTFLSLNALSTEN-------DWIIDFGATDHMTPHPSHLSSYSTYPGKHYITVAN 420
              G+S      NA  T++        WI+D GA+ HMT +   LS   +      I +A+
Sbjct: 374  NAGRSDN--KSNAHETQSGTCSLFTSWILDTGASHHMTGNLELLSDMRSM-SPVLIILAD 430

Query: 421  GSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLA 480
            G++      G + L   L LK V +V +L ++L+S+ ++  + +C               
Sbjct: 431  GNKRVAVSEGTVRLGSHLILKSVFYVKELESDLISVGQMMDENHCV-------------- 476

Query: 481  TGQIIGIAKEQDGLYCLQHEESKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLF 540
                                 +  H +    ++   +W  H+RLGH    I+  +   L 
Sbjct: 477  -------------------NAAAVHTSVKAPFD---LW--HRRLGHASDKIVNLLPRELL 512

Query: 541  S--KVSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVT 598
            S  K  +E+  CD C  +K  R TF  S+N+    F L+H DVWGP    + SGA++F+T
Sbjct: 513  SSGKEILENV-CDTCMRAKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRAPSYSGARYFLT 571

Query: 599  FIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLT 658
             +DD +R  WV+LM DKSE  +   +F  ++  QF   IK +RSDNG E +     E+  
Sbjct: 572  IVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKIVRSDNGTEFLCMR--EYFL 629

Query: 659  KNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLP 718
              G+ HE +CV  P QNG  ERK+RH+L I RAL FQ  +P  +WGE +L+AAYLINR P
Sbjct: 630  HKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTP 689

Query: 719  SRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYA 778
            S +L   SP  ++   + + P  S L  RVFG   + H   H   K   R+ +C+F+GY 
Sbjct: 690  SMLLQGKSPYEML---YKTAPKYSHL--RVFGSLCYAHNQNHKGDKFAARSRRCVFVGYP 744

Query: 779  SDKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEPLM 838
              +KG++ +    ++ ++S DV FQE+E  +P  ++   +  E    +    P ++E + 
Sbjct: 745  HGQKGWRLFDLEEQKFFVSRDVIFQETE--FPYSKMSCNEEDERVLVDCVGPPFIEEAIG 802

Query: 839  PSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNG-PELVPDQNNVDRFRIKYQR 897
            P +I I  +  +   GP             ++P+ N ++  P      +++D F      
Sbjct: 803  PRTI-IGRNIGEATVGPNVATGP-------IIPEINQESSSPSEFVSLSSLDPF------ 848

Query: 898  KVKPVLIQQQDQPSDPEVSVP-----------NPEPSNSYEHNLDDLPIALRKGKRSCAK 946
             +    +Q  D P       P            P    ++  N   +  ++     S + 
Sbjct: 849  -LASSTVQTADLPLSSTTPAPIQLRRSSRQTQKPMKLKNFVTNTVSVE-SISPEASSSSL 906

Query: 947  YPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKI 1006
            YPI +YV     +  H++F++A+ +   PT+  E + DK W +AM+ E+ +L  N T  I
Sbjct: 907  YPIEKYVDCHRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSI 966

Query: 1007 VEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR 1066
            V  P  KR +G KW+Y +KYRSDG ++RYKARLV  G  Q  G+DYDETFAPVAKM+TVR
Sbjct: 967  VNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVR 1026

Query: 1067 IILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQ 1126
            + L +AA  DW + Q DV NAFLHGDL+EEVYM++P G+      +KVC+L K+LYGLKQ
Sbjct: 1027 LFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQ-CDDPSKVCRLHKSLYGLKQ 1085

Query: 1127 SPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNL 1186
            +PR WF + ++A+   G+ QS  D++LF  +  +G    +LVYV+D+II+G+        
Sbjct: 1086 APRCWFSKLSSALKQYGFTQSLSDYSLF-SYNNDGIFVHVLVYVDDLIISGSCPDAVAQF 1144

Query: 1187 RKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQ 1246
            +  L   F MKDLG LKYFLG+EV+ + QG ++SQRKYVLD++ E G LG +P   P+EQ
Sbjct: 1145 KSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQ 1204

Query: 1247 NHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRI 1306
            NHK+  S   L    ++Y+RLVG+LIYL  TRP+++Y V  ++QFM +P++ H  A  R+
Sbjct: 1205 NHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNAAIRV 1264

Query: 1307 LQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQN 1366
            ++YLK++PG+G+L   +  L +  + D+DYA   + RRS TGY + LG   ++W++KKQ 
Sbjct: 1265 VRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQP 1324

Query: 1367 VVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDR 1426
             V+RSSAEAE+RAMA    EL+ +K +L DL + +   MR+F D+KSAI+++ NPVQH+R
Sbjct: 1325 TVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHER 1384

Query: 1427 TKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHSP 1485
            TKH+E+D HFI++ +   +I+T +VPS  QLAD+LTK L  +  R    KLG++D+H+P
Sbjct: 1385 TKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKLGILDVHAP 1443


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  701 bits (1810), Expect = 0.0
 Identities = 462/1332 (34%), Positives = 699/1332 (51%), Gaps = 119/1332 (8%)

Query: 181  EKARIFKFLSGLNSE-FDPIRVQILGKEQFPSLSEVFSIVRGEET--RRTVMVEDKSVDG 237
            E+ ++ +FLSGL+   F  +R  ++ +     L EV++IVR EE   R    V D   + 
Sbjct: 93   EEDKVHEFLSGLDDALFRTVRSSLVSRIPVQPLEEVYNIVRQEEDLLRNGANVLDDQREV 152

Query: 238  SALASGKGPIKGSTSFGRPNRDDRPNRDDRFNGDDRFNRDDRCTYCKRSGHTKEYCFKLY 297
            +A A+   P       GR              GD++ ++   C +C RSGH  E C+ + 
Sbjct: 153  NAFAAQMRP---KLYQGR--------------GDEK-DKSMVCKHCNRSGHASESCYAVI 194

Query: 298  GRENVLARMSKSKGAPQRRANHTASDMENDGEVPPVPPAEDVPSLSKAELERLRVFMDSL 357
            G         +S+    R    T S                VP+    E           
Sbjct: 195  GYPEWWGDRPRSRSLQTRGRGGTNSSGGRGRGAAAYANRVTVPNHDTYE----------- 243

Query: 358  SKPSGSCSLTMTGKSSTFLSLNALSTENDW-----IIDFG---ATDHMTPHPSHLSSYST 409
                 + +LT   +      +N L T++ W     I++ G   AT+ +T     L     
Sbjct: 244  ---QANYALTDEDRDG----VNGL-TDSQWRTIKSILNSGKDAATEKLTDMDPIL----- 290

Query: 410  YPGKHYITVANGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTF 469
                  I +A+G +      G + L  +L +  V +V +  ++L+SI +L  +  C +  
Sbjct: 291  ------IVLADGRERISVKEGTVRLGSNLVMISVFYVEEFQSDLISIGQLMDENRCVLQM 344

Query: 470  FHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTSSESWNTSQIWLRHKRLGHPPF 529
                 V QD  +  ++G  +   G +  +  E     T  E  N  ++W  H R+GHP  
Sbjct: 345  SDRFLVVQDRTSRMVMGAGRRVGGTFHFRSTEIAASVTVKEEKNY-ELW--HSRMGHPAA 401

Query: 530  SILRTMFPHLFSKVSVESFH----CDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPS 585
             ++ ++ P   S VSV S H    CDVC  +K  R++F  S NK  + F+L++ D+WGP 
Sbjct: 402  RVV-SLIPE--SSVSVSSTHLNKACDVCHRAKQTRNSFPLSINKTLRIFELIYCDLWGPY 458

Query: 586  SISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNG 645
               + +GA++F+T IDD +R  W++L+ DKSE      NFF M   QF   IK +RSDNG
Sbjct: 459  RTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFNVKIKTVRSDNG 518

Query: 646  KE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGE 705
             E +    ++F  + GV+HE +CV  P++N   ERK+RHLL + RAL FQ N+P  +WGE
Sbjct: 519  TEFLC--LTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGE 576

Query: 706  AVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKL 765
             VLTAAYLINR PS VL++ +P   +    P          RVFG   + H       K 
Sbjct: 577  CVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFD-----HLRVFGSLCYAHNRNRGGDKF 631

Query: 766  DPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQEAESP 825
              R+ +C+F+GY   +KG++ +       ++S DV F E E  +     Q    +E E+ 
Sbjct: 632  AERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEFPFRISHEQNVIEEEEEAL 691

Query: 826  ELSVIP-LLQEPL-----MPSSIPITEDSDDDDNGPEQVPNQNDDNGL--ELVPDQNDDN 877
               ++  L++E +        + PI   S    +        +  + L  E+VP      
Sbjct: 692  WAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPSATSSRSEHSTSSPLDTEVVPTPATST 751

Query: 878  GPELVPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDP---EVSVPNPEPSNSYEHNLDDLP 934
                 P  ++    +     + KP   Q    P+ P     S  N  P  + +  + +  
Sbjct: 752  TSASSP--SSPTNLQFLPLSRAKPTTAQAVAPPAVPPPRRQSTRNKAPPVTLKDFVVNTT 809

Query: 935  IALRK-GKRSCAKYPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNE 993
            +      K +   Y + +   T+  S  H +++ AID                       
Sbjct: 810  VCQESPSKLNSILYQLQKRDDTRRFSASHTTYV-AID----------------------- 845

Query: 994  EMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYD 1053
               A ++N T  I + P  KR +G +W+Y VK+ SDG+++RYKARLVA G  Q  G DY 
Sbjct: 846  ---AQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYG 902

Query: 1054 ETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNK 1113
            ETFAPVAKM TVR+ L +A   +WE+ Q DV NAFLHGDL EEVYM++PPG++  S  NK
Sbjct: 903  ETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFE-ASHPNK 961

Query: 1114 VCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDM 1173
            VC+L+KALYGLKQ+PR WF + T A+   G++QS  D++LF     + ++ +L +YV+D+
Sbjct: 962  VCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKIL-IYVDDL 1020

Query: 1174 IIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETG 1233
            II GN +   Q  ++ LA  F MKDLG LKYFLG+EVA S  GI+I QRKY LD++ ETG
Sbjct: 1021 IITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETG 1080

Query: 1234 KLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMH 1293
             LG KP   P+EQNHK+G S   L     +Y+RLVG+LIYL+ TR D+A+ V ++++FM 
Sbjct: 1081 LLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQ 1140

Query: 1294 DPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFL 1353
            +P+E H  A  R+++YLKA PG+G+  ++S    +  + D+D+AG  + RRS TGY +  
Sbjct: 1141 EPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQF 1200

Query: 1354 GGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKS 1413
            G + ++W++KKQ+ V++SSAEAE+RAM+    ELL +K +L  L + +  PM + CD+KS
Sbjct: 1201 GDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKS 1260

Query: 1414 AISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFREL 1473
            AI IA NPV H+RTKHIEID HF++++    +I+ ++V +  QLAD+ TK L  + F   
Sbjct: 1261 AIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFSAF 1320

Query: 1474 TCKLGMIDIHSP 1485
              KLG+ ++++P
Sbjct: 1321 RIKLGIRNLYAP 1332


>At4g14460 retrovirus-related like polyprotein
          Length = 1489

 Score =  683 bits (1763), Expect = 0.0
 Identities = 397/1140 (34%), Positives = 608/1140 (52%), Gaps = 147/1140 (12%)

Query: 371  KSSTFLSLNALSTENDWIIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCG 430
            ++ T  +L      + WIID GA+ H+    S L+ +                      G
Sbjct: 466  QNHTLSALQKFLPSDAWIIDSGASSHVC---SDLAMFRELKSVS---------------G 507

Query: 431  NIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKE 490
             +H++  L L  VLHVP    NL+S+  L + ++C+  F+    + Q+L+ G +IG  + 
Sbjct: 508  TVHITQKLILHNVLHVPDFKFNLMSVSSLVKTISCSAHFYVDCCLIQELSQGLMIGRGRL 567

Query: 491  QDGLYCLQHEESK--------CHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSK 542
               LY L+ E +         C  T S   N   +W  H+RLGHP   +L+         
Sbjct: 568  YHNLYILETENTSPSTSTPAACLFTGSVL-NDGHLW--HQRLGHPSSVVLQ--------- 615

Query: 543  VSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDD 602
                          K  R  ++  NN  + PFDLVH D+WGP SI ++ G ++F+T +DD
Sbjct: 616  --------------KLKRLAYISHNNLASNPFDLVHLDIWGPFSIESIEGFRYFLTVVDD 661

Query: 603  CTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGV 662
            CTR TWV+++++K +V  +F  F  ++ TQF   IK +RSDN  E     F+E + ++G+
Sbjct: 662  CTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAPE---LGFTEIVKEHGM 718

Query: 663  VHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVL 722
            +H  +C   PQQN V ERK++H+L + RALLFQ N+P  YW + V TA +LINRLPS +L
Sbjct: 719  LHHFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSPLL 778

Query: 723  SNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKK 782
            +N SP  ++ +  P   +        FGC  FV  + H R K  PRA  C+F+GY S  K
Sbjct: 779  NNKSPYELILNKQPDYSLLKN-----FGCLCFVSTNAHERTKFTPRARACVFLGYPSGYK 833

Query: 783  GYKCYHPPSRRVYISMDVTFQE-------------SESFYPNPQLQGGDTQEAESPELSV 829
            GYK     S  V +S +V F+E             +   +PN  L       A    +  
Sbjct: 834  GYKVLDLESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSILP----LPAPLHFVET 889

Query: 830  IPLLQEPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNGPELVPDQNNVD 889
            +PL+ E    S IP T DS   DN      +        ++P  ++    ++  D N V 
Sbjct: 890  MPLIDED---SLIPTTTDSRTADNHASSSSSALPS----IIPPSSNTETQDI--DSNAVP 940

Query: 890  RFRIKYQRKVKPVLIQQQDQPSDPEVSVPNPEPSNSYEHNLDDLPIALRKGKRSCAKYPI 949
              R K   +  P  + +      P +S   P  S+   H L ++  A     +    YPI
Sbjct: 941  ITRSKRTTRA-PSYLSEYHCSLVPSISTLPPTDSSIPIHPLPEIFTA--SSPKKTTPYPI 997

Query: 950  SQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEK 1009
            S  VS    +   QS+I A ++   P +  + +K +KWI+   EE+ A++ N T  +   
Sbjct: 998  STVVSYDKYTPLCQSYIFAYNTETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESL 1057

Query: 1010 PNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIIL 1069
            P DK  VGCKW++T+KY  DGT++RYKARLVA+G+TQ  GID+ +TF+PVAK+ + +++L
Sbjct: 1058 PPDKNVVGCKWVFTIKYNPDGTVERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMML 1117

Query: 1070 SLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGR----NKVCKLKKALYGLK 1125
             LAA   W L Q DV +AFLHGDL+EE++M +P GY P +G     N VC+L K++YGLK
Sbjct: 1118 GLAAITGWTLTQMDVSDAFLHGDLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLK 1177

Query: 1126 QSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQN 1185
            Q+ R W+ RF  A                            LVY++D++IA N++ E +N
Sbjct: 1178 QASRQWYKRFVAA----------------------------LVYIDDIMIASNNDAEVEN 1209

Query: 1186 LRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIE 1245
            L+  L  +F++KDLG  ++FLG+                          LGCKP  +P++
Sbjct: 1210 LKALLRSEFKIKDLGPARFFLGL--------------------------LGCKPSSIPMD 1243

Query: 1246 QNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDR 1305
                +         +   Y++L+G+L+YL+ TRPDI Y V  +SQF+  P + HLQA  +
Sbjct: 1244 PTLHLVRDMGTPLPNPTAYRKLIGRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHK 1303

Query: 1306 ILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQ 1365
            +L+Y+KA+PG+GL++    ++ +  ++DAD+A     RRS +G+C++LG +L++W+SKKQ
Sbjct: 1304 VLRYIKANPGQGLMYSADYEICLNGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQ 1363

Query: 1366 NVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHD 1425
             V +RSS E+E+R+MAQ  CE++ ++ +L DL I    P +LFCDNKSA+  + NPV H+
Sbjct: 1364 AVASRSSTESEYRSMAQATCEIIWLQQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHE 1423

Query: 1426 RTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHSP 1485
            RTKHIEID H +++++ +  +   +VP+  Q AD+LTK L    F  L  ++ +  +  P
Sbjct: 1424 RTKHIEIDCHTVRDQIKAGNLKALHVPTENQHADILTKALHPGPFHHLLRQMSLSSLFLP 1483



 Score =  107 bits (268), Expect = 4e-23
 Identities = 69/263 (26%), Positives = 124/263 (46%), Gaps = 21/263 (7%)

Query: 43  NYLQWSELVRHTLISRQKISYIEETA--PAETDPQYDTWREENSLIMTWFWYSMIPEISR 100
           ++  W   +   L  R K+ +I  T   P E    +  W   N ++ TW   S+  +I +
Sbjct: 56  DFHSWRRSILMALNVRNKLGFINGTITKPPEDHRDFGAWSRCNDIVSTWLMNSVDKKIGQ 115

Query: 101 NYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVTDYYGTLNGLWIELD 160
           + ++  T + IWNNL   + K+ D    +++E K+   +QG++ ++ YY  L  LW E  
Sbjct: 116 SLLYIATVQGIWNNLLSRF-KQDDAPRIFDIEQKLSKIEQGSMDISTYYTALLTLWEEHR 174

Query: 161 QYQNLKM----KCDSDSTTLNKFI-EKARIFKFLSGLNSEFDPIRVQILGKEQFPSLSEV 215
            Y  L +    +C+ D+    + + +++R+ KFL  LN  FD  R  IL  +  P++ E 
Sbjct: 175 NYVELPVCTCGRCECDAAVKWEHLQQRSRVTKFLKELNEGFDQTRRHILMLKPIPTIKEA 234

Query: 216 FSIVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGRPNRDDRPNRDDRFNGDDRFN 275
           F++V  +E +R V    + VD  A  +     +   ++       RP            N
Sbjct: 235 FNMVTQDERQRNVKPLTR-VDSVAFQNTSMINEDENAYVAAYNTVRP------------N 281

Query: 276 RDDRCTYCKRSGHTKEYCFKLYG 298
           +   CT+C + GHT + C+K++G
Sbjct: 282 QKPICTHCGKVGHTIQKCYKVHG 304


>At2g07420 putative retroelement pol polyprotein
          Length = 1664

 Score =  667 bits (1720), Expect = 0.0
 Identities = 425/1275 (33%), Positives = 657/1275 (51%), Gaps = 145/1275 (11%)

Query: 39   LDGRNYLQWSELVRHTLISRQKISYI-EETAPAETDPQY---------DTWREENSLIMT 88
            L G NYL W+   + TL SR   ++I    AP+E   +          + W +E+  ++ 
Sbjct: 13   LKGVNYLLWARTTKTTLCSRGLWAHILTSEAPSEATIREGMEIVHVGEEKWFQEDQSVLA 72

Query: 89   WFWYSMIPEISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVTDY 148
                S+   +   Y +  TAKE+W  L   +  + +LS  +E++  + +  QG +  T +
Sbjct: 73   LLQNSLEASLLEAYSYCETAKELWETLFNVFGNQSNLSRVFEVKKAINDLSQGDMEFTQH 132

Query: 149  YGTLNGLWIELDQYQNLKMKCDSDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQILGKEQ 208
            +G    LW EL+  +   +    D   L +  E+ ++F  L  L+S ++ +   +L  ++
Sbjct: 133  FGKFRSLWAELEMLRPNTL----DPKVLIERREQDKVFGLLLTLSSTYNDLIKHLLRADK 188

Query: 209  FPSLSEVFSIVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGRPNRDDRPNRDDRF 268
             P+L EV S ++ E+  R                                          
Sbjct: 189  LPNLEEVCSQIQKEQANR------------------------------------------ 206

Query: 269  NGDDRFNRDDR---CTYCKRSGHTKEYCFKLY-----GRENVLARMSKSKGAPQRRANHT 320
             G+ +++ + +   C +CKRSGHTKE C+ L+     GR    A     +    +  + T
Sbjct: 207  -GNYKYDNNKKALWCEHCKRSGHTKEKCWTLHPHLRPGRREPRANQVTGENFGTQEQSGT 265

Query: 321  ASDMENDGEVPPVPPAEDVPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNA 380
             S+    G    +  + D+   S      L+  + +L + SG              S +A
Sbjct: 266  -SNQHLGGNGAAMAASSDLVRRSD-----LKALIKALKESSGK-------------SYHA 306

Query: 381  LSTENDWIIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHLSPSLPL 440
            LS+    IID GA+ HM      +S+    P    + +ANG +  + G G++ L      
Sbjct: 307  LSSLKPLIIDSGASHHMISDSKLISNIE--PALGNVVIANGDRIPVKGVGDLDLFDKS-- 362

Query: 441  KRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQ-- 498
             +  ++P  ++NLLS+ K T DLNC   F  +   FQD+ T +++G    +DGLY L+  
Sbjct: 363  SKAFYMPTFTSNLLSVKKATTDLNCYAIFGPNEVHFQDIETSRVLGQGVTKDGLYVLEDT 422

Query: 499  --------HEESKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKVSVESFHC 550
                    H  S     +SESW        H RLGHP    L+ + P      S ++  C
Sbjct: 423  KPSVPLSSHFSSILGNANSESW--------HARLGHPHSRALKLLLP----STSFKNDEC 470

Query: 551  DVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVF 610
            + C   KH +S F  S+    + FDL+HSDVW    +S     K+FVTFID+ ++ TW  
Sbjct: 471  EACILGKHCKSVFPKSSTIYEKCFDLIHSDVWTSPCLSR-ENHKYFVTFIDEKSKFTWFT 529

Query: 611  LMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVD 670
            L+  K  V + F NF   +   +   IK LRSDN  E  +  F + L K+G++H+ +C  
Sbjct: 530  LLPSKDRVLEAFTNFQTYVTNHYDAKIKILRSDNRGEYTSHAFKQHLNKHGIIHQTSCPY 589

Query: 671  APQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLV 730
             PQQNGVAERKNRHL+E+ R ++F  NVPK +W + V++A YLIN+ P+++L + SP  V
Sbjct: 590  TPQQNGVAERKNRHLMEVRRVMMFHTNVPKHFWIDGVVSACYLINQTPTKILLDSSPFEV 649

Query: 731  MTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPP 790
            +    P +        RVFGC  FV + G  R KL P++ K +FIGY+ ++KGYKCY   
Sbjct: 650  LNKVKPFIN-----HLRVFGCVCFVLISGEQRNKLQPKSTKGMFIGYSINQKGYKCYVLE 704

Query: 791  SRRVYISMDVTFQESESFYPNPQLQG-GDTQEAESPELSVIPLLQEPLMPSSIPITEDSD 849
            +R+V IS DV F ES+S+Y     +   D  ++ S   + + ++ E L  S+I  T+ + 
Sbjct: 705  TRKVLISRDVKFLESKSYYDKKNWEDIQDLTDSPSDRATNLRIILERLGVSNIQ-TQTTP 763

Query: 850  DDDNGPE---QVPNQNDDNGLELVPDQNDDNGPELVPDQNNVDRFRIKYQRKVKPVLIQQ 906
               N PE   Q  N  ++   E   ++      EL+  +        K Q K   +L   
Sbjct: 764  RTSN-PETITQPENMEEEEEEEEEEEEKQGKEQELITLEETESS---KVQEKDTSLLNDD 819

Query: 907  QDQPSDPEVSVPNPEPSNSYEHNLDDLPIALRKGKR----------SCAKYPISQYVSTQ 956
                ++ E      E SNS E           K KR          +  ++PI    +  
Sbjct: 820  NGHTNNQE------EDSNSREEPRIPRRSEHLKDKRVYYNNQVYFDNVVEHPIQVVCTLA 873

Query: 957  NLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTV 1016
            +L  +HQ F   +D   +P + +E +  + W  A+  E  A++ N T    E P  K+ V
Sbjct: 874  HLPEEHQVFFGKVDQHWIPQTYEEAITHQVWRDAIAAEKQAMENNHTWDEDELPRGKKVV 933

Query: 1017 GCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFD 1076
              KW++ +KY+SDG ++RYKARLVA+G+TQTYG DY +TFAPVAK++TVR++LSL  + +
Sbjct: 934  TSKWVFAIKYKSDGEIERYKARLVARGFTQTYGEDYLDTFAPVAKLHTVRVVLSLTTNLE 993

Query: 1077 WELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFT 1136
            W+L Q DVKNAFL G+LEE+VYM+ PPG +  +  NKV KLKKA+YGLKQSPRAW+ + +
Sbjct: 994  WDLWQMDVKNAFLQGELEEKVYMKPPPGLEDINAPNKVFKLKKAIYGLKQSPRAWYHKLS 1053

Query: 1137 NAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEM 1196
              ++  G+K+S+ D+TLF   ++ G + ++LVYV+D+II+GND++  Q+ +  L   F++
Sbjct: 1054 TTLMGRGFKRSEADNTLFTLPSQKG-IVVILVYVDDIIISGNDKVGIQDTKTFLKSVFDI 1112

Query: 1197 KDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKI---GSS 1253
            KDLG+LKYFLG+EV  SK+G+F+SQRKY LDLL + GKLG KP   P+E ++K    G  
Sbjct: 1113 KDLGELKYFLGIEVCRSKEGLFLSQRKYTLDLLAQVGKLGVKPAKTPLEDDYKAKRKGEH 1172

Query: 1254 EEDLRVHKAQYQRLV 1268
            +        +Y+RLV
Sbjct: 1173 DNKPFEDATRYRRLV 1187



 Score = 64.3 bits (155), Expect = 5e-10
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 1404 PMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTK 1463
            P+ + CDN++AI IA N V H+RTKHIE+D H ++E++   +I   Y     QLADV TK
Sbjct: 1196 PIPMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQVQLGVILPHYTEGEEQLADVFTK 1255

Query: 1464 G 1464
            G
Sbjct: 1256 G 1256


>At1g44510 polyprotein, putative
          Length = 1459

 Score =  660 bits (1703), Expect = 0.0
 Identities = 455/1512 (30%), Positives = 713/1512 (47%), Gaps = 160/1512 (10%)

Query: 38   RLDGRNYLQWSELVRHTLISRQKISYIEETA--PAET---------DPQYDTWREENSLI 86
            +L   NYL WS  +   L       Y++ +   P ET         +P +  W+ ++ LI
Sbjct: 32   KLTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPPETTTINSVVSANPSFTLWKRQDKLI 91

Query: 87   MTWFWYSMIPEISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVT 146
             +    ++ P +         + +IW+ L   Y+K        +L  ++    +GT ++ 
Sbjct: 92   FSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPS-YGHIKQLRQQIQRLTKGTKTID 150

Query: 147  DYYGTLNGLWIELDQYQNLKMKCDSDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQILGK 206
            +Y   +      LDQ   L    + +           ++   L GL  E+  +  QI GK
Sbjct: 151  EY---VQSHTTRLDQLAILGKPMEHEE----------QVEHILKGLPEEYKTVVDQIEGK 197

Query: 207  EQFPSLSEVFSIVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGRPNRDDRPNRDD 266
            +  P+++E+   +   E++   ++ D+    S+       ++        N++   NR  
Sbjct: 198  DNTPTITEIHERLINHESK---LLSDEVPPSSSFPMSANAVQQRNFNNNCNQNQHKNRYQ 254

Query: 267  RFNGDDRFNRDDRCTYCKRSGHTKEYCFKLY-GRENVLARMSKS-KGAPQRRANHTASDM 324
                ++  N + + +   +SG   +  FK Y G+  + +    S +  PQ +A    +  
Sbjct: 255  GNTHNNNTNTNSQPSTYNKSG---QRTFKPYLGKCQICSVQGHSARRCPQLQAMQLPASS 311

Query: 325  ENDGEVPPVPPAEDVPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTE 384
                   P  P  +                                     L++ +    
Sbjct: 312  SAHSPFTPWQPRAN-------------------------------------LAIGSPYAA 334

Query: 385  NDWIIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHL---SPSLPLK 441
            N W++D GAT H+T   + LS +  Y G  Y+ +A+G+   I   G+  L   +  L L 
Sbjct: 335  NPWLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQNRDLALH 394

Query: 442  RVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLY--CLQH 499
            +VL+VP +  NL+S+++L      +V FF +    +DL TG ++   + +D LY   + +
Sbjct: 395  KVLYVPDIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTN 454

Query: 500  EESKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKVSVESFH---CDVCQFS 556
              +    TS     T   W  H RLGHP  SIL T+       VSV S +   C  C  +
Sbjct: 455  PPATALFTSPSPKTTLSSW--HSRLGHPSASILNTLLSKFSLPVSVASSNKTSCSDCLIN 512

Query: 557  KHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKS 616
            K H+  F  S+   + P + + +DVW    IS+    K+++  +D  TR TW++ ++ KS
Sbjct: 513  KSHKLPFATSSIHSSSPLEYIFTDVWTSPIISH-DNYKYYLVLVDHYTRYTWLYPLQQKS 571

Query: 617  EVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNG 676
            +V   F  F  ++  +F   I+ L SDNG E +     +FL  NG+ H  +    P+ NG
Sbjct: 572  QVKATFIAFKALVENRFQAKIRTLYSDNGGEFIA--LRDFLVSNGISHLTSPPHTPEHNG 629

Query: 677  VAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFP 736
            ++ERK+RH++E    LL Q +VP+ YW  A  TA YLINR+P+ VL   SP       F 
Sbjct: 630  LSERKHRHIVETGLTLLTQASVPREYWTYAFATAVYLINRMPTPVLCLQSP---FQKLFG 686

Query: 737  SVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYI 796
            S P    L  RVFGC  F  +  + R KL+ R+ +C+F+GY+  +  Y C    + R+Y 
Sbjct: 687  SSPNYQRL--RVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLTQTAYLCLDVDNNRLYT 744

Query: 797  SMDVTFQESESFYP-----NPQLQGG-----DTQEAESPELSVIPL----LQEPLMPSSI 842
            S  V F ES   YP       Q Q       ++  + SP  S  P     LQ P  P+S 
Sbjct: 745  SRHVMFDEST--YPFAASIREQSQSSLVTPPESSSSSSPANSGFPCSVLRLQSP--PASS 800

Query: 843  PITEDSDDDDNGPEQVPNQNDD---------NGLELVPDQNDDNGPELVPDQNNVDRFRI 893
            P T       N     P Q                L P  +  N     P +N  +    
Sbjct: 801  PETPSPPQQQNDSPVSPRQTGSPTPSHHSQVRDSTLSPSPSVSNSEPTAPHENGPEP--- 857

Query: 894  KYQRKVKPVLIQQQDQPSDPEVS-VPNPEPSNSYEHNLDDLPIALRKGKRSCAKYPISQ- 951
                       + Q  P+ P +  +PNP P  +   +++  P+     K +    P +Q 
Sbjct: 858  -----------EAQSNPNSPFIGPLPNPNPETNPSSSIEQRPV----DKSTTTALPPNQT 902

Query: 952  -YVSTQNLSVQ-----HQSFISAIDSI------------------RVPTSVQEVLKDKKW 987
               +T N   Q     HQ    + ++I                    P +V + LKDKKW
Sbjct: 903  TIAATSNSRSQPPKNNHQMKTRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDKKW 962

Query: 988  IQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQT 1047
              AM++E  A  +N T  +V     +  VGC+W++ +KY  +G +D+YKARLVAKG+ Q 
Sbjct: 963  RFAMSDEFDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQ 1022

Query: 1048 YGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDP 1107
            YG+DY ETF+PV K  T+R++L +A   +W L+Q DV NAFL G L EEVYM  PPG+  
Sbjct: 1023 YGVDYAETFSPVIKATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVD 1082

Query: 1108 TSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLL 1167
                + VC+L+KA+YGLKQ+PRAW+      ++++G+  S  D +LFI ++    L  LL
Sbjct: 1083 KDRPSHVCRLRKAIYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFI-YSHGTTLLYLL 1141

Query: 1168 VYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLD 1227
            VYV+D+I+ G+D      +   LA +F +KD   L YFLG+E   +  G+ + QRKY+ D
Sbjct: 1142 VYVDDIIVTGSDHKSVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTD 1201

Query: 1228 LLKETGKLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSV 1287
            LL +   L  KP+  P+  + K+           ++Y+ +VG L YL+ TRPDIA+ V+ 
Sbjct: 1202 LLAKHNMLDAKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNR 1261

Query: 1288 VSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTT 1347
            +SQFMH P   H QA  R+L+YL  +   G+    S  + +  ++DAD+AG   D  ST 
Sbjct: 1262 LSQFMHQPTSDHWQAAKRVLRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTN 1321

Query: 1348 GYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRL 1407
             Y ++LG N ++W SKKQ  V+RSS E+E+RA+A    E+  +  +L +L I+      +
Sbjct: 1322 AYVIYLGRNPISWSSKKQRGVSRSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTI 1381

Query: 1408 FCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPL 1467
            FCDN  A  I  NPV H R KHI +D HF++  + S  +   +V +  QLAD LTK L  
Sbjct: 1382 FCDNIGATYICANPVFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADALTKSLSR 1441

Query: 1468 ERFRELTCKLGM 1479
              F     K+G+
Sbjct: 1442 PHFLSARSKIGV 1453


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  643 bits (1659), Expect = 0.0
 Identities = 450/1529 (29%), Positives = 714/1529 (46%), Gaps = 191/1529 (12%)

Query: 38   RLDGRNYLQWSELVRHTLISRQKISYIEETAPA-----------ETDPQYDTWREENSLI 86
            +L   NYL WS  V       +   +++ + P              +P Y  WR ++ LI
Sbjct: 25   KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLI 84

Query: 87   MTWFWYSMIPEISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVT 146
             +    ++   +        TA +IW  L + Y+                          
Sbjct: 85   YSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPS----------------------- 121

Query: 147  DYYGTLNGLWI--ELDQYQNLKMKCDSDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQIL 204
              YG +  L      DQ   L    D D           ++ + L  L  ++ P+  QI 
Sbjct: 122  --YGHVTQLRFITRFDQLALLGKPMDHDE----------QVERVLENLPDDYKPVIDQIA 169

Query: 205  GKEQFPSLSEVFSIVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGRPNRDDRPNR 264
             K+  PSL+E+   +   E++              LA     +   T+    +R+   NR
Sbjct: 170  AKDTPPSLTEIHERLINRESK-------------LLALNSAEVVPITANVVTHRNTNTNR 216

Query: 265  DDRFNGDDRFNRDDRCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQRRANHTASDM 324
            +    GD+R                       Y   N  +   +   +  R  N      
Sbjct: 217  NQNNRGDNRN----------------------YNNNNNRSNSWQPSSSGSRSDNRQPKPY 254

Query: 325  ENDGEVPPVPPAEDVPSLSKAELERLRVFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTE 384
                ++        V   S     +L  F  + ++   +   T     +  L++N+    
Sbjct: 255  LGRCQIC------SVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRAN-LAVNSPYNA 307

Query: 385  NDWIIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHL---SPSLPLK 441
            N+W++D GAT H+T   ++LS +  Y G   + +A+GS   IT  G+  L   S SL L 
Sbjct: 308  NNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLN 367

Query: 442  RVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLY------ 495
            +VL+VP +  NL+S+++L      +V FF +    +DL TG  +   K +D LY      
Sbjct: 368  KVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIAS 427

Query: 496  --CLQHEESKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKV---SVESFHC 550
               +    S C + +  SW        H RLGHP  +IL ++  +    V   S +   C
Sbjct: 428  SQAVSMFASPCSKATHSSW--------HSRLGHPSLAILNSVISNHSLPVLNPSHKLLSC 479

Query: 551  DVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVF 610
              C  +K H+  F  S    ++P + ++SDVW  S I ++   +++V F+D  TR TW++
Sbjct: 480  SDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLY 538

Query: 611  LMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVD 670
             +K KS+V   F  F  ++  +F   I  L SDNG E V     ++L+++G+ H  +   
Sbjct: 539  PLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPH 596

Query: 671  APQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLV 730
             P+ NG++ERK+RH++E+   LL   +VPK YW  A   A YLINRLP+ +L   SP   
Sbjct: 597  TPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSP--- 653

Query: 731  MTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPP 790
                F   P    L  +VFGC+ +  +  ++R KL+ ++ +C F+GY+  +  Y C H P
Sbjct: 654  FQKLFGQPPNYEKL--KVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIP 711

Query: 791  SRRVYISMDVTF-------------------QESES---------------FYPNPQLQG 816
            + R+Y S  V F                   Q S+S                 P P   G
Sbjct: 712  TGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLG 771

Query: 817  GDTQEAESPELSVIPLLQEPLMPSSIP--------ITEDSDDDDNGPEQV----PNQNDD 864
                 +  P  S  PL    +  S++P         +E +    NGP+        QN +
Sbjct: 772  PHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSN 831

Query: 865  NGLELVPDQNDDNGPELVPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDPEVSVPNPEPSN 924
            +   ++ + N ++     P+QN+             P+       P  P  S    EP++
Sbjct: 832  SNSPILNNPNPNSPSPNSPNQNS-------------PLPQSPISSPHIPTPSTSISEPNS 878

Query: 925  SYEHNLDDLPIALRKGKRSCAKYPISQYVSTQNLSV----------QHQSFISAIDSIRV 974
                +    P+          +      V+T +++           Q  S+ +++ +   
Sbjct: 879  PSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSE 938

Query: 975  PTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRT-VGCKWIYTVKYRSDGTLD 1033
            P +  + +KD +W QAM  E++A   N T  +V  P    T VGC+WI+T K+ SDG+L+
Sbjct: 939  PRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLN 998

Query: 1034 RYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDL 1093
            RYKARLVAKGY Q  G+DY ETF+PV K  ++RI+L +A    W ++Q DV NAFL G L
Sbjct: 999  RYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTL 1058

Query: 1094 EEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTL 1153
             +EVYM  PPG+      + VC+L+KA+YGLKQ+PRAW+      ++++G+  S  D +L
Sbjct: 1059 TDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSL 1118

Query: 1154 FIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYS 1213
            F+   R   +  +LVYV+D++I GND +  ++    L+ +F +K+   L YFLG+E    
Sbjct: 1119 FVLQ-RGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRV 1177

Query: 1214 KQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIY 1273
             QG+ +SQR+Y LDLL  T  L  KP+  P+  + K+            +Y+ +VG L Y
Sbjct: 1178 PQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQY 1237

Query: 1274 LSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTD 1333
            L+ TRPD++Y V+ +SQ+MH P + H  A+ R+L+YL  +P  G+  KK   LS+  Y+D
Sbjct: 1238 LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSD 1297

Query: 1334 ADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKII 1393
            AD+AG   D  ST GY ++LG + ++W SKKQ  V RSS EAE+R++A    EL  +  +
Sbjct: 1298 ADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSL 1357

Query: 1394 LDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPS 1453
            L +L I+   P  ++CDN  A  +  NPV H R KHI +D HFI+ ++ S  +   +V +
Sbjct: 1358 LTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVST 1417

Query: 1454 GLQLADVLTKGLPLERFRELTCKLGMIDI 1482
              QLAD LTK L    F+  + K+G+I +
Sbjct: 1418 HDQLADTLTKPLSRVAFQNFSRKIGVIKV 1446


>At2g07010 putative retroelement pol polyprotein
          Length = 1413

 Score =  625 bits (1611), Expect = e-179
 Identities = 415/1250 (33%), Positives = 632/1250 (50%), Gaps = 93/1250 (7%)

Query: 9    PKEKLTSGVKGVSLPPLTHKDLP-VLQGSFRLDGRNYLQWSELVRHTLISRQKISYIEET 67
            P+      V  VS   L   D P  +  S  L G NY +WS  + + L +++K  +I  +
Sbjct: 13   PRTNQQPDVTKVSPYTLASSDNPGAMISSVMLTGDNYNEWSTKMLNALQAKRKTGFINGS 72

Query: 68   A--PAETDPQYDTWREENSLIMTWFWYSMIPEISRNYMFFPTAKEIWNNLAQAYSKKQDL 125
               P   +P Y+ W+  NS+I+ W   S+ P++     F   A ++W+ L Q +S    +
Sbjct: 73   ISKPPLDNPDYENWQAVNSMIVGWIRASIEPKVKSTVTFICDAHQLWSELKQRFSVGNKV 132

Query: 126  SACYELENKVFNSKQGTLSVTDYYGTLNGLWIELDQYQNLKM-KCD--SDSTTL--NKFI 180
               ++++ ++   +Q    V DYYG L  LW E   Y+ + + KC   +   TL  +K  
Sbjct: 133  HV-HQIKTQLAACRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTCGATLEPSKER 191

Query: 181  EKARIFKFLSGLN-SEFDPIRVQILGKEQFPSLSEVFS-IVRGEETRRTVMVEDKSVDGS 238
            E+ +I +F+ GL+ S F  +   ++  + FPSL E++S +VR E+   +V + ++     
Sbjct: 192  EEEKIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQSAI 251

Query: 239  ALASGKGPIKGSTSFGRPNRDDRPNRDDRFNGDDRFNRDDRCTYCKRSGHTKEYCFKLYG 298
               + +  +   T+ GR +     +RD          R   C++C RSGH K+ C+++ G
Sbjct: 252  GFLTRQSEV---TADGRTDSSIIKSRD----------RSVLCSHCGRSGHEKKDCWQIVG 298

Query: 299  -------RENVLARMSKSKGAPQRRANHTASDMENDGEVPPVPPAEDVPSLSKAELERLR 351
                   R N   R S S+G   R +    S               ++    +   ++LR
Sbjct: 299  FPDWWTERTNGGGRGSSSRGRGGRSSGSNNSGRGRGQVTAAHATTSNLSPFPEFTPDQLR 358

Query: 352  VFMDSLSKPSGSCSLTMTGKSSTFLSLNALSTENDWIIDFGATDHMTPHPSHLSSYSTYP 411
            V    +   +   S  ++GK              D I+D GA+ HMT   S L++  T P
Sbjct: 359  VITQMIQNKNNGTSDKLSGKMKL----------GDVILDTGASHHMTGQLSLLTNIVTIP 408

Query: 412  GKHYITVANGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFH 471
                +  A+G +      G   LS ++ L  VL+VP L+ +L+S+ KL + + C   F  
Sbjct: 409  SCS-VGFADGRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCLALFTD 467

Query: 472  SHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTSSESWNTSQIWLRHKRLGHPPFSI 531
            +  V QD  +  +IG  +E+DG+Y L    +    T  +   T+   L H+RLGHP FS+
Sbjct: 468  TICVLQDRFSRTLIGTGEERDGVYYLTDAATT---TVHKVDITTDHALWHQRLGHPSFSV 524

Query: 532  LRTMFPHLFSKVSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVS 591
            L ++     S  SV S  CDVC  +K  R  F  S+NK    F L+H DVWGP  + +  
Sbjct: 525  LSSLPLFSGSSCSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRVPSSC 584

Query: 592  GAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNK 651
            GA +F+T +DD +R  W +L+  KSEV  +  NF      QFGK +K +RSDNG E +  
Sbjct: 585  GAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMC- 643

Query: 652  NFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAA 711
              S +  + G+VH+ +CV  PQQNG  ERK+RH+L ++RALLFQ ++P  +WGEAV+TAA
Sbjct: 644  -LSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAA 702

Query: 712  YLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIK 771
            YLINR PS + + +SP  ++    P        Q RVFG + + H     + K   R+  
Sbjct: 703  YLINRTPSSIHNGLSPYELLHGCKPDYD-----QLRVFGSACYAHRVTRDKDKFGERSRL 757

Query: 772  CIFIGYASDKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIP 831
            CIF+GY   +KG+K Y   +    +S DV F+E+   Y   +   GDT    +P ++   
Sbjct: 758  CIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYATNE---GDT--IYTPPVTCPI 812

Query: 832  LLQEPLMP--------------SSIPI----TEDSDDDDNGPEQVPNQNDDN---GLELV 870
               E  +P              S  P+      +SD + + P+ +P   DD       + 
Sbjct: 813  TYDEDWLPFTTLEDRGSDENYLSDPPVCVTNVSESDTEHDTPQSLPTPVDDPLSPSTSVT 872

Query: 871  PDQNDDNGPELVPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDPEVSVP---------NPE 921
            P Q   N         NV       Q+   P++     +    +V  P         N  
Sbjct: 873  PTQTPTNSSSSTSPSTNVS----PPQQDTTPIIENTPPRQGKRQVQQPARLKDYILYNAS 928

Query: 922  PSNSYEHNLDDLPIALRKGKRSCAKYPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEV 981
             + +  H L           +   +YP++ Y+S +  S  H+ F++AI +   P   +E 
Sbjct: 929  CTPNTPHVLSPSTSQSSSSIQGNLQYPLTDYISDECFSAGHKVFLAAITANDEPKHFKED 988

Query: 982  LKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVA 1041
            +K K W  AM +E+ AL+ N T  IV+ P  K  +G +W+Y  K+ +DGT++RYKARLV 
Sbjct: 989  VKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERYKARLVV 1048

Query: 1042 KGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEI 1101
            +G  Q  G DY ETFAPV KM TVR +L L A   WE+ Q DV NAFLHGDLEEEVYM++
Sbjct: 1049 QGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKL 1108

Query: 1102 PPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNG 1161
            PPG+   S  +KVC+L+K+LYGLKQ+PR WF + ++A+   G+ Q   D++ F  ++  G
Sbjct: 1109 PPGF-RHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYS-FFSYSCKG 1166

Query: 1162 KLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVA 1211
                +LVYV+D+II GNDE   Q  ++ L   F MKDLGKLKYFLG+EV+
Sbjct: 1167 IELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIEVS 1216



 Score =  181 bits (460), Expect = 2e-45
 Identities = 90/198 (45%), Positives = 137/198 (68%)

Query: 1288 VSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTT 1347
            VS+    P+E HL+A  RI++YLK SPG+G+L   ++ L++EVY D+D+    + RRS +
Sbjct: 1215 VSRGPDAPREAHLEAAMRIVRYLKGSPGQGILLSANKDLTLEVYCDSDFQSCPLTRRSLS 1274

Query: 1348 GYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRL 1407
             Y + LGG+ ++W++KKQ+ V+ SSAEAE+RAM+  + E+  +  +L +L I   AP RL
Sbjct: 1275 AYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTRL 1334

Query: 1408 FCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPL 1467
            FCD+K+AISIA NPV H+RTKHIE D H +++ +   +I+T +V +  QLAD+ TK L  
Sbjct: 1335 FCDSKAAISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQLADIFTKALGR 1394

Query: 1468 ERFRELTCKLGMIDIHSP 1485
             +F  L  KLG+ ++H+P
Sbjct: 1395 NQFIYLMSKLGIQNLHTP 1412


>At2g06840 putative retroelement pol polyprotein
          Length = 1102

 Score =  560 bits (1443), Expect = e-159
 Identities = 415/1307 (31%), Positives = 617/1307 (46%), Gaps = 237/1307 (18%)

Query: 196  FDPIRVQILGKEQFPSLSEVFS-IVRGEET---RRTVMVEDKSVDGSALASGKGPIKGST 251
            F PIR +I  ++  PS + V+S ++RG++     R+    +      ++ +   P   + 
Sbjct: 15   FAPIRSKITDEDPLPSHNRVYSRVIRGQQNLDVARSKETTNSEAINFSVKTPSAPQVAAV 74

Query: 252  SFGRPNRDDRPNRDDRFNGDDRFNRDDRCTYCKRSGHTKEYCFKLYG-RENVLARMSKSK 310
               +P                   RD  CT+C R GH    CF ++G  E    +   S+
Sbjct: 75   YAPKP-------------------RDRSCTHCHRQGHDVTDCFLVHGFPEWYYEQKGGSR 115

Query: 311  GAPQRRANHTASDMENDGEVPPVPPAEDVPSLSKAELE---RLRVFMDSLSKPSGSCSLT 367
             +   R     S +EN        PA+     SK       R+      LS  +GS  +T
Sbjct: 116  VSSDNR--EVVSRLENK-------PAKREGRSSKGNGRGRGRVNSARAPLSSSNGSDQIT 166

Query: 368  MT-------GKSSTFLSLNALSTENDWIIDFGATDHMTPHPSHLSS-YSTYPGKHYITVA 419
                        ST   L+  +   D IID GA+ HMT   S L   +   P    +T  
Sbjct: 167  QLISLLQAQRPKSTSERLSGNTCLTDVIIDSGASHHMTGDCSILVDVFDIIPSA--VTKP 224

Query: 420  NGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDL 479
            +G  +  T C  + LS S  L+ VL VP     L+S+ KL +            G F   
Sbjct: 225  DGKASCATKCVTLLLSSSYKLQDVLFVPDFDCTLISVSKLLKQT----------GPF--- 271

Query: 480  ATGQIIGIAKEQDGLYCLQHE-ESKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPH 538
             +  +IG  + ++ +Y       +  H+TSS+S ++  +W  H+RLGHP  S L ++   
Sbjct: 272  -SRTLIGAGEVRERVYYFTGVLVASAHKTSSDSTSSGALW--HRRLGHPSTSFLLSL--- 325

Query: 539  LFSKVSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVT 598
                          C    H  S  L   + C                            
Sbjct: 326  ------------PEC----HQSSKDLGKIDSC---------------------------- 341

Query: 599  FIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLT 658
              D C+R         K  +  L  NF  M   QF KP++ +RSDNG E +    + +  
Sbjct: 342  --DTCSRA--------KQTLPSLIRNFCAMADRQFRKPVRSIRSDNGTEFMCH--TSYFQ 389

Query: 659  KNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLP 718
            ++G++HE +CVD PQQN   ERK+RH+L + R  LFQ N P                  P
Sbjct: 390  EHGILHETSCVDTPQQNARVERKHRHILNVARTCLFQGNFPT-----------------P 432

Query: 719  SRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYA 778
            S VL   +P  V+    PS  +      R FGC  + H+    + K   R+ KCIFIGY 
Sbjct: 433  SPVLKGKTPYEVLFGKQPSYDML-----RTFGCLCYAHIRPRDKDKFASRSRKCIFIGYP 487

Query: 779  SDKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEPLM 838
                    +   +   + S+D T   S+              E  +P   V P  ++P  
Sbjct: 488  --------HETATPNTHDSIDPTSTSSD--------------ENNTPPEPVTPQAEQPHS 525

Query: 839  PSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQNDDNGPELVPDQNNVDRFRIKYQRK 898
            PSSI          + P  V N+   +   L  D +D + P L                 
Sbjct: 526  PSSI----------SSPHIVHNKGSVHSRHLNED-HDSSSPGL----------------- 557

Query: 899  VKPVLIQQQDQPSDPEVSVPNPEPSNSYEHNLDDLPIALRKGKRSCAKYPISQYVSTQNL 958
              P L+ +  +P  P V +      +   H +   P     G        +S    +  +
Sbjct: 558  --PELLGKGHRPKHPPVYL-----KDYVAHKVHSSPHTSSPG--------LSDSNVSPTV 602

Query: 959  SVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGC 1018
            S  H +F++AI         ++ +  K+W  AM +E+ AL+ N T  + + P+ K+ +  
Sbjct: 603  SANHIAFMAAILDSNEQNHFKDDVLIKEWCDAMQKEIEALEANHTWDVTDLPHGKKAISS 662

Query: 1019 KWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWE 1078
            KW+Y +K+ SDGTL+R+KARLV  G  Q  GID+ ETFAPVAKM TVR++L++AA  DW+
Sbjct: 663  KWVYKLKFNSDGTLERHKARLVVMGNHQKEGIDFKETFAPVAKMTTVRLLLAVAAAKDWD 722

Query: 1079 LQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNA 1138
            + Q DV NAFLHGDLE+E                       +LYGLKQ+PR WF + + A
Sbjct: 723  VFQMDVHNAFLHGDLEQE-----------------------SLYGLKQAPRCWFAKLSTA 759

Query: 1139 MVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKD 1198
            +  LG+ QS  D++LF  + R+G +   LVYV+D II GN+     + ++ L   F MKD
Sbjct: 760  LRKLGFTQSYEDYSLFSLN-RDGTVIHFLVYVDDFIIVGNNLKAIDHFKEHLHKCFHMKD 818

Query: 1199 LGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLR 1258
            LGKLKYFLG+EV+    G  +SQ+KY LD++ E G LG KP  VP+E +HK+GS    + 
Sbjct: 819  LGKLKYFLGLEVSRGADGFCLSQQKYALDIINEAGLLGYKPSAVPMELHHKLGSISSPVF 878

Query: 1259 VHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGL 1318
             + AQY+RLV + IYL+ TRPD++Y V ++SQFM  P E H  A  R+++YLK SP +G+
Sbjct: 879  DNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTPLEAHWHATLRLVRYLKGSPDQGI 938

Query: 1319 LFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFR 1378
            L +    LS+  Y D+DY      RRS + Y ++LG   ++W++KKQ+ V+ SSAEAE+R
Sbjct: 939  LLRSDRALSLTAYCDSDYNPCPRTRRSLSAYVLYLGDTPISWKTKKQDTVSSSSAEAEYR 998

Query: 1379 AMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIK 1438
            AMA  + E+  +K ++  L + +  P+ LFCD+++AI IA NPV H+RTKHIE D H ++
Sbjct: 999  AMAYTLKEIKWLKALMTTLGVDHTQPILLFCDSQAAIHIAANPVFHERTKHIEKDCHQVR 1058

Query: 1439 EKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHSP 1485
            + +   +IST ++ +     D+LTK LP   F  L   LG  +   P
Sbjct: 1059 DAVTDKVISTPHIST----TDLLTKALPRPTFERLLSTLGTCNYDLP 1101


>At5g35820 copia-like retrotransposable element
          Length = 1342

 Score =  557 bits (1435), Expect = e-158
 Identities = 361/1111 (32%), Positives = 567/1111 (50%), Gaps = 107/1111 (9%)

Query: 383  TENDWIIDFGATDHMTPHPSHLSSYS-TYPGKHYITVANGSQNQITGCGNIHLS----PS 437
            T + WI+D G + HMT     +  +  T  GK  + + N + +++ G G++ +      +
Sbjct: 308  TPDTWILDTGCSFHMTCRKDWIIDFKETASGK--VRMGNDTYSEVKGIGDVRIKNEDGST 365

Query: 438  LPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCL 497
            + L  V ++P++S NL+S+  L  D  C   F    G+         +   K++  LY L
Sbjct: 366  ILLTDVRYIPEMSKNLISLGTL-EDKGC--WFESKKGILTIFKNDLTVLTGKKESTLYFL 422

Query: 498  QHEE--SKCHQTSSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKVSVESFHCDVCQF 555
            Q      + +    E   TS +W  H RLGH     L+ +         V   H D    
Sbjct: 423  QGTTLAGEANVIDKEKDETS-LW--HSRLGHIGAKGLQVL---------VSKGHLD---- 466

Query: 556  SKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSIS-NVSGAKWFVTFIDDCTRITWVFLMKD 614
             K+   +F  + +      D VHSD+WG +++  ++   ++F+TFIDD TR TW++ ++ 
Sbjct: 467  -KNIMISFGAAKHVTKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRT 525

Query: 615  KSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQ 674
            K E F  F  +   I  Q  K +K L +DNG E  N+ F  F  K GV+   TC   PQQ
Sbjct: 526  KDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQ 585

Query: 675  NGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSF 734
            NGVAER NR ++   R +L +  + K +W EA  TA +LIN+ PS  +    P    T  
Sbjct: 586  NGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGH 645

Query: 735  FPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRV 794
             P   I      + FG  A++H     +GKL+PRA K IF+GY    K +K +    R+ 
Sbjct: 646  PPDYKI-----LKKFGSVAYIH---SDQGKLNPRAKKGIFLGYPDGVKRFKVWLLEDRKC 697

Query: 795  YISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEPLMPSSIPITEDSDDDDNG 854
             +S D+ FQE++ +    +LQ  D  E +     V   L        I +   S DD+N 
Sbjct: 698  VVSRDIVFQENQMY---KELQKNDMSEEDKQLTEVERTL--------IELKNLSADDENQ 746

Query: 855  PEQVPNQNDDNGLELVPDQNDDNGPELVPDQNNVDRFRIKYQRKVKPVLIQQQDQPSDPE 914
             E   N N +          D    E   D + ++ + +   R  + +   Q        
Sbjct: 747  SEGGDNSNQEQASTTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQ-------- 798

Query: 915  VSVPNPEPSNSYEHNLDDLPIALRKGKRSCAKYPISQYVSTQNLSVQHQSFISAIDSIRV 974
                                                ++V   +  V     ++    +  
Sbjct: 799  ------------------------------------RFVEEDDSLVGFALTMTEDGEVYE 822

Query: 975  PTSVQEVLKD---KKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGT 1031
            P + +E ++    +KW QA  EEM ++ KN T  +++KP  KR +GCKWI+  K    G 
Sbjct: 823  PETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGV 882

Query: 1032 -LDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLH 1090
               RYKARLVAKG++Q  GIDY E F+PV K  ++R +LS+   FD EL+Q DVK AFLH
Sbjct: 883  EPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLH 942

Query: 1091 GDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGD 1150
            G+L+E + M  P GY+      KVC LKK+LYGLKQSPR W  RF + M++ GY++S+ +
Sbjct: 943  GNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYN 1002

Query: 1151 HTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEV 1210
              ++ +   +G    LL+YV+DM+IA  ++ + Q L++ L  +FEMKDLG  +  LGME+
Sbjct: 1003 PCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEI 1062

Query: 1211 AYSK-QGIF-ISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLV 1268
              ++ QGI  +SQ +YV  +L+  G    K    P+  + K+ ++ E      A+Y +LV
Sbjct: 1063 TRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLARDAEYMKLV 1122

Query: 1269 ------GKLIY-LSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLLFK 1321
                  G ++Y +  +RPD+AYPV VVS+FM  P + H QAV  +++Y+K +    L FK
Sbjct: 1123 PYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRFK 1182

Query: 1322 KSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMA 1381
            K ++  +  Y D+DYA  +  RRS TG+    GGN ++W+S  Q VVA S+ EAE+ A+A
Sbjct: 1183 KDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALA 1242

Query: 1382 QGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKL 1441
            + V E + ++ +  ++  + +A + + CD++SAI+++ N V H+RTKHI++  HFI+EK+
Sbjct: 1243 EAVKEAIWLRGLAAEMGFEQDA-VEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKI 1301

Query: 1442 NSSLISTQYVPSGLQLADVLTKGLPLERFRE 1472
                I    + +    AD+ TK +P+ + +E
Sbjct: 1302 ADGEIQVVKISTTWNPADIFTKTVPVSKLQE 1332


>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  528 bits (1360), Expect = e-150
 Identities = 276/694 (39%), Positives = 424/694 (60%), Gaps = 15/694 (2%)

Query: 777  YASDKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQEAESPELSVIPLLQEP 836
            Y S  KGYK     S  + I+ +V F E++  +   +      +  +    S++PL    
Sbjct: 335  YPSGYKGYKVLDLESHSISITRNVVFHETKFPFKTSKFL---KESVDMFPNSILPLPAPL 391

Query: 837  LMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVPDQ-NDDNGPELVPDQNNVDRFRIKY 895
                S+P+ +D   DDN      + +  + +  +P   N  N   L  D N+V   R K 
Sbjct: 392  HFVESMPLDDDLRADDNNASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKR 451

Query: 896  QRKVKPVLIQQQDQPSDPEVSVPNPEPSNSYEHNLDDLPIALRKGKRSCAKYPISQYVST 955
              K  P  + +    S P +S  +P  S S E     +P      K+    YP+S  +S 
Sbjct: 452  NAKA-PAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIP-----PKKITTPYPMSTAISY 505

Query: 956  QNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRT 1015
              L+    S+I A +    P +  + +K +KW +A NEE+HAL++N T  +      K  
Sbjct: 506  DKLTPLFHSYICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNV 565

Query: 1016 VGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHF 1075
            VGCKW++T+KY  DG+++RYKARLVA+G+TQ  GIDY ETF+PVAK  +V+++L LAA  
Sbjct: 566  VGCKWVFTIKYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAAT 625

Query: 1076 DWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSG----RNKVCKLKKALYGLKQSPRAW 1131
             W L Q DV NAFLHG+L+EE+YM +P GY P +G       VC+L K+LYGLKQ+ R W
Sbjct: 626  GWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQW 685

Query: 1132 FGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELA 1191
            + R ++  +   + QS  D+T+F+K +    + ++LVYV+D++IA ND    +NL++ L 
Sbjct: 686  YKRLSSVFLGANFIQSPADNTMFVKVSCTS-IIVVLVYVDDLMIASNDSSAVENLKELLR 744

Query: 1192 VQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIG 1251
             +F++KDLG  ++FLG+E+A S +GI + QRKY  +LL++ G  GCKP  +P++ N  + 
Sbjct: 745  SEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLT 804

Query: 1252 SSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLK 1311
                 L  +   Y+ LVG+L+YL  TRPDI + V  +SQF+  P + H+QA  ++L+YLK
Sbjct: 805  KEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLK 864

Query: 1312 ASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARS 1371
             +PG+GL++  S +L +  ++DAD+      RRS TG+C++LG +L+TW+SKKQ+VV+RS
Sbjct: 865  GNPGQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRS 924

Query: 1372 SAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIE 1431
            S E+E+R++AQ  CE++ ++ +L DL +    P +LFCDNKSA+ +A NPV H+RTKHIE
Sbjct: 925  STESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIE 984

Query: 1432 IDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGL 1465
            ID H +++++ +  + T +VP+G QLAD+LTK L
Sbjct: 985  IDCHTVRDQIKAGKLKTLHVPTGNQLADILTKPL 1018



 Score = 91.3 bits (225), Expect = 4e-18
 Identities = 54/164 (32%), Positives = 88/164 (52%), Gaps = 22/164 (13%)

Query: 595 WFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*VNKNFS 654
           +F+T +DDCTR TWV++MK+KSEV  +F  F  +I TQ+   IK +RSDN KE     F+
Sbjct: 252 YFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKE---LAFT 308

Query: 655 EFLTKNGVVHELTCVDAPQQNGVAER------------KNRHLLEITRALLFQMNVPKFY 702
           +F+ + G++H+ +C   PQQN V ER               H + ITR ++F      F 
Sbjct: 309 KFVKEQGMIHQFSCAYTPQQNSVVERYPSGYKGYKVLDLESHSISITRNVVFHETKFPFK 368

Query: 703 WGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQS 746
             + +  +   ++  P+ +L   +P+     F  S+P+   L++
Sbjct: 369 TSKFLKES---VDMFPNSILPLPAPL----HFVESMPLDDDLRA 405



 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 368 MTGKSSTFLSLNALSTENDWIIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQIT 427
           +T ++ T  SL  + + + WIID GA+ H+    +         G   +T+ NG++  IT
Sbjct: 80  LTFQNHTLSSLQNVLSSDAWIIDSGASSHVCSDLTMFRELIHVSGVT-VTLPNGTRVAIT 138

Query: 428 GCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGI 487
             G I ++ +L L  VL VP    NL+S+  L + L+ +  FF      Q+L  G +IG 
Sbjct: 139 HTGTICITSTLILHNVLLVPDFKFNLISVCCLVKTLSYSAHFFADCCYIQELTRGLMIGR 198

Query: 488 AKEQDGLYCLQHEE---SKCHQTSSESWNTSQ--IWLRHKRLG 525
            K  + LY L+ +    S     +S    T Q    L H+RLG
Sbjct: 199 GKTYNNLYILETQRTSFSPSLPAASSFTGTVQDDCLLWHQRLG 241


>At4g22040 LTR retrotransposon like protein
          Length = 1109

 Score =  513 bits (1322), Expect = e-145
 Identities = 254/540 (47%), Positives = 372/540 (68%), Gaps = 3/540 (0%)

Query: 946  KYPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRK 1005
            ++P S+ +S    +  H++F++A+ +   PT+  E + DK W +AM+ E+ +L  N T  
Sbjct: 572  EFPYSK-MSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFS 630

Query: 1006 IVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTV 1065
            IV  P  KR +G KW+Y +KYRSDG ++RYKARLV  G  Q  G+DYDETFAPVAKM+TV
Sbjct: 631  IVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTV 690

Query: 1066 RIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGRNKVCKLKKALYGLK 1125
            R+ L +AA  DW + Q DV NAFLHGDL+EEVYM++P G+      +KVC+L K+LYGLK
Sbjct: 691  RLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQ-CDDPSKVCRLHKSLYGLK 749

Query: 1126 QSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQN 1185
            Q+PR WF + ++A+   G+ QS  D++LF  +  +G    +LVYV+D+II+G+       
Sbjct: 750  QAPRCWFSKLSSALKQYGFTQSLSDYSLF-SYNNDGVFVHVLVYVDDLIISGSCPDAVAQ 808

Query: 1186 LRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIE 1245
             +  L   F MKDLG LKYFLG+EV+ + QG ++SQRKYVLD++ E G LG +P   P+E
Sbjct: 809  FKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLE 868

Query: 1246 QNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDR 1305
            QNHK+  S   L    ++Y+RLVG+LIYL+ TRP+++Y V  ++QFM +P++ H  A  R
Sbjct: 869  QNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIR 928

Query: 1306 ILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQ 1365
            +++YLK++PG+G+L   +  L +  + D+DYA   + RRS TGY + LG   ++W++KKQ
Sbjct: 929  VVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQ 988

Query: 1366 NVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHD 1425
              ++RSSAEAE+RAMA    EL+ +K +L DL + +   MR+F D+KSAI+++ NPVQH+
Sbjct: 989  PTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHE 1048

Query: 1426 RTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHSP 1485
            RTKH+E+D HFI++ +   +I+T +VPS  QLAD+LTK L  +  R    KLG++D+H+P
Sbjct: 1049 RTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKLGILDVHAP 1108



 Score =  253 bits (645), Expect = 8e-67
 Identities = 150/419 (35%), Positives = 226/419 (53%), Gaps = 14/419 (3%)

Query: 393 ATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNN 452
           A+ HMT +   LS   +      I +A+G++      G + L   L LK V +V +L ++
Sbjct: 169 ASHHMTGNLELLSGMRSM-SPVLIILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESD 227

Query: 453 LLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTSSESW 512
           L+S+ ++  + +C V       V QD  T  + GI K ++G +C +  E+     +S   
Sbjct: 228 LISVGQMMDENHCVVQLADHFLVIQDRTTRMVTGIGKRENGSFCFRGMENAAAVHTSVK- 286

Query: 513 NTSQIWLRHKRLGHPPFSILRTMFPHLFS--KVSVESFHCDVCQFSKHHRSTFLPSNNKC 570
             +   L H+RLGH    I+  +   L S  K  +E+  CD C  +K  R TF   +N+ 
Sbjct: 287 --APFDLWHRRLGHASDKIVNLLPRELLSSGKEILENV-CDTCMRAKQTRDTFPLRDNRS 343

Query: 571 AQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIR 630
              F L+H DVWGP    + SGA++F+T +DD +R  WV+LM DKSE  +   +F  ++ 
Sbjct: 344 MDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVE 403

Query: 631 TQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITR 690
            QF   IK +RSDNG E +     E+    G+ HE +CV  P QNG  ERK+RH+L I R
Sbjct: 404 RQFDTEIKTVRSDNGTEFL--CMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIAR 461

Query: 691 ALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFG 750
           AL FQ  +P  +WGE +L+AAYLINR PS +L   SP  ++   + + P  S L  RVFG
Sbjct: 462 ALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEML---YKTAPKYSHL--RVFG 516

Query: 751 CSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQESESFY 809
              + H   H   K   R+ +C+F+GY   +KG++ +    ++ ++S DV FQE+E  Y
Sbjct: 517 SLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPY 575



 Score = 63.9 bits (154), Expect = 7e-10
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 31/187 (16%)

Query: 39  LDGRNYLQWSELVRHTLISRQKISYIEETAPAETD--PQYDTWREENSLIMTWFWYSMIP 96
           L   NY +W+   +  L SR+K  +++ T P   D  P  + W   N+L+++W   ++  
Sbjct: 38  LKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDWLTINALLVSWMKMTIDS 97

Query: 97  EISRNYMFFPTAKEIWNNLAQAYS---------KKQDLSACYELENKVFNSKQGTLSVTD 147
           E+  N      A+++W  + + +S          K DL+ C          KQ  ++V  
Sbjct: 98  ELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATC----------KQEGMTVEG 147

Query: 148 YYGTLNGLWIELDQYQNLKMKCDSDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQILGKE 207
           YYG LN +W  ++ Y+ L++ C S   T N         + LSG+ S   P+ + +    
Sbjct: 148 YYGKLNKIWDNINSYRPLRI-CASHHMTGN--------LELLSGMRS-MSPVLIILADGN 197

Query: 208 QFPSLSE 214
           +  ++SE
Sbjct: 198 KRVAVSE 204


>At2g24660 putative retroelement pol polyprotein
          Length = 1156

 Score =  489 bits (1260), Expect = e-138
 Identities = 272/678 (40%), Positives = 405/678 (59%), Gaps = 34/678 (5%)

Query: 811  NPQLQGGDTQEAESPELSVIPLLQEPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELV 870
            N  LQ     E +S        +   L  S +  ++ S  D N          D+  ++V
Sbjct: 480  NSALQTDSVFEPDSDSDVAPASIASDLQNSRVDSSDSSTPDKNLASGDTLAQIDDSPDIV 539

Query: 871  PDQNDDNGPELVPDQNNVDRFRIKYQRKVKPVLIQQQDQPS-DPEVSVPNPE--PSNSYE 927
               N +N P  V D   V+    + +++     ++ QD    +  VS  NP   P +S +
Sbjct: 540  STPNRNNQPLFVVDSPFVEATSPRQRKRQIRQSVRLQDYVLYNATVSPINPHALPDSSSQ 599

Query: 928  HNLDDLPIALRKGKRSCAKYPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKW 987
             +      ++ +G  S   YP+S YVS    S  H++F++AI +   P   +E ++ K W
Sbjct: 600  SS------SMVQGTSSL--YPLSDYVSDDCFSAGHKAFLAAITANDEPKHFKEAVRIKVW 651

Query: 988  IQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQT 1047
              AM +E+ AL+ N T  IV+ P  K  +G +W+Y  KY +DG+++RYKARLV +G  Q 
Sbjct: 652  NDAMFKEVDALEINKTWDIVDLPPGKVAIGSQWVYKTKYNADGSIERYKARLVVQGNKQV 711

Query: 1048 YGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDP 1107
             G DY+ETFAPV KM TVR +L L A   WE+ Q DV NAFLHGDL+EEVYM++PPG+  
Sbjct: 712  EGEDYNETFAPVVKMTTVRTLLRLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRH 771

Query: 1108 TSGRNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLL 1167
             S  +KVC+L+K+LYGLKQ+PR WF + ++A++  G+ Q   D++ F  +TRNG    +L
Sbjct: 772  -SHPDKVCRLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYSFF-SYTRNGIELRVL 829

Query: 1168 VYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLD 1227
            VYV+D++I GND    Q  ++ L   F MKDLGKLKYFLG+EV+   +GIF+SQRKY LD
Sbjct: 830  VYVDDLLICGNDGYMLQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALD 889

Query: 1228 LLKETGKLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSV 1287
            ++ ++G LGC+P   P+EQNH + + +  L      Y+RLVG+L+YL HTRP+++Y V V
Sbjct: 890  IITDSGNLGCRPALTPLEQNHHLATDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHV 949

Query: 1288 VSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTT 1347
            +SQFM  P+E HL A  RI+++LK SPG+G+L     +L ++VY D+D+      RRS +
Sbjct: 950  LSQFMQTPREAHLAAAMRIVRFLKGSPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLS 1009

Query: 1348 GYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRL 1407
             Y + LGG+ ++W++KKQ+ V+ SSAEAE+RAM+  + E+  ++ +L +L          
Sbjct: 1010 AYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALREIKWLRKLLKELA--------- 1060

Query: 1408 FCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPL 1467
                        NPV H+RTKHIE D H +++ +   +I+T +V +  QLAD+ TK L  
Sbjct: 1061 ------------NPVFHERTKHIESDCHSVRDAVRDGIITTHHVRTNEQLADIFTKALGR 1108

Query: 1468 ERFRELTCKLGMIDIHSP 1485
             +F  L  KLG+ D+H+P
Sbjct: 1109 SQFLYLMSKLGIQDLHTP 1126



 Score =  242 bits (617), Expect = 1e-63
 Identities = 160/469 (34%), Positives = 238/469 (50%), Gaps = 28/469 (5%)

Query: 450 SNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTSS 509
           SN   SI    R +   +T  +      D  +  +IG  +E+DG+Y L    +    T+ 
Sbjct: 24  SNKEESISSEHRLVTLTLTHENLKACKLDRFSRTLIGSGEERDGVYYLTDVATAKIHTAK 83

Query: 510 ESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKVSVESFHCDVCQFSKHHRSTFLPSNNK 569
            S +   +W  H+RLGHP FS+L ++     S +SV S  CDVC  +K  R  F  S NK
Sbjct: 84  VS-SDQALW--HQRLGHPSFSVLSSLPVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNK 140

Query: 570 CAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMI 629
             + F L+H DVWGP  + +  GA +F+T +DD +R  W +L+  KSEV  +  NF    
Sbjct: 141 SIECFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYT 200

Query: 630 RTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEIT 689
             QFGK +K LRSDNG E +    + +  ++G+VH+ +CV  PQQNG  ERK+RH+L + 
Sbjct: 201 EKQFGKSVKVLRSDNGTEFM--CLASYFREHGIVHQTSCVGTPQQNGRVERKHRHILNVA 258

Query: 690 RALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVF 749
           RA+LFQ ++P  +WGEAVLTAAYLINR P+ + + +SP  ++ +  P+         RVF
Sbjct: 259 RAILFQASLPIQFWGEAVLTAAYLINRTPTSLHNGLSPYEILHNSKPNYE-----HLRVF 313

Query: 750 GCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQESESFY 809
           G + +VH     + K   R+  C+FIGY   +KG+K +    +   +S DV F+  E  +
Sbjct: 314 GSACYVHRASRDKDKFGERSRLCVFIGYPFAQKGWKVFDMEKKEFLVSRDVVFR--EDVF 371

Query: 810 PNPQLQGGDTQEAESPELSVIPLLQEPLMPSSIPITEDSDDDDNGPEQV--PNQNDDNGL 867
           P           + +P      L+ E  M S+  +       D G   V   N+N D   
Sbjct: 372 PYAATNTDHVSASPAP-----LLVDEDWMVSTTTL-------DRGSSAVLSANKNTDPKP 419

Query: 868 ELVPDQNDDNGPELV--PDQNNVDRFRIKYQRKVKPVLIQQQDQPSDPE 914
             V   +D   PE V  PD         K     +PV + + D  ++P+
Sbjct: 420 NSVTKPDDFAEPESVTKPDDFAEPESVTKPDDFAEPVSVTKPDDFAEPD 468


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  488 bits (1257), Expect = e-138
 Identities = 243/540 (45%), Positives = 366/540 (67%), Gaps = 6/540 (1%)

Query: 947  YPISQYVSTQNLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKI 1006
            +PIS  +S   +S  H  +I+ I  I +P S  E    K+W  A+++E+ A+++  T +I
Sbjct: 919  HPISSSLSYSQISPSHMLYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEI 978

Query: 1007 VEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVR 1066
               P  K+ VGCKW++TVK+ +DG+L+R+KAR+VAKGYTQ  G+DY ETF+PVAKM TV+
Sbjct: 979  TSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVK 1038

Query: 1067 IILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGR----NKVCKLKKALY 1122
            ++L ++A   W L Q D+ NAFL+GDLEE +YM++P GY    G     N VC+LKK++Y
Sbjct: 1039 LLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIY 1098

Query: 1123 GLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELE 1182
            GLKQ+ R WF +F+N++++LG+++  GDHTLF++     +  +LLVYV+D++IA   E  
Sbjct: 1099 GLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCI-GSEFIVLLVYVDDIVIASTTEQA 1157

Query: 1183 KQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGV 1242
             Q+L + L   F++++LG LKYFLG+EVA + +GI +SQRKY L+LL     L CKP  +
Sbjct: 1158 AQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSI 1217

Query: 1243 PIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQA 1302
            P+  N ++  ++  L   K  Y+RLVGKL+YL+ TRPDI + V+ + QF   P+  HL A
Sbjct: 1218 PMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAA 1277

Query: 1303 VDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRS 1362
            V ++LQY+K + G+GL +   + L+++ YTDAD+      RRSTTG+ MF+G +L++WRS
Sbjct: 1278 VYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRS 1337

Query: 1363 KKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPV 1422
            KKQ  V+RSSAEAE+RA+A   CE+  +  +L  L++    P+ L+ D+ +A+ IA NPV
Sbjct: 1338 KKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRVHSGVPI-LYSDSTAAVYIATNPV 1396

Query: 1423 QHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDI 1482
             H+RTKHIEID H ++EKL++  +   +V +  Q+AD+LTK L   +F  L  K+ + +I
Sbjct: 1397 FHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSIQNI 1456



 Score =  387 bits (993), Expect = e-107
 Identities = 266/860 (30%), Positives = 424/860 (48%), Gaps = 92/860 (10%)

Query: 27  HKDLPVLQGSFRLDGRNYLQWSELVRHTLISRQKISYIEETAPA--ETDPQYDTWREENS 84
           H  L ++  S RLD   Y  WS  +R +L ++ K+ +++ + P   E+DP +  W   NS
Sbjct: 73  HPGLSII--SHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNS 130

Query: 85  LIMTWFWYSMIPEISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLS 144
           ++ +W   S+ P+I R+ +    A +IW +L   ++   +L   Y L  ++ + +QGT+S
Sbjct: 131 MVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLT-NLPRTYNLTQEIQDLRQGTMS 189

Query: 145 VTDYYGTLNGLWIELDQYQNLKMKCD-SDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQI 203
           +++YY  L  LW +LD  + L   C    +  L +  EKA+I KFL+GLN  +  +R QI
Sbjct: 190 LSEYYTLLKTLWDQLDSTEALDDPCTCGKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQI 249

Query: 204 LGKEQFPSLSEVFSIVRGEETRR--------TVMVEDKSVDGSALASGKGP-IKGSTSFG 254
           + K+  PSL+EV+ I+  + +++            +   V  S + S +   ++   + G
Sbjct: 250 IAKKALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEIMYVQSGPNKG 309

Query: 255 RPNRDDRPNRDDRFNGDDRFNRDDRCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQ 314
           RP                       C++C R GH  E C+K +G         KS   P 
Sbjct: 310 RPT----------------------CSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPP 347

Query: 315 R----RANHTASDMENDGEVPPVP------PAEDVPSLSKAELERLRVFMDSLS---KPS 361
           +     A  T S  +  G++  +         +++ +L  ++L+   V   + S   + S
Sbjct: 348 KPQAVAAQVTLSPDKMTGQLETLAGNFSPDQIQNLIALFSSQLQPQIVSPQTASSQHEAS 407

Query: 362 GSCSLTMTG---KSSTF-------LSLNALSTENDWIIDFGATDHMTPHPSHLSSYSTYP 411
            S S+  +G     ST+       +S N+LS++  W+ID GAT H++ H   L       
Sbjct: 408 SSQSVAPSGILFSPSTYCFIGILAVSHNSLSSDT-WVIDSGATHHVS-HDRKLFQTLDTS 465

Query: 412 GKHYITVANGSQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFH 471
              ++ +  G   +I+G G + ++  + L+ VL +P+   NL+SI  LT DL   V F  
Sbjct: 466 IVSFVNLPTGPNVRISGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDP 525

Query: 472 SHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQTSSESWNTSQIWLRHKRLGHPPFSI 531
           S    QDL  G  +G  K    LY L   +++    S  +     +W  HKRLGHP FS 
Sbjct: 526 SCCQIQDLTKGLTLGEGKRIGNLYVL---DTQSPAISVNAVVDVSVW--HKRLGHPSFSR 580

Query: 532 LRTMFPHLFSK--VSVESFHCDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWGPSSISN 589
           L ++   L +    + +S +C VC  +K  + +F  +NN C   F+L+H DVWGP S+  
Sbjct: 581 LDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVET 640

Query: 590 VSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSDNGKE*V 649
           V G K+F+T +DD +R TW++L+K KS+V  +F  F  ++  Q+   +K +RSDN KE  
Sbjct: 641 VEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKE-- 698

Query: 650 NKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYWGEAVLT 709
              F+EF    G+V   +C + P+QN V ERK++H+L + RAL+FQ N+   YWG+ VLT
Sbjct: 699 -LAFTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLT 757

Query: 710 AAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRGKLDPRA 769
           A +LINR PS +LSN +P  V+T   P        Q + FGC  +       R K  PR+
Sbjct: 758 AVFLINRTPSALLSNKTPFEVLTGKLPDYS-----QLKTFGCLCYSSTSSKQRHKFLPRS 812

Query: 770 IKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQE---------------SESFYPNPQL 814
             C+F+GY    KGYK     S  V+IS +V F E               S+ F P   L
Sbjct: 813 RACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFPLASSQQSATTASDVFTPMDPL 872

Query: 815 QGGDTQEAESPELSVIPLLQ 834
             G++  +  P   + P  Q
Sbjct: 873 SSGNSITSHLPSPQISPSTQ 892


>At4g17450 retrotransposon like protein
          Length = 1433

 Score =  485 bits (1248), Expect = e-137
 Identities = 233/533 (43%), Positives = 351/533 (65%), Gaps = 5/533 (0%)

Query: 957  NLSVQHQSFISAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTV 1016
            N +    +FI+ I +  +P    E    K W  AM EE+ A+ +  T  +V  P +K+ +
Sbjct: 899  NTTEPFHAFINNITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAI 958

Query: 1017 GCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFD 1076
            GCKW++T+K+ +DG+++RYKARLVAKGYTQ  G+DY+ETF+PVAK+ +VR++L LAA   
Sbjct: 959  GCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMK 1018

Query: 1077 WELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSGR----NKVCKLKKALYGLKQSPRAWF 1132
            W + Q D+ NAFL+GDL+EE+YM+IPPGY    G     + +C+L K++YGLKQ+ R W+
Sbjct: 1019 WSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWY 1078

Query: 1133 GRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAV 1192
             + +N +  +G+++S  DHTLFIK+  NG L  +LVYV+D++I  N +        EL  
Sbjct: 1079 LKLSNTLKGMGFQKSNADHTLFIKYA-NGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKS 1137

Query: 1193 QFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGS 1252
             F+++DLG  KYFLG+E+A S++GI I QRKY+L+LL  TG LG KP  +P++ + K+  
Sbjct: 1138 YFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNK 1197

Query: 1253 SEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKA 1312
             +         Y++LVGKL+YL  TRPDIAY V+ + QF H P   HL AV ++L+YLK 
Sbjct: 1198 EDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKG 1257

Query: 1313 SPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSS 1372
            + G+GL +   ++  +  YTD+D+      RR    YCMF+G  LV+W+SKKQ+ V+ S+
Sbjct: 1258 TVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMST 1317

Query: 1373 AEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEI 1432
            AEAEFRAM+QG  E++ +  + DD K+ +  P  L+CDN +A+ I +N V H+RTK +E+
Sbjct: 1318 AEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVEL 1377

Query: 1433 DRHFIKEKLNSSLISTQYVPSGLQLADVLTKGLPLERFRELTCKLGMIDIHSP 1485
            D +  +E + S  + T +V +G Q+AD LTK +   +F +L  K+G+ +I +P
Sbjct: 1378 DCYKTREAVESGFLKTMFVETGEQVADPLTKAIHPAQFHKLIGKMGVCNIFAP 1430



 Score =  315 bits (808), Expect = 1e-85
 Identities = 252/888 (28%), Positives = 396/888 (44%), Gaps = 151/888 (17%)

Query: 39  LDGRNYLQWSELVRHTLISRQKISYIEETAPAE--TDPQYDTWREENSLIMTWFWYSMIP 96
           LDG NY  WS  +R +L ++ K+S+++ + P    +D  +  W   NS++ TW       
Sbjct: 85  LDGTNYNNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRMFKIWSRCNSMVKTWL------ 138

Query: 97  EISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVTDYYGTLNGLW 156
                        E+WN+L   + +  +L   Y+LE  +   KQG L ++ YY     LW
Sbjct: 139 --------LNVVTEMWNDLFSRF-RVSNLPRKYQLEQSIHTLKQGNLDLSTYYTKKKTLW 189

Query: 157 IELDQYQNLKM-KCDSDSTT-LNKFIEKARIFKFLSGLNSEFDPIRVQILGKEQFPSLSE 214
            +L   + L + KC+ +    L +  E +RI +FL GLN  F  IR QIL  +  P L+E
Sbjct: 190 EQLANTRVLTVRKCNCEHVKELLEEAETSRIIQFLMGLNDNFAHIRGQILNMKPRPGLTE 249

Query: 215 VFSIVRGEETRRTVMVEDKSVDGSALASGKGPIKGSTSFGRPNRDDRPNRDDRFNGDDRF 274
           +++++  +E++R V     S   +A      PI                 D + N     
Sbjct: 250 IYNMLDQDESQRLVGNPTLSNPTAAFQVQASPII----------------DSQVNMAQGS 293

Query: 275 NRDDRCTYCKRSGHTKEYCFKLYGRENVLARMSKSKGAPQRRANHTASDMENDGEVPPVP 334
            +  +C+YC + GH  + C+K +G          +KG      N  ++ ++   E P   
Sbjct: 294 YKKPKCSYCNKLGHLVDKCYKKHGYP---PGSKWTKGQTIGSTNLASTQLQPVNETPN-- 348

Query: 335 PAEDVPSLSKAELERLRVFMDSLSKP-----------------SGSCSLTMTGK-SSTFL 376
             E   S  +   ++++  +  LS                   S S S+ M  + S TFL
Sbjct: 349 --EKTDSYEEFSTDQIQTMISYLSTKLHIASASPMPTTSSASISASPSVPMISQISGTFL 406

Query: 377 SL----------NALSTE-----NDWIIDFGATDHMTPHPSHLSSYSTYPGKHYITVANG 421
           SL          +++S E       W+ID GAT H+T +     ++ +     ++ + N 
Sbjct: 407 SLFSNAYYDMLISSVSQEPAVSPRGWVIDSGATHHVTHNRDLYLNFRSLENT-FVRLPND 465

Query: 422 SQNQITGCGNIHLSPSLPLKRVLHVPKLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLAT 481
              +I G G I LS ++ L  VL++P+   NL+S  +LT++L                  
Sbjct: 466 CTVKIAGIGFIQLSDAISLHNVLYIPEFKFNLIS--ELTKEL------------------ 505

Query: 482 GQIIGIAKEQDGLYCLQHEE-----------SKCHQTSSESWNTSQIWLRHKRLGHPPFS 530
             +IG   +   LY L   E           S C + S  S         HKRLGHP +S
Sbjct: 506 --MIGRGSQVGNLYVLDFNENNHTVSLKGTTSMCPEFSVCSSVVVDSVTWHKRLGHPAYS 563

Query: 531 ILRTMFPHLFSKVS-VESFH------CDVCQFSKHHRSTFLPSNNKCAQPFDLVHSDVWG 583
            +  +   L  KV  +   H      C VC  SK    +F    N C+  FDLVH D WG
Sbjct: 564 KIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAAFDLVHIDTWG 623

Query: 584 PSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANFFHMIRTQFGKPIKRLRSD 643
           P S+                   TW++L+K+KS+V  +F  F +M+ TQ+   +K +RSD
Sbjct: 624 PFSVPTNDA--------------TWIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRSD 669

Query: 644 NGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHLLEITRALLFQMNVPKFYW 703
           N  E     F++    +G+V   +C + P+QN V ERK++H+L + RALLFQ N+P  +W
Sbjct: 670 NAHE---LKFTDLFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFW 726

Query: 704 GEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQSRVFGCSAFVHVHGHHRG 763
           G+ VLTA +LINRLP+ VL+N SP   + +  P+         + FGC  +       R 
Sbjct: 727 GDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYE-----SLKTFGCLCYSSTSPKQRH 781

Query: 764 KLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQESESFYPNPQLQGGDTQEAE 823
           K +PRA  C+F+GY    KGYK     +  V IS  V F E    + +  ++  D ++  
Sbjct: 782 KFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPFISSTIK-DDIKD-- 838

Query: 824 SPELSVIPLLQEPLMPSSIPITEDSDDDDNGPEQVPNQNDDNGLELVP 871
                  PLLQ P     +P+ + S  D +     P+Q+  +   LVP
Sbjct: 839 -----FFPLLQFPARTDDLPLEQTSIIDTH-----PHQDVSSSKALVP 876


>At4g23160 putative protein
          Length = 1240

 Score =  457 bits (1177), Expect = e-128
 Identities = 236/538 (43%), Positives = 347/538 (63%), Gaps = 11/538 (2%)

Query: 913  PEVSVPN--PEPSNSYEHNLDDLPIALRK----GKRSCAKYPISQYVSTQNLSVQHQSFI 966
            P  ++ N  PEPS    H     P  L+        S   + ISQ++S + +S  + SF+
Sbjct: 18   PSANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFL 77

Query: 967  SAIDSIRVPTSVQEVLKDKKWIQAMNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKY 1026
              I   + P++  E  +   W  AM++E+ A++   T +I   P +K+ +GCKW+Y +KY
Sbjct: 78   VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137

Query: 1027 RSDGTLDRYKARLVAKGYTQTYGIDYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKN 1086
             SDGT++RYKARLVAKGYTQ  GID+ ETF+PV K+ +V++IL+++A +++ L Q D+ N
Sbjct: 138  NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 1087 AFLHGDLEEEVYMEIPPGYDPTSGR----NKVCKLKKALYGLKQSPRAWFGRFTNAMVSL 1142
            AFL+GDL+EE+YM++PPGY    G     N VC LKK++YGLKQ+ R WF +F+  ++  
Sbjct: 198  AFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGF 257

Query: 1143 GYKQSQGDHTLFIKHTRNGKLTLLLVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKL 1202
            G+ QS  DHT F+K T    L +L VYV+D+II  N++     L+ +L   F+++DLG L
Sbjct: 258  GFVQSHSDHTYFLKITATLFLCVL-VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPL 316

Query: 1203 KYFLGMEVAYSKQGIFISQRKYVLDLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRVHKA 1262
            KYFLG+E+A S  GI I QRKY LDLL ETG LGCKP  VP++ +    +      V   
Sbjct: 317  KYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK 376

Query: 1263 QYQRLVGKLIYLSHTRPDIAYPVSVVSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKK 1322
             Y+RL+G+L+YL  TR DI++ V+ +SQF   P+  H QAV +IL Y+K + G+GL +  
Sbjct: 377  AYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436

Query: 1323 SEQLSMEVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQ 1382
              ++ ++V++DA +      RRST GYCMFLG +L++W+SKKQ VV++SSAEAE+RA++ 
Sbjct: 437  QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 496

Query: 1383 GVCELLRMKIILDDLKIKYEAPMRLFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEK 1440
               E++ +     +L++    P  LFCDN +AI IA N V H+RTKHIE D H ++E+
Sbjct: 497  ATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554


>At1g47650 hypothetical protein
          Length = 1409

 Score =  452 bits (1163), Expect = e-127
 Identities = 230/496 (46%), Positives = 342/496 (68%), Gaps = 12/496 (2%)

Query: 991  MNEEMHALDKNGTRKIVEKPNDKRTVGCKWIYTVKYRSDGTLDRYKARLVAKGYTQTYGI 1050
            ++ E+ A++   T +I   P  K+ VGCKW++++K+ +DG+L+RYKARLVAKGYTQ  G+
Sbjct: 747  VSSEIGAMETTHTWEITTLPAGKKAVGCKWVFSLKFLADGSLERYKARLVAKGYTQKEGL 806

Query: 1051 DYDETFAPVAKMNTVRIILSLAAHFDWELQQFDVKNAFLHGDLEEEVYMEIPPGYDPTSG 1110
            DY +TF+PVAKM T++++L ++A   W L+Q DV NAFL+G+LEEE+YM++P GY    G
Sbjct: 807  DYTDTFSPVAKMTTIKLLLKISASKKWFLKQLDVSNAFLNGELEEEIYMKLPEGYAARKG 866

Query: 1111 ----RNKVCKLKKALYGLKQSPRAWFGRFTNAMVSLGYKQSQGDHTLFIKHTRNGKLTLL 1166
                 N VC+LK+++YGLKQ+ R WF +F+ +++ LG+K++ GDHTLFIK   +G+  ++
Sbjct: 867  ITLPPNSVCRLKRSIYGLKQASRQWFKKFSASLLDLGFKKTHGDHTLFIKEY-DGEFVIV 925

Query: 1167 LVYVNDMIIAGNDELEKQNLRKELAVQFEMKDLGKLKYFLGMEVAYSKQGIFISQRKYVL 1226
            LVYV+D+ IA   E     L ++L  +F+++DLG LKYFLG+E+A ++ GI I QRKY L
Sbjct: 926  LVYVDDIAIASTSEGAAIQLTQDLQQRFKLRDLGDLKYFLGLEIARTEAGISICQRKYAL 985

Query: 1227 DLLKETGKLGCKPMGVPIEQNHKIGSSEEDLRVHKAQYQRLVGKLIYLSHTRPDIAYPVS 1286
            +LL  TG + CKP+ VP+  N K+  ++ DL   + QY+R+VGKL+YL+ TR DI + V+
Sbjct: 986  ELLASTGMVNCKPVSVPMIPNVKMMKTDGDLLDDREQYRRIVGKLMYLTITRLDITFAVN 1045

Query: 1287 VVSQFMHDPQERHLQAVDRILQYLKASPGRGLLFKKSEQLSMEVYTDADYAGSIVDRRST 1346
             + QF   P+  HLQA  R+LQY+K S G+GL +  S  L+++ + D+D+A     RRST
Sbjct: 1046 KLCQFSSAPRTSHLQAAYRVLQYIKGSVGQGLFYSASADLTLKGFADSDWASCPDSRRST 1105

Query: 1347 TGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLRMKIILDDLKIKYEAPMR 1406
            TG+ MF+G +L++WRSKKQ+VV+RSSAEAE+RA+A   CEL+ +  +L  LK  Y  P+ 
Sbjct: 1106 TGFSMFVGDSLISWRSKKQHVVSRSSAEAEYRALALVTCELVWLHTLLMSLKASYLVPV- 1164

Query: 1407 LFCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLNSSLISTQYVPSGLQLADV------ 1460
            L+ D+ +AI IA NPV H+RTKHIE+D H ++EKL++  +   +V +  Q +        
Sbjct: 1165 LYSDSTTAIYIATNPVFHERTKHIELDCHTVREKLDNGELKLLHVRTEDQPSTAAYPPPN 1224

Query: 1461 LTKGLPLERFRELTCK 1476
            L + LP  R    T K
Sbjct: 1225 LAEPLPCPRCNSTTTK 1240



 Score =  234 bits (596), Expect = 4e-61
 Identities = 139/419 (33%), Positives = 212/419 (50%), Gaps = 30/419 (7%)

Query: 388 IIDFGATDHMTPHPSHLSSYSTYPGKHYITVANGSQNQITGCGNIHLSPSLPLKRVLHVP 447
           +ID GA  H++   S   +  T      + +  G   +I+G G + L+  + LK +L +P
Sbjct: 333 VIDSGAIHHVSHDKSLFLNLDTSVVSA-VNLPAGPTVRISGVGTLRLNDDILLKNILFIP 391

Query: 448 KLSNNLLSIHKLTRDLNCAVTFFHSHGVFQDLATGQIIGIAKEQDGLYCLQHEESKCHQT 507
           +   NL+SI  LT D+   V F  +    QD    +++G  +    LY L  E+      
Sbjct: 392 EFRLNLISISSLTDDIGSRVIFDKTSCEIQDPIKARMLGQGRRIANLYVLDIEDPIVSVN 451

Query: 508 SSESWNTSQIWLRHKRLGHPPFSILRTMFPHLFSKVSVE--SFHCDVCQFSKHHRSTFLP 565
           +        I + H+RLGH     L  +   L +       S +C VC  +K  +  F  
Sbjct: 452 A-----VVDISMWHRRLGHASLQRLDVISDSLGTTKPKNKGSDYCHVCHLAKQRKLPFPS 506

Query: 566 SNNKCAQPFDLVHSDVWGPSSISNVSGAKWFVTFIDDCTRITWVFLMKDKSEVFQLFANF 625
            N  C + FDL+H D+WGP S+  V G K+F+T +DD +R TW++L+++KSEV  +F  F
Sbjct: 507 QNKVCNEIFDLLHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYLLRNKSEVLTVFPAF 566

Query: 626 FHMIRTQFGKPIKRLRSDNGKE*VNKNFSEFLTKNGVVHELTCVDAPQQNGVAERKNRHL 685
              +  Q+   +K +RSDN  E     F+    + G+V   +C + P+QN V ERK++H+
Sbjct: 567 IEQVENQYKVRVKAVRSDNAPE---LKFTSLYQQKGIVSFHSCPETPEQNLVVERKHQHI 623

Query: 686 LEITRALLFQMNVPKFYWGEAVLTAAYLINRLPSRVLSNVSPVLVMTSFFPSVPIKSGLQ 745
           L ++RAL+FQ  VP   WG+ VLTA +LINR PS++LSN +P  ++T   P    K    
Sbjct: 624 LNVSRALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLSNKTPYEILTGTVPFYFAKK--- 680

Query: 746 SRVFGCSAFVHVHGHHRGKLDPRAIKCIFIGYASDKKGYKCYHPPSRRVYISMDVTFQE 804
                           R K  PR+  C+F+GY +  KGYK     S  V+IS +V F E
Sbjct: 681 ----------------RHKFQPRSKACVFLGYPAGYKGYKLMDLESHTVFISRNVVFHE 723



 Score =  105 bits (262), Expect = 2e-22
 Identities = 61/194 (31%), Positives = 107/194 (54%), Gaps = 4/194 (2%)

Query: 36  SFRLDGRNYLQWSELVRHTLISRQKISYIEETAPA--ETDPQYDTWREENSLIMTWFWYS 93
           S RLD  NY  W+  +  +L ++ K  +I+ T P   E+D  +  W    S++ +W   S
Sbjct: 79  SHRLDETNYGDWNVAMLISLDAKNKSGFIDGTLPRPLESDKNFRLWSRCKSMVKSWLLNS 138

Query: 94  MIPEISRNYMFFPTAKEIWNNLAQAYSKKQDLSACYELENKVFNSKQGTLSVTDYYGTLN 153
           + P+I R+ +    A +IW +L   ++   +L   Y L  ++ + +QGTLS+++YY  L 
Sbjct: 139 VSPQIYRSILRMNDASDIWRDLHSRFNVT-NLPRTYNLTQEIQDFRQGTLSLSEYYTRLK 197

Query: 154 GLWIELDQYQNLKMKCD-SDSTTLNKFIEKARIFKFLSGLNSEFDPIRVQILGKEQFPSL 212
            LW +L+  + L   C    +  L +  E+A+I K L+GLN  +  IR QI+ K+  PSL
Sbjct: 198 TLWDQLESTEELDDPCICGKAMRLQQKAEQAKIVKLLAGLNDSYAIIRRQIIAKKALPSL 257

Query: 213 SEVFSIVRGEETRR 226
           +EV+ I+  + +++
Sbjct: 258 AEVYHILDQDNSQQ 271


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,479,944
Number of Sequences: 26719
Number of extensions: 1641102
Number of successful extensions: 5758
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4805
Number of HSP's gapped (non-prelim): 426
length of query: 1485
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1373
effective length of database: 8,326,068
effective search space: 11431691364
effective search space used: 11431691364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)