BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0304.11
(1797 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 654 0.0
At2g01840 putative non-LTR retroelement reverse transcriptase 589 e-168
At2g25550 putative non-LTR retroelement reverse transcriptase 580 e-165
At2g31520 putative non-LTR retroelement reverse transcriptase 568 e-162
At4g10830 putative protein 566 e-161
At2g17910 putative non-LTR retroelement reverse transcriptase 555 e-157
At4g09710 RNA-directed DNA polymerase -like protein 537 e-152
At3g31420 hypothetical protein 531 e-150
At1g24640 hypothetical protein 529 e-150
At1g47910 reverse transcriptase, putative 492 e-139
At2g05200 putative non-LTR retroelement reverse transcriptase 475 e-133
At2g16680 putative non-LTR retroelement reverse transcriptase 468 e-131
At2g11240 pseudogene 463 e-130
At3g32110 non-LTR reverse transcriptase, putative 455 e-128
At3g45550 putative protein 421 e-117
At2g41580 putative non-LTR retroelement reverse transcriptase 418 e-116
At2g31080 putative non-LTR retroelement reverse transcriptase 392 e-108
At4g15590 reverse transcriptase like protein 377 e-104
At1g25430 hypothetical protein 333 4e-91
At1g10160 putative reverse transcriptase 313 4e-85
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 654 bits (1688), Expect = 0.0
Identities = 341/927 (36%), Positives = 534/927 (56%), Gaps = 8/927 (0%)
Query: 424 MRLISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVD 483
MR++SWNC+GVG + T R L+EI P ++FL ET+ RRN +E + L F + V+
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 484 PIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWD 543
PIG +GGLAL W +++L S++ I ++ ++K T IYGEP++ R LW+
Sbjct: 61 PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDKEF--YLTCIYGEPVQAERGELWE 118
Query: 544 SISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCK 603
++RL GPW GDFNE + EK G + + S FR ++S L ++ G +
Sbjct: 119 RLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQ 178
Query: 604 YTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPKH-RSG 662
++W N + V + +LDR ++N +W L+P A L + SDHSPLI + V + R
Sbjct: 179 FSWYGNRNDELV-QCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKW 237
Query: 663 RQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADK 722
FKY+ W + + ++ + W+ N + K+ SC+ ++KW++V+ +
Sbjct: 238 AGFKYDKRWVQREGFKDLLCNFWSQQSTKTN--ALMMEKIASCRREISKWKRVSKPSSAV 295
Query: 723 EIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTH 782
I++L+ +L + + D E+A+ K ++ Q + EE FW +SR+ W + GDRNT
Sbjct: 296 RIQELQFKLDAATKQI--PFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTK 353
Query: 783 FFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVP 842
+FHA T RR +NRI +L D G E + +F+ +F SE V E L +
Sbjct: 354 YFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLT 413
Query: 843 KLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHS 902
L+ +NN L+ +T EE++ S++ K PGPDG+NG ++ W +G ++ +V +
Sbjct: 414 PLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQA 473
Query: 903 FFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDII 962
FF + ++ +N+T + L+PKI E +RPIS CN +YK+I K++ RLK L +I
Sbjct: 474 FFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLI 533
Query: 963 TPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKAL 1022
+ Q+AF+K RLI DNILIAHE+ HAL + ++ +AIK D+SKAYDRVEW FLEKA+
Sbjct: 534 SETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAM 593
Query: 1023 LAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSH 1082
GF W+ L+M V+ V Y+ +NG + IP RGLRQGDPLSPYLFV+ ++L
Sbjct: 594 RGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVK 653
Query: 1083 MILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQR 1142
M+ A+ + I G+K++ P I+HL FADDS+ + K + ++++ +S AS QR
Sbjct: 654 MLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQR 713
Query: 1143 INTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMK 1202
+N KSS+ KHI + + I G YLGLP + SK L+++K+R+
Sbjct: 714 VNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLG 773
Query: 1203 EKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKS 1262
+K+ GW+ L+ GKE+L+K+V ++PTY M+ PK C++++S++A FWW N K+
Sbjct: 774 KKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEG 833
Query: 1263 RGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDS 1322
RG+H K W L+ K GG+GF+E N+A + KQ WR+ +L+A+V K+ YF S
Sbjct: 834 RGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKS 893
Query: 1323 SFLDATPKPGDSWMWRANQRQELLDRQ 1349
L+A S+ W++ ++L +Q
Sbjct: 894 DPLNAPLGSRPSFAWKSIYEAQVLIKQ 920
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 589 bits (1519), Expect = e-168
Identities = 317/939 (33%), Positives = 516/939 (54%), Gaps = 31/939 (3%)
Query: 413 GGGH*SAPNVSMRLISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKF 472
G G ++P MR+ WNC+G+G T R L+E+ +LFL+ET+ + N L
Sbjct: 355 GAGTTTSP---MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGV 411
Query: 473 ALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGE 532
+ F + + P G +GGL ++W K +++++ + + + + K + IYG
Sbjct: 412 KMGFEDMCIISPRGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKN--FNFYLSCIYGH 469
Query: 533 PLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSN 592
P+ R LW+ + R+ GPW GDFNE L +EK G +S SL F + ++
Sbjct: 470 PIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCC 529
Query: 593 ALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLI 652
+ ++ KG Y+W+ R+ LDRV N W++ +P LP+ SDH+P+I
Sbjct: 530 NMKDLKSKGNPYSWVGK-RQNETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVI 588
Query: 653 LDPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWET-LQNKVKSCQIGLT 710
+D + + R QF+Y+ + +D V+ WN +G +D K+ C+ L
Sbjct: 589 IDIAEEVCTKRGQFRYDRRHFQFEDFVDSVQRGWN---RGRSDSHGGYYEKLHCCRQELA 645
Query: 711 KWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSR 770
KW++ T + ++IE LK R+ + + H + + + + + Q +R EEL+W +SR
Sbjct: 646 KWKRRTKTNTAEKIETLKYRVDAAERD--HTLPHQTILRLRQDLNQAYRDEELYWHLKSR 703
Query: 771 LQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQ 830
+W GDRNT FF+A+T R+ RNRI + D G + + + ++F +F + Q
Sbjct: 704 NRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQ 763
Query: 831 VTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWN 890
+ +E +S + + +N++L+++VTD+E++ ++ + +APG DG F+ W+
Sbjct: 764 TSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWD 823
Query: 891 VVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVI 950
++G +VC +V FF + + IN+T + L+PKI + + YRPIS C YKIISK++
Sbjct: 824 LIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKIL 883
Query: 951 VARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAY 1010
+ RLK L D+I+ +Q+AF+ + I DN+L+AHE+ H+L+ R ++A+K D+SKAY
Sbjct: 884 IKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAY 943
Query: 1011 DRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSP 1070
DRVEW FLEK ++ GF WV +M V VSY+ +NG K P RG+RQGDPLSP
Sbjct: 944 DRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSP 1003
Query: 1071 YLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQ 1130
YLF+ +VLS+M+ +A+ I G+K++ I+HL FADDSL F +A+ Q
Sbjct: 1004 YLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLAL 1063
Query: 1131 LLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSK 1190
+ + AS Q+IN +KSS+ + IPT+ + ++ + I G YLGLP GR K
Sbjct: 1064 IFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRK 1123
Query: 1191 TRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSL 1250
+I ++KE+ GW L+ AGKE++IK++ ++P Y+M P C E++SL
Sbjct: 1124 VELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSL 1183
Query: 1251 VARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLV 1310
+ FWW + EG +GF++ H N A + KQAWRI P +L+
Sbjct: 1184 ITAFWWG------------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLL 1225
Query: 1311 AQVMKALYFPDSSFLDATPKPGDSWMWRANQRQELLDRQ 1349
A++ K LY+P++++L A S+ W + Q +LL +Q
Sbjct: 1226 ARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQ 1264
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 580 bits (1494), Expect = e-165
Identities = 309/908 (34%), Positives = 490/908 (53%), Gaps = 11/908 (1%)
Query: 433 GVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGLA 492
G+G T L + ILFL+ET + +K+ +L + L F N P G +GGLA
Sbjct: 391 GIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLA 450
Query: 493 LFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLA 552
L W ++ ++ ++ I +T K + +YG P + R LW ++ +
Sbjct: 451 LMWKNNVSLSLISQDERLIDSHVTFNNKSF--YLSCVYGHPTQSERHQLWQTLEHISDNR 508
Query: 553 QGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPRE 612
W +GDFNE L EK G + + + FR+ V + ++ KG +++W+ R
Sbjct: 509 NAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RH 567
Query: 613 GFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLIL---DPVPKHRSGRQFKYEA 669
+ LDRV N +W + +P+A + L SDH P+++ + P R + F+++
Sbjct: 568 THTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFP--RRSKLFRFDN 625
Query: 670 FWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKA 729
+ ++V+ +W T + + ++ SC+ + + + + +++ I+KL++
Sbjct: 626 RLIDIPTFKRIVQTSWRTNRNSRST--PITERISSCRQAMARLKHASNLNSEQRIKKLQS 683
Query: 730 RLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTI 789
L+ E ++D + Q + + + + EE++W +SR QW + GD+NT +FHA T
Sbjct: 684 SLNRAM-ESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTK 742
Query: 790 QRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDL 849
R +NR++ + D G G + + + D F IF + + + + +
Sbjct: 743 TRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTV 802
Query: 850 NNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTL 909
N L + +D EI + KAPGPDGL F+K W++VG +V V FF TS +
Sbjct: 803 NLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFM 862
Query: 910 SPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAF 969
P IN T + ++PKI + + YRPI+ CN LYK+ISK +V RLK LN I++ +Q+AF
Sbjct: 863 KPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAF 922
Query: 970 IKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCG 1029
I R+I DN++IAHE+ H+L+ R R K ++A+K D+SKAYDRVEW+FLE + +GFC
Sbjct: 923 IPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCN 982
Query: 1030 PWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKN 1089
W+ +M V+ V Y +NG P RG+RQGDPLSPYLF+L D+LSH+I +
Sbjct: 983 KWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRAS 1042
Query: 1090 QGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSS 1149
G ++G+++ P ITHL FADDSL F +A + + + + S Q+IN KS
Sbjct: 1043 SGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSM 1102
Query: 1150 MSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWK 1209
++ + ++++ I +IP G YLGLP +GR K +I +R+K++ + W
Sbjct: 1103 ITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWS 1162
Query: 1210 EVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKD 1269
L+ AGKE+++KSV ++P YAM+ PKG E++SL+ FWW RGI
Sbjct: 1163 ARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVA 1222
Query: 1270 WHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATP 1329
W L SKKEGG+GFR+ N A + KQAWR+ P++L A+VMKA YF D S LDA
Sbjct: 1223 WKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKV 1282
Query: 1330 KPGDSWMW 1337
+ S+ W
Sbjct: 1283 RKQQSYGW 1290
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 568 bits (1465), Expect = e-162
Identities = 301/883 (34%), Positives = 479/883 (54%), Gaps = 11/883 (1%)
Query: 458 METRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITE 517
+ET + +K+ +L + L F N P G +GGLAL W ++ ++ ++ I +T
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTF 249
Query: 518 KEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQ 577
K + +YG P + R LW ++ + W +GDFNE L EK G +
Sbjct: 250 NNKSF--YLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMR 307
Query: 578 SQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHAL 637
+ + FR+ V + ++ KG +++W+ R + LDRV N +W + +P+A
Sbjct: 308 EEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHTVKCCLDRVFINSAWTATFPYAE 366
Query: 638 VVALPVVSSDHSPLIL---DPVPKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGEND 694
L SDH P+++ + P R + F+++ + ++V+ +W T +
Sbjct: 367 TEFLDFTGSDHKPVLVHFNESFP--RRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRST 424
Query: 695 WETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQI 754
+ ++ SC+ + + + + +++ I+KL++ L+ E ++D + Q + +
Sbjct: 425 --PITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAM-ESTRRVDRQLIPQLQESL 481
Query: 755 RQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGV 814
+ + EE++W +SR QW + GD+NT +FHA T R +NR++ + D G G + +
Sbjct: 482 AKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEI 541
Query: 815 MENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKA 874
+ D F IF + + + + +N L + +D EI + KA
Sbjct: 542 GNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKA 601
Query: 875 PGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYR 934
PGPDGL F+K W++VG +V V FF TS + P IN T + ++PKI + + YR
Sbjct: 602 PGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYR 661
Query: 935 PISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGR 994
PI+ CN LYK+ISK +V RLK LN I++ +Q+AFI R+I DN++IAHE+ H+L+ R R
Sbjct: 662 PIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKR 721
Query: 995 EHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSR 1054
K ++A+K D+SKAYDRVEW+FLE + +GFC W+ +M V+ V Y +NG
Sbjct: 722 VSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHG 781
Query: 1055 KYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDS 1114
P RG+RQGDPLSPYLF+L D+LSH+I + G ++G+++ P ITHL FADDS
Sbjct: 782 YITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDS 841
Query: 1115 LVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWE 1174
L F +A + + + + S Q+IN KS ++ + ++++ I +IP
Sbjct: 842 LFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQG 901
Query: 1175 EPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAM 1234
G YLGLP +GR K +I +R+K++ + W L+ AGKE+++KSV ++P YAM
Sbjct: 902 GGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAM 961
Query: 1235 AVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAH 1294
+ PKG E++SL+ FWW RGI W L SKKEGG+GFR+ N A
Sbjct: 962 SCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDAL 1021
Query: 1295 MTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMW 1337
+ KQAWR+ P++L A+VMKA YF D S LDA + S+ W
Sbjct: 1022 LAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGW 1064
>At4g10830 putative protein
Length = 1294
Score = 566 bits (1458), Expect = e-161
Identities = 322/909 (35%), Positives = 488/909 (53%), Gaps = 11/909 (1%)
Query: 432 RGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGL 491
+G+G T +L + K +LFL+ET + I L L F N P G +GGL
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGL 429
Query: 492 ALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPL 551
AL W + L + +I V I+ I + +YG P + R +LW L
Sbjct: 430 ALLWKDSVRLSNLYQDDRHIDVHISINN--INFYLSRVYGHPCQSERHSLWTHFENLSKT 487
Query: 552 AQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPR 611
PW +GDFNE L +EK G + + + FR+ V + L +I G +++W+ R
Sbjct: 488 RNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-R 546
Query: 612 EGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILD-PVPKHRSGRQFKYEAF 670
+ LDR N L+P A + L SDH PL L + R R F+++
Sbjct: 547 HSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKR 606
Query: 671 WNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKAR 730
E V+ WN G+ + L ++V++C+ + K + + + I +L+A
Sbjct: 607 LLEVPHFKTYVKAGWNKAINGQR--KHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAA 664
Query: 731 LSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQ 790
L + + + + ++ + ++ +R EE +W +SR QW + GDRNT FFHA T
Sbjct: 665 LDKAMSSVN-RTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKT 723
Query: 791 RRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSE-QVTQIQECLSCVPKLIPTDL 849
R NR+ +KD G G + + + + F +++S + I + P ++ +
Sbjct: 724 RFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKP-IVTEQI 782
Query: 850 NNKLMETVTDEEI-KVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTST 908
N+ L + ++D EI + H D KAPGPDGL F+K+ W +VGP+V V FF TS
Sbjct: 783 NDDLTKDLSDLEIYNAICHIGDD-KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSY 841
Query: 909 LSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSA 968
+ IN T + ++PKI + E + YRPI+ CN LYKIISK +V RLKG L+ I++ +Q+A
Sbjct: 842 MKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAA 901
Query: 969 FIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFC 1028
FI RL+ DN++IAHE+ H+L+ R R + ++A+K D+SKAYDRVEW FLE + +GF
Sbjct: 902 FIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFS 961
Query: 1029 GPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAK 1088
W+ +M V+ V+Y VNG PQRG+RQGDPLSPYLF+L D+L+H+I
Sbjct: 962 ETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRV 1021
Query: 1089 NQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKS 1148
+G I+GI++ P +THL FADDSL F ++ + + + + S Q+IN SKS
Sbjct: 1022 AEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKS 1081
Query: 1149 SMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGW 1208
++ + + ++ NI I + G YLGLP +GR K +I ER+K++ + W
Sbjct: 1082 MITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSW 1141
Query: 1209 KEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLK 1268
L+ AGKE+++KSV S+P YAM+ P E+++L+ FWW N K R I
Sbjct: 1142 SAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWI 1201
Query: 1269 DWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDAT 1328
W L SKKEGG+GFR+ N A + KQ WR+ N P++L A++MKA YF + S LDA
Sbjct: 1202 AWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAK 1261
Query: 1329 PKPGDSWMW 1337
+ S+ W
Sbjct: 1262 RQRYQSYGW 1270
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 555 bits (1429), Expect = e-157
Identities = 306/890 (34%), Positives = 485/890 (54%), Gaps = 10/890 (1%)
Query: 452 PSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYI 511
P ILFLMET+ ++ + ++ L + V+P G +GGLA+FW +E L +++N +
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYADKNLM 66
Query: 512 HVMITEKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEK 571
+ ++ + KV + +YG P+ R LW+ ++ + WC +GDFN+ EK
Sbjct: 67 DLQVSSRNKVWFI--SCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEK 124
Query: 572 DGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRS 631
G +S S F + + ++ + G +TW N + +V + KLDR N +W S
Sbjct: 125 LGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQWV-QCKLDRCFGNPAWFS 183
Query: 632 LYPHALVVALPVVSSDHSPLILDPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQ 690
++P+A L SDH P+++ + R QF+Y+ ++ C +V+ +WN+
Sbjct: 184 IFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRLDDDPYCIEVIHRSWNSA-M 242
Query: 691 GENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKID-WNEMAQ 749
+ + + ++ C+ ++ W+ + + A I++L+ L + E +I W +
Sbjct: 243 SQGTHSSFFSLIE-CRRAISVWKHSSDTNAQSRIKRLRKDLDA---EKSIQIPCWPRIEY 298
Query: 750 FKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIE 809
K Q+ + EELFW +SR +W GD+NT FFHAT R +N + L D
Sbjct: 299 IKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFT 358
Query: 810 GQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSM 869
+ + F+ +F S + L + + +++N+ L++ VT+ E+ S+
Sbjct: 359 RNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSI 418
Query: 870 DSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEM 929
+ APGPDG LFF+ HW++V ++ + + FF T L N T + L+PKI S +
Sbjct: 419 NKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQR 478
Query: 930 ANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHAL 989
+ RPIS C+ LYKIISK++ RLK L I++ QSAF+ RLI DNIL+AHE+ H+L
Sbjct: 479 MSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSL 538
Query: 990 QHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVN 1049
+ R K+H+A K DMSKAYDRVEW FLE + A GF W+S +MN V VSY +N
Sbjct: 539 RTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLIN 598
Query: 1050 GYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLF 1109
G IP RG+RQGDPLSP LFVL + L H++ +A+ G I GI+ + HL
Sbjct: 599 GQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLL 658
Query: 1110 FADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQ 1169
FADD+L+ KAT+QE +Q L+ + S Q IN +KS+++ K++ +K + +
Sbjct: 659 FADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSG 718
Query: 1170 IPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSI 1229
I G YLGLP SK +IKE+++ ++ GW L+Q GKEVL+KS+ ++
Sbjct: 719 ISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALAL 778
Query: 1230 PTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHL 1289
P Y M+ PK C++L +++ FWW++ ++ R IH W LT K +GG GF++
Sbjct: 779 PVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQC 838
Query: 1290 QNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
N A + KQAWR+ +L ++V ++ YF +S FL AT S+ WR+
Sbjct: 839 FNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRS 888
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 537 bits (1384), Expect = e-152
Identities = 316/932 (33%), Positives = 484/932 (51%), Gaps = 50/932 (5%)
Query: 458 METRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITE 517
MET+ + I + + +++ F + P G +GGLAL+W + VEIL++ N+I
Sbjct: 1 METKNQDEFISKTFDWMGYAHRFTIPPEGLSGGLALYWKENVEVEILEAAPNFI------ 54
Query: 518 KEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQ 577
R WD IS L W GDFN+ L EK G +
Sbjct: 55 ------------------DNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLR 96
Query: 578 SQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHAL 637
+ FRSFV N L +I+ G +W F+ + +LDR L N SW L+P +
Sbjct: 97 WEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSHFI-KSRLDRALGNCSWSELFPMSK 155
Query: 638 VVALPVVSSDHSPLILD-PVPKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWE 696
L SDH PL+ P + + F+++ E ++ +V++ W Q +
Sbjct: 156 CEYLRFEGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQ-----D 210
Query: 697 TLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQ 756
++ K+ C+ + KW K S + K I+K + L S + D D + + ++
Sbjct: 211 SVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSADIP--DPSLIGSITQELEA 268
Query: 757 LWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVME 816
+RQEELFW SR+QW GDRN +FHATT RR N + ++DG+G +E +
Sbjct: 269 AYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIAS 328
Query: 817 NITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPG 876
I+ +FQ IF + + +Q + +I + N +L++ + EIK S+ + KAPG
Sbjct: 329 TISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPG 388
Query: 877 PDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPI 936
PDG + FF +W+++ +V + SFF S LSP +NET V L+PKI + + YRPI
Sbjct: 389 PDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPI 448
Query: 937 SCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREH 996
+ CN YKI++K++ RL+ L+++I+ +QSAF+ R I DN+LI HEI H L+ G +
Sbjct: 449 ALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKK 508
Query: 997 KDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKY 1056
+AIK DMSKAYDR++W FL++ L+ GF W+ VM V VSY + +NG
Sbjct: 509 YCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSV 568
Query: 1057 IPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLV 1116
+P RGLRQGDPLSPYLF+L +VLS + +A+ +G + GI+++ +P + HL FADD++
Sbjct: 569 VPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMF 628
Query: 1117 FAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEP 1176
F K +L + AS Q IN +KS+++ S P +K ++ +I
Sbjct: 629 FCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGI 688
Query: 1177 GHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAV 1236
G YLGLP +GR K + I +R++++ W L+ AGK++L+K+V+ S+P+YAM
Sbjct: 689 GKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMC 748
Query: 1237 TPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMT 1296
P CK++ S++ RFWW + R + W LT EGG+GFRE
Sbjct: 749 FKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------A 801
Query: 1297 KQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPG-DSWMWRANQRQELLDRQRNLGCR 1355
K +WRI PH+L+++V+ Y SSF+D + P S WR L R
Sbjct: 802 KLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRG----ILAGRDLLRKGL 857
Query: 1356 GWSYHKLMGGQMACLR*LTQSMGKRKTPKAPI 1387
GWS GQ + T++ +P+ PI
Sbjct: 858 GWSI-----GQGDSINVWTEAWLSPSSPQTPI 884
>At3g31420 hypothetical protein
Length = 1491
Score = 531 bits (1368), Expect = e-150
Identities = 303/909 (33%), Positives = 482/909 (52%), Gaps = 56/909 (6%)
Query: 445 EINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEIL 504
EI K I+ L ET+ + ++I + L F N V P G +GGL +FWN + +
Sbjct: 202 EICRKNLLDIICLSETKQQDDRIRDVGAELGFCNHVTVPPDGLSGGLVVFWNSSVDIFLC 261
Query: 505 DSNQNYIHVMITEKEKVIGAEY-TFIYGEPLRQRRQALWDSISRLKPLAQGP-WCCLGDF 562
SN N + + + E G+ Y +F+YG P R LW+ + RL QG W +GDF
Sbjct: 262 FSNSNLVDLHVKSNE---GSFYLSFVYGHPNPSHRHHLWERLERLNTTRQGTAWFIMGDF 318
Query: 563 NETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDR 622
NE L EK G + +++ FR+ V ++ G +++W + VT LDR
Sbjct: 319 NEILSNREKRGGRLRPERTFQDFRNMVRGCNFTDLKSVGDRFSWAGKRGDHHVTCS-LDR 377
Query: 623 VLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPKHRSGRQF-KYEAFWNEHKDCSKVV 681
++N W +L+P + V + SDH PL+ + + R F Y++ + +VV
Sbjct: 378 TMANNEWHTLFPESETVFMEYGESDHRPLVTNISAQKEERRGFFSYDSRLTHKEGFKQVV 437
Query: 682 EDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHK 741
+ W+ +L K+ C+ +++W+K A++ I+ ++ HK
Sbjct: 438 LNQWHRRNGSFEGDSSLNRKLVECRQAISRWKKNNRVNAEERIKIIR-----------HK 486
Query: 742 IDW---------NEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRR 792
+D E Q + + Q + EE++W T+SR +W GDRNT +FH+TT RR
Sbjct: 487 LDRAIATGTATPRERRQMRQDLNQAYADEEIYWQTKSRSRWLNAGDRNTRYFHSTTKTRR 546
Query: 793 GRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQ--ECLSCVPKLIPTDLN 850
RNR+ ++D G G E + + ++F ++KS T ++ + + I ++N
Sbjct: 547 CRNRLLSVQDSDGDICRGDENIAKVAINYFDDLYKSTPNTSLRYADVFQGFQQKITDEIN 606
Query: 851 NKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLS 910
L+ VT+ EI+ S+ + P PDG F++ W + +V V FF S L
Sbjct: 607 EDLIRPVTELEIEESVFSVAPSRTPDPDGFTADFYQQFWPDIKQKVIDEVTRFFERSELD 666
Query: 911 PCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFI 970
N T + L+PK+ + ++RPI+ CN YKIISK++V RLK L IT NQ+AF+
Sbjct: 667 ERHNHTNLCLIPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAITENQAAFV 726
Query: 971 KDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGP 1030
RLI +N +IAHE+++AL+ R R+ ++A+K D++KAYDR+EW+FLE+ + GF
Sbjct: 727 PGRLITNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETMRQMGFNTK 786
Query: 1031 WVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQ 1090
W+ +M V V + +NG P+RG+R GDPLSPYLF+L +VLSHMI QA+
Sbjct: 787 WIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVLSHMIKQAEIN 846
Query: 1091 GHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSM 1150
++GI+LS P I+HL FADDS+ F A Q+ S
Sbjct: 847 KKLKGIRLSTQGPFISHLLFADDSIFFTLANQR-------------------------SC 881
Query: 1151 STSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKE 1210
+ K T K +M ++ I G YLGLP + + K +I E++K+K GW +
Sbjct: 882 TAIKEPDT--KRRMRHLLGIHNEGGEGKYLGLPEQFNKKKKELFNYIIEKVKDKTQGWSK 939
Query: 1211 VLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDW 1270
L+Q GKEVL+K+V ++P Y+M + K C+E+DSL+ARFWWS+ +++G+H W
Sbjct: 940 KFLSQGGKEVLLKAVALAMPVYSMNIFKLTKEVCEEIDSLLARFWWSSGNETKGMHWFTW 999
Query: 1271 HSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPK 1330
++ KKEGG+GF+E NLA + KQ W + P+ L+A+V++ YFP+++ ++A
Sbjct: 1000 KRMSIPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPETNVMNAVQG 1059
Query: 1331 PGDSWMWRA 1339
S++W++
Sbjct: 1060 RRASFVWKS 1068
>At1g24640 hypothetical protein
Length = 1270
Score = 529 bits (1363), Expect = e-150
Identities = 297/880 (33%), Positives = 479/880 (53%), Gaps = 14/880 (1%)
Query: 464 RNKIERLKFALHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIG 523
R+ + ++ L + + V+P+G GGLAL W V++ ++N + + + +
Sbjct: 4 RDDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQV--QFGAVN 61
Query: 524 AEYTFIYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLN 583
+ +YG+P R +R W+ ISR+ + WC GDFN+ L+ EK+G +S
Sbjct: 62 FCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCK 121
Query: 584 RFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPV 643
F + L + G +TW + ++ + +LDR N W +P + L
Sbjct: 122 AFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWI-QCRLDRAFGNKEWFCFFPVSNQTFLDF 180
Query: 644 VSSDHSPLILDPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKV 702
SDH P+++ + S R QF+++ + +D + + W+ G N ++ +++
Sbjct: 181 RGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI--SVADRL 238
Query: 703 KSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDW---NEMAQFKAQIRQLWR 759
++C+ L+ W+K + +I +L+A L E + W ++ K + + +R
Sbjct: 239 RACRKSLSSWKKQNNLNSLDKINQLEAAL-----EKEQSLVWPIFQRVSVLKKDLAKAYR 293
Query: 760 QEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENIT 819
+EE +W +SR +W + G+RN+ +FHA Q R R RI +LKD G+ + E
Sbjct: 294 EEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAA 353
Query: 820 DHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDG 879
+F +FKS + + S + + +N L+ V+ +EIK S+ APGPDG
Sbjct: 354 AYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDG 413
Query: 880 LNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCC 939
++ LFF+ +W+ VG +V S V FF + N T + L+PK RPIS C
Sbjct: 414 MSALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLC 473
Query: 940 NYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDH 999
+ LYKIISK++ RL+ L +I++ QSAF+ +RLI DNIL+AHE+ H+L+ R +
Sbjct: 474 SVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEF 533
Query: 1000 LAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQ 1059
+A+K DMSKAYDRVEW +L LL+ GF WV+ +M V V+Y +N I Q
Sbjct: 534 MAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQ 593
Query: 1060 RGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAK 1119
RGLRQGDPLSP+LFVL + L+H++ +A+ +G ++GI+ S + P + HL FADDSL K
Sbjct: 594 RGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCK 653
Query: 1120 ATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHY 1179
A+++++ ++L + +A+ Q IN +KSS++ + + LK + I T G Y
Sbjct: 654 ASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTY 713
Query: 1180 LGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPF 1239
LGLP + SK L ++K+R+KEK+ W L+Q GKEVL+KSV ++P +AM+
Sbjct: 714 LGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKL 773
Query: 1240 PKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQA 1299
P C+ L+S +A FWW + SR IH + W L K GG+GFR+ N A + KQA
Sbjct: 774 PITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQA 833
Query: 1300 WRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
WR+ + P L+++++K+ YF + FLDA S+ WR+
Sbjct: 834 WRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRS 873
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 492 bits (1266), Expect = e-139
Identities = 265/698 (37%), Positives = 389/698 (54%), Gaps = 5/698 (0%)
Query: 643 VVSSDHSPLILDPVPKHRSGRQ-FKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNK 701
+++SDHSP+I K G+Q F+++ W + + WN G + + ++ K
Sbjct: 1 MLASDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLD-SGFREGQFVE-K 58
Query: 702 VKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQE 761
+ +C+ ++KW+K + IE LKA L +D + E+ + ++++ +R E
Sbjct: 59 LTNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSRE--EITELTLRLKEAYRDE 116
Query: 762 ELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDH 821
E +W +SR W + GD N+ FFHA T QRR RNRI L D G W + + +
Sbjct: 117 EQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSY 176
Query: 822 FQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLN 881
FQ +F + E L V LI +N+ L T+ E++ + KAPGPDG+
Sbjct: 177 FQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMT 236
Query: 882 GLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNY 941
LFF+ W ++ ++ S+V+SF +N T + L+PK + RPIS CN
Sbjct: 237 ALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNV 296
Query: 942 LYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLA 1001
YK+ISK++ RLK L ++I+ QSAF+ RLI DNILIA E+FH L+ +A
Sbjct: 297 GYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMA 356
Query: 1002 IKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRG 1061
IK DMSKAYD+VEW F+E L GFC W+S +M + V YK +NG IP+RG
Sbjct: 357 IKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERG 416
Query: 1062 LRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKAT 1121
LRQGDPLSPYLF+L +VL I +A+ Q I GIK++ +P ++HL FADDSL F KA
Sbjct: 417 LRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKAN 476
Query: 1122 QQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLG 1181
+++ +++L + S S Q+IN SKSS+ + +K + I I G YLG
Sbjct: 477 KEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLG 536
Query: 1182 LPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPK 1241
LP G SKT+ +++++R++ +I GW L++ GKEV+IKSV ++P Y M+ PK
Sbjct: 537 LPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPK 596
Query: 1242 GFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWR 1301
+L S VA+FWWS+N SRG+H W L SK +GG+GFR N A + KQ WR
Sbjct: 597 AITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWR 656
Query: 1302 IHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
+ P +L A+V K YF S+ LD+ S+ WR+
Sbjct: 657 LITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRS 694
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 475 bits (1222), Expect = e-133
Identities = 261/779 (33%), Positives = 413/779 (52%), Gaps = 11/779 (1%)
Query: 563 NETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFVTREKLDR 622
NE L EK G P+ Q S FRSF+ N L ++ G ++W + FV R++LDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRYDWFV-RQRLDR 94
Query: 623 VLSNWSWRSLYPHALVVALPVVSSDHSPLIL--DPVPKHRSGRQFKYEAFWNEHKDCSKV 680
+SN SW +P L SDH PL++ D R G QF+++ ++ + +
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRG-QFRFDNRLRDNDVVNAL 153
Query: 681 VEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHH 740
+++ W ++ K+ C+ + W ++ + + IEK + L D
Sbjct: 154 IQETWTNAGDA-----SVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPP 208
Query: 741 KIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRL 800
+ A + ++ EE FW RSR+ W GDRNT +FHA T RR +NR+ +
Sbjct: 209 NP--TTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVM 266
Query: 801 KDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDE 860
+D G + + + I+ +FQ IF SE + ++ N+ L DE
Sbjct: 267 EDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDE 326
Query: 861 EIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVAL 920
E+K S+++ KAPGPDG F+ ++W+++ +V + FF + +NET + L
Sbjct: 327 EVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRL 386
Query: 921 VPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNIL 980
+PK YRPI+ CN YKI++K++ R++ L +I+ NQSAF+ R+I DN+L
Sbjct: 387 IPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVL 446
Query: 981 IAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVR 1040
I HE+ H L+ + +A+K DMSKAYDRVEW+FL+K L +GF W+ V+ V
Sbjct: 447 ITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVT 506
Query: 1041 GVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSP 1100
VSY + +NG K +P RGLRQGDPLSP LF+L +VLS + +A+ + G+++S
Sbjct: 507 SVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSI 566
Query: 1101 STPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLL 1160
+ P + HL FADD++ F+K+ + ++L+ + AS Q IN KSS++ S P +
Sbjct: 567 NGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSV 626
Query: 1161 KTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEV 1220
K Q+ I +I G YLGLP +GR K I +++++K W L+QAGK+V
Sbjct: 627 KGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQV 686
Query: 1221 LIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEG 1280
++K+V+ S+P Y+M+ P C+++ SL+ RFWW R W LT K G
Sbjct: 687 MLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAG 746
Query: 1281 GMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
G+GFR+ N + + K WR+ N+P +L+++++ Y SSF++ S WR+
Sbjct: 747 GLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRS 805
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 468 bits (1205), Expect = e-131
Identities = 272/869 (31%), Positives = 454/869 (51%), Gaps = 23/869 (2%)
Query: 474 LHFSNFFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEP 533
L + F ++P+G +GGLA+FW ++ L ++N + + +++ +K + +YG P
Sbjct: 14 LGYDYFHTIEPVGKSGGLAIFWKNHLEIDFLFEDKNLLDLKVSQGKK--SWFVSCVYGNP 71
Query: 534 LRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNA 593
+ R L D +S + WC +GDFN+ L K G + S F++ + +
Sbjct: 72 VLHLRYLLLDKLSSIGVQRNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCD 131
Query: 594 LANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLIL 653
+ + G +TW + ++ + KLDR N W +++ ++ L + S H P+++
Sbjct: 132 MHQMGSSGNSFTWGGTRNDQWI-QCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLV 190
Query: 654 DPVPKHRSGR-QFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKW 712
+ V R QF Y+ + E C+ +W G +D + ++ C+ ++ W
Sbjct: 191 NFVNDQEVFRGQFCYDKRFAEDPQCAASTLSSW--IGNGISDVSSSMLRMVKCRKAISGW 248
Query: 713 QKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQ 772
+K + A I +L++ L ++ + W+ ++ + Q+ +R+EE FW +S+ +
Sbjct: 249 KKNSDFNAQNRILRLRSELDEEKSKQYPC--WSRISVIQTQLGVAFREEESFWRLKSKDK 306
Query: 773 WAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGS--WIEGQEGVMENITDHFQLIFKSEQ 830
W GDRN+ FF A R +N + L D G+ + ++G + ++ +F+ +F S
Sbjct: 307 WLFGGDRNSKFFQAMVKANRTKNSLRFLVDENGNEHTLNREKGNIASV--YFENLFMSSY 364
Query: 831 VTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWN 890
Q L + ++N +L + VT+ EI S++ AP + L +
Sbjct: 365 PANSQSALDGFKTRVSEEMNQELTQAVTELEIHSAVFSINVESAP--EKLECCQGSDYIE 422
Query: 891 VVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVI 950
++G FF T L N T + L+PK + + + RPIS C+ LYKIISK++
Sbjct: 423 ILG---------FFETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKIL 473
Query: 951 VARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAY 1010
+LK L I++P+QSAF +RLI DNILIAHEI H+L+ + K+ + K DMSKAY
Sbjct: 474 SFKLKKHLPSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAY 533
Query: 1011 DRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSP 1070
DRVEW FL++ L+A GF W+S +M V V+Y +NG P+RG+RQGDP+SP
Sbjct: 534 DRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISP 593
Query: 1071 YLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQ 1130
+LFVL + L H++ QA+N + GI+ + S P + HL F DD+ + +AT+ + +
Sbjct: 594 FLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMML 653
Query: 1131 LLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSK 1190
L+ + S Q IN KSS++ + K + N I G YLGLP SK
Sbjct: 654 CLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSK 713
Query: 1191 TRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSL 1250
+IKE+++ ++GW + L+Q GKE+L+KS+ ++P Y M PKG C +L S+
Sbjct: 714 QDLFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSV 773
Query: 1251 VARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLV 1310
+ FWW++ + S IH LT K GG GF++ N A + KQAWR+ + ++V
Sbjct: 774 MMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIV 833
Query: 1311 AQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
+Q+ K+ YF ++ FL+A S+ WR+
Sbjct: 834 SQIFKSRYFMNTDFLNARQGTRPSYTWRS 862
>At2g11240 pseudogene
Length = 1044
Score = 463 bits (1192), Expect = e-130
Identities = 250/735 (34%), Positives = 404/735 (54%), Gaps = 28/735 (3%)
Query: 611 REGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILD-PVPKHRSGRQFKYEA 669
R V +LDR LSN +W YP + + L SDH PL+ + K + F+Y+
Sbjct: 22 RHDHVVHCRLDRALSNGAWAEDYPASRCIYLCFEGSDHRPLLTHFDLSKKKKKGVFRYDR 81
Query: 670 FWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKA 729
+ + + +V++AWN D + ++ K+ C++ + KW + + K IE+ +
Sbjct: 82 RLKNNDEVTALVQEAWNLY-----DTDIVEEKISRCRLEIVKWSRAKQQSSQKLIEENRQ 136
Query: 730 RLS-SMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATT 788
+L +M ++DH++ ++ + ++ EE +W RSR W GD+N+ +FHA T
Sbjct: 137 KLEEAMSSQDHNQ---ELLSTINTNLLLAYKAEEEYWKQRSRQLWLALGDKNSGYFHAIT 193
Query: 789 IQRRGRNRIHRL-----KDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECLSCVPK 843
RGR I++ +DG + E G++ I+++FQ +F + + + +
Sbjct: 194 ---RGRTVINKFSVIEKEDGVPEYEEA--GILNVISEYFQKLFSANEGARAATIKEAIKP 248
Query: 844 LIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSF 903
I + N EEIK S+ + KAPGPDG + FF+++W VGP + + SF
Sbjct: 249 FISPEQN--------PEEIKSACFSIHADKAPGPDGFSASFFQSNWMTVGPNIVLEIQSF 300
Query: 904 FNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIIT 963
F++STL P IN+T + L+PKI SL+ YRPI+ C YKIISK++ RL+ L +II+
Sbjct: 301 FSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIIS 360
Query: 964 PNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALL 1023
NQSAF+ R DN+LI HE H L+ G E + +A+K +MSKAYDR+EW+F++ +
Sbjct: 361 ENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQ 420
Query: 1024 AYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHM 1083
GF W+S ++ + VSY + +NG P+RGLRQGDPLSP+LF++ +VLS +
Sbjct: 421 EMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGL 480
Query: 1084 ILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRI 1143
+A+ G + G+++S P + HL FADD++ F ++ + F+ +L + AS Q I
Sbjct: 481 CRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMI 540
Query: 1144 NTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKE 1203
N SKS+++ S+ P +KT+ I I G YLGLP ++GR K I +R+++
Sbjct: 541 NKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQ 600
Query: 1204 KIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSR 1263
+ W L+ AGK ++KSV+ S+PTY M+ CK + S + FWW ++ +
Sbjct: 601 RSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADKK 660
Query: 1264 GIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPDSS 1323
+ W + +KKEGG+GF++ N A + K +WRI +P ++ +++ Y SS
Sbjct: 661 KMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRTSS 720
Query: 1324 FLDATPKPGDSWMWR 1338
FLD + S WR
Sbjct: 721 FLDCSVTAASSHGWR 735
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 455 bits (1171), Expect = e-128
Identities = 285/888 (32%), Positives = 448/888 (50%), Gaps = 48/888 (5%)
Query: 440 ARELKEIN--SKQKPSILFLMETRARRNKIERLKFALHFSNFFCVDPIGTAGGLALFWNK 497
A EL+ I S +L + ET A ++ R+ L F N F VD +G +GGL L W
Sbjct: 580 ALELRSITLGSVYITDVLAIFETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWRT 639
Query: 498 EC-TVEILDSNQNYIHVM-ITEKEKVIGAEYTFIYGEPLRQRRQALWDSISRLKPLAQGP 555
V ++DS +IH + K+ V +Y P RR LWD + + GP
Sbjct: 640 GIGEVSVVDSTDQFIHAKDVNGKDNV---NLVVVYAAPTASRRSGLWDRLGDVIRSMDGP 696
Query: 556 WCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVDSNALANIDIKGCKYTWLSNPREGFV 615
GDFN + E+ G + + F +++ ++L ++ KG K+TW E F
Sbjct: 697 VVIGGDFNTIVRLDERSGGNGRLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFF 756
Query: 616 TREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPK---HRSGRQFKYEAFWN 672
++LDRVL R + A V+ LP ++SDH+PL + P+ +R R F++EA W
Sbjct: 757 VAKRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWL 816
Query: 673 EHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVTFSRADKEIEKLKARLS 732
H +++ +WN D T E K++ L
Sbjct: 817 SHPGFKELLLTSWN------KDIST------------------------PEALKVQELLD 846
Query: 733 SMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRR 792
++D K + + F + Q EE+ W +SR +W GDRNT FFH +TI RR
Sbjct: 847 LHQSDDLLKKEEELLKDFDVVLEQ----EEVVWMQKSREKWFVHGDRNTKFFHTSTIIRR 902
Query: 793 GRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQVTQIQECL--SCVPKLIPTDLN 850
RN+I L+D G W+ + + + D+++ ++ + + + E L L D +
Sbjct: 903 RRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFTALSEADFS 962
Query: 851 NKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLS 910
+ L + + E++ SM KAPGPDG +F++ W VVG V V FF++ +
Sbjct: 963 S-LTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSFP 1021
Query: 911 PCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFI 970
N+ LV L+ K+ E Q+RPIS CN L+K I+KV+V RLKG +N +I P Q++FI
Sbjct: 1022 QETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSFI 1081
Query: 971 KDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGP 1030
RL DNI++ E+ H+++ R + K + +KLD+ KAYDR+ W+ LE L A G G
Sbjct: 1082 PGRLSTDNIVVVQEVVHSMR-RKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGT 1140
Query: 1031 WVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQ 1090
WV +M V G S + NG + + P RGLRQGDPLSPYLFVL ++ L H+I +
Sbjct: 1141 WVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAA 1200
Query: 1091 GHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSM 1150
+ IK+S S P ++H+ FADD ++FA+A+ + +L F AS Q+++ KS +
Sbjct: 1201 KKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKI 1260
Query: 1151 STSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKE 1210
SK++ L +++ + ++ G YLG+P + R + +R ++AGWK
Sbjct: 1261 YFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKG 1320
Query: 1211 VLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKKSRGIHLKDW 1270
+L+ AG+ L K+V+ SI + M+ P+ LD + F W + + + HL W
Sbjct: 1321 RMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAW 1380
Query: 1271 HSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALY 1318
+ ++EGG+G R N A + K WR+ N +L AQV+++ Y
Sbjct: 1381 TRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKY 1428
>At3g45550 putative protein
Length = 851
Score = 421 bits (1081), Expect = e-117
Identities = 209/496 (42%), Positives = 298/496 (59%)
Query: 842 PKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVH 901
P + +N++L + D EI + KAPGPDGL F+K W++VG +V V
Sbjct: 34 PSSVTNIINSELTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVK 93
Query: 902 SFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISKVIVARLKGELNDI 961
FF +S + +N T + ++PKI + + + YRPI+ CN LYK+ISK +V RLK LN I
Sbjct: 94 LFFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSI 153
Query: 962 ITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSKAYDRVEWEFLEKA 1021
++ +Q+AFI R+I DN++IAHEI H+L+ R R K ++A+K D+SKAYDRVEW+FLE
Sbjct: 154 VSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETT 213
Query: 1022 LLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLS 1081
+ +GFC W+ +M V+ V Y +NG P RG+RQGDPLSPYLF+L D+LS
Sbjct: 214 MRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILS 273
Query: 1082 HMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQ 1141
H+I + G I+G+++ P ITHL FADDSL F +A + + + + S Q
Sbjct: 274 HLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQ 333
Query: 1142 RINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERM 1201
+IN KS ++ + +T++ + IP G YLGLP +GR K +I +R+
Sbjct: 334 KINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRV 393
Query: 1202 KEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELDSLVARFWWSNNKK 1261
KE+ A W L+ AGKE+L+KSV ++P YAM+ P+G E++SL+ FWW
Sbjct: 394 KERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASN 453
Query: 1262 SRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHTLVAQVMKALYFPD 1321
RGI W L SKKEGG+GFR+ N A + KQAWRI P++L A+VMKA YF D
Sbjct: 454 KRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKD 513
Query: 1322 SSFLDATPKPGDSWMW 1337
+S +DA + S+ W
Sbjct: 514 NSIIDAKTRSQQSYGW 529
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 418 bits (1075), Expect = e-116
Identities = 228/639 (35%), Positives = 347/639 (53%), Gaps = 2/639 (0%)
Query: 701 KVKSCQIGLTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQ 760
++ C+ +++W++ A I KL+ L + W +++ + + +R+
Sbjct: 3 RLVECRKAISQWKRENDFNAKSRITKLRRELDKEKSATFPS--WTQISLLQDVLGDAYRE 60
Query: 761 EELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITD 820
EE FW +SR +W GD+N+ FF AT R N + L D G+ +
Sbjct: 61 EEDFWRLKSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVT 120
Query: 821 HFQLIFKSEQVTQIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGL 880
F+ +F S + + L K + D+N L + V ++EI S+++ APGPDG
Sbjct: 121 FFEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGF 180
Query: 881 NGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCN 940
LFF+ W +V ++ S + FF T L N T + L+PKI RPIS C+
Sbjct: 181 TALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCS 240
Query: 941 YLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHL 1000
+YKIISK++ ARLK L I++P QSAF+ +RL+ DNI++AHEI H L+ + KD +
Sbjct: 241 VMYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFM 300
Query: 1001 AIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQR 1060
K DMSKAYDRVEW FL+ LLA GF W++ +M V VSY +NG P R
Sbjct: 301 VFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHR 360
Query: 1061 GLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKA 1120
GLRQGDPLSP+LFVL + L H++ QA+ G I GI+ + + P + HL FADD+L+ KA
Sbjct: 361 GLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKA 420
Query: 1121 TQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYL 1180
+Q E + L+ + S Q IN+ KS+++ + K + N I T G YL
Sbjct: 421 SQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYL 480
Query: 1181 GLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFP 1240
GLP + SK +IKE+++ +++GW L+Q GK++L+KS+ + P YAM
Sbjct: 481 GLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLS 540
Query: 1241 KGFCKELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAW 1300
K C +L S++ FWW++ + + IH L K GG GF++ N A + KQA
Sbjct: 541 KTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQAS 600
Query: 1301 RIHNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWRA 1339
R+H +L++Q++K+ Y+ +S FL AT S+ W++
Sbjct: 601 RLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQS 639
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 392 bits (1007), Expect = e-108
Identities = 246/815 (30%), Positives = 394/815 (48%), Gaps = 55/815 (6%)
Query: 529 IYGEPLRQRRQALWDSISRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSF 588
+Y P RR LW + + +GP GDFN L+ E+ G + + F +
Sbjct: 6 VYAAPSVSRRSGLWGELKDVVNGLEGPLLIGGDFNTILWVDERMGGNGRLSPDSLAFGDW 65
Query: 589 VDSNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDH 648
++ +L ++ KG K+TW +E V ++LDRV R + A+V LP ++SDH
Sbjct: 66 INELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLPFMASDH 125
Query: 649 SPLILDPVPKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIG 708
+PL + P Q
Sbjct: 126 APLYVQLEPLQ----------------------------------------------QRK 139
Query: 709 LTKWQKVTFSRADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQL---WRQEELFW 765
L KW + F EKL A + + + + + +A+ + ++++ QEE W
Sbjct: 140 LRKWNREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLW 199
Query: 766 STRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLI 825
+SR ++ + GDRNT FFH +TI RR RNRI LK W+ + + +++ +
Sbjct: 200 FQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRL 259
Query: 826 FKSEQVTQIQECLSCVPKLIPTDLNNK-LMETVTDEEIKVVAHSMDSLKAPGPDGLNGLF 884
+ E V++++ L ++ L++ T E+ SM KAPGPDG +F
Sbjct: 260 YSLEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVF 319
Query: 885 FKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYK 944
++ W VGP V V FF T L N+ L+ L+ K+ E Q+RP+S CN L+K
Sbjct: 320 YQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFK 379
Query: 945 IISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKL 1004
II+K++V RLK ++ +I P Q++FI RL DNI++ E H+++ R + K + +KL
Sbjct: 380 IITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMR-RKKGRKGWMLLKL 438
Query: 1005 DMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQ 1064
D+ KAYDRV W+FL++ L A G W S +M V S NG + ++P RGLRQ
Sbjct: 439 DLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQ 498
Query: 1065 GDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQE 1124
GDPLSPYLFVL ++ L H+I + + + I +S ++H+ FADD ++FA+A+ +
Sbjct: 499 GDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQ 558
Query: 1125 AYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPA 1184
++L F AS Q+++ KS + S ++ ++ ++ I +E G YLG+P
Sbjct: 559 IRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPI 618
Query: 1185 VWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFC 1244
+ R + ER+ ++AGWK L+ AG+ L K+V+ SIP + M+ P
Sbjct: 619 LQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTL 678
Query: 1245 KELDSLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHN 1304
LD F W + + + HL W + K EGG+G R N A + K WR+
Sbjct: 679 DTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQ 738
Query: 1305 TPHTLVAQVMKALY----FPDSSFLDATPKPGDSW 1335
+L A+V++ Y D+S+L P+ +W
Sbjct: 739 DKESLWARVVRKKYKVGGVQDTSWLKPQPRWSSTW 773
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 377 bits (968), Expect = e-104
Identities = 249/786 (31%), Positives = 382/786 (47%), Gaps = 68/786 (8%)
Query: 600 KGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSPLILDPVPKH 659
KG ++TW E ++LDRVL R + AL+ V + P
Sbjct: 4 KGNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEALLCPAQNVDARRRP--------- 54
Query: 660 RSGRQFKYEAFWNEHKDCSKVVEDAWNT---TPQGEND--WETLQNKVKSCQIGLTKWQK 714
F++EA W H+ +++ +W+T TP N W+ L KW K
Sbjct: 55 -----FRFEAAWLSHEGFKELLTASWDTGLSTPVALNRLRWQ------------LKKWNK 97
Query: 715 VTFS----RADKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQIRQLWRQEELFWSTRSR 770
F R +K + LKA + + E K + L QEE W +SR
Sbjct: 98 EVFGNIHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLK-EFDVLLHQEETLWFQKSR 156
Query: 771 LQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQ 830
+ GDRNT FFH +T+ RR RNRI LKD W+ +E + + D+++ ++ E
Sbjct: 157 EKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLED 216
Query: 831 VTQIQECLSC--VPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGLFFKTH 888
V+ ++ L P+L + NN L T +E+ V SM KAPGPDG +F++
Sbjct: 217 VSVVRGTLPTEGFPRLTREEKNN-LNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQC 275
Query: 889 WNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLYKIISK 948
W VG V V FF + L N+ L+ L+ K+ E Q+RP+S CN L+KII+K
Sbjct: 276 WETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITK 335
Query: 949 VIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIKLDMSK 1008
++V RLK ++ +I P Q++FI RL DNI++ E H+++ R + K + +KLD+ K
Sbjct: 336 MMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMR-RKKGRKGWMLLKLDLEK 394
Query: 1009 AYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLRQGDPL 1068
AYDR+ W+FL + L A G W+ +M V G NG + + P+RGLRQGDP+
Sbjct: 395 AYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPI 454
Query: 1069 SPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQEAYHF 1128
SPYLFVL ++ L H I A +G + I +S P ++H+ FADD ++FA+A
Sbjct: 455 SPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEA-------- 506
Query: 1129 VQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLPAVWGR 1188
+ +Q+++ KS + S ++ L+ +T I + E G YLG+P + R
Sbjct: 507 ---------SVAQKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKR 557
Query: 1189 SKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGFCKELD 1248
+ ER+ +++GWK L+ AG+ L K+V+ SIP + M+ P ++LD
Sbjct: 558 INKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLD 617
Query: 1249 SLVARFWWSNNKKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRIHNTPHT 1308
+ F W + + R HL W + K GG+G R N A + K WR+ N +
Sbjct: 618 KVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVS 677
Query: 1309 LVAQVMKALY----FPDSSFLDATPKPGDSWMWRANQRQELLDRQRNLGCRGWSYHKLMG 1364
L A+V++ Y DSS+L PK S WR+ + R +GW H+ +
Sbjct: 678 LWARVLRRKYKVTDVHDSSWL--VPKATWSSTWRS-----IGVGLREGVAKGWILHEPLC 730
Query: 1365 GQMACL 1370
+ CL
Sbjct: 731 TRATCL 736
>At1g25430 hypothetical protein
Length = 1213
Score = 333 bits (855), Expect = 4e-91
Identities = 251/936 (26%), Positives = 423/936 (44%), Gaps = 40/936 (4%)
Query: 426 LISWNCRGVGASTTARELKEINSKQKPSILFLMETRARRNKIERLKFALHFSNFFCVD-P 484
L WN RG + K+ KP ++ET ++ K + AL F +
Sbjct: 5 LFCWNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYA 64
Query: 485 IGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRRQALWDS 544
G + + W+ V ++ + I + + +Y R+ LW
Sbjct: 65 FSDLGKIWVMWDPSVQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIE 124
Query: 545 ISRLKP---LAQGPWCCLGDFNETLYQHEKDGLHPQSQQ---SLNRFRSFVDSNALANID 598
I + + PW LGDFN+ L E +P S ++ FR + + L+++
Sbjct: 125 IVNMVVSGIIGDRPWLVLGDFNQVLNPQEHS--NPVSLNVDINMRDFRDCLLAAELSDLR 182
Query: 599 IKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHSP--LILDPV 656
KG +TW + V + K+DR+L N SW +L+P +L + + SDH ++L+
Sbjct: 183 YKGNTFTWWNKSHTTPVAK-KIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEET 241
Query: 657 PKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSCQIGLTKWQKVT 716
++ R FK+ + ++ D +V D W T + + K+K+ + + + ++
Sbjct: 242 -SIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLN 300
Query: 717 FSRADKEIEKLKARLSSMHNEDHHKIDWNEM-AQFKAQIRQLWR----QEELFWSTRSRL 771
+S +K ++ L +D D + A F+ + + W EE F+ +SR+
Sbjct: 301 YSELEKRTKEAHDFLIGC--QDRTLADPTPINASFELEAERKWHILTAAEESFFRQKSRI 358
Query: 772 QWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEGVMENITDHFQLIFKSEQV 831
W GD NT +FH R N I L DG G ++ QEG+++ +F + E
Sbjct: 359 SWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVD 418
Query: 832 TQIQE--------CLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSMDSLKAPGPDGLNGL 883
+ E C P + +L T ++E+I+ S+ K+ GPDG
Sbjct: 419 PYLMEQNDMNLLLSYRCSPAQVC-----ELESTFSNEDIRAALFSLPRNKSCGPDGFTAE 473
Query: 884 FFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEMANQYRPISCCNYLY 943
FF W++VG EV + FF++ L N T + L+PKI + + +RPISC N LY
Sbjct: 474 FFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLY 533
Query: 944 KIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHALQHRGREHKDHLAIK 1003
K+I++++ RL+ L+ +I+ QSAF+ R + +N+L+A ++ H + L K
Sbjct: 534 KVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGML--K 591
Query: 1004 LDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVNGYLSRKYIPQRGLR 1063
+D+ KA+D V WEF+ AL A +++ + + ++ +NG + +GLR
Sbjct: 592 VDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLR 651
Query: 1064 QGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGIKLSPSTPCITHLFFADDSLVFAKATQQ 1123
QGDPLSPYLFVL M+ S+++ G I S I+HL FADD ++F
Sbjct: 652 QGDPLSPYLFVLAMEAFSNLLHSRYESGLIH-YHPKASNLSISHLMFADDVMIFFDGGSF 710
Query: 1124 EAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTNIFQIPTWEEPGHYLGLP 1183
+ + L+ F+S S ++N KS + + L++ + P P YLGLP
Sbjct: 711 SLHGICETLDDFASWSGLKVNKDKSHLYLAG--LNQLESNANAAYGFPIGTLPIRYLGLP 768
Query: 1184 AVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVIQSIPTYAMAVTPFPKGF 1243
+ + + + E++ + W L+ AG+ LI SVI + M+ PKG
Sbjct: 769 LMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGC 828
Query: 1244 CKELDSLVARFWWSNN-KKSRGIHLKDWHSLTCSKKEGGMGFREFHLQNLAHMTKQAWRI 1302
K ++SL +RF WS N ++++GI + W +L K EGG+G R N + WR+
Sbjct: 829 IKRIESLCSRFLWSGNIEQAKGIKV-SWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRL 887
Query: 1303 HNTPHTLVAQVMKALYFPDSSFLDATPKPGDSWMWR 1338
+L A + SF DSW W+
Sbjct: 888 FVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWK 923
>At1g10160 putative reverse transcriptase
Length = 1118
Score = 313 bits (803), Expect = 4e-85
Identities = 240/874 (27%), Positives = 398/874 (45%), Gaps = 71/874 (8%)
Query: 424 MRLISWNCRGVGASTTARELKEINSKQKPSILFLMETR-ARRNKIERLKFALHF----SN 478
M++ WN RG+ + R ++ + + +ET A+ N L L SN
Sbjct: 1 MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSN 60
Query: 479 FFCVDPIGTAGGLALFWNKECTVEILDSNQNYIHVMITEKEKVIGAEYTFIYGEPLRQRR 538
+ C + G + + W+ +V + + I + F+YG R
Sbjct: 61 YCCSE----LGRIWIVWDPSISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDR 116
Query: 539 QALWDSI---SRLKPLAQGPWCCLGDFNETLYQHEKDGLHPQSQQSLNRFRSFVD----- 590
++LW+ I SR PL+ PW LGDFN+ E H QSL R D
Sbjct: 117 RSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASE----HYSINQSLLNLRGMEDLQCCL 172
Query: 591 -SNALANIDIKGCKYTWLSNPREGFVTREKLDRVLSNWSWRSLYPHALVVALPVVSSDHS 649
+ L+++ +G +TW ++ ++ + R KLDR L+N W +++P AL V P SDH+
Sbjct: 173 RDSQLSDLPSRGVFFTWSNHQQDNPILR-KLDRALANGEWFAVFPSALAVFDPPGDSDHA 231
Query: 650 PLIL----DPVPKHRSGRQFKYEAFWNEHKDCSKVVEDAWNTTPQGENDWETLQNKVKSC 705
P I+ P P +S FKY +F + H + AW + +L+ +K
Sbjct: 232 PCIILIDNQPPPSKKS---FKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVA 288
Query: 706 QIGLTKWQKVTFSRA------------DKEIEKLKARLSSMHNEDHHKIDWNEMAQFKAQ 753
++ ++ FS D ++E L + ++ +H + + F A
Sbjct: 289 KLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREH--VARKQWIFFAAA 346
Query: 754 IRQLWRQEELFWSTRSRLQWAQWGDRNTHFFHATTIQRRGRNRIHRLKDGTGSWIEGQEG 813
+ +RQ +SR++W GD NT FFH I + N I L+ G +E +
Sbjct: 347 LESFFRQ-------KSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQ 399
Query: 814 VMENITDHFQ--LIFKSEQVT--QIQECLSCVPKLIPTDLNNKLMETVTDEEIKVVAHSM 869
+ + ++ L SE VT +++ +P + L ++L ++EEI V SM
Sbjct: 400 IKGMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSM 459
Query: 870 DSLKAPGPDGLNGLFFKTHWNVVGPEVCSVVHSFFNTSTLSPCINETLVALVPKIPSLEM 929
KAPGPDG FF W +V V + + FF + L N T + L+PK+ +
Sbjct: 460 PRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADR 519
Query: 930 ANQYRPISCCNYLYKIISKVIVARLKGELNDIITPNQSAFIKDRLIQDNILIAHEIFHAL 989
Q+RP++CC +YK+I+++I RLK ++ + NQ FIK RL+ +N+L+A E+
Sbjct: 520 LTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNF 579
Query: 990 QHRGREHKDHLAIKLDMSKAYDRVEWEFLEKALLAYGFCGPWVSLVMNLVRGVSYKYKVN 1049
+ G + +++D+SKAYD V WEFL L A ++ + + SY N
Sbjct: 580 EADGETTRG--CLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFN 637
Query: 1050 GYLSRKYIPQRGLRQGDPLSPYLFVLVMDVLSHMILQAKNQGHIQGI-KLSPS--TPCIT 1106
G L + ++G+RQGDP+S +LFVLVMDVLS ++ + G + G+ L P+ P IT
Sbjct: 638 GELIGFFQGKKGIRQGDPMSSHLFVLVMDVLS----KSLDLGALNGLFNLHPNCLAPIIT 693
Query: 1107 HLFFADDSLVFAKATQQEAYHFVQLLNTFSSASSQRINTSKSSMSTSKHIPTLLKTQMTN 1166
HL FADD LVF+ + +L+ F S IN K+ + ++ N
Sbjct: 694 HLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADN 753
Query: 1167 IFQIPTWEEPGHYLGLPAVWGRSKTRALAWIKERMKEKIAGWKEVLLNQAGKEVLIKSVI 1226
+ I P YLG+P + + + + + +R+ + W L+ AG+ L+ +
Sbjct: 754 L-GITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLNWIW 812
Query: 1227 QSIPTYAMAVTPFPKGF--CKELDSLVARFWWSN 1258
+ + + PF + F C+ + A FW N
Sbjct: 813 RKL----CKLRPFARPFIICEVGSGVTASFWHDN 842
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.331 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,307,965
Number of Sequences: 26719
Number of extensions: 1917916
Number of successful extensions: 5433
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5035
Number of HSP's gapped (non-prelim): 148
length of query: 1797
length of database: 11,318,596
effective HSP length: 114
effective length of query: 1683
effective length of database: 8,272,630
effective search space: 13922836290
effective search space used: 13922836290
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0304.11