BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0302a.10
(243 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32950 TNP1-like protein 47 9e-06
At2g14970 En/Spm-like transposon protein 40 0.001
At2g10000 putative TNP1-like transposon protein 39 0.002
At4g04430 putative transposon protein 39 0.002
At2g34130 En/Spm-like transposon protein 39 0.003
At2g13160 F15O11.16 39 0.003
At1g42410 hypothetical protein 39 0.003
At2g12390 putative TNP1-like transposon protein 36 0.016
At3g30780 hypothetical protein 35 0.036
At1g42500 hypothetical protein 35 0.047
At1g36260 unknown protein 34 0.080
At1g17770 putative protein 34 0.080
At2g14230 hypothetical protein 33 0.18
At1g52850 hypothetical protein 33 0.18
At2g13870 En/Spm-like transposon protein 32 0.31
At1g33130 hypothetical protein 32 0.40
At3g30200 hypothetical protein 31 0.52
At4g03310 hypothetical protein 30 0.89
At3g32240 hypothetical protein 30 0.89
At1g42150 hypothetical protein 30 0.89
>At3g32950 TNP1-like protein
Length = 787
Score = 47.0 bits (110), Expect = 9e-06
Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 38 VGPGAPDFVTEISVLVKKKAPFNVKGWKKVPDTAKDHILSQVFVNIII*FIFLFSFVLIQ 97
+G G+ + LV++ P + W K+ + + + +
Sbjct: 109 IGKGSVKLASYAGALVREHVPITIDHWTKIGEEIRTLLWKSI------------------ 150
Query: 98 YLQYISCNCWVQDTFDIDQTEHNKEVILNTAKRLYGSHRGKLHEHFKKYETNEMALEHKP 157
Q F++D+ E+ K +L L+ S + + F++ +TN+ + +P
Sbjct: 151 -----------QARFELDE-EYQKVAVLKQMGCLWRSWKSRQVTKFREAKTNQQGMNLRP 198
Query: 158 DEISEEDWEHLVDKFSSPTYKEMSARNKANKSKQVINHRCGRKSFQAVSYD-----ARDP 212
+S +W V +SP +K +S K + Q + H C R+ ++ D A
Sbjct: 199 KNVSPFEWRKFVKSKTSPEFKVISDSYKERRRNQ-LPHTCSRRGMVRLAEDMVILCAYPT 257
Query: 213 ETQKEPNYQDLWRMTHTNNNGEWVNEASRE 242
E + +W + T +G VN + E
Sbjct: 258 EVMR----LKVWVKSRTKKDGTPVNTNAAE 283
>At2g14970 En/Spm-like transposon protein
Length = 771
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/145 (17%), Positives = 57/145 (38%), Gaps = 30/145 (20%)
Query: 38 VGPGAPDFVTEISVLVKKKAPFNVKGWKKVPDTAKDHILSQVFVNIII*FIFLFSFVLIQ 97
+G G+ + LV++ P + W K+ + + + V
Sbjct: 212 IGKGSVKLASYAGALVREHVPITINRWTKIGEEIRTLLWKSV------------------ 253
Query: 98 YLQYISCNCWVQDTFDIDQTEHNKEVILNTAKRLYGSHRGKLHEHFKKYETNEMALEHKP 157
Q F++D+ E+ K +L L+ S + + F++ +TN+ + +P
Sbjct: 254 -----------QAKFELDE-EYQKVAVLKQMGCLWRSWKSRQVTKFREAKTNQQRMNLRP 301
Query: 158 DEISEEDWEHLVDKFSSPTYKEMSA 182
+S +W V +SP +K++ +
Sbjct: 302 KNVSPFEWRKFVKSKTSPEFKKIGS 326
>At2g10000 putative TNP1-like transposon protein
Length = 531
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/154 (16%), Positives = 63/154 (40%), Gaps = 30/154 (19%)
Query: 37 AVGPGAPDFVTEISVLVKKKAPFNVKGWKKVPDTAKDHILSQVFVNIII*FIFLFSFVLI 96
A+GPG+ + + L+++ P N+ WKKV K +
Sbjct: 22 AIGPGSVKLSSYVGTLMREHVPINIVNWKKVTRDLKTVLWKS------------------ 63
Query: 97 QYLQYISCNCWVQDTFDIDQTEHNKEVILNTAKRLYGSHRGKLHEHFKKYETNEMALEHK 156
+Q F++D+ + + ++N L+ +H+ + + N+ + +
Sbjct: 64 -----------IQARFELDE-DWQRISVINQMGNLWRAHKSRRVKAINLAANNQERMNLR 111
Query: 157 PDEISEEDWEHLVDKFSSPTYKEMSARNKANKSK 190
P I+ +W+ V +S +K++ + + ++ ++
Sbjct: 112 PTNINPVEWQKFVKLKTSSAFKKLESGDPSSVTR 145
>At4g04430 putative transposon protein
Length = 350
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 154 EHKPDEISEEDWEHLVDKFSSPTYKEMS-----ARNKANKSKQVINHRCGRKSFQAVSYD 208
E KP I + W+ LV + P ++ S AR K + HR G+ S++A +
Sbjct: 129 EAKPKWIDPDVWKGLVQFWQDPKSEKKSNNSRNARYHDLDGKDIYKHRSGQTSYKARARK 188
Query: 209 ARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
+ + P++ +L TH +G +++ S+E+
Sbjct: 189 RCEKTGETTPDFLELLDETHRKADGTFIDGKSKEI 223
>At2g34130 En/Spm-like transposon protein
Length = 459
Score = 38.5 bits (88), Expect = 0.003
Identities = 26/115 (22%), Positives = 53/115 (45%), Gaps = 7/115 (6%)
Query: 136 RGKLHEHFKKYETN--EMALEHKPDEISEEDWEHLVDKFSSPTYKEMS-----ARNKANK 188
+ ++ + +++ N E E KP I + W+ LV + P ++ S AR
Sbjct: 160 KSRMSDQVSRWKGNWKEKGDEAKPKWIDPDVWKGLVQFWQDPKSEKKSNNSRNARYHDPD 219
Query: 189 SKQVINHRCGRKSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
K + HR G+ S++A + + + P++ +L TH +G +++ S E+
Sbjct: 220 GKGIYKHRSGQTSYKARARKRCEKTGETTPDFLELLDETHRKADGTFIDGKSEEI 274
>At2g13160 F15O11.16
Length = 437
Score = 38.5 bits (88), Expect = 0.003
Identities = 26/115 (22%), Positives = 53/115 (45%), Gaps = 7/115 (6%)
Query: 136 RGKLHEHFKKYETN--EMALEHKPDEISEEDWEHLVDKFSSPTYKEMS-----ARNKANK 188
+ ++ + +++ N E E KP I + W+ LV + P ++ S AR
Sbjct: 158 KSRMSDQVSRWKGNWKEKGDEAKPKWIDPDVWKGLVQFWQDPKSEKKSNNSRNARYHDPD 217
Query: 189 SKQVINHRCGRKSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
K + HR G+ S++A + + + P++ +L TH +G +++ S E+
Sbjct: 218 GKGIYKHRSGQTSYKARARKRCEKTGETTPDFLELLDETHRKADGTFIDGKSEEI 272
>At1g42410 hypothetical protein
Length = 431
Score = 38.5 bits (88), Expect = 0.003
Identities = 26/115 (22%), Positives = 53/115 (45%), Gaps = 7/115 (6%)
Query: 136 RGKLHEHFKKYETN--EMALEHKPDEISEEDWEHLVDKFSSPTYKEMS-----ARNKANK 188
+ ++ + +++ N E E KP I + W+ LV + P ++ S AR
Sbjct: 158 KSRMSDQVSRWKGNWKEKGDEAKPKWIDPDVWKGLVQFWQDPKSEKKSNNSRNARYHDPD 217
Query: 189 SKQVINHRCGRKSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
K + HR G+ S++A + + + P++ +L TH +G +++ S E+
Sbjct: 218 GKGIYKHRSGQTSYKARARKRCEKTGETTPDFLELLDETHRKADGTFIDGKSEEI 272
>At2g12390 putative TNP1-like transposon protein
Length = 984
Score = 36.2 bits (82), Expect = 0.016
Identities = 19/83 (22%), Positives = 44/83 (52%), Gaps = 1/83 (1%)
Query: 108 VQDTFDIDQTEHNKEVILNTAKRLYGSHRGKLHEHFKKYETNEMALEHKPDEISEEDWEH 167
VQ F++D+ E+ K ++L L+ S + + + ++ +TN+ + +P IS DW
Sbjct: 486 VQARFELDE-EYQKVIVLRQIGCLWRSWKSRQVTNIREAKTNQERMNMRPKNISPFDWRK 544
Query: 168 LVDKFSSPTYKEMSARNKANKSK 190
V +S +K+ ++ + + ++
Sbjct: 545 FVKLKTSQEFKKTASADPSEVTR 567
>At3g30780 hypothetical protein
Length = 438
Score = 35.0 bits (79), Expect = 0.036
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 145 KYETNEMALEHKPDEISEEDWEHLVDKFSSPTY--KEMSARNKANKSKQ---VINHRCGR 199
K + E E KP I E W+ LV + P K +++RN + + HR G+
Sbjct: 183 KGKWKEKGNEAKPRWIDPEVWKGLVSFWMDPKSERKSLNSRNVRYHDPEGLGIHKHRSGQ 242
Query: 200 KSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
S++A + + + P++ L TH +G +++ S E+
Sbjct: 243 TSYKARARKRCEMTGESTPDFLLLLDETHRKPDGSFIDRKSEEI 286
>At1g42500 hypothetical protein
Length = 451
Score = 34.7 bits (78), Expect = 0.047
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 145 KYETNEMALEHKPDEISEEDWEHLVDKFSSPTY--KEMSARNKANKSKQ---VINHRCGR 199
K + E E KP I E W+ LV + P K +++RN + HR G+
Sbjct: 183 KGKWKEKGDEAKPRWIDPEVWKGLVSFWRDPKSERKSLNSRNARYHDPDGLGIHKHRSGQ 242
Query: 200 KSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
S++A + + + P++ L TH +G +++ S E+
Sbjct: 243 TSYKARTRKRCEMTGESTPDFLLLLDKTHRKPDGSFIDRKSEEI 286
>At1g36260 unknown protein
Length = 409
Score = 33.9 bits (76), Expect = 0.080
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 145 KYETNEMALEHKPDEISEEDWEHLVDKFSSPTY--KEMSARNKANKSKQ---VINHRCGR 199
K + E E KP I E W+ +V + P K +++RN + HR G+
Sbjct: 141 KGKWKEKGDEAKPRWIDPEVWKGMVSFWRDPKSERKSINSRNARYHDPDGLGIHKHRSGQ 200
Query: 200 KSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
S++A + + + P++ L TH +G +++ S+E+
Sbjct: 201 TSYKARARKRCEMTGESTPDFLLLLDETHRKPDGSFIDRKSKEI 244
>At1g17770 putative protein
Length = 693
Score = 33.9 bits (76), Expect = 0.080
Identities = 17/57 (29%), Positives = 31/57 (53%), Gaps = 2/57 (3%)
Query: 155 HKPDEISEEDWEHLVDKFSSPTYKEMSARNKANKSKQVINHRCGRKSF-QAVSYDAR 210
++P+ + E+ WE + + + PT +SA+ K N + +NH C F Q + Y+ R
Sbjct: 579 YEPELLLEDSWEQVSEFINLPTQVLISAKEKGNVGR-FMNHSCSPNVFWQPIEYENR 634
>At2g14230 hypothetical protein
Length = 365
Score = 32.7 bits (73), Expect = 0.18
Identities = 17/63 (26%), Positives = 31/63 (48%)
Query: 181 SARNKANKSKQVINHRCGRKSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEAS 240
+AR K + H G+ S++A + +K P++ +L TH +G ++NE S
Sbjct: 139 NARYHDPDGKGIYKHCSGQTSYKARVRKRCEKTGEKTPDFLELLDETHRKADGSFINEKS 198
Query: 241 REV 243
E+
Sbjct: 199 EEI 201
>At1g52850 hypothetical protein
Length = 447
Score = 32.7 bits (73), Expect = 0.18
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 145 KYETNEMALEHKPDEISEEDWEHLVDKFSSPT--YKEMSARNKANKSKQ---VINHRCGR 199
K + E E KP I + W LV + P K +++RN + HR G+
Sbjct: 182 KGKWREKGDEAKPKWIDPDVWAGLVKFWKDPKSELKSINSRNTRYHDPDGLGIHKHRSGQ 241
Query: 200 KSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
S++A + + + P++ L TH ++G +++ S EV
Sbjct: 242 TSYKARARKRCEMTGETCPDFLVLLDETHRKSDGTFIDRKSEEV 285
>At2g13870 En/Spm-like transposon protein
Length = 441
Score = 32.0 bits (71), Expect = 0.31
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 145 KYETNEMALEHKPDEISEEDWEHLVDKFSSPT--YKEMSARNKANKSKQ---VINHRCGR 199
K + E E KP I + W LV + P K +++RN + HR G
Sbjct: 182 KGKWREKGDEAKPKCIDPDVWAGLVKFWKDPKSELKSINSRNARYHEPDGLGIHKHRSGH 241
Query: 200 KSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
S++A + + + P++ L TH ++G +++ S EV
Sbjct: 242 TSYKARARKRCEMTGETCPDFLVLLDETHRKSDGTFIDRKSEEV 285
>At1g33130 hypothetical protein
Length = 356
Score = 31.6 bits (70), Expect = 0.40
Identities = 14/54 (25%), Positives = 29/54 (52%)
Query: 190 KQVINHRCGRKSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
K + HR G+ S++A + + +K P++ +L TH +G +++ S E+
Sbjct: 187 KGIYKHRSGQTSYKARARKRCEKTGEKTPDFLELLDETHRKADGSFIDGKSEEI 240
>At3g30200 hypothetical protein
Length = 409
Score = 31.2 bits (69), Expect = 0.52
Identities = 17/71 (23%), Positives = 31/71 (42%), Gaps = 3/71 (4%)
Query: 101 YISCNCW--VQDTFDIDQTEHNKEVILNTAKRLYGSHRGKLHEHFKKYETNEMALEHKPD 158
+I W +Q F D K+ ++ + + K+ NE LE++P+
Sbjct: 195 HIKDRAWAVIQSKFRFDDPMMRKDYVMGALGSRCKDVKLRFWREHKRNNLNE-TLENRPE 253
Query: 159 EISEEDWEHLV 169
++ E+ W HLV
Sbjct: 254 KVPEDQWSHLV 264
>At4g03310 hypothetical protein
Length = 562
Score = 30.4 bits (67), Expect = 0.89
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 145 KYETNEMALEHKPDEISEEDWEHLVDKFSSPT--YKEMSARNKANKSKQ---VINHRCGR 199
K + E E KP I + W LV + P + +++RN + HR G+
Sbjct: 177 KGKWKEKGDEAKPKWIDPQVWAGLVRFWRDPASEIRSINSRNARYPDPDDLGISKHRSGQ 236
Query: 200 KSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
SF++ + + P++ + MTH +G + + S E+
Sbjct: 237 TSFKSRARKHSEETGDLTPDFLVVLEMTHRKPDGTFSDGKSEEI 280
>At3g32240 hypothetical protein
Length = 487
Score = 30.4 bits (67), Expect = 0.89
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 145 KYETNEMALEHKPDEISEEDWEHLVDKFSSPTYKEMSARNKANKSKQ-----VINHRCGR 199
K + E+ + KP I E W LV + P + S ++ + + HR G+
Sbjct: 215 KGKWREIGDDAKPKWIDPEVWAALVKFWLDPKSEAKSINSRKARYHDPDGTGISKHRSGQ 274
Query: 200 KSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEASREV 243
SF+A + + + P++ + TH +G + + S +
Sbjct: 275 TSFKARARKHSEKTGELTPDFLQVVEETHRKPDGSFTDGKSESI 318
>At1g42150 hypothetical protein
Length = 623
Score = 30.4 bits (67), Expect = 0.89
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 123 VILNTAKRLYGSHRGKLHEHFKKYETNEMALEHKPDEISEED---WEHLVDKFSSPTYKE 179
V N+ YG K+ + + E+ E++ + ++ W LV +S +K
Sbjct: 172 VEFNSLGEPYGEGSVKMASYVRALARFEIDEEYQKTAVLKQMGCLWSKLVKLKTSKEFKV 231
Query: 180 MSARNKANKSKQVINHRCGRKSFQAVSYDARDPETQKEPNYQDLWRMTHTNNNGEWVNEA 239
+S K +SKQ+ + R + + ++ E + +W + T +G VN
Sbjct: 232 VSDSYKERRSKQISHTTSRRGMVRLAEHMKKESPNPSEVSRLQVWIKSRTRKDGTPVNTN 291
Query: 240 SRE 242
+ E
Sbjct: 292 TGE 294
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,625,732
Number of Sequences: 26719
Number of extensions: 229033
Number of successful extensions: 725
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 42
length of query: 243
length of database: 11,318,596
effective HSP length: 97
effective length of query: 146
effective length of database: 8,726,853
effective search space: 1274120538
effective search space used: 1274120538
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0302a.10