BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0299.5
(547 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31080 putative non-LTR retroelement reverse transcriptase 162 4e-40
At3g32110 non-LTR reverse transcriptase, putative 135 4e-32
At2g07730 putative non-LTR retroelement reverse transcriptase 130 2e-30
At2g45230 putative non-LTR retroelement reverse transcriptase 127 2e-29
At4g29090 putative protein 112 4e-25
At2g17910 putative non-LTR retroelement reverse transcriptase 110 2e-24
At2g01840 putative non-LTR retroelement reverse transcriptase 107 1e-23
At2g25550 putative non-LTR retroelement reverse transcriptase 104 1e-22
At3g31420 hypothetical protein 103 2e-22
At4g09710 RNA-directed DNA polymerase -like protein 101 9e-22
At2g31520 putative non-LTR retroelement reverse transcriptase 101 9e-22
At2g17610 putative non-LTR retroelement reverse transcriptase 99 6e-21
At3g09510 putative non-LTR reverse transcriptase 98 1e-20
At2g15510 putative non-LTR retroelement reverse transcriptase 96 7e-20
At2g16680 putative non-LTR retroelement reverse transcriptase 91 2e-18
At2g27870 putative non-LTR retroelement reverse transcriptase 88 1e-17
At2g05200 putative non-LTR retroelement reverse transcriptase 82 1e-15
At2g41580 putative non-LTR retroelement reverse transcriptase 80 2e-15
At1g47910 reverse transcriptase, putative 77 3e-14
At2g15540 putative non-LTR retroelement reverse transcriptase 75 9e-14
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 162 bits (410), Expect = 4e-40
Identities = 128/473 (27%), Positives = 211/473 (44%), Gaps = 35/473 (7%)
Query: 65 VVGKAVCQMIKKSDKLWVRVLEHKY----LRDTSIHKVQAHQHDSPIWKGI-LWARDMID 119
+V K ++++ + LW RV+ KY ++DTS K Q S W+ + + R+++
Sbjct: 728 LVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQPRW--SSTWRSVAVGLREVVV 785
Query: 120 QRFEFRIGKGDT-SVWYQDWSGIGIIANQIPFVHISD--------VNLTLCDLIQDNKWN 170
+ + G G T W W Q P V + + + + + WN
Sbjct: 786 KGVGWVPGDGCTIRFWLDRW------LLQEPLVELGTDMIPEGERIKVAADYWLPGSGWN 839
Query: 171 LQRLYTNLPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWIN-HLAHNPIE 229
L+ L LP +++++ L+V Q+ + D WK G ++VR AY + + P
Sbjct: 840 LEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNM 899
Query: 230 DRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLR 289
N +WKL PE++R+F W V N I N VR HL+ +A C+ C E LH LR
Sbjct: 900 GSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLR 959
Query: 290 DCSFS*DLWRRMGAI-NWRNFRYNNIISW-FSSM--ARGVHGIQFLAGVWGAWKWRCNWL 345
DC +WRR+ + F +++ W F++M +G+ F G+W AWKWRC +
Sbjct: 960 DCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDPVKGIWPTLFGMGIWWAWKWRCCDV 1019
Query: 346 LDSQRWP------IEVVWRRIAHDHDDWAWCAPSN-DLLLCHPWSPPPPDTVKCNSDGSF 398
++ I+ + + H P+ + W P VK +DG+
Sbjct: 1020 FGERKICRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGAS 1079
Query: 399 REDVQRMGGVGVIRDHQGRWVAGCYLGEAAGNAFRAEAKALLDVLELAWNRGYSRLICDV 458
R + G IR+ QG W+ G L + A AE L +AW++G+ R+ D+
Sbjct: 1080 RGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDL 1139
Query: 459 NCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRINSVHRDSNAVADHL 511
+C LV + H ++ RDW VR++ V+R++N +AD L
Sbjct: 1140 DC-KLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGL 1191
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 135 bits (341), Expect = 4e-32
Identities = 119/473 (25%), Positives = 211/473 (44%), Gaps = 31/473 (6%)
Query: 65 VVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHK---VQAHQHDSPIWKGI-LWARDMIDQ 120
++ K +++ LW +V+ KY + +H A + S W+ + + RD+I +
Sbjct: 1404 LIAKVGWRVLNDGSSLWAQVVRSKY-KVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWR 1462
Query: 121 RFEFRIGKG-DTSVWYQDW-SGIGIIANQIPFVHISDVNLTLCDLIQDNK-WNLQRLYTN 177
+ IG G W W S I + I + ++ + T DL +D W++ ++
Sbjct: 1463 EQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPF 1522
Query: 178 LPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNW-- 235
+ + + LAV D W S GR++V+ A+ + + +P +D +
Sbjct: 1523 VTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTN-DDSPRQDMSSLYGR 1581
Query: 236 VWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS* 295
VWK++ PE++R+F W V++ AI N R HL C C +E LH LRDC
Sbjct: 1582 VWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMS 1641
Query: 296 DLWRRMGAIN-WRNFRYNNIISW-FSSMARGV------HGIQFLAGVWGAWKWRCNWLLD 347
+W R+ ++F +++ W +S++ +G+ F VW WKWRC+ +
Sbjct: 1642 GIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFG 1701
Query: 348 SQRWPIEVVWRRIAHDHDDWAWCAPSNDLLLCHP---------WSPPPPDTVKCNSDGSF 398
+ + V R D A S ++ L W+PP K N+DG+
Sbjct: 1702 ENKTCRDRV--RFIKDLAVEVSIAYSREVELRLSGLRVNKPIRWTPPMEGWYKINTDGAS 1759
Query: 399 REDVQRMGGVGVIRDHQGRWVAGCYLGEAAGNAFRAEAKALLDVLELAWNRGYSRLICDV 458
R + GV+R+ G W G + +A AE + L +AW + + L +V
Sbjct: 1760 RGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHLELEV 1819
Query: 459 NCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRINSVHRDSNAVADHL 511
+ + +V L + + H ++ L++DW VRI+ V+R++N++AD L
Sbjct: 1820 DSEVVVGFL-KTGIGETHPLSFLVRLCHNFLSKDWTVRISHVYREANSLADGL 1871
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 130 bits (326), Expect = 2e-30
Identities = 95/327 (29%), Positives = 151/327 (46%), Gaps = 19/327 (5%)
Query: 199 DAWIWKDGSSGRYSVRDAYEWINHLAHN-PIEDRKLNWVWKLRVPEKIRMFTWQVLHNAI 257
D WK +G ++VR AYE + A P+ L +WKL PE++R+F W V H I
Sbjct: 609 DELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLVSHMVI 668
Query: 258 PVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISW 317
N VR HL+ ATC+ C E LH LRDC +W+R+ +N ++
Sbjct: 669 MTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFFSQFEWL 728
Query: 318 FSSM--ARGVHGIQFLAGVWGAWKWRCNWLLDSQRWP------IEVVWRRIAHDH----D 365
F+++ A+G F G+W AWKWRC + ++ I+ + + H +
Sbjct: 729 FTNLDPAKGDWPTLFSMGIWWAWKWRCGDVFGERKLCRDRLKFIKDIAEEVRKAHVGTLN 788
Query: 366 DWAWCAPSNDLLLCHPWSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGRWVAGCYLG 425
+ A ++ W P VK +DG+ R G I + QG W+ G L
Sbjct: 789 NHVKRARVERMI---RWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALN 845
Query: 426 EAAGNAFRAEAKALLDVLELAWNRGYSRLICDVNCDN-LVTILVEAEAVQMHSEFHVLHS 484
+ +A AE L +AW++G+ R+ ++N D+ LV + + H ++
Sbjct: 846 IGSCDAPLAELWGAYYGLLIAWDKGFRRV--ELNLDSELVVGFLSTGISKAHPLSFLVRL 903
Query: 485 ITQLLARDWHVRINSVHRDSNAVADHL 511
RDW VR++ V+R++N +AD L
Sbjct: 904 CQGFFTRDWLVRVSHVYREANRLADGL 930
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 127 bits (318), Expect = 2e-29
Identities = 128/499 (25%), Positives = 202/499 (39%), Gaps = 42/499 (8%)
Query: 59 E*F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMI 118
E F ++GK + +MI + D L +V + +Y + S WK I A+ +I
Sbjct: 859 EAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLI 918
Query: 119 DQRFEFRIGKGDT-SVWYQDWSGI--GIIANQIPFVHI------SDVNLTLCDLIQDNK- 168
Q IG G+T +VW W G A + H+ + +++ L+ D +
Sbjct: 919 KQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRD 978
Query: 169 WNLQRLYTNLPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAY----EWINHLA 224
WN + P + Q+ LA++P R D + W+ SG YSV+ Y E IN
Sbjct: 979 WNWNLVSLLFPDNTQENILALRPGGKETR-DRFTWEYSRSGHYSVKSGYWVMTEIINQ-R 1036
Query: 225 HNPIE------DRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCG 278
+NP E D +WKL VP KI F W+ ++N + V HLA + +C RC
Sbjct: 1037 NNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCP 1096
Query: 279 NVVEDGLHCLRDCSFS*DLWR-----RMGAINWRNFRYNN---IISWFSSM-ARGVHGIQ 329
+ E H L C F+ W W + N ++S S H
Sbjct: 1097 SHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHAL 1156
Query: 330 FLAGVWGAWKWRCNWLLDSQRWPIEVVWRRIAHDHDDW------AWCAPSNDLLLCHPWS 383
+W WK R + + + + V + D D W S+ C W
Sbjct: 1157 IPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRCVKWQ 1216
Query: 384 PPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGR--WVAGCYLGEAAGNAFRAEAKALLD 441
PP VKCN+DG++ +D+ G V+R+H GR W+ G + + E +AL
Sbjct: 1217 PPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWL-GLRALPSQQSVLETEVEALRW 1275
Query: 442 VLELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRINSVH 501
+ Y R+I + + LV+++ + + S + I LL V+
Sbjct: 1276 AVLSLSRFNYRRVIFESDSQYLVSLI--QNEMDIPSLAPRIQDIRNLLRHFEEVKFQFTR 1333
Query: 502 RDSNAVADHLVRRGAAAMS 520
R+ N VAD R + M+
Sbjct: 1334 REGNNVADRTARESLSLMN 1352
>At4g29090 putative protein
Length = 575
Score = 112 bits (281), Expect = 4e-25
Identities = 110/505 (21%), Positives = 214/505 (41%), Gaps = 52/505 (10%)
Query: 59 E*F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMI 118
E F ++GK + +M+ + + L +V + +Y + S +WK I +++++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 119 DQRFEFRIGKG-DTSVWYQDW-----SGIGIIANQIPFVHISDVN--LTLCDLIQDN--K 168
Q +G G D +W W + + ++P + V+ L + DLI ++ +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 169 WN---LQRLYTNLPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAH 225
W ++ L+ + L + +I D++ W SSG Y+V+ Y + + +
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRIL----DSYTWDYTSSGDYTVKSGYWVLTQIIN 237
Query: 226 N-----PIEDRKLN----WVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCAR 276
+ + LN +WK + KI+ F W+ L N++PV HL+ ++ C R
Sbjct: 238 KRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIR 297
Query: 277 CGNVVEDGLHCLRDCSFS*DLWR------RMGAINWRNFRYNNIISWFSSMARGVHGIQF 330
C + E H L C+F+ W +G W + Y N+ W ++ G +
Sbjct: 298 CPSCKETVNHLLFKCTFARLTWAISSIPIPLGG-EWADSIYVNLY-WVFNLGNGNPQWEK 355
Query: 331 LAG-----VWGAWKWRCNWLLDSQRWPIEVVWRRIAHDHDDW--------AWCAPSNDLL 377
+ +W WK R + + + + V RR D ++W P +
Sbjct: 356 ASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRS 415
Query: 378 LCHPWSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQG--RWVAGCYLGEAAGNAFRAE 435
C W PPP VKCN+D ++ D +R G V+R+ +G +W+ L + + AE
Sbjct: 416 SCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLK-SVLEAE 474
Query: 436 AKALLDVLELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHV 495
+A+ + Y+ +I + + L+ IL E S + + +LL++ V
Sbjct: 475 LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEI--WPSLKPTIQDLQRLLSQFTEV 532
Query: 496 RINSVHRDSNAVADHLVRRGAAAMS 520
+ + R+ N +A+ + R + ++
Sbjct: 533 KFVFIPREGNTLAERVARESLSFLN 557
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 110 bits (275), Expect = 2e-24
Identities = 93/384 (24%), Positives = 162/384 (41%), Gaps = 32/384 (8%)
Query: 61 F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQ 120
F ++ K +++++ L+ RV + +Y ++ S W+ IL+ R+++ Q
Sbjct: 839 FNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQ 898
Query: 121 RFEFRIGKGD-TSVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQ--DNKWNLQRLYTN 177
IG G T VW W G + +V+L + LI WNL L
Sbjct: 899 GLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDL 958
Query: 178 LPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHN---------PI 228
P + L +P +ED++ W +G YSV+ YE+++ H+ P
Sbjct: 959 FPWKDVEIILKQRPLFF--KEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPS 1016
Query: 229 EDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCL 288
+ + +W L KIR+F W+ LH AIPV + + SD C C E H L
Sbjct: 1017 VNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHIL 1076
Query: 289 RDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGV---------HGIQFLAG--VWGA 337
+C + +W + ++ ++N S +++M+R + H ++F++ +W
Sbjct: 1077 FECPLARQVW-AITHLSSAGSEFSN--SVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFL 1133
Query: 338 WKWRCNWLLDSQRWPIEVVWRRIAHDHDDW--AWCAPSND--LLLCHPWSPPPPDTVKCN 393
WK R L + + + + + +W A ND L W PP P +KCN
Sbjct: 1134 WKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWCPPLPGELKCN 1193
Query: 394 SDGSFREDVQRMGGVGVIRDHQGR 417
++ + G V+RD QG+
Sbjct: 1194 IGFAWSKQHHFSGASWVVRDSQGK 1217
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 107 bits (268), Expect = 1e-23
Identities = 120/523 (22%), Positives = 217/523 (40%), Gaps = 70/523 (13%)
Query: 51 WRLRHQGD------E*F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHD 104
W ++GD F ++ K +++ L R+ + Y +T+ + H
Sbjct: 1189 WGKENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHA 1248
Query: 105 SPIWKGILWARDMIDQRFEFRIGKGDTS-VWYQDWSGIGIIANQIPFVHISDVNLTLCDL 163
S W I + ++ Q R+G G T+ +W W + + + I D ++ + DL
Sbjct: 1249 SYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPW--LPTLPPRPARGPILDEDMKVADL 1306
Query: 164 IQDNK--WNLQRLYTNLPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWIN 221
++NK W+ ++ + + QQ D++ W + +Y+VR Y
Sbjct: 1307 WRENKREWD-PVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVAT 1365
Query: 222 HL------AHNPIE-DRKLNW-VWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDAT 273
H+ NP+E D L +W+L++ KI+ F W+ L A+ ++ +D T
Sbjct: 1366 HVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPT 1425
Query: 274 CARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGV-------- 325
C RC N E H + CS++ +WR NF +N + + ++ +
Sbjct: 1426 CQRCCNADETINHIIFTCSYAQVVWRS------ANFSGSNRLCFTDNLEENIRLILQGKK 1479
Query: 326 -------HGIQFLAGVWGAWKWRCNWLLDS-QRWPIEVVWRRIAHDHDDWAW-------- 369
+G+ +W WK R +L R+P +V ++ + +W
Sbjct: 1480 NQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVA-QKAEQEATEWVETMVNDTAI 1538
Query: 370 ---CAPSND--LLLCHPWSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGRWV-AGCY 423
A SND L WS PP +KCN D + + ++RD GR + +GC
Sbjct: 1539 SHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCA 1598
Query: 424 LGEAAGNAFRAEAKALLDVLELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLH 483
+ + +A +AEA L L++ W RGY + + + L ++ + E + H+L
Sbjct: 1599 KLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTE------DHHLLE 1652
Query: 484 SITQLLARDWHVR-----INSVHRDSNAVADHLVRRGAAAMSS 521
++ + R W + I V+R+ N AD L + A +MSS
Sbjct: 1653 TLLYDI-RFWMTKLPFSSIGYVNRERNLAADKLTKY-ANSMSS 1693
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 104 bits (259), Expect = 1e-22
Identities = 119/493 (24%), Positives = 197/493 (39%), Gaps = 57/493 (11%)
Query: 65 VVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQRFEF 124
++ K ++I+ + L+ RV++ +Y +D SI + + S W +L ++ +
Sbjct: 1247 LLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRH 1306
Query: 125 RIGKGDTSVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQDNKWNLQRLYTNLPHSLQQ 184
IG G G+ I + P ++ T ++ +N + + Y S
Sbjct: 1307 LIGDGQNIR-----IGLDNIVDSHPPRPLNTEE-TYKEMTINNLFERKGSYYFWDDSKIS 1360
Query: 185 QFLAVQPQICMNR--------EDAWIWKDGSSGRYSVRDAYEWINH------LAHNPIE- 229
QF+ ++R D IW ++G Y+VR Y + H A NP
Sbjct: 1361 QFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHG 1420
Query: 230 --DRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHC 287
D K +W L + K++ F W+ L A+ E + D +C RC E H
Sbjct: 1421 SIDLKTR-IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHA 1479
Query: 288 LRDCSFS*DLWRRMGAINWRN------FRYN--NIISWFSSMARG-VHGIQFLAGVWGAW 338
L C F+ WR + RN F N NI+++ H + + +W W
Sbjct: 1480 LFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIW 1539
Query: 339 KWRCNWLLDSQR-WPIEVVWRRIAHDHDDWAWC--------APSNDLLLCH---PWSPPP 386
K R N + + R P + V A HD W PS + W PP
Sbjct: 1540 KARNNVVFNKFRESPSKTVLSAKAETHD---WLNATQSHKKTPSPTRQIAENKIEWRNPP 1596
Query: 387 PDTVKCNSDGSFREDVQRMGGVG--VIRDHQGRWVA-GCYLGEAAGNAFRAEAKALLDVL 443
VKCN D F DVQ++ G +IR+H G ++ G N AE KALL L
Sbjct: 1597 ATYVKCNFDAGF--DVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAAL 1654
Query: 444 ELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEF-HVLHSITQLLARDWHVRINSVHR 502
+ W RGY+++ + +C L+ ++ + HS + L I+ + ++ + +
Sbjct: 1655 QQTWIRGYTQVFMEGDCQTLINLI---NGISFHSSLANHLEDISFWANKFASIQFGFIRK 1711
Query: 503 DSNAVADHLVRRG 515
N +A L + G
Sbjct: 1712 KGNKLAHVLAKYG 1724
>At3g31420 hypothetical protein
Length = 1491
Score = 103 bits (257), Expect = 2e-22
Identities = 104/483 (21%), Positives = 184/483 (37%), Gaps = 66/483 (13%)
Query: 59 E*F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMI 118
E F ++GK +++ + L RVL +Y +T++ + S +WK IL R+++
Sbjct: 1017 ENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPETNVMNAVQGRRASFVWKSILHGRNLL 1076
Query: 119 DQRFEFRIGKGDT-SVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQDNKWNLQRLYTN 177
+ +G G + W W + + + + P+
Sbjct: 1077 KKGLRCCVGDGSLINAWLDPW--LPLHSPRAPY--------------------------- 1107
Query: 178 LPHSLQQQFLAVQPQICMNREDAWI-WKDGSSGRYSVRDAYEWINHL-----AHNPIEDR 231
+Q+ Q +C D I W G Y+V+ AY HL H P D
Sbjct: 1108 -----KQEDAPEQLLVCSTARDDLIGWHYTKDGMYTVKSAYWLATHLPGTTGTHPPPGDI 1162
Query: 232 KLNWV-WKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRD 290
KL + WK + KI+ F W++L AI E+ H+ + C RC E H +
Sbjct: 1163 KLKQLLWKTKTAPKIKHFCWKILSGAIATGEMLRYRHINKQSICKRCCRDEETSQHLFFE 1222
Query: 291 CSFS*DLWRRMG--------AINWRNFRYNNIISWFSSMARGVHGIQFLAGVWGAWKWRC 342
C ++ WR G +I ++ + ++ S + F +W W+ R
Sbjct: 1223 CDYAKATWRGAGLPNLIFQDSIVTLEEKFRAMFTFNPSTTNYWRQLPFWI-LWRLWRSRN 1281
Query: 343 NWLLDSQRWPIEVVWRRIAHDHDDW-----------AWCAPSNDLLLCHPWSPPPPDTVK 391
+ P EV + D +W ++ + W+ P K
Sbjct: 1282 ILTFQQKHIPWEVTVQLAKQDALEWQDIEDRVQVINPLSRRHSNRYAANRWTRPVCGWKK 1341
Query: 392 CNSDGSFREDVQRMGGVGVIRDHQGRWVAGCYL-GEAAGNAFRAEAKALLDVLELAWNRG 450
CN DGS+ + G VIRD G+++ G G+ NA + +AL+ ++ W+ G
Sbjct: 1342 CNYDGSYSTIINSKAG-WVIRDEHGQFIGGGQAKGKHTNNALESALQALIIAMQSCWSHG 1400
Query: 451 YSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRINSVHRDSNAVADH 510
+++ +C DN+ + E ++ + I R R ++R +N AD
Sbjct: 1401 HTK-VC-FEGDNIEVYQILNEGKARFDVYNWIRDIQAWKRRFQECRFLWINRRNNKPADT 1458
Query: 511 LVR 513
L +
Sbjct: 1459 LAK 1461
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 101 bits (252), Expect = 9e-22
Identities = 114/491 (23%), Positives = 204/491 (41%), Gaps = 51/491 (10%)
Query: 65 VVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAH-QHDSPIWKGILWARDMIDQRFE 123
+ K +++K+ L RVL KY +S A S W+GIL RD++ +
Sbjct: 799 IEAKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLG 858
Query: 124 FRIGKGDT-SVWYQDWSGIGIIANQIPFVHISDVN--LTLCDLIQDN--KWNLQRLYTNL 178
+ IG+GD+ +VW + W + + Q P ++ N L++ DLI + WN++ + +L
Sbjct: 859 WSIGQGDSINVWTEAW--LSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHL 916
Query: 179 PHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNW--- 235
P + Q + + +D+ +W SG Y+ + Y + L P NW
Sbjct: 917 PQ-YEDQIRKITIN-ALPLQDSLVWLPVKSGEYTTKTGYA-LAKLNSFPASQLDFNWQKN 973
Query: 236 VWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS* 295
+WK+ K++ F W+ + A+PV E R ++ ++ TC RCG E LH + C ++
Sbjct: 974 IWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQ-TESSLHLMLLCPYAK 1032
Query: 296 DLWRRMGAINWRNFRYNNIISWFSSMARGVHGIQFLAG---------------VWGAWKW 340
+W + +N + SS+A + + + +W WK
Sbjct: 1033 KVWELAPVL------FNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKA 1086
Query: 341 RCNWLLDSQRWPIEVVWRRIAHDHDDWAWCAPSNDLLLCHP-----WSPPPPD--TVKCN 393
R + D+ E + + D W LL+ HP + P P+ C
Sbjct: 1087 RNRLIFDNHSCSEEGLVLKAILDARAWM----EAQLLIHHPSPISDYPSPTPNLKVTSCF 1142
Query: 394 SDGSFREDVQRMGGVGVIRDHQGRWVAGCYLGEAAGNAFRAEAKALLDVLELAWNRGYSR 453
D ++ G + ++ + G+A AE A+ L A + G +
Sbjct: 1143 VDAAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALSTGVRQ 1202
Query: 454 LICDVNCDNLVTILVEAEA-VQMHSEFHVLHSITQLLARDWHVRINSVHRDSNAVADHLV 512
L +C L+++L ++ V++ +LH I +L H+ + R SN VAD L
Sbjct: 1203 LNVFSDCKELISLLNSGKSIVELRG---LLHDIRELSVSFTHLCFFFIPRLSNVVADSLA 1259
Query: 513 RRGAAAMSSES 523
+ + + S S
Sbjct: 1260 KSALSVILSSS 1270
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 101 bits (252), Expect = 9e-22
Identities = 119/493 (24%), Positives = 195/493 (39%), Gaps = 57/493 (11%)
Query: 65 VVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQRFEF 124
++ K ++I+ + L+ RV++ +Y +D SI + + S W +L ++ +
Sbjct: 1021 LLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRH 1080
Query: 125 RIGKGDTSVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQDNKWNLQRLYTNLPHSLQQ 184
IG G G+ I + P ++ T ++ +N + + Y S
Sbjct: 1081 LIGDGQNIR-----IGLDNIVDSHPPRPLNTEE-TYKEMTINNLFERKGSYYFWDDSKIS 1134
Query: 185 QFLAVQPQICMNR--------EDAWIWKDGSSGRYSVRDAYEWINH------LAHNPIE- 229
QF+ ++R D IW ++G Y+VR Y + H A NP
Sbjct: 1135 QFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHG 1194
Query: 230 --DRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHC 287
D K +W L + K++ F W+ L A+ E + D C RC E H
Sbjct: 1195 SIDLKTR-IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHA 1253
Query: 288 LRDCSFS*DLWRRMGAINWRN------FRYN--NIISWFSSMARG-VHGIQFLAGVWGAW 338
L C F+ W + RN F N NI+++ H + + +W W
Sbjct: 1254 LFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIW 1313
Query: 339 KWRCNWLLDSQR-WPIEVVWRRIAHDHDDWAWC--------APSNDLLLCH---PWSPPP 386
K R N + + R P + V A HD W PS + W PP
Sbjct: 1314 KARNNVVFNKFRESPSKTVLSAKAETHD---WLNATQSHKKTPSPTRQIAENKIEWRNPP 1370
Query: 387 PDTVKCNSDGSFREDVQRMGGVG--VIRDHQGRWVA-GCYLGEAAGNAFRAEAKALLDVL 443
VKCN D F DVQ++ G +IR+H G ++ G N AE KALL L
Sbjct: 1371 ATYVKCNFDAGF--DVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAAL 1428
Query: 444 ELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEF-HVLHSITQLLARDWHVRINSVHR 502
+ W RGY+++ + +C L+ ++ + HS + L I+ + ++ + R
Sbjct: 1429 QQTWIRGYTQVFMEGDCQTLINLI---NGISFHSSLANHLEDISFWANKFASIQFGFIRR 1485
Query: 503 DSNAVADHLVRRG 515
N +A L + G
Sbjct: 1486 KGNKLAHVLAKYG 1498
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 99.0 bits (245), Expect = 6e-21
Identities = 78/327 (23%), Positives = 132/327 (39%), Gaps = 23/327 (7%)
Query: 61 F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQ 120
F ++ K +++++ L RV + KY + +A S WK IL +I +
Sbjct: 316 FNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILHGTKLISR 375
Query: 121 RFEFRIGKGDT-SVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQDNKWNLQRLYTNLP 179
++ G G+ +W +W + + L + DL+ + +WN L +
Sbjct: 376 GLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLLIEGRWNEDLLCKLIH 435
Query: 180 HSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAH---------NPIED 230
+ A++P I DA W G YSV+ Y + L+ N +
Sbjct: 436 QNDIPHIRAIRPSIT-GANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSA 494
Query: 231 RKL-NWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLR 289
+ + +WK P KI+ F W+ HNA+P R L +D TC RCG ED H L
Sbjct: 495 QTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLF 554
Query: 290 DCSFS*DLWRRM-------GAINWRNFRYN--NIISWFSSMARGVHGIQFLAGVWGAWKW 340
C S ++W + ++ +F N +I S + V F+ W WK
Sbjct: 555 QCRVSKEIWEQAHIKLCPGDSLMSNSFNQNLESIQKLNQSARKDVSLFPFIG--WRIWKM 612
Query: 341 RCNWLLDSQRWPIEVVWRRIAHDHDDW 367
R + + +++RW I ++ D W
Sbjct: 613 RNDLIFNNKRWSIPDSIQKALIDQQQW 639
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 98.2 bits (243), Expect = 1e-20
Identities = 95/353 (26%), Positives = 144/353 (39%), Gaps = 43/353 (12%)
Query: 197 REDAWIWKDGSSGRYSVRDAYEWINH------LAHNPIE---DRKLNWVWKLRVPEKIRM 247
+ D IW ++G Y+VR Y + H A NP D K +W L + K++
Sbjct: 115 KPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTR-IWNLPIMPKLKH 173
Query: 248 FTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLWRRMGAINWR 307
F W+ L A+ E + D +C RC E H L C F+ WR + R
Sbjct: 174 FLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIR 233
Query: 308 N------FRYN--NIISWFSSMARG-VHGIQFLAGVWGAWKWRCNWLLDSQR-WPIEVVW 357
N F N NI+++ H + + +W WK R N + + R P + V
Sbjct: 234 NQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVL 293
Query: 358 RRIAHDHDDWAWC--------APSNDLLLCH---PWSPPPPDTVKCNSDGSFREDVQRMG 406
A HD W PS + W PP VKCN D F DVQ++
Sbjct: 294 SAKAETHD---WLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF--DVQKLE 348
Query: 407 GVG--VIRDHQGRWVA-GCYLGEAAGNAFRAEAKALLDVLELAWNRGYSRLICDVNCDNL 463
G +IR+H G ++ G N AE KALL L+ W RGY+++ + +C L
Sbjct: 349 ATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTL 408
Query: 464 VTILVEAEAVQMHSEF-HVLHSITQLLARDWHVRINSVHRDSNAVADHLVRRG 515
+ ++ + HS + L I+ + ++ + R N +A L + G
Sbjct: 409 INLI---NGISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYG 458
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 95.5 bits (236), Expect = 7e-20
Identities = 96/404 (23%), Positives = 160/404 (38%), Gaps = 63/404 (15%)
Query: 59 E*F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMI 118
E F ++ K ++++ L+ R + +Y D + S IL+ R+++
Sbjct: 635 ESFNQALLAKQSWRILQYPSFLFARFFKSRYFDDEEFLEADLGVRPSYACCSILFGRELL 694
Query: 119 DQRFEFRIGKGDT-SVWYQDWSGIGIIANQIPFVHISDVNLTLC--DLI--QDNKWNLQR 173
+ +G G + +VW W I IA ++P VNL L DLI +D W +
Sbjct: 695 AKGLRKEVGNGKSLNVWMDPW--IFDIAPRLPLQRHFSVNLDLKVNDLINFEDRCWK-RD 751
Query: 174 LYTNLPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHN------- 226
L L + + + + + +N +D W+W +G YSV+ Y W+ ++
Sbjct: 752 LLEELFYPTDVELITKRNPV-VNMDDFWVWLHAKTGEYSVKSGY-WLAFQSNKLDLIQQA 809
Query: 227 ---PIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVED 283
P + VW + KI+MF W++L A+PV + +R ++ D C CG+ E
Sbjct: 810 NLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGES 869
Query: 284 GLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGVHGIQFLAG---------- 333
H L CS + +W G + F + N S F++ IQFL
Sbjct: 870 TNHVLFTCSMARQVWALSG-VPTPEFGFQN-ASIFAN-------IQFLFELKKMILVPDL 920
Query: 334 --------VWGAWKWRCNWLLDSQRW-PIEVVWRRIAHDHDDWAWCAPSNDLLL------ 378
+W WK R D + P+ + + D W + + +
Sbjct: 921 VKRSWPWVLWRLWKNRNKLFFDGITFCPLNSI---VKIQEDTLEWFQAQSQIRVSESEEG 977
Query: 379 ------CHPWSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQG 416
H W PPP VKCN ++ + GG V+RD G
Sbjct: 978 QRVIPFTHSWEPPPEGWVKCNIGSAWSGKKKVCGGAWVLRDEHG 1021
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 90.9 bits (224), Expect = 2e-18
Identities = 85/389 (21%), Positives = 157/389 (39%), Gaps = 43/389 (11%)
Query: 61 F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQ 120
F ++ K ++ S + ++ + +Y +T + S W+ IL+ R++++
Sbjct: 813 FNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELLNG 872
Query: 121 RFEFRIGKGD-TSVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQ--DNKWNLQRLYTN 177
+ IG G+ T+VW W G + + ++++ + LI WNL++L T
Sbjct: 873 GLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTRNWNLKKL-TE 931
Query: 178 LPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWIN-------------HLA 224
L H Q + Q + ++ ED++ W ++G Y+V+ YE + + +
Sbjct: 932 LFHEKDVQLIMHQRPL-ISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPS 990
Query: 225 HNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDG 284
NP+ D+ VW L KI++F W+ L A+ V + + + C C +E
Sbjct: 991 VNPLFDK----VWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETI 1046
Query: 285 LHCLRDCSFS*DLWR----RMGAINWRNFRYNNIISWF-SSMARGVHGIQFLAG---VWG 336
H L C F+ +W + A + ++NI +S G+ +W
Sbjct: 1047 NHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWE 1106
Query: 337 AWKWRCNWLLDSQRWPIEVVWRRIAHDHDDW--------AWCAPSNDLLLCHPWSPPPPD 388
WK R L + + + + W +PS H W+PPP
Sbjct: 1107 IWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKSSGGVSPSE-----HKWNPPPAG 1161
Query: 389 TVKCNSDGSFREDVQRMGGVGVIRDHQGR 417
+KCN ++ Q G V+RD G+
Sbjct: 1162 ELKCNIGVAWSRQKQLAGVSWVLRDSMGQ 1190
>At2g27870 putative non-LTR retroelement reverse transcriptase
Length = 314
Score = 87.8 bits (216), Expect = 1e-17
Identities = 73/271 (26%), Positives = 117/271 (42%), Gaps = 33/271 (12%)
Query: 265 RCHLASDATCARCGNVVEDGLHCLRDCSFS*DLWRRM-GAINWRNFRYNNIISW-FSSMA 322
R HL+ C C + +H LRDC +W R+ A R F +++ W F+++
Sbjct: 13 RRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLLEWLFANLG 72
Query: 323 ------RGVHGIQFLAGVWGAWKWRCN--------------WLLDSQRWP--IEVVWRRI 360
F +W AWKWRC +L D R V+ R +
Sbjct: 73 DRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETSMAHVIVRTL 132
Query: 361 AHDHDDWAWCAPSNDLLLCHPWSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGRWVA 420
+ H + + L+ WS P K N+DG+ R + GV+RD +G W
Sbjct: 133 SGGHGERV------ERLIA--WSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRG 184
Query: 421 GCYLGEAAGNAFRAEAKALLDVLELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFH 480
G L +A AE + L +AW R +RL +V+ + +V L + ++H
Sbjct: 185 GFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFL-KIGINEVHPLSF 243
Query: 481 VLHSITQLLARDWHVRINSVHRDSNAVADHL 511
++ ++RDW VRI+ V+R++N +AD L
Sbjct: 244 LVRLCHDFISRDWRVRISHVYREANRLADGL 274
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 81.6 bits (200), Expect = 1e-15
Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 10/240 (4%)
Query: 65 VVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQRFEF 124
++ K +++ + L R+L KY +S + + S W+ I+ R+++ + +
Sbjct: 760 LLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGW 819
Query: 125 RIGKGD-TSVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQDN--KWNLQRLYTNLPHS 181
I G+ S+W W I I +L + LI N +W+ ++ LP+
Sbjct: 820 LITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILPN- 878
Query: 182 LQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNW---VWK 238
+ + P D W SG+Y+ R Y I +A PI + NW +WK
Sbjct: 879 -YENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYG-IASVASIPIPQTQFNWQSNLWK 936
Query: 239 LRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLW 298
L+ KI+ W+ A+PV VR H++ A C RCG E H C F+ +W
Sbjct: 937 LQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCG-APESTTHLFFHCEFAAQVW 995
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 80.5 bits (197), Expect = 2e-15
Identities = 86/385 (22%), Positives = 150/385 (38%), Gaps = 35/385 (9%)
Query: 61 F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQ 120
F ++ K ++ SD L ++L+ +Y ++ S W+ IL+ R+++
Sbjct: 590 FNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVS 649
Query: 121 RFEFRIGKGD-TSVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQ--DNKWNLQRLYTN 177
+ IG G+ T VW +W + D+ L + LI WNL L
Sbjct: 650 GLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDL 709
Query: 178 LPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPI-----EDRK 232
P Q + Q + +R+D++ W + G Y+V+ Y+ + H + E
Sbjct: 710 FPWKEIQ--IICQQRPMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPS 767
Query: 233 LN----WVWKLRVPEKIRMFTWQVLHNAIPVNE-LWVRCHLASDATCARCGNVVEDGLHC 287
LN +W L KI++F W+VL A+ V + L R L D C+ C E H
Sbjct: 768 LNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDG-CSMCPEKNETLNHI 826
Query: 288 LRDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGVHGIQFLAG--------VWGAWK 339
L C + +W + + ++I + + + H + +W WK
Sbjct: 827 LFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPWIIWILWK 886
Query: 340 WRCNWLLDSQRWPIEVVWRRIAHDHDDWAWC-------APSNDLLLCHPWSPPPPDTVKC 392
R L + + + D +W P+ DL W PP + +KC
Sbjct: 887 NRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHELICSKEPTKDL----TWIPPLMNELKC 942
Query: 393 NSDGSFREDVQRMGGVGVIRDHQGR 417
N ++ + Q G V+R+ +GR
Sbjct: 943 NIGIAWSKKHQMAGVSWVVRNWKGR 967
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 76.6 bits (187), Expect = 3e-14
Identities = 75/316 (23%), Positives = 129/316 (40%), Gaps = 34/316 (10%)
Query: 65 VVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMIDQRFEF 124
++ K + ++I D L+ +V + +Y R ++ S W+ ++ AR ++ +
Sbjct: 649 LLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIK 708
Query: 125 RIGKGDT-SVWYQDWSGIGIIANQIPFV-----HISDVNLTLCDLI--QDNKWNLQRLYT 176
R+G G + SVW W I Q P I D +L + LI + N WN+ L
Sbjct: 709 RVGSGASISVWNDPW-----IPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNID-LLK 762
Query: 177 NLPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKL--- 233
L ++ P N ED W +G Y+V+ Y H A + +
Sbjct: 763 ELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGY----HTARLDLNEGTTLIG 818
Query: 234 -------NWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLH 286
++WK++ P K+R F WQ+L +PV+E + + D C CG E H
Sbjct: 819 PDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINH 878
Query: 287 CLRDCSFS*DLWR-----RMGAINWRNFRYNNIISWFSSMARGVHGIQFLAGVWGAWKWR 341
L C + +W I N + N+ F + GV + +W WK R
Sbjct: 879 TLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWIIWYIWKAR 938
Query: 342 CNWLLDS-QRWPIEVV 356
+ ++ + P+E++
Sbjct: 939 NEKVFENVDKDPMEIL 954
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 75.1 bits (183), Expect = 9e-14
Identities = 64/252 (25%), Positives = 101/252 (39%), Gaps = 14/252 (5%)
Query: 59 E*F*YCVVGKAVCQMIKKSDKLWVRVLEHKYLRDTSIHKVQAHQHDSPIWKGILWARDMI 118
E F ++ K + ++I+ + L RVL +Y R + ++ S W+ I+ A+ ++
Sbjct: 739 EEFNLVLLAKQLWRLIRFPNSLLSRVLRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLL 798
Query: 119 DQRFEFRIGKGD-TSVWYQDWSGIGIIANQIPFVHISDVNLTLCDLIQD--NKWNLQRLY 175
IG G T VW W ++I D +L + DLI +W L RL
Sbjct: 799 LSGLRRTIGSGMLTRVWEDPWIPSFPPRPAKSILNIRDTHLYVNDLIDPVTKQWKLGRLQ 858
Query: 176 TNLPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNW 235
+ S L ++P +D + W SG Y+V+ Y W P D
Sbjct: 859 ELVDPSDIPLILGIRPSRTYKSDD-FSWSFTKSGNYTVKSGY-WAARDLSRPTCDLPFQG 916
Query: 236 ---------VWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLH 286
VWK++ K + F WQ L + N+ H+ ++ C RCG E H
Sbjct: 917 PSVSALQAQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINH 976
Query: 287 CLRDCSFS*DLW 298
L C S +W
Sbjct: 977 LLFLCPPSRQIW 988
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.332 0.143 0.506
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,057,487
Number of Sequences: 26719
Number of extensions: 568920
Number of successful extensions: 1644
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1435
Number of HSP's gapped (non-prelim): 133
length of query: 547
length of database: 11,318,596
effective HSP length: 104
effective length of query: 443
effective length of database: 8,539,820
effective search space: 3783140260
effective search space used: 3783140260
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0299.5