BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0299.14
         (88 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g05550 unknown protein                                             146  2e-36
At5g27760 unknown protein                                             139  3e-34
At4g26140 putative beta-galactosidase                                  28  0.61
At2g31875 poly(ADP-ribose) like glycohydrolase                         28  0.80
At1g06710 hypothetical protein                                         26  3.0
At5g16030 unknown protein                                              26  4.0
At1g31817 30S ribosomal like protein S11                               25  6.8
At5g19180 putative ubiquitin activating enzyme E1 (ECR1)               25  8.8
At4g32320 L-ascorbate peroxidase - like protein                        25  8.8

>At3g05550 unknown protein
          Length = 97

 Score =  146 bits (368), Expect = 2e-36
 Identities = 70/80 (87%), Positives = 74/80 (92%)

Query: 1  MAEAKTQVESIRKWVVDHKLRTVGCLWLSGITGSIAYNWSRPNMKTSVKIIHARLHAQAL 60
          M E+KT+ E IRKWV DHKLRTVGCLWLSGITGSIAYNWS+P MKTSVKIIHARLHAQAL
Sbjct: 1  MVESKTKFEEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHRAEA 80
          TLAALAGAAVVEYYDH+ EA
Sbjct: 61 TLAALAGAAVVEYYDHKTEA 80


>At5g27760 unknown protein
          Length = 96

 Score =  139 bits (349), Expect = 3e-34
 Identities = 64/80 (80%), Positives = 74/80 (92%)

Query: 1  MAEAKTQVESIRKWVVDHKLRTVGCLWLSGITGSIAYNWSRPNMKTSVKIIHARLHAQAL 60
          MAE KT+V  IR+W+++HKLRTVGCLWLSGI+GSIAYNWS+P MKTSV+IIHARLHAQAL
Sbjct: 1  MAEPKTKVAEIREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYDHRAEA 80
          TLAALAGAA VEYYDH++ A
Sbjct: 61 TLAALAGAAAVEYYDHKSGA 80


>At4g26140 putative beta-galactosidase
          Length = 729

 Score = 28.5 bits (62), Expect = 0.61
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 27  WLSGITGSIAYN------WSRPNMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHRAEA 80
           W +G+ G +  N      W     K S K I  +   +AL++  LAG++ VE+ +    A
Sbjct: 558 WNTGVLGPVTLNGVNSGTWDMTKWKWSYKQIGTK--GEALSVHTLAGSSTVEWKEGSLVA 615

Query: 81  KR 82
           K+
Sbjct: 616 KK 617


>At2g31875 poly(ADP-ribose) like glycohydrolase
          Length = 548

 Score = 28.1 bits (61), Expect = 0.80
 Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 11/59 (18%)

Query: 3   EAKTQVESIRKWVVDHKLRTVGCLW----------LSGITGSIAYNWSRPNMKTSVKII 51
           EA   ++ + KW++ HK  TVG LW          L   T    ++W  P++ T+ K I
Sbjct: 488 EALRNLDQVTKWILSHKW-TVGDLWNMMLEYSAQRLYKQTSVGFFSWLLPSLATTNKAI 545


>At1g06710 hypothetical protein
          Length = 946

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 17/56 (30%)

Query: 8   VESIRKWVVDHKLRTVGCLWLSGITGSIAYNWSRPNMKTSVKIIHARLHAQALTLA 63
           +E  RKW   +++R VGC                PN+ T   +IHA L A+ ++ A
Sbjct: 493 IEQARKWF--NEMREVGCT---------------PNVVTYTALIHAYLKAKKVSYA 531


>At5g16030 unknown protein
          Length = 339

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 31  ITGSIAYNWSRPNMKTSVKIIHARLHAQALTLAALAGAAVV 71
           +  +IA N  +PN   +V++IH  L+A    L ALA   VV
Sbjct: 157 LMNNIAQN--KPNNNPNVRVIHEDLYAPDPELLALAEKKVV 195


>At1g31817 30S ribosomal like protein S11
          Length = 314

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 10/50 (20%)

Query: 6   TQVESIRKWVVDHKLRTVGCLWLSGITGSIAYNWSRPNMKTSVKIIHARL 55
           + ++ +R+ + D   RT G          I  ++ RPN++T+  IIH ++
Sbjct: 161 SDLDFVREVIEDEGRRTAG----------IFSHFQRPNLETNADIIHIKM 200


>At5g19180 putative ubiquitin activating enzyme E1 (ECR1)
          Length = 454

 Score = 24.6 bits (52), Expect = 8.8
 Identities = 15/64 (23%), Positives = 27/64 (41%), Gaps = 3/64 (4%)

Query: 13  KWVVDHKLRTVGCLWLSGITGSIAYNWSR---PNMKTSVKIIHARLHAQALTLAALAGAA 69
           KWV D  +R      + G+T S+     +   P + ++  II A    + L + +     
Sbjct: 254 KWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKT 313

Query: 70  VVEY 73
           +V Y
Sbjct: 314 LVNY 317


>At4g32320 L-ascorbate peroxidase - like protein
          Length = 329

 Score = 24.6 bits (52), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 30  GITGSIAYNWSRP---NMKTSVKII 51
           GI GSIAY   RP    +K S+K++
Sbjct: 136 GINGSIAYELERPENIGLKKSLKVL 160


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.127    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,689,696
Number of Sequences: 26719
Number of extensions: 47721
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 9
length of query: 88
length of database: 11,318,596
effective HSP length: 64
effective length of query: 24
effective length of database: 9,608,580
effective search space: 230605920
effective search space used: 230605920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)