BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0290.7
         (47 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g36170 acetyl-CoA carboxylase, putative, 5' partial                 77  2e-15
At1g36160 hypothetical protein, 3' partial                             77  2e-15
At1g36180 acetyl-CoA carboxylase, putative                             76  4e-15
At3g45020 unknown protein                                              27  1.5
At4g33090 aminopeptidase like protein                                  25  9.8

>At1g36170 acetyl-CoA carboxylase, putative, 5' partial
          Length = 1865

 Score = 76.6 bits (187), Expect = 2e-15
 Identities = 35/43 (81%), Positives = 36/43 (83%)

Query: 5  NPDYGFNPTGWEVQELGFKSKPNVWAYFSVKSGGGIHEFLDSQ 47
          +PD GF PT   VQEL FKSKPNVWAYFSVKSGGGIHEF DSQ
Sbjct: 57 DPDDGFKPTSGRVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQ 99


>At1g36160 hypothetical protein, 3' partial
          Length = 2252

 Score = 76.6 bits (187), Expect = 2e-15
 Identities = 35/43 (81%), Positives = 36/43 (83%)

Query: 5   NPDYGFNPTGWEVQELGFKSKPNVWAYFSVKSGGGIHEFLDSQ 47
           +PD GF PT   VQEL FKSKPNVWAYFSVKSGGGIHEF DSQ
Sbjct: 439 DPDDGFKPTSGRVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQ 481


>At1g36180 acetyl-CoA carboxylase, putative
          Length = 2359

 Score = 75.9 bits (185), Expect = 4e-15
 Identities = 33/43 (76%), Positives = 37/43 (85%)

Query: 5   NPDYGFNPTGWEVQELGFKSKPNVWAYFSVKSGGGIHEFLDSQ 47
           +PD GF PT  E+QEL FKSKPN+W+YFSVKSGGGIHEF DSQ
Sbjct: 541 DPDDGFKPTSGEIQELSFKSKPNMWSYFSVKSGGGIHEFSDSQ 583


>At3g45020 unknown protein
          Length = 133

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 16  EVQELGFKSKPNVWAYFSVKSGGGIHEFLD 45
           E+++ GFKS+  VWA  +     G+   LD
Sbjct: 87  EIEKKGFKSRTKVWAVINSLRNNGVTLILD 116


>At4g33090 aminopeptidase like protein
          Length = 879

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 8   YGFNPTGWEVQELGFKSKPNVWAYFSVKSGGG 39
           YG +   WE +E+ +K     W Y     G G
Sbjct: 776 YGLSGVSWEGREVAWKWLQEKWEYIGNTWGSG 807


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,312,138
Number of Sequences: 26719
Number of extensions: 38281
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 5
length of query: 47
length of database: 11,318,596
effective HSP length: 23
effective length of query: 24
effective length of database: 10,704,059
effective search space: 256897416
effective search space used: 256897416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)