Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0280a.7
         (121 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g13960 unknown protein (At5g13960)                                  73  3e-14
At3g04380 Su(VAR)3-9-related protein 4                                 38  7e-04
At2g23750 putative SET-domain transcriptional regulator                35  0.005
At4g13460 putative protein                                             33  0.023
At1g73100 putative protein                                             32  0.038
At2g35160 similar to mammalian MHC III region protein G9a              32  0.050
At2g33290 similar to mammalian MHC III region protein G9a              32  0.050
At2g22740 similar to mammalian MHC III region protein G9a              32  0.066
At5g04940 SET-domain protein-like                                      29  0.33
At3g03750 unknown protein                                              29  0.33
At1g77010                                                              29  0.43
At1g04050 hypothetical protein                                         28  0.56
At2g29760 hypothetical protein                                         27  1.2
At5g41140 putative protein                                             27  1.6
At2g19880 unknown protein                                              27  1.6
At3g09060 hypothetical protein                                         27  2.1
At3g28740 cytochrome P450 like protein                                 26  2.8
At2g35630 similar to ch-TOG protein from Homo sapiens                  26  2.8
At1g54620                                                              26  2.8
At4g13650 unknown protein                                              26  3.6

>At5g13960 unknown protein (At5g13960)
          Length = 624

 Score = 72.8 bits (177), Expect = 3e-14
 Identities = 38/99 (38%), Positives = 61/99 (61%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           NR SQK L++ L+V+    KGWAV + ++I  G+PV EY+  +R+  ++   S +E  FE
Sbjct: 437 NRTSQKRLRFNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRRTADVDTISDNEYIFE 496

Query: 83  IDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDEETME 121
           IDC + +  + GR R L +V++P +  V +S +DE   E
Sbjct: 497 IDCQQTMQGLGGRQRRLRDVAVPMNNGVSQSSEDENAPE 535


>At3g04380 Su(VAR)3-9-related protein 4
          Length = 492

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 16/99 (16%)

Query: 23  NRISQKDLQYCLQVYL-KISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGF 81
           NR+ Q+ ++  LQVY  +  KGW + T   +  GT + EY+ E+  N EL   +V     
Sbjct: 293 NRVVQRGIRCQLQVYFTQEGKGWGLRTLQDLPKGTFICEYIGEILTNTELYDRNVR---- 348

Query: 82  EIDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDEETM 120
                          R  + V+L A +  E+ + DEE +
Sbjct: 349 -----------SSSERHTYPVTLDADWGSEKDLKDEEAL 376


>At2g23750 putative SET-domain transcriptional regulator
          Length = 203

 Score = 35.4 bits (80), Expect = 0.005
 Identities = 17/43 (39%), Positives = 26/43 (59%)

Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
          NR+ Q  ++  L+V+   SKGW +   + IL GT V EY+ E+
Sbjct: 36 NRVLQNGIRAKLEVFRTESKGWGLRACEHILRGTFVCEYIGEV 78


>At4g13460 putative protein
          Length = 650

 Score = 33.1 bits (74), Expect = 0.023
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEY 61
           NR++QK L+  L+V+  +  GW V + D +  G  + EY
Sbjct: 484 NRVTQKGLRNRLEVFRSLETGWGVRSLDVLHAGAFICEY 522


>At1g73100 putative protein
          Length = 669

 Score = 32.3 bits (72), Expect = 0.038
 Identities = 15/49 (30%), Positives = 28/49 (56%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVEL 71
           NR+ Q  L+  L+V+   ++GW + + D +  G+ + EY  E++ N  L
Sbjct: 485 NRVIQTGLKSRLEVFKTRNRGWGLRSWDSLRAGSFICEYAGEVKDNGNL 533


>At2g35160 similar to mammalian MHC III region protein G9a
          Length = 794

 Score = 32.0 bits (71), Expect = 0.050
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 24  RISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           R+SQ  ++  L+++   S+GW V + + I  G+ + EY  EL
Sbjct: 639 RVSQHGIKIKLEIFKTESRGWGVRSLESIPIGSFICEYAGEL 680


>At2g33290 similar to mammalian MHC III region protein G9a
          Length = 651

 Score = 32.0 bits (71), Expect = 0.050
 Identities = 15/39 (38%), Positives = 22/39 (55%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEY 61
           +R++QK L+  L+V+     GW V T D I  G  + EY
Sbjct: 486 SRVTQKGLRNRLEVFRSKETGWGVRTLDLIEAGAFICEY 524


>At2g22740 similar to mammalian MHC III region protein G9a
          Length = 790

 Score = 31.6 bits (70), Expect = 0.066
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 24  RISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVE 70
           R++Q  ++  L+++   S+GW V     I  G+ + EYV EL ++ E
Sbjct: 608 RVTQHGIKLPLEIFKTKSRGWGVRCLKSIPIGSFICEYVGELLEDSE 654


>At5g04940 SET-domain protein-like
          Length = 670

 Score = 29.3 bits (64), Expect = 0.33
 Identities = 16/68 (23%), Positives = 35/68 (50%), Gaps = 1/68 (1%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           N+++Q  ++  L+V+   ++GW + + D I  G+ +  YV E  K+   V  +++   + 
Sbjct: 486 NKVTQMGVKVRLEVFKTANRGWGLRSWDAIRAGSFICIYVGE-AKDKSKVQQTMANDDYT 544

Query: 83  IDCLKIIN 90
            D   + N
Sbjct: 545 FDTTNVYN 552


>At3g03750 unknown protein
          Length = 354

 Score = 29.3 bits (64), Expect = 0.33
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           NR++QK +   L++     KGW +     I  G  + EY  EL
Sbjct: 182 NRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGEL 224


>At1g77010 
          Length = 695

 Score = 28.9 bits (63), Expect = 0.43
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 72  VIDSVSECGFEIDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDEETME 121
           ++D  S+CG  ++  K+ +EVE  + +L N  +   F   R  D +   E
Sbjct: 359 LLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFE 408


>At1g04050 hypothetical protein
          Length = 468

 Score = 28.5 bits (62), Expect = 0.56
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 23  NRISQKDLQYCLQVYLKIS-KGWAVNTRDFILFGTPVLEYVKELRKNVEL 71
           NR+ Q+ +   LQV+   + KGW + T + +  G  + EY+ E+    EL
Sbjct: 320 NRVVQRGMHNKLQVFFTPNGKGWGLRTLEKLPKGAFICEYIGEILTIPEL 369


>At2g29760 hypothetical protein
          Length = 738

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 54  FGTPVLEYVKELRKNVEL-----VIDSVSECGFEIDCLKIINEVEGRNRL 98
           FG  V  Y++E R NV L     ++D  ++CG   D  ++ + +E ++ +
Sbjct: 250 FGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299


>At5g41140 putative protein
          Length = 983

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 59  LEYVKELRKNVELVIDSVSECGFE-IDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDE 117
           L+Y K+L  N+ L +    E   E I  ++ +  +EG+ R    V LP     ER+ ++ 
Sbjct: 385 LDYEKDLNSNLRLQLQKTQESNTELILAVQDLEAMEGQ-RTKKTVDLPGPRTCERNTEES 443

Query: 118 ETM 120
             M
Sbjct: 444 RRM 446


>At2g19880 unknown protein
          Length = 519

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 14/54 (25%), Positives = 28/54 (50%), Gaps = 1/54 (1%)

Query: 32  YCLQVY-LKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFEID 84
           YC+  Y +  S G+A   R F L+G  ++ +  + R++   V+  + + G+  D
Sbjct: 222 YCIYEYHMPCSMGFATGGRTFFLWGGCMMMHADDFRQDRYGVVSGLRDGGYSDD 275


>At3g09060 hypothetical protein
          Length = 687

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 3/57 (5%)

Query: 67  KNVELVIDSVSECGFEIDCLKIINEVEGRNR---LLHNVSLPASFCVERSVDDEETM 120
           K   ++I  +S+CG   DCLKI   ++   R   L    SL    C   +VD  E++
Sbjct: 256 KTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESV 312


>At3g28740 cytochrome P450 like protein
          Length = 509

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 4/65 (6%)

Query: 40  ISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFEIDCLKIINEVEGRNRLL 99
           +  G A N  D+     P+L YV    K+V+ +   V E    +   K + +V+G   + 
Sbjct: 225 VVSGGAGNAADYF----PILRYVTNYEKHVKKLAGRVDEFLQSLVNEKRVEKVKGNTMID 280

Query: 100 HNVSL 104
           H +SL
Sbjct: 281 HLLSL 285


>At2g35630 similar to ch-TOG protein from Homo sapiens
          Length = 2021

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 10/39 (25%), Positives = 24/39 (60%)

Query: 58  VLEYVKELRKNVELVIDSVSECGFEIDCLKIINEVEGRN 96
           +LE +KE +++V   +    +  ++  CL +++ +EG+N
Sbjct: 372 LLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEGKN 410


>At1g54620 
          Length = 182

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 22/101 (21%)

Query: 21  FDNRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVK---------ELRKNVEL 71
           +  R+S+K LQ CL++Y   S+G+           T  L+Y+K          L+K  E 
Sbjct: 93  YKGRLSKKLLQKCLKLY---SEGYDAL--------TSALKYIKVRDLFKVSVHLQKAKE- 140

Query: 72  VIDSVSECGFEIDCLKIINEVEGRNRLLHNVSLPASFCVER 112
              S+ E GF  D  +I    +  + L   +++P SF + R
Sbjct: 141 -APSICEMGFNGDNKQISPMKKENDVLFDVINIPYSFNMNR 180


>At4g13650 unknown protein
          Length = 1024

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 15/53 (28%), Positives = 25/53 (46%), Gaps = 11/53 (20%)

Query: 60  EYVKELRKNVELVIDSVSECGFEIDCLKIINEVEGRNR----LLHNVSLPASF 108
           EY ++L K         SE G+  DC  ++NE++   +     +H+  L  SF
Sbjct: 919 EYFQDLTKRA-------SEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISF 964


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.337    0.148    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,560,942
Number of Sequences: 26719
Number of extensions: 94667
Number of successful extensions: 379
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 32
length of query: 121
length of database: 11,318,596
effective HSP length: 97
effective length of query: 24
effective length of database: 8,726,853
effective search space: 209444472
effective search space used: 209444472
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (24.6 bits)


Lotus: description of TM0280a.7