Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0280a.5
         (151 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g04720 hevein-like protein precursor                               182  8e-47
At1g10270 unknown protein                                              28  1.9
At2g17190 ubiquitin-like protein                                       28  2.5
At1g01140 SOS2-like protein kinase PKS6/CBL-interacting protein ...    28  2.5
At5g28460 putative protein                                             27  5.5
At5g28370 putative protein                                             27  5.5
At3g61520 putative protein                                             27  5.5
At2g27100 unknown protein                                              27  5.5
At2g17200 ubiquitin-like protein                                       27  5.5
At1g63180 uridine diphosphate glucose epimerase like protein           27  5.5
At1g12780 uridine diphosphate glucose epimerase                        26  7.2
At5g52160 unknown protein                                              26  9.3
At3g11460 hypothetical protein                                         26  9.3

>At3g04720 hevein-like protein precursor
          Length = 212

 Score =  182 bits (461), Expect = 8e-47
 Identities = 79/122 (64%), Positives = 97/122 (78%)

Query: 30  GQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRD 89
           G+SA+NV ATY+ YNP Q  W+L    AYC+TW+A+KP AWR KYGWTAFCGPAG  G+ 
Sbjct: 71  GESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQA 130

Query: 90  SCGKCLRVRNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSNGQGNHQGHLTVNYRFVN 149
           SCGKCLRV+NT T    TVRIVDQC+NGGLDLDV +F ++D++G G  QGHL V+Y+FV+
Sbjct: 131 SCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVD 190

Query: 150 CG 151
           CG
Sbjct: 191 CG 192


>At1g10270 unknown protein
          Length = 913

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 30  GQSANNVMATYNLYNP---------QQIGWNLLTAGAYCATWNANKP-----LAWRKKYG 75
           GQ+A       N  NP         QQ  W+  TAG    +W+   P      +W ++ G
Sbjct: 657 GQTAGGAYKANNGQNPSWSNTSDNQQQQSWSNQTAGQQPPSWSRQAPGYQQQQSWSQQSG 716

Query: 76  WTAFCGPAGAHGRDSCGKCLRVRNTATGDE 105
           W++  G   +    + G+     N   G +
Sbjct: 717 WSSPSGHQQSWTNQTAGQQQPWANQTPGQQ 746


>At2g17190 ubiquitin-like protein
          Length = 538

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 20/52 (38%), Positives = 26/52 (49%), Gaps = 2/52 (3%)

Query: 98  RNTATGDEATVRIVDQCAN-GGLDLDVNVFRRLDSNG-QGNHQGHLTVNYRF 147
           RNTA  D          AN GGLDL +N+F  L + G  G +Q ++    RF
Sbjct: 445 RNTAGQDPTQTGAATGTANNGGLDLLMNMFGSLGAGGLSGTNQPNVPPEERF 496


>At1g01140 SOS2-like protein kinase PKS6/CBL-interacting protein
           kinase 9 (CIPK9)
          Length = 447

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 87  GRDSCGKCLRVRNTATGDEATVRIVDQ 113
           G  S  K    +NT TGD+A ++I+D+
Sbjct: 26  GEGSFAKVKYAKNTVTGDQAAIKILDR 52


>At5g28460 putative protein
          Length = 766

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 7/74 (9%)

Query: 57  AYCATWNANKPLAWRKKYGWTAFCGP-AGAHGRDSCGKCLRVRNTATGDEATVRIVDQCA 115
           A C+  N  K + W +K    A C P A  +     G C +VR     D   +R+V++  
Sbjct: 485 ACCSVSNVEKAMYWYEKM-LEAGCSPDAKIYYALISGLC-QVRR----DHDAIRVVEKLK 538

Query: 116 NGGLDLDVNVFRRL 129
            GG  LD+  +  L
Sbjct: 539 EGGFSLDLLAYNML 552


>At5g28370 putative protein
          Length = 727

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 7/74 (9%)

Query: 57  AYCATWNANKPLAWRKKYGWTAFCGP-AGAHGRDSCGKCLRVRNTATGDEATVRIVDQCA 115
           A C+  N  K + W +K    A C P A  +     G C +VR     D   +R+V++  
Sbjct: 485 ACCSVSNVEKAMYWYEKM-LEAGCSPDAKIYYALISGLC-QVRR----DHDAIRVVEKLK 538

Query: 116 NGGLDLDVNVFRRL 129
            GG  LD+  +  L
Sbjct: 539 EGGFSLDLLAYNML 552


>At3g61520 putative protein
          Length = 766

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 7/74 (9%)

Query: 57  AYCATWNANKPLAWRKKYGWTAFCGP-AGAHGRDSCGKCLRVRNTATGDEATVRIVDQCA 115
           A C+  N  K + W +K    A C P A  +     G C +VR     D   +R+V++  
Sbjct: 485 ACCSVSNVEKAMYWYEKM-LEAGCSPDAKIYYALISGLC-QVRR----DHDAIRVVEKLK 538

Query: 116 NGGLDLDVNVFRRL 129
            GG  LD+  +  L
Sbjct: 539 EGGFSLDLLAYNML 552


>At2g27100 unknown protein
          Length = 720

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 4/46 (8%)

Query: 72  KKYGWTAFCGPAGA----HGRDSCGKCLRVRNTATGDEATVRIVDQ 113
           +KYGW   CG  G     H  +   K L++++T    E T ++ ++
Sbjct: 492 EKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREE 537


>At2g17200 ubiquitin-like protein
          Length = 551

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 98  RNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSNG-QGNHQGHLTVNYRF 147
           RNTA+ D           NGGLDL +N+F  L + G  G +Q ++    R+
Sbjct: 460 RNTASQDAGQTGAATG-NNGGLDLLMNMFGSLGAGGLSGTNQSNVPPEERY 509


>At1g63180 uridine diphosphate glucose epimerase like protein
          Length = 351

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (51%)

Query: 58  YCATWNANKPLAWRKKYGWTAFC 80
           Y +T  A K L W+ KYG    C
Sbjct: 311 YASTQKAEKELGWKAKYGVDEMC 333


>At1g12780 uridine diphosphate glucose epimerase
          Length = 351

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (51%)

Query: 58  YCATWNANKPLAWRKKYGWTAFC 80
           Y +T  A K L W+ KYG    C
Sbjct: 311 YASTEKAEKELGWKAKYGVDEMC 333


>At5g52160 unknown protein
          Length = 96

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 4  RISSSITQRKLSIVAVWWLIAATFANGQSANNVMATYNL 42
          + SS    +   +VA+  ++AAT  +GQS N  ++T N+
Sbjct: 6  KYSSMSFMKVAMMVALVLVVAATVVDGQSCNAQLSTLNV 44


>At3g11460 hypothetical protein
          Length = 623

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 76  WTAFCGPAGAHGRDSCGKCL---RVRNTATGDEAT-VRIVDQCANGGL-DLDVNVFRRL 129
           WTA  G  G HG    G  L    ++     D A  V ++  C++ GL D  + +FR +
Sbjct: 326 WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 384


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.134    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,559,284
Number of Sequences: 26719
Number of extensions: 142779
Number of successful extensions: 264
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 14
length of query: 151
length of database: 11,318,596
effective HSP length: 90
effective length of query: 61
effective length of database: 8,913,886
effective search space: 543747046
effective search space used: 543747046
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)


Lotus: description of TM0280a.5