BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0280a.5
(151 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04720 hevein-like protein precursor 182 8e-47
At1g10270 unknown protein 28 1.9
At2g17190 ubiquitin-like protein 28 2.5
At1g01140 SOS2-like protein kinase PKS6/CBL-interacting protein ... 28 2.5
At5g28460 putative protein 27 5.5
At5g28370 putative protein 27 5.5
At3g61520 putative protein 27 5.5
At2g27100 unknown protein 27 5.5
At2g17200 ubiquitin-like protein 27 5.5
At1g63180 uridine diphosphate glucose epimerase like protein 27 5.5
At1g12780 uridine diphosphate glucose epimerase 26 7.2
At5g52160 unknown protein 26 9.3
At3g11460 hypothetical protein 26 9.3
>At3g04720 hevein-like protein precursor
Length = 212
Score = 182 bits (461), Expect = 8e-47
Identities = 79/122 (64%), Positives = 97/122 (78%)
Query: 30 GQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRD 89
G+SA+NV ATY+ YNP Q W+L AYC+TW+A+KP AWR KYGWTAFCGPAG G+
Sbjct: 71 GESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQA 130
Query: 90 SCGKCLRVRNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSNGQGNHQGHLTVNYRFVN 149
SCGKCLRV+NT T TVRIVDQC+NGGLDLDV +F ++D++G G QGHL V+Y+FV+
Sbjct: 131 SCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVD 190
Query: 150 CG 151
CG
Sbjct: 191 CG 192
>At1g10270 unknown protein
Length = 913
Score = 28.1 bits (61), Expect = 1.9
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 30 GQSANNVMATYNLYNP---------QQIGWNLLTAGAYCATWNANKP-----LAWRKKYG 75
GQ+A N NP QQ W+ TAG +W+ P +W ++ G
Sbjct: 657 GQTAGGAYKANNGQNPSWSNTSDNQQQQSWSNQTAGQQPPSWSRQAPGYQQQQSWSQQSG 716
Query: 76 WTAFCGPAGAHGRDSCGKCLRVRNTATGDE 105
W++ G + + G+ N G +
Sbjct: 717 WSSPSGHQQSWTNQTAGQQQPWANQTPGQQ 746
>At2g17190 ubiquitin-like protein
Length = 538
Score = 27.7 bits (60), Expect = 2.5
Identities = 20/52 (38%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 98 RNTATGDEATVRIVDQCAN-GGLDLDVNVFRRLDSNG-QGNHQGHLTVNYRF 147
RNTA D AN GGLDL +N+F L + G G +Q ++ RF
Sbjct: 445 RNTAGQDPTQTGAATGTANNGGLDLLMNMFGSLGAGGLSGTNQPNVPPEERF 496
>At1g01140 SOS2-like protein kinase PKS6/CBL-interacting protein
kinase 9 (CIPK9)
Length = 447
Score = 27.7 bits (60), Expect = 2.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 87 GRDSCGKCLRVRNTATGDEATVRIVDQ 113
G S K +NT TGD+A ++I+D+
Sbjct: 26 GEGSFAKVKYAKNTVTGDQAAIKILDR 52
>At5g28460 putative protein
Length = 766
Score = 26.6 bits (57), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 7/74 (9%)
Query: 57 AYCATWNANKPLAWRKKYGWTAFCGP-AGAHGRDSCGKCLRVRNTATGDEATVRIVDQCA 115
A C+ N K + W +K A C P A + G C +VR D +R+V++
Sbjct: 485 ACCSVSNVEKAMYWYEKM-LEAGCSPDAKIYYALISGLC-QVRR----DHDAIRVVEKLK 538
Query: 116 NGGLDLDVNVFRRL 129
GG LD+ + L
Sbjct: 539 EGGFSLDLLAYNML 552
>At5g28370 putative protein
Length = 727
Score = 26.6 bits (57), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 7/74 (9%)
Query: 57 AYCATWNANKPLAWRKKYGWTAFCGP-AGAHGRDSCGKCLRVRNTATGDEATVRIVDQCA 115
A C+ N K + W +K A C P A + G C +VR D +R+V++
Sbjct: 485 ACCSVSNVEKAMYWYEKM-LEAGCSPDAKIYYALISGLC-QVRR----DHDAIRVVEKLK 538
Query: 116 NGGLDLDVNVFRRL 129
GG LD+ + L
Sbjct: 539 EGGFSLDLLAYNML 552
>At3g61520 putative protein
Length = 766
Score = 26.6 bits (57), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 7/74 (9%)
Query: 57 AYCATWNANKPLAWRKKYGWTAFCGP-AGAHGRDSCGKCLRVRNTATGDEATVRIVDQCA 115
A C+ N K + W +K A C P A + G C +VR D +R+V++
Sbjct: 485 ACCSVSNVEKAMYWYEKM-LEAGCSPDAKIYYALISGLC-QVRR----DHDAIRVVEKLK 538
Query: 116 NGGLDLDVNVFRRL 129
GG LD+ + L
Sbjct: 539 EGGFSLDLLAYNML 552
>At2g27100 unknown protein
Length = 720
Score = 26.6 bits (57), Expect = 5.5
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 4/46 (8%)
Query: 72 KKYGWTAFCGPAGA----HGRDSCGKCLRVRNTATGDEATVRIVDQ 113
+KYGW CG G H + K L++++T E T ++ ++
Sbjct: 492 EKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREE 537
>At2g17200 ubiquitin-like protein
Length = 551
Score = 26.6 bits (57), Expect = 5.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 98 RNTATGDEATVRIVDQCANGGLDLDVNVFRRLDSNG-QGNHQGHLTVNYRF 147
RNTA+ D NGGLDL +N+F L + G G +Q ++ R+
Sbjct: 460 RNTASQDAGQTGAATG-NNGGLDLLMNMFGSLGAGGLSGTNQSNVPPEERY 509
>At1g63180 uridine diphosphate glucose epimerase like protein
Length = 351
Score = 26.6 bits (57), Expect = 5.5
Identities = 10/23 (43%), Positives = 12/23 (51%)
Query: 58 YCATWNANKPLAWRKKYGWTAFC 80
Y +T A K L W+ KYG C
Sbjct: 311 YASTQKAEKELGWKAKYGVDEMC 333
>At1g12780 uridine diphosphate glucose epimerase
Length = 351
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/23 (43%), Positives = 12/23 (51%)
Query: 58 YCATWNANKPLAWRKKYGWTAFC 80
Y +T A K L W+ KYG C
Sbjct: 311 YASTEKAEKELGWKAKYGVDEMC 333
>At5g52160 unknown protein
Length = 96
Score = 25.8 bits (55), Expect = 9.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 4 RISSSITQRKLSIVAVWWLIAATFANGQSANNVMATYNL 42
+ SS + +VA+ ++AAT +GQS N ++T N+
Sbjct: 6 KYSSMSFMKVAMMVALVLVVAATVVDGQSCNAQLSTLNV 44
>At3g11460 hypothetical protein
Length = 623
Score = 25.8 bits (55), Expect = 9.3
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 76 WTAFCGPAGAHGRDSCGKCL---RVRNTATGDEAT-VRIVDQCANGGL-DLDVNVFRRL 129
WTA G G HG G L ++ D A V ++ C++ GL D + +FR +
Sbjct: 326 WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 384
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.134 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,559,284
Number of Sequences: 26719
Number of extensions: 142779
Number of successful extensions: 264
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 14
length of query: 151
length of database: 11,318,596
effective HSP length: 90
effective length of query: 61
effective length of database: 8,913,886
effective search space: 543747046
effective search space used: 543747046
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0280a.5