BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0279a.6
(1582 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g45520 copia-like polyprotein 312 9e-85
At2g07550 putative retroelement pol polyprotein 309 7e-84
At2g13930 putative retroelement pol polyprotein 308 1e-83
At5g35820 copia-like retrotransposable element 297 4e-80
At4g10460 putative retrotransposon 291 2e-78
At2g21460 putative retroelement pol polyprotein 281 3e-75
At1g37110 280 5e-75
At2g21310 putative retroelement pol polyprotein 277 4e-74
At4g21360 putative transposable element 254 3e-67
At1g47360 polyprotein, putative 253 5e-67
At3g60170 putative protein 203 6e-52
At1g32590 hypothetical protein, 5' partial 202 1e-51
At1g48710 hypothetical protein 196 7e-50
At1g58140 hypothetical protein 196 9e-50
At3g59720 copia-type reverse transcriptase-like protein 195 2e-49
At3g61330 copia-type polyprotein 194 3e-49
At4g04380 putative polyprotein 187 3e-47
At2g15700 copia-like retroelement pol polyprotein 184 3e-46
At2g19840 copia-like retroelement pol polyprotein 183 6e-46
At4g03810 putative retrotransposon protein 178 2e-44
>At3g45520 copia-like polyprotein
Length = 1363
Score = 312 bits (800), Expect = 9e-85
Identities = 177/469 (37%), Positives = 260/469 (54%), Gaps = 26/469 (5%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
MSK L N+++ KQ+LYS KM E ++ ++ F +I+ADL L V V DED+ I+LL SL
Sbjct: 108 MSKALPNRIYLKQKLYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSL 167
Query: 150 PGSYDHLVTTLTY--GKDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQDRGR 207
P +D L TL Y GK ++LD +++ + SV++ EGL+VK + R
Sbjct: 168 PKPFDQLKDTLKYSSGKTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDKAEN-R 226
Query: 208 GKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRS----------------GKS 251
G+ + D GK KRSKSK ++ C+ C + GH K CPN++ GK
Sbjct: 227 GRSEQKDKGKGKRSKSKSKRG--CWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKG 284
Query: 252 GNSSSAANVVQSDGSCSEEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFGY 311
+ N V+S G E L + D W++D+GC HMT REW F G
Sbjct: 285 NLVEGSVNFVESAGMFVSEALSSTD-IHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGS 343
Query: 312 VYLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEEN 371
V +G+ +KG+ V+I D+G TL VRY+P++ +NL+SLGT + G+ F+SE
Sbjct: 344 VRMGNKSISRVKGVGTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENG 403
Query: 372 RDILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGM 431
+LR+ G ++ +R +Y L G + +V +D T LWH RL H+S++ M
Sbjct: 404 --MLRIKSGNQVLLEGRR-YDTLYILHGKPATDESLAVARANDDTVLWHRRLCHMSQKNM 460
Query: 432 MELYKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPS 490
L K+ L + + C+ C+ G+ ++ F QH TK L+YVHSD+WG PT S
Sbjct: 461 SLLIKKGFLDKKKVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMS 520
Query: 491 VGGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
+G +YF++F DD++RKVWVYFLK K E F KF W + VENQ+G ++K
Sbjct: 521 LGNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVK 569
Score = 219 bits (559), Expect = 8e-57
Identities = 110/217 (50%), Positives = 144/217 (65%), Gaps = 2/217 (0%)
Query: 1299 AAKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKT 1358
AAKKILG+EI ++ A LWLSQ SY+ VL F+M ++ P TPL H K+ K
Sbjct: 1074 AAKKILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEEKL 1133
Query: 1359 ASEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLK 1418
++E E M+ + ++SAVG +MY M+ TRPDLA V +FMS+P K+HW VKW+LRY+K
Sbjct: 1134 STEEEYMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIK 1193
Query: 1419 GTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVA 1478
GT D + + R + GY D+DYA DLD RRS TG VFTL G I WKS +Q +VA
Sbjct: 1194 GTVDTRLCYKRNSDF--SICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVA 1251
Query: 1479 MSTTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQL 1515
S+TE EYM++ EAVKEA+WL GL+K G EQ V++
Sbjct: 1252 QSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEI 1288
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 309 bits (792), Expect = 7e-84
Identities = 173/468 (36%), Positives = 256/468 (53%), Gaps = 31/468 (6%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
MSK L N+++ KQ+LYS KM E ++ ++ F I+ DL + V + DED+ I+LL +L
Sbjct: 108 MSKALPNRIYPKQKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTAL 167
Query: 150 PGSYDHLVTTLTY--GKDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQDRGR 207
P ++D L TL Y GK +TLD +++ + SV++ EGL+VK D+
Sbjct: 168 PKAFDQLKDTLKYSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVK---DKNE 224
Query: 208 GKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNR---------------SGKSG 252
KGK GK K K K +K C++C + GH++ CPN+ SG G
Sbjct: 225 NKGKGEQKGKGKGKKGKSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKG 284
Query: 253 NSSSAANVVQSDGSCSEEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFGYV 312
N + AA S+ S E V D W+LD+GCS HMT REWF+ F G V
Sbjct: 285 NLAEAAGYYVSEALSSTE-------VHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSV 337
Query: 313 YLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENR 372
+G+ ++G+ +++ DG L+ VRY+P++ +NL+SLGT + GY F+SE+
Sbjct: 338 RMGNKTVSRVRGVGTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDG- 396
Query: 373 DILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMM 432
ILR+ G ++ +R +Y L V + +V D T LWH RL H+S++ M
Sbjct: 397 -ILRIKAGNQVLLTGRR-YDTLYLLNWKPVASESLAVVKRADDTVLWHQRLCHMSQKNME 454
Query: 433 ELYKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SV 491
L ++ L + ++ +C+ C+ GK R F H TK L+Y+HSD+WG P S+
Sbjct: 455 ILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSL 514
Query: 492 GGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
G +YF++ DDF+RKVWVYF+K K E F KF W VENQT R++K
Sbjct: 515 GKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVK 562
Score = 216 bits (551), Expect = 6e-56
Identities = 107/217 (49%), Positives = 142/217 (65%), Gaps = 2/217 (0%)
Query: 1299 AAKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKT 1358
AAKKILGMEI R++ LWLSQ Y+ +L ++M++A P TPL HFK K
Sbjct: 1067 AAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAATEQKL 1126
Query: 1359 ASEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLK 1418
+ + M + ++SAVG +MY M+ TRPDLA + +FMS+P K+HW VKW+LRY+K
Sbjct: 1127 IRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVLRYIK 1186
Query: 1419 GTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVA 1478
GT + + + +VGY D+DYA DLD RRS TG VFTL G I WKS +Q +VA
Sbjct: 1187 GTLKTRLCYKKSSSF--SIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVA 1244
Query: 1479 MSTTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQL 1515
STTE+EYM++ EAVKEA+WL GL+K G EQ V++
Sbjct: 1245 QSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEI 1281
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 308 bits (790), Expect = 1e-83
Identities = 176/466 (37%), Positives = 264/466 (55%), Gaps = 26/466 (5%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
M ++L ++++ + Y+ KMQE + ++ F I+ADL L + V DE + I+LL SL
Sbjct: 83 MIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSL 142
Query: 150 PGSYDHLVTTLTYG--KDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQDRGR 207
P YD LV T+ Y ++ + LD + ++ + R + + EG F +G D G+
Sbjct: 143 PARYDGLVETMKYSNSREKLRLDDV---MVAARDKERELSQNNRPVVEGHFARGRPD-GK 198
Query: 208 GKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDC-----PNRSGKSGNSSSAANVVQ 262
+ + RSKS D K C+ C + GH+K+ C N+S + G+ + +++ +
Sbjct: 199 NNNQGNKGKNRSRSKSADGKRV-CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAK 257
Query: 263 SDGS--------CSEEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYL 314
S + ++E L+ + + WVLD+GCS HMTP ++WF FK GYV +
Sbjct: 258 STEAFNPAMVLLATDETLVVTDSI--ANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKM 315
Query: 315 GDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENRDI 374
G+D +KG+ +KI DG L+ VRY+P +T+NLISLGTL + G FKS++ I
Sbjct: 316 GNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDG--I 373
Query: 375 LRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMMEL 434
L++ KG T+++ ++ +Y L G T G+ S D T LWH RLGH+S++GM L
Sbjct: 374 LKIVKGCSTILKGQK-RDTLYILDGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEIL 432
Query: 435 YKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGG 493
K+ L+ + C+ CV GKQ RV F QH TK L YVHSD+WG P S+G
Sbjct: 433 VKKGCLRREVIKELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGN 492
Query: 494 FRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
+YF++F DD+SRKVW+YFL+ K E F KF WK VENQ+ RK+K
Sbjct: 493 SQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVK 538
Score = 218 bits (556), Expect = 2e-56
Identities = 111/218 (50%), Positives = 145/218 (65%), Gaps = 2/218 (0%)
Query: 1300 AKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTA 1359
AKKILGMEI R++ A L LSQ YV+ VL F M A PVSTPL HFKL +
Sbjct: 1047 AKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYE 1106
Query: 1360 SEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKG 1419
+ E M + +A+ +G +MY M+ TRPDLA + + +FMSKP K HW+AVKW+LRY++G
Sbjct: 1107 EQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRG 1166
Query: 1420 TADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAM 1479
T + + F +++ L+ GY DSDY + D RRS TGYVFT+ G I WKS +Q +VA+
Sbjct: 1167 TEKKKLCFRKQEDF--LLRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAI 1224
Query: 1480 STTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQLLS 1517
S+TEAEYMA+ EAVKEALWL G +LG Q V++ S
Sbjct: 1225 SSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHS 1262
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 297 bits (760), Expect = 4e-80
Identities = 172/465 (36%), Positives = 261/465 (55%), Gaps = 43/465 (9%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
M+K+L N+++ KQRLY KM E ++ +V F +++DL + V V DED+ I+LL SL
Sbjct: 113 MAKSLPNRIYLKQRLYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSL 172
Query: 150 PGSYDHLVTTLTYGKDSITLDSISSTLLQHAQRRRSVEEGGG-----SSGEGLFVKGGQD 204
P +D L TL Y K ++ L+ I+S + R + +E G ++ +GLFV QD
Sbjct: 173 PRQFDQLKETLKYCKTTLHLEEITSAI-----RSKILELGASGKLLKNNSDGLFV---QD 224
Query: 205 RGRGKGKAVDSGKKK-RSKSKDRKTAECYSCKQIGHWKRDC-----PNRSGKSGNSSSAA 258
RGR + + K K RSKSK C+ C + GH+K+ C N+ G + A+
Sbjct: 225 RGRSETRGKGPNKNKSRSKSKGAGKT-CWICGKEGHFKKQCYVWKERNKQGSTSERGEAS 283
Query: 259 NVVQ--SDGSCSEEDLLCVSYVKCT-DAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYLG 315
V +D + + + + T D W+LD+GCS HMT ++W FK G V +G
Sbjct: 284 TVTARVTDAAALVVSRALLGFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMG 343
Query: 316 DDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENRDIL 375
+D +KG+ V+I +DG L+ VRY+PE++KNLISLGTL + G F+S+ + IL
Sbjct: 344 NDTYSEVKGIGDVRIKNEDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESK--KGIL 401
Query: 376 RVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMMELY 435
+ K +TV+ K+ + +Y L G+T+ G+ ++ + D T LWH RLGH+ +G+ L
Sbjct: 402 TIFKNDLTVLTGKKES-TLYFLQGTTLAGEANVIDKEKDETSLWHSRLGHIGAKGLQVLV 460
Query: 436 KRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGGF 494
+ L K + F +H TK LDYVHSD+WG T P S+G
Sbjct: 461 SKG----------------HLDKNIMISFGAAKHVTKDKLDYVHSDLWGSTNVPFSIGKC 504
Query: 495 RYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
+YF+TF DDF+R+ W+YF++ K E F+KF WK ++ENQ +K+K
Sbjct: 505 QYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQIENQQDKKLK 549
Score = 216 bits (550), Expect = 8e-56
Identities = 110/217 (50%), Positives = 144/217 (65%), Gaps = 2/217 (0%)
Query: 1300 AKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTA 1359
A+KILGMEI R + L LSQ+ YV GVL F M ++ TPL HFKL A
Sbjct: 1054 ARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLA 1113
Query: 1360 SEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKG 1419
+ E M + + +A+G +MY M+ +RPDLA V +FMSKP K+HW+AVKW++RY+KG
Sbjct: 1114 RDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKG 1173
Query: 1420 TADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAM 1479
T D + F ++ + GY DSDYA DLD RRS TG+VFT G I WKS +Q +VA+
Sbjct: 1174 TQDTCLRFKKDDKFE--IRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVAL 1231
Query: 1480 STTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQLL 1516
STTEAEYMA+AEAVKEA+WL GL ++G EQ V+++
Sbjct: 1232 STTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVM 1268
>At4g10460 putative retrotransposon
Length = 1230
Score = 291 bits (745), Expect = 2e-78
Identities = 172/468 (36%), Positives = 248/468 (52%), Gaps = 45/468 (9%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
MSK L N+++ KQ+LYS KMQE ++ ++ F ++ADL V V DED+ I+LL SL
Sbjct: 106 MSKALPNRIYLKQKLYSYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSL 165
Query: 150 PGSYDHLVTTLTYGKDSITLD------SISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQ 203
P +D L TL YG TL +I S L+ ++S+ EGL+VK
Sbjct: 166 PKQFDQLKDTLKYGSGRTTLSVDEVVAAIYSKELELGSNKKSIR----GQAEGLYVKDKP 221
Query: 204 DRGRGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRS-----GKSGNSSSAA 258
+ RG + + G K RS+S+ + C+ C + GH+K CPN+ GK S S
Sbjct: 222 ET-RGMSEQKEKGNKGRSRSRSKGWKGCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKG 280
Query: 259 NVVQSDGSCSE------EDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFGYV 312
G+ SE + L + V + WV+D+GC+ HMT +EWF G V
Sbjct: 281 EAATIKGNTSEGSGYYVSEALHSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSEDAGGTV 340
Query: 313 YLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENR 372
+G+ + V+Y+P++ +NL+S+GTL E+GYSF+S+
Sbjct: 341 RMGNKSTSKFR-------------------VKYIPDMDRNLLSMGTLEEHGYSFESKNG- 380
Query: 373 DILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMM 432
+L V +G T++ R +Y L G + +VE +D T LWH RLGH+S++ M
Sbjct: 381 -VLVVKEGTRTLLIGSRHE-KLYLLQGKPEVSHSMTVERRNDDTVLWHRRLGHISQKNMD 438
Query: 433 ELYKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SV 491
L K+ L G + + LC+ C+ GK R+ F H T+ L+YVHSD+WG P S+
Sbjct: 439 ILVKKGYLDGKKVSKLELCEDCIYGKARRLSFVVATHNTEDKLNYVHSDLWGAPSVPLSL 498
Query: 492 GGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
G +YF++F D +SRK WVYFLK+K E F F W VENQTGRKIK
Sbjct: 499 GKCQYFISFIDVYSRKTWVYFLKHKDEAFGTFAEWSVMVENQTGRKIK 546
Score = 147 bits (370), Expect = 6e-35
Identities = 85/217 (39%), Positives = 122/217 (56%), Gaps = 28/217 (12%)
Query: 1299 AAKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKT 1358
AAK+ILGMEI R++ L LSQ Y+ VL +++ + V TPL H K+ +
Sbjct: 967 AAKRILGMEISRDRVKGTLTLSQEDYLSKVLETYNVDQCKFVVTPLGAHLKMHAATEQQL 1026
Query: 1359 ASEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLK 1418
S+ E M + +++AVG +MY M+ TRPDLA + +FMSKP
Sbjct: 1027 LSDEEYMKSVPYSNAVGSIMYSMIDTRPDLAYCVGIISRFMSKP---------------- 1070
Query: 1419 GTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVA 1478
+G + GY DSDYA +L++RRS +G VFTL G I +S +Q +V
Sbjct: 1071 ------------KGADLTLRGYCDSDYAANLENRRSISGMVFTLGGSTINLRSCLQKVVV 1118
Query: 1479 MSTTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQL 1515
MS+T+A YM++ EAVKEA+WL GL++ G EQ V++
Sbjct: 1119 MSSTKAGYMSLTEAVKEAIWLKGLLQDFGYEQKTVEI 1155
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 281 bits (718), Expect = 3e-75
Identities = 175/466 (37%), Positives = 253/466 (53%), Gaps = 33/466 (7%)
Query: 82 LG*IGIMCMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDK 141
LG + + MSK L N+++ KQ+LYS KM E ++ ++ F I+ADL V V DED+
Sbjct: 100 LGVLDKLYMSKALPNRIYQKQKLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQ 159
Query: 142 TIILLCSLPGSYDHLVTTLTYGKDSITLD------SISSTLLQHAQRRRSVEEGGGSSGE 195
I+LL SLP +D L TL YG +TL +I S L+ ++S++ E
Sbjct: 160 AILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAAIYSKELELGSNKKSIK----GQAE 215
Query: 196 GLFVKGGQD-RGRGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRSGKSGNS 254
GLFVK + RGR + + ++ KK S+SK R C+ C G+S N
Sbjct: 216 GLFVKEKTETRGRTEQRGNNNNNKK-SRSKSRSKKGCWIC--------------GESSNG 260
Query: 255 SSAANVVQSDGSCSEEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYL 314
SS N +++G E L + D WV+D+GCS HMT REWF G V +
Sbjct: 261 SS--NYSEANGLYVSEALSSTD-IHLEDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRM 317
Query: 315 GDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENRDI 374
G+ ++G+ +++ + G V L+ VRY+PE+ +NL+SLGT ++GYSFK E
Sbjct: 318 GNKTVSKVRGIGTIRVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENG--T 375
Query: 375 LRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMMEL 434
L + G ++ +R +Y L V + SV D T LWH RLGH+S++ M L
Sbjct: 376 LSIIAGDSVLLTVRR-CYTLYLLQWRPVTEESLSVVKRQDDTILWHRRLGHMSQKNMDLL 434
Query: 435 YKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGG 493
K+ LL + + C+ C+ GK R+ F QH T+ L+YVHSD+WG P S+G
Sbjct: 435 LKKGLLDKKKVSKLETCEDCIYGKAKRIGFNLAQHDTREKLEYVHSDLWGAPSVPFSLGK 494
Query: 494 FRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
+YF++F DD++RKV +YFLK K E F KF W VENQT ++IK
Sbjct: 495 CQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQTDKRIK 540
Score = 207 bits (526), Expect = 5e-53
Identities = 102/217 (47%), Positives = 141/217 (64%), Gaps = 2/217 (0%)
Query: 1299 AAKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKT 1358
AAK+ILGMEI R + LWLSQN Y+ +L ++M+++ V TPL H K+ K
Sbjct: 1044 AAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQ 1103
Query: 1359 ASEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLK 1418
+ + M I ++SAVG +MY M+ TRPDLA + ++MS+P ++HW VKW+LRY+K
Sbjct: 1104 EQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIK 1163
Query: 1419 GTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVA 1478
G+ + + R VVGY D+D+A D RRS TG VFTL G I WKS Q +VA
Sbjct: 1164 GSLGTKLQYKRSSDF--KVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVA 1221
Query: 1479 MSTTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQL 1515
+STTEAEYM++ EAVKEA+W+ GL+K+ G EQ V++
Sbjct: 1222 LSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEI 1258
>At1g37110
Length = 1356
Score = 280 bits (716), Expect = 5e-75
Identities = 166/462 (35%), Positives = 246/462 (52%), Gaps = 28/462 (6%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
M +L N+++ + +LYS KM + +V F I+A+L L + VD+E + I++L SL
Sbjct: 116 METSLPNRIYTQLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSL 175
Query: 150 PGSYDHLVTTLTYGKDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGL----------FV 199
P S+ L TL YG ++T+ ++S+ + R E G+ V
Sbjct: 176 PASHIQLKHTLKYGNKTLTVQDVTSSA--KSLERELAEAVDLDKGQAAVLYTTERGRPLV 233
Query: 200 KGGQDRGRGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRSGK-SGNSSSAA 258
+ Q G+GKG RS+S + C+ CK+ GH K+DC +R K A
Sbjct: 234 RNNQKGGQGKG---------RSRSNSKTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEA 284
Query: 259 NVVQSDGSCSEEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDK 318
V+ SE L V+ D W+LDSGC+ HMT R+WF SF+ + LGDD
Sbjct: 285 GVITEKLVFSEA--LSVNEQMVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDH 342
Query: 319 PCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENRDILRVS 378
+G ++I G ++ L V+YVP + +NLIS GTL + GY + E + +R
Sbjct: 343 SVESQGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGK--VRYF 400
Query: 379 KGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMMELYKRN 438
K T +R + G +Y L GSTVM ++ + ETD T LWH RLGH+S + L +
Sbjct: 401 KNNKTALRGSLSNG-LYVLDGSTVMSELCNAETDKVKTALWHSRLGHMSMNNLKVLAGKG 459
Query: 439 LLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPSVGGFRYF 497
L+ + C++CV+GK +V F G+H ++ L YVH+D+WG P PS+ G +YF
Sbjct: 460 LIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYF 519
Query: 498 VTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
++ DD +RKVW+YFLK K E F KF WK+ VENQ +K+K
Sbjct: 520 LSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVK 561
Score = 213 bits (541), Expect = 9e-55
Identities = 104/216 (48%), Positives = 149/216 (68%), Gaps = 5/216 (2%)
Query: 1300 AKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTA 1359
A +ILG++I+R++ L LSQ Y+ VL RF+MS A + P+ HFKL+ +
Sbjct: 1070 ASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLA---AVREE 1126
Query: 1360 SEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKG 1419
E + ++SAVG +MY M+ TRPDLA A + ++MSKPG HWEAVKW++RYLKG
Sbjct: 1127 DECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKG 1186
Query: 1420 TADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAM 1479
D ++F++E+ V GY DS+YA DLD RRS +GYVFT+ G + WK+S+Q +VAM
Sbjct: 1187 AQDLNLVFTKEKDFT--VTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAM 1244
Query: 1480 STTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQL 1515
STTEAEY+A+AEA KEA+W+ GL++ +G++Q V++
Sbjct: 1245 STTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKI 1280
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 277 bits (708), Expect = 4e-74
Identities = 164/455 (36%), Positives = 254/455 (55%), Gaps = 34/455 (7%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
M+K+L N+++ KQRLY KM + ++ +V F +++DL + V+V DED+ I+LL SL
Sbjct: 105 MAKSLPNRIYLKQRLYGYKMSDSMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSL 164
Query: 150 PGSYDHLVTTLTYGKDSITLDSISSTLLQHAQRRRSVEEGGGS------SGEGLFVKGGQ 203
P +D L TL YGK ++ LD I+ + R V E G S S + LFV Q
Sbjct: 165 PKQFDQLKDTLKYGKTTLALDEITGAI------RSKVLELGASGKMLKNSSDALFV---Q 215
Query: 204 DRGRGKGKAVDSGKKK-RSKSKDRKTAECYSCKQIGHWKRDC-----PNRSGKSGNSSSA 257
DRGR + + S + K +S+SK R+ C+ C + GH+K+ C N+ G + +
Sbjct: 216 DRGRSEKRDKSSERNKSQSRSKSREKKVCWVCGKEGHFKKQCYVWKEKNKKGNNSEKGES 275
Query: 258 ANVVQSDGSCSEEDLLCVSYVKCTD------AWVLDSGCSCHMTPHREWFNSFKSCDFGY 311
+NV+ G ++ L V D W++D+GCS HMTP R+WF F G
Sbjct: 276 SNVI---GQAADAAALAVREESNADNQEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGR 332
Query: 312 VYLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEEN 371
V + + IKG+ ++I DD L VRYVP ++KNLIS+GTL + G F+S+
Sbjct: 333 VKMANQTYSEIKGIGSIRIQNDDNTTVLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAG 392
Query: 372 RDILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGM 431
L+V KG MT+++ K+ G +Y L G V G+ +V + D +K+WH RL H+S+R +
Sbjct: 393 --TLKVVKGCMTLLKGKK-VGTLYLLQGVVVTGNANAVTSSKDESKIWHSRLCHMSQRNI 449
Query: 432 MELYKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPS 490
L K+ L+ + + C+ CV GK RV F + +H T+ L+Y+HSD+WG P+ S
Sbjct: 450 DVLIKKGCLQAEKINGLEFCEDCVYGKTHRVGFGSAKHVTREKLEYIHSDLWGAPSVPNS 509
Query: 491 VGGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKL 525
+G +YF+TF DD +RK + K + ++F++
Sbjct: 510 LGNCQYFITFIDDLTRKNKETVKELKERLSSEFEM 544
Score = 204 bits (518), Expect = 4e-52
Identities = 103/216 (47%), Positives = 138/216 (63%), Gaps = 2/216 (0%)
Query: 1300 AKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTA 1359
A+KILGMEI R + L LSQ SY++ VL F M + PV TPLA H K +
Sbjct: 550 ARKILGMEITRNREENILELSQRSYLQKVLKTFRMDECKPVKTPLAPHMKFVAATETEAE 609
Query: 1360 SEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKG 1419
+ + M I +A+AVG +MY M+ +RPDLA + +FMSKP HW VKW+LRY+KG
Sbjct: 610 EQADQMKSIPYANAVGSIMYSMIGSRPDLAHPVGVISRFMSKPLMNHWLGVKWVLRYIKG 669
Query: 1420 TADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAM 1479
+ D + + RE V V GY DSD++GD D RSTTGY FT+ G + W+S +Q +VA+
Sbjct: 670 SIDSRLQYKREGDFV--VTGYCDSDHSGDRDRSRSTTGYTFTVGGNIVSWRSCLQPVVAL 727
Query: 1480 STTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQL 1515
S+TEAEY+A+ EA KEA WL L+ +LG +QG V +
Sbjct: 728 SSTEAEYIALTEAAKEAYWLKDLMNELGFKQGAVDI 763
>At4g21360 putative transposable element
Length = 1308
Score = 254 bits (649), Expect = 3e-67
Identities = 153/451 (33%), Positives = 231/451 (50%), Gaps = 17/451 (3%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
M +L N+++ + RLYS KM + + + F I+A+L L + V +E + I++L SL
Sbjct: 118 METSLPNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSL 177
Query: 150 PGSYDHLVTTLTYGKDSITL-DSISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQDRGRG 208
P SY L TL YG ++++ D +SS + E + L+ +RGR
Sbjct: 178 PPSYIQLKHTLKYGNKTLSVQDVVSSAKSLERELSEQKETIRAPASTALYTA---ERGRP 234
Query: 209 KGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRSGKSGNSSSAANVVQSDGSCS 268
+ K K R +S + C+ CK+ GH K+DC K N V ++
Sbjct: 235 QTKNTQGQGKGRGRSNSKSRLTCWFCKKEGHVKKDCYAGKRKLENEGQGKAGVITEKLVY 294
Query: 269 EEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDKPCIIKGM*QV 328
E L + D WV+DSGC+ HMT +WF+ F + + LGDD KG V
Sbjct: 295 SEALSMYDQ-EAKDKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKGSGTV 353
Query: 329 KIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAK 388
K+ G +R L VR+VP + +NLIS GTL + GY + + + +R K T +
Sbjct: 354 KVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGK--VRFYKENKTALCGN 411
Query: 389 RTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMMELYKRNLLKGVRSCTI 448
G +Y L G TV+ + +VE ++ T+LWH RLGH+S M L ++ LL+ +
Sbjct: 412 LVNG-LYVLDGHTVVNENCNVEGSNEKTELWHCRLGHMSLNNMKILAEKGLLEKKDIKEL 470
Query: 449 GLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFVTFTDDFSRKV 508
C+ CV+GK ++ F G+H T +L Y+H+D+WG +YF++ DD SRKV
Sbjct: 471 SFCENCVMGKSKKLSFNVGKHITDEVLGYIHADLWGK---------QYFLSIIDDKSRKV 521
Query: 509 WVYFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
W+ FLK K E F +F WK VENQ +K+K
Sbjct: 522 WLMFLKTKDETFERFCEWKELVENQVNKKVK 552
Score = 151 bits (382), Expect = 3e-36
Identities = 86/213 (40%), Positives = 126/213 (58%), Gaps = 36/213 (16%)
Query: 1299 AAKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLS--LEQCP 1356
AA +ILG++I R + L LSQ YV+ V+ RF M+ A VSTP+ HFKL+ +++
Sbjct: 1050 AASRILGIDIIRNRKEGTLRLSQTRYVDKVIQRFRMADAKVVSTPMGAHFKLTSLIDEIG 1109
Query: 1357 KTASEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRY 1416
E+ + ++SAVG +MY M+ T PD+A A V +FMS+PG
Sbjct: 1110 SVDPEV-----VPYSSAVGSVMYAMIGTIPDVAYAMGLVSRFMSRPGANLE--------- 1155
Query: 1417 LKGTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSI 1476
V GY DSD+A DLD RRS +GYVFT+ G + WKSS+Q +
Sbjct: 1156 --------------------VQGYCDSDHAADLDKRRSISGYVFTVGGNTVSWKSSLQHV 1195
Query: 1477 VAMSTTEAEYMAVAEAVKEALWLTGLVKKLGVE 1509
VA+S+T+AE++A+ EAVKEA+W+ GL++ +G++
Sbjct: 1196 VALSSTQAEFIALTEAVKEAIWIRGLLEDMGLQ 1228
>At1g47360 polyprotein, putative
Length = 1182
Score = 253 bits (647), Expect = 5e-67
Identities = 156/438 (35%), Positives = 237/438 (53%), Gaps = 34/438 (7%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
M ++L ++++ + Y+ KMQE + ++ F I+ADL L + V DE + I+LL SL
Sbjct: 73 MIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIEVTDEVQAILLLSSL 132
Query: 150 PGSYDHLVTTLTYG--KDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQDRGR 207
P YD LV T+ Y ++ + LD + ++ + R + + EG + RGR
Sbjct: 133 PARYDGLVETMKYSNSREKLRLDDV---MVGARDKERELSQNNRPVAEGHYA-----RGR 184
Query: 208 GKGKAVDSGKK----KRSKSKDRKTAECYSCKQIGHWKRDC-----PNRSGKSGNSSSAA 258
+GK + G K RSKS D K C+ C + GH+K+ C N+S + G+ +
Sbjct: 185 PEGKNNNQGNKGKNRSRSKSADGKRV-CWICGKEGHFKKQCYKWLERNKSKQQGSDVGES 243
Query: 259 NVVQSDG--------SCSEEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFG 310
++ +S + E LL + D W LD+GCS HMTP R+ F FK G
Sbjct: 244 SLAKSSEIFDPAMVIMATGETLLVTG--RDADEWFLDTGCSFHMTPRRDLFKDFKELSSG 301
Query: 311 YVYLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEE 370
+V +G+D +KG+ +KI +DG L+ VRYVP + +NLISLGTL + G FKS++
Sbjct: 302 FVKMGNDTYSPVKGIGSIKIRNNDGTQVILTDVRYVPNMARNLISLGTLEDKGCWFKSQD 361
Query: 371 NRDILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERG 430
+L++ KG T+++ ++ +Y L G G+ S D T LWH RLGH+S++G
Sbjct: 362 G--VLKIVKGCSTILKGQKRE-TLYILEGLAENGESHSSAELKDETSLWHSRLGHMSQKG 418
Query: 431 MMELYKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP- 489
M L K++ L+ + C+ CV GK RV F QH TK L Y+HSD+WG P
Sbjct: 419 MEILVKKDCLQRETIKELKFCEDCVYGKNHRVSFAPAQHVTKEKLAYIHSDLWGSPHNPA 478
Query: 490 SVGGFRYFVTFTDDFSRK 507
S+G +YF++F DD+SRK
Sbjct: 479 SLGNCQYFISFVDDYSRK 496
Score = 188 bits (477), Expect = 2e-47
Identities = 92/195 (47%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
Query: 1321 QNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTASEIEGMSKISHASAVGCLMYV 1380
+ +YV+ VL M ++ PVSTP+ HFKL + ++ E M + +A+ VG +MY
Sbjct: 915 KEAYVKKVLRSTHMDQSKPVSTPIGVHFKLRAATEEEYKNQFERMRFVPYANTVGSIMYS 974
Query: 1381 MVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADRGIMFSREQGVVPLVVGY 1440
M+ TRPDLA + +FMSKP K HW+A KW+LRY+KGT + + + ++ L+ GY
Sbjct: 975 MIGTRPDLAYPLDVISRFMSKPLKDHWQAAKWVLRYMKGTETKKLCYMKQDDF--LLRGY 1032
Query: 1441 VDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEAVKEALWLT 1500
DSDY + D RRS +GYVFT+ G I WKS +Q +VA+STTE+EYMA+ EAVKEALWL
Sbjct: 1033 CDSDYGSNFDTRRSISGYVFTIGGNTIIWKSKLQKVVALSTTESEYMALTEAVKEALWLK 1092
Query: 1501 GLVKKLGVEQGGVQL 1515
GL +LG Q V++
Sbjct: 1093 GLANELGFPQKDVEV 1107
>At3g60170 putative protein
Length = 1339
Score = 203 bits (517), Expect = 6e-52
Identities = 141/455 (30%), Positives = 220/455 (47%), Gaps = 50/455 (10%)
Query: 107 LKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSLPGSYDHLVTTLTYGKD- 165
L M+EG + + ++ + G ++ +L SL ++++V ++ D
Sbjct: 125 LAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDL 184
Query: 166 -SITLDSISSTLLQHAQRRRS------------VEEGGGSSGEGLFVKGGQDRGRGKGKA 212
++++D + +LL H QR E G G+F +G + RGRG+G++
Sbjct: 185 STLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVF-RGSRGRGRGRGRS 243
Query: 213 VDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRSGKSGNSSSAANVVQSDGSCSEEDL 272
+R ECY C +GH++ +CP AN + + EE+L
Sbjct: 244 ----------GTNRAIVECYKCHNLGHFQYECPEWEKN-------ANYAELE---EEEEL 283
Query: 273 LCVSYVKCTDA-----WVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDKPCIIKGM*Q 327
L ++YV+ A W LDSGCS HMT +EWF+ + V LG+D + G
Sbjct: 284 LLMAYVEQNQANRDEVWFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRMSVVGKGS 343
Query: 328 VKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENR-DILRVSKGAMTVMR 386
VK+ ++ G + + +V YVPE+ NL+SLG L E G + + + SKGA +M
Sbjct: 344 VKVKVN-GVTQVIPEVYYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGA--IME 400
Query: 387 AKRTAGNIYKLLGSTVMGDVASVETD---DDATKLWHMRLGHLSERGMMELYKRNLLKG- 442
+ ++ LL S + ++T+ D LWH R GHL++ G+ L + ++ G
Sbjct: 401 TNMSGNRMFFLLASKPQKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGL 460
Query: 443 -VRSCTIGLCKYCVLGKQCRVRF-KTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFVTF 500
+ T +C C+ GKQ R K K+ L VHSD+ GP S G RY ++F
Sbjct: 461 PILKATKEICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSF 520
Query: 501 TDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTG 535
DDF+RK WVYFL KSE FA FK++KA VE + G
Sbjct: 521 IDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIG 555
Score = 164 bits (414), Expect = 5e-40
Identities = 88/217 (40%), Positives = 128/217 (58%), Gaps = 9/217 (4%)
Query: 1301 KKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTAS 1360
K LG+E+ + G +++ Q Y VL+RF M ++N V P+ KL+ ++
Sbjct: 1054 KHFLGIEVKQSDGG--IFICQRRYAREVLARFGMDESNAVKNPIVPGTKLTKDE------ 1105
Query: 1361 EIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGT 1420
E + + VG LMY+ V TRPDL + +FMS P HW A K ILRYLKGT
Sbjct: 1106 NGEKVDETMFKQLVGSLMYLTV-TRPDLMYGVCLISRFMSNPRMSHWLAAKRILRYLKGT 1164
Query: 1421 ADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMS 1480
+ GI + R + ++ + DSDYAGDL+DRRST+G+VF +A G ICW S Q +VA+S
Sbjct: 1165 VELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMASGAICWASKKQPVVALS 1224
Query: 1481 TTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQLLS 1517
TTEAEY+A A + +WL +++KLG E+ +++
Sbjct: 1225 TTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVIN 1261
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 202 bits (514), Expect = 1e-51
Identities = 138/454 (30%), Positives = 223/454 (48%), Gaps = 37/454 (8%)
Query: 107 LKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSLPGSYDHLVTTLTYGKD- 165
L+M+ G + + I D+ LG + D +L +L + ++V + +
Sbjct: 82 LEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNI 141
Query: 166 -SITLDSISSTLLQHAQR--RRSVEEGGGSSGEGLFVKGGQDRG----RGKGKAVDSGKK 218
+T+D + S+L+ H Q R VEE + GG+ RG RG+G+ G+
Sbjct: 142 KELTVDGLQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQGRG 201
Query: 219 KRSKSKDRKTAECYSCKQIGHWKRDCPNRSGKSGNSSSAANVVQSDGSCSEEDLLCVSYV 278
+ ++D T EC+ C ++GH+K +CP+ + AN V+ EEDLL +++V
Sbjct: 202 RGYVNRD--TVECFKCHKMGHYKAECPSWEKE-------ANYVEM-----EEDLLLMAHV 247
Query: 279 KCT-----DAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDKPCIIKGM*QVKIALD 333
+ W LDSGCS HM REWF S V LGDD+ ++G ++++ +D
Sbjct: 248 EQIGDEEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEVD 307
Query: 334 DGGVRTLSQVRYVPEVTKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGN 393
G ++ +S V +VP + NL S+G L + G F E + + VM + T
Sbjct: 308 -GRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNR 366
Query: 394 IYKLLGSTVMG----DVASVETDDDATKLWHMRLGHLSERGMMELYKRNLLKGVRSCTIG 449
++ + + + ++ A +WH R GHL+ +G+ L ++ ++KG+ +G
Sbjct: 367 MFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLG 426
Query: 450 ----LCKYCVLGKQCRVRF-KTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFVTFTDDF 504
+C C+ GKQ R K K+ +L VH+D+ GP S G RY + F DDF
Sbjct: 427 EEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDF 486
Query: 505 SRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKI 538
SRK W Y L KSE F FK +KAEVE ++G+K+
Sbjct: 487 SRKCWTYLLSEKSETFQFFKEFKAEVERESGKKL 520
Score = 125 bits (315), Expect = 1e-28
Identities = 73/216 (33%), Positives = 114/216 (51%), Gaps = 43/216 (19%)
Query: 1301 KKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTAS 1360
K LG+E+ +++ + ++++Q Y ++ ++ M N V P+ KL+
Sbjct: 1014 KYFLGVEVIQDE--RGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLT--------- 1062
Query: 1361 EIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGT 1420
A V ++M P +QH AVK ILRY++GT
Sbjct: 1063 ------------------------------KAGAVSRYMESPNEQHLLAVKRILRYVQGT 1092
Query: 1421 ADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMS 1480
D GI + E+G +VG+VDSDYAGD+DDR+ST+GYVF L GG I W S Q IV +S
Sbjct: 1093 LDLGIQY--ERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLS 1150
Query: 1481 TTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQLL 1516
TTEAE+++ + +A+WL +++++G Q G L+
Sbjct: 1151 TTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLV 1186
>At1g48710 hypothetical protein
Length = 1352
Score = 196 bits (499), Expect = 7e-50
Identities = 143/481 (29%), Positives = 235/481 (48%), Gaps = 58/481 (12%)
Query: 106 SLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSLPGSYDHLVTTLTYGKD 165
+L+M+EG + + + +L R G +DD +L SL ++H+VT + KD
Sbjct: 122 ALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKD 181
Query: 166 --SITLDSISSTLLQHAQRRRSVEE-----------------------GGGSSGEGLFVK 200
++T++ + +L + ++++ E+ GG G G +
Sbjct: 182 LEAMTIEQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRG---R 238
Query: 201 GGQDRGRG----------KGKAVDSGKKK-RSKSK-DRKTAECYSCKQIGHWKRDCPNRS 248
GG GRG +G+ G+ K KS+ D+ + +CY+C + GH+ +C S
Sbjct: 239 GGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPS 298
Query: 249 GKSGNSSSAANVVQSDGSCSEEDLLCVSYVKCTDA-----WVLDSGCSCHMTPHREWFNS 303
K AN V+ EED+L ++ K + W LDSG S HM + F
Sbjct: 299 NKKFEEK--ANYVEE--KIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAE 354
Query: 304 FKSCDFGYVYLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENG 363
G V LGD+ +KG + I L +G + +S V Y+P + N++SLG L E G
Sbjct: 355 LDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKG 414
Query: 364 YSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASV--ETDDDATKLWHM 421
Y + ++N +R + + + + + ++ L + D+A + + LWH+
Sbjct: 415 YDIRLKDNNLSIRDQESNL-ITKVPMSKNRMFVL---NIRNDIAQCLKMCYKEESWLWHL 470
Query: 422 RLGHLSERGMMELYKRNLLKGVRSCTIG--LCKYCVLGKQCRVRF-KTGQHKTKGILDYV 478
R GHL+ G+ L ++ +++G+ +C+ C+LGKQ ++ F K + + L+ +
Sbjct: 471 RFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELI 530
Query: 479 HSDVWGPTKEPSVGGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKI 538
H+DV GP K S+G YF+ F DDFSRK WVYFLK KSEVF FK +KA VE ++G I
Sbjct: 531 HTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVI 590
Query: 539 K 539
K
Sbjct: 591 K 591
Score = 149 bits (376), Expect = 1e-35
Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 11/207 (5%)
Query: 1304 LGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTASEIE 1363
LG+E+ +E ++++Q Y + VL +F M +NPV TP+ KLS ++ E E
Sbjct: 1068 LGIEVKQEDNG--IFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKE------EGE 1119
Query: 1364 GMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADR 1423
G+ + S VG L Y + CTRPD+ A V ++M P H++A K ILRY+KGT +
Sbjct: 1120 GVDPTTFKSLVGSLRY-LTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNF 1178
Query: 1424 GIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTE 1483
G+ +S +VGY DSD+ GD+DDR+ST+G+VF + W S Q IV +ST E
Sbjct: 1179 GLHYSTTSDYK--LVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCE 1236
Query: 1484 AEYMAVAEAVKEALWLTGLVKKLGVEQ 1510
AEY+A V A+WL L+K+L + Q
Sbjct: 1237 AEYVAATSCVCHAIWLRNLLKELSLPQ 1263
>At1g58140 hypothetical protein
Length = 1320
Score = 196 bits (498), Expect = 9e-50
Identities = 143/481 (29%), Positives = 235/481 (48%), Gaps = 58/481 (12%)
Query: 106 SLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSLPGSYDHLVTTLTYGKD 165
+L+M+EG + + + +L R G +DD +L SL ++H+VT + KD
Sbjct: 122 ALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKD 181
Query: 166 --SITLDSISSTLLQHAQRRRSVEE-----------------------GGGSSGEGLFVK 200
++T++ + +L + ++++ E+ GG G G +
Sbjct: 182 LEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRG---R 238
Query: 201 GGQDRGRG----------KGKAVDSGKKK-RSKSK-DRKTAECYSCKQIGHWKRDCPNRS 248
GG GRG +G+ G+ K KS+ D+ + +CY+C + GH+ +C S
Sbjct: 239 GGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPS 298
Query: 249 GKSGNSSSAANVVQSDGSCSEEDLLCVSYVKCTDA-----WVLDSGCSCHMTPHREWFNS 303
K AN V+ EED+L ++ K + W LDSG S HM + F
Sbjct: 299 NKKFEEK--ANYVEE--KIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAE 354
Query: 304 FKSCDFGYVYLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENG 363
G V LGD+ +KG + I L +G + +S V Y+P + N++SLG L E G
Sbjct: 355 LDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKG 414
Query: 364 YSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASV--ETDDDATKLWHM 421
Y + ++N +R + + + + + ++ L + D+A + + LWH+
Sbjct: 415 YDIRLKDNNLSIRDQESNL-ITKVPMSKNRMFVL---NIRNDIAQCLKMCYKEESWLWHL 470
Query: 422 RLGHLSERGMMELYKRNLLKGVRSCTIG--LCKYCVLGKQCRVRF-KTGQHKTKGILDYV 478
R GHL+ G+ L ++ +++G+ +C+ C+LGKQ ++ F K + + L+ +
Sbjct: 471 RFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELI 530
Query: 479 HSDVWGPTKEPSVGGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKI 538
H+DV GP K S+G YF+ F DDFSRK WVYFLK KSEVF FK +KA VE ++G I
Sbjct: 531 HTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVI 590
Query: 539 K 539
K
Sbjct: 591 K 591
Score = 149 bits (376), Expect = 1e-35
Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 11/207 (5%)
Query: 1304 LGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTASEIE 1363
LG+E+ +E ++++Q Y + VL +F M +NPV TP+ KLS ++ E E
Sbjct: 1036 LGIEVKQEDNG--IFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKE------EGE 1087
Query: 1364 GMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADR 1423
G+ + S VG L Y + CTRPD+ A V ++M P H++A K ILRY+KGT +
Sbjct: 1088 GVDPTTFKSLVGSLRY-LTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNF 1146
Query: 1424 GIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTE 1483
G+ +S +VGY DSD+ GD+DDR+ST+G+VF + W S Q IV +ST E
Sbjct: 1147 GLHYSTTSDYK--LVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCE 1204
Query: 1484 AEYMAVAEAVKEALWLTGLVKKLGVEQ 1510
AEY+A V A+WL L+K+L + Q
Sbjct: 1205 AEYVAATSCVCHAIWLRNLLKELSLPQ 1231
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 195 bits (496), Expect = 2e-49
Identities = 143/481 (29%), Positives = 234/481 (47%), Gaps = 58/481 (12%)
Query: 106 SLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSLPGSYDHLVTTLTYGKD 165
+L+M+EG + + + +L R G +DD +L SL ++H+VT + KD
Sbjct: 122 ALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKD 181
Query: 166 --SITLDSISSTLLQHAQRRRSVEE-----------------------GGGSSGEGLFVK 200
++T++ + +L + ++++ E+ GG G G +
Sbjct: 182 LEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRG---R 238
Query: 201 GGQDRGRG----------KGKAVDSGKKK-RSKSK-DRKTAECYSCKQIGHWKRDCPNRS 248
GG GRG +G+ G+ K KS+ D+ + +CY+C + GH+ +C S
Sbjct: 239 GGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPS 298
Query: 249 GKSGNSSSAANVVQSDGSCSEEDLLCVSYVKCTDA-----WVLDSGCSCHMTPHREWFNS 303
K AN V+ EED+L ++ K + W LDSG S HM + F
Sbjct: 299 NKKFKEK--ANYVEE--KIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAE 354
Query: 304 FKSCDFGYVYLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENG 363
G V LGD+ +KG + I L +G + +S V Y+P + N++SLG L E G
Sbjct: 355 LDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKG 414
Query: 364 YSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASV--ETDDDATKLWHM 421
Y + ++N +R K + + + + ++ L + D+A + + LWH+
Sbjct: 415 YDIRLKDNNLSIR-DKESNLITKVPMSKNRMFVL---NIRNDIAQCLKMCYKEESWLWHL 470
Query: 422 RLGHLSERGMMELYKRNLLKGVRSCTIG--LCKYCVLGKQCRVRF-KTGQHKTKGILDYV 478
R GHL+ G+ L ++ +++G+ +C+ C+LG Q ++ F K + + L+ +
Sbjct: 471 RFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELI 530
Query: 479 HSDVWGPTKEPSVGGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKI 538
H+DV GP K S+G YF+ F DDFSRK WVYFLK KSEVF FK +KA VE ++G I
Sbjct: 531 HTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVI 590
Query: 539 K 539
K
Sbjct: 591 K 591
Score = 59.7 bits (143), Expect = 1e-08
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 35/125 (28%)
Query: 1304 LGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTASEIE 1363
LG+E+ +E ++++Q Y + VL +F M +NP
Sbjct: 1068 LGIEVKQEDNG--IFITQEGYAKEVLKKFKMDDSNP------------------------ 1101
Query: 1364 GMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADR 1423
S VG L Y + CTRPD+ A V ++M P H++A K ILRY+KGT +
Sbjct: 1102 --------SLVGSLRY-LTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNF 1152
Query: 1424 GIMFS 1428
G+ +S
Sbjct: 1153 GLHYS 1157
>At3g61330 copia-type polyprotein
Length = 1352
Score = 194 bits (493), Expect = 3e-49
Identities = 142/481 (29%), Positives = 235/481 (48%), Gaps = 58/481 (12%)
Query: 106 SLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSLPGSYDHLVTTLTYGKD 165
+L+M+EG + + + +L R G +DD +L SL ++H+VT + KD
Sbjct: 122 ALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKD 181
Query: 166 --SITLDSISSTLLQHAQRRRSVEE-----------------------GGGSSGEGLFVK 200
++T++ + +L + ++++ E+ GG G G +
Sbjct: 182 LEAMTIEQLLGSLQAYEEKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRG---R 238
Query: 201 GGQDRGRG----------KGKAVDSGKKK-RSKSK-DRKTAECYSCKQIGHWKRDCPNRS 248
GG GRG +G+ G+ K KS+ D+ + +CY+C + GH+ +C S
Sbjct: 239 GGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPS 298
Query: 249 GKSGNSSSAANVVQSDGSCSEEDLLCVSYVKCTDA-----WVLDSGCSCHMTPHREWFNS 303
K A+ V+ EED+L ++ K + W LDSG S HM + F
Sbjct: 299 NKKFEEK--AHYVEE--KIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAE 354
Query: 304 FKSCDFGYVYLGDDKPCIIKGM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENG 363
G V LGD+ +KG + I L +G + +S V Y+P + N++SLG L E G
Sbjct: 355 LDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKG 414
Query: 364 YSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGSTVMGDVASV--ETDDDATKLWHM 421
Y + ++N +R + + + + + ++ L + D+A + + LWH+
Sbjct: 415 YDIRLKDNNLSIRDQESNL-ITKVPMSKNRMFVL---NIRNDIAQCLKMCYKEESWLWHL 470
Query: 422 RLGHLSERGMMELYKRNLLKGVRSCTIG--LCKYCVLGKQCRVRF-KTGQHKTKGILDYV 478
R GHL+ G+ L ++ +++G+ +C+ C+LGKQ ++ F K + + L+ +
Sbjct: 471 RFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELI 530
Query: 479 HSDVWGPTKEPSVGGFRYFVTFTDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKI 538
H+DV GP K S+G YF+ F DDFSRK WVYFLK KSEVF FK +KA VE ++G I
Sbjct: 531 HTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVI 590
Query: 539 K 539
K
Sbjct: 591 K 591
Score = 147 bits (372), Expect = 4e-35
Identities = 82/207 (39%), Positives = 121/207 (57%), Gaps = 11/207 (5%)
Query: 1304 LGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTASEIE 1363
LG+E+ +E ++++Q Y + VL +F + +NPV TP+ KLS ++ E E
Sbjct: 1068 LGIEVKQEDNG--IFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKE------EGE 1119
Query: 1364 GMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKGTADR 1423
G+ + S VG L Y + CTRPD+ A V ++M P H++A K ILRY+KGT +
Sbjct: 1120 GVDPTTFKSLVGSLRY-LTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNF 1178
Query: 1424 GIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAMSTTE 1483
G+ +S +VGY DSD+ GD+DDR+ST+G+VF + W S Q IV +ST E
Sbjct: 1179 GLHYSTTSDYK--LVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCE 1236
Query: 1484 AEYMAVAEAVKEALWLTGLVKKLGVEQ 1510
AEY+A V A+WL L+K+L + Q
Sbjct: 1237 AEYVAATSCVCHAIWLRNLLKELSLPQ 1263
>At4g04380 putative polyprotein
Length = 778
Score = 187 bits (476), Expect = 3e-47
Identities = 101/259 (38%), Positives = 148/259 (56%), Gaps = 4/259 (1%)
Query: 282 DAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDKPCIIKGM*QVKIALDDGGVRTLS 341
D W++D+GCS HMT REW F V +G+ +KG+ V+IA D+G TL
Sbjct: 197 DEWIMDTGCSYHMTHKREWLEDFDEEAGCSVRMGNKTISRVKGVGTVRIANDNGLTVTLQ 256
Query: 342 QVRYVPEVTKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGST 401
VRY+ ++ + +SLGT + G F+SE D+LRV+ G ++ +R +Y L G
Sbjct: 257 NVRYISDMDRIFLSLGTFEKAGRKFESEN--DMLRVNAGEQVLLEGRRY-DTLYILHGKP 313
Query: 402 VMGDVASVETDDDATKLWHMRLGHLSERGMMELYKRNLLKGVRSCTIGLCKYCVLGKQCR 461
+ +V +D LWH RL H+S++ M L K+ L + + C+ C+ GK +
Sbjct: 314 ATDESLAVAKANDDIVLWHRRLCHMSQKNMSLLVKKGFLDKKKVSMLDTCEDCIYGKAKK 373
Query: 462 VRFKTGQHKTKGILDYVHSDVWG-PTKEPSVGGFRYFVTFTDDFSRKVWVYFLKYKSEVF 520
+ F QH TK L+YVH D+WG PT ++G +YF++F DD +RKV VYFLK K E F
Sbjct: 374 IGFNFAQHDTKEKLEYVHYDLWGAPTMPMALGNCQYFISFIDDHTRKVCVYFLKTKDEAF 433
Query: 521 AKFKLWKAEVENQTGRKIK 539
KF W + VENQ+G ++K
Sbjct: 434 EKFVSWISLVENQSGNRVK 452
Score = 80.9 bits (198), Expect = 5e-15
Identities = 47/112 (41%), Positives = 69/112 (60%), Gaps = 6/112 (5%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
MSK L N+++ KQ+LY KM E ++ ++ F +I+ADL L V V DED+TI+LL SL
Sbjct: 77 MSKALPNQIYLKQKLYRFKMSENLSMEGNIDEFLHIVADLENLNVLVSDEDQTILLLMSL 136
Query: 150 PGSYDHLVTTLTY--GKDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGLFV 199
P S+D L TL Y GK +TLD +++ + SV++ S +G+FV
Sbjct: 137 PKSFDQLKDTLQYSSGKTVLTLDEVTAAIYSKELEFGSVKK----SIKGMFV 184
>At2g15700 copia-like retroelement pol polyprotein
Length = 1166
Score = 184 bits (468), Expect = 3e-46
Identities = 92/179 (51%), Positives = 120/179 (66%), Gaps = 2/179 (1%)
Query: 1337 ANPVSTPLANHFKLSLEQCPKTASEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVC 1396
+ PV TP A HFK + +E M +I +A+ VG LMY MV +RPDLA +
Sbjct: 954 SRPVITPTAAHFKFRSLSEEEKKTEAVHMERIPYANVVGSLMYAMVGSRPDLAFVVGFIS 1013
Query: 1397 KFMSKPGKQHWEAVKWILRYLKGTADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTT 1456
+FMS PG++HW AVKW+LRYLKG + ++F ++ + G+ DSDYA DLD RRS T
Sbjct: 1014 RFMSSPGREHWSAVKWVLRYLKGAYTQNLIFKKDSKFC--IEGFSDSDYATDLDRRRSVT 1071
Query: 1457 GYVFTLAGGPICWKSSVQSIVAMSTTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQL 1515
GYVF + G I WKSS+QS+VA+STTEAEYMA+ EAVKEA+WL GL +LG +Q V +
Sbjct: 1072 GYVFKVGGNTISWKSSLQSVVALSTTEAEYMALTEAVKEAIWLKGLCSELGFKQDNVMV 1130
Score = 113 bits (282), Expect = 1e-24
Identities = 60/138 (43%), Positives = 78/138 (56%), Gaps = 16/138 (11%)
Query: 403 MGDVASVETDDDATKLWHMRLGHLSERGMMELYKRNLLKGVRSCTIGLCKYCVLGKQCRV 462
+G + + DD L ++RLGH+S + M L + L G + C+ CVLGK +
Sbjct: 325 IGKIKILNPDDYVVILTNVRLGHMSLKNMNVLVEEGYLSGKEVDKLEFCESCVLGKSHKQ 384
Query: 463 RFKTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFVTFTDDFSRKVWVYFLKYKSEVFAK 522
F T +H TK S+GG RYFV+F DDFS+KVWVYFLK K E + K
Sbjct: 385 SFPTAKHTTK----------------ESLGGCRYFVSFIDDFSKKVWVYFLKTKDEAYHK 428
Query: 523 FKLWKAEVENQTGRKIKY 540
F+ WK VENQTG+KIKY
Sbjct: 429 FREWKQAVENQTGKKIKY 446
Score = 71.6 bits (174), Expect = 3e-12
Identities = 72/281 (25%), Positives = 119/281 (41%), Gaps = 42/281 (14%)
Query: 90 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSL 149
M +L N+++ + + Y+ KM + + +V F ++ DL +GV V +E + I+LL SL
Sbjct: 117 METSLPNRIYLQLKFYTYKMTDSRSIDGNVDDFLKLVTDLNNIGVDVTEEVQAILLLSSL 176
Query: 150 PGSYDHLVTTLTYGKDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQDRGRG- 208
YD R+ + ++ S EGL+V+ D+ RG
Sbjct: 177 ---YD---------------------------RKENSQKVESSQSEGLYVEQEADQRRGL 206
Query: 209 -KGKAVDSGKKKRSKSKDRKTAECYSCKQI--GHWKRDCPNRSGKSG--NSSSAANVVQS 263
K KA R+K+ + ++ K+D S SS+AN+
Sbjct: 207 KKEKANHGEDVLRAKADQNQGQSTIKTTRVVSSVVKKDIGRGSVLKSLHKPSSSANIATE 266
Query: 264 DGSCSEEDLLCVSYVKCTDAWVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDKPCIIK 323
+ +L S + WV+DSGCS H+T ++ + D G V +G+ +K
Sbjct: 267 P---KQPLVLTASPQDTKEEWVMDSGCSFHITLDKDSLFDLQEFDGGKVLMGNMTHSEVK 323
Query: 324 GM*QVKIALDDGGVRTLSQVRYVPEVTKNLISLGTLHENGY 364
G+ ++KI D V L+ VR KN + L E GY
Sbjct: 324 GIGKIKILNPDDYVVILTNVRLGHMSLKN---MNVLVEEGY 361
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 183 bits (465), Expect = 6e-46
Identities = 99/216 (45%), Positives = 133/216 (60%), Gaps = 18/216 (8%)
Query: 1300 AKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTA 1359
AKKILGMEI R++ A + +SQ Y+ VL F M +A PV TP+ HFKL +
Sbjct: 865 AKKILGMEIVRDRKAGTMSISQEGYLLKVLGNFGMDQAKPVFTPMGAHFKLKPATDEEVM 924
Query: 1360 SEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKG 1419
+ E M + + SAVG LMY M+ TRPDLA + VC+FMSKP K+HW+AVKWILRY++G
Sbjct: 925 RQSEVMRAVPYQSAVGSLMYSMIGTRPDLAHSVGLVCRFMSKPLKEHWQAVKWILRYIRG 984
Query: 1420 TADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAM 1479
+ DR + + E ++ + GY DSDYA D + RRST+G +VA+
Sbjct: 985 SIDRKLCYKNEGELI--LEGYCDSDYAADKEGRRSTSGV----------------KVVAL 1026
Query: 1480 STTEAEYMAVAEAVKEALWLTGLVKKLGVEQGGVQL 1515
S+TEAEYMA+ + KEA+WL G V +LG Q V +
Sbjct: 1027 SSTEAEYMALTDGAKEAIWLKGHVSELGFVQKTVNI 1062
Score = 122 bits (306), Expect = 2e-27
Identities = 78/253 (30%), Positives = 124/253 (48%), Gaps = 24/253 (9%)
Query: 92 KTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLGVTVDDEDKTIILLCSLPG 151
K+L N+++ + ++Y+ +MQ+ L+ +V F +++DL L + V DE + I++L +LP
Sbjct: 80 KSLPNRVYLQLKVYNYRMQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPD 139
Query: 152 SYDHLVTTLTYGKDSITLDSISSTLLQHAQRRRSVEEGGGSSGEGLFVKGGQDRGRGKGK 211
SYD L TL YG++ I LD + S R G GEGL+V+G G
Sbjct: 140 SYDMLKETLKYGREGIKLDDVISAAKSKELELRDSSGGSRPVGEGLYVRGKSQARGSDGP 199
Query: 212 AVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRSGKS-GNSSSAANVVQSDGSCSEE 270
GKK C+ C + GH+KR C K+ N + +V+ D +
Sbjct: 200 KSTEGKK-----------VCWICGKEGHFKRQCYKWLEKNKANGAGETALVKDDA----Q 244
Query: 271 DL--LCVSYVKCTDA------WVLDSGCSCHMTPHREWFNSFKSCDFGYVYLGDDKPCII 322
DL L S V ++ W++D+GCS HMTP +E+ F G V + ++ +
Sbjct: 245 DLVGLVASEVNMSEGKDDQEEWIMDTGCSFHMTPRKEYLMDFVEAKSGKVRMANNSFSEV 304
Query: 323 KGM*QVKIALDDG 335
KG+ +VK DG
Sbjct: 305 KGIGKVKFIKKDG 317
Score = 55.8 bits (133), Expect = 2e-07
Identities = 25/40 (62%), Positives = 30/40 (74%)
Query: 501 TDDFSRKVWVYFLKYKSEVFAKFKLWKAEVENQTGRKIKY 540
T+D+SRKVWVYFLK K E FA F WK VE Q+ RK+K+
Sbjct: 318 TNDWSRKVWVYFLKTKDEAFASFTEWKKMVETQSERKLKH 357
>At4g03810 putative retrotransposon protein
Length = 964
Score = 178 bits (452), Expect = 2e-44
Identities = 92/209 (44%), Positives = 135/209 (64%), Gaps = 2/209 (0%)
Query: 1300 AKKILGMEIHREKGAKKLWLSQNSYVEGVLSRFDMSKANPVSTPLANHFKLSLEQCPKTA 1359
A ILG+ I+R++ K + LSQ++Y++ VL RF+M + P+++ LS QCP T
Sbjct: 671 AAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTH 730
Query: 1360 SEIEGMSKISHASAVGCLMYVMVCTRPDLAQAASQVCKFMSKPGKQHWEAVKWILRYLKG 1419
E E MSKI +ASA+G +MY M+ TRPD+A A S ++ S PG+ HW V+ I +YL+
Sbjct: 731 DERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRR 790
Query: 1420 TADRGIMFSREQGVVPLVVGYVDSDYAGDLDDRRSTTGYVFTLAGGPICWKSSVQSIVAM 1479
T D+ +++ + +V V GY D+ + D DD RS +G+ F L GG + WKS+ QS VA
Sbjct: 791 TKDKFLVYGGSEELV--VSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVAD 848
Query: 1480 STTEAEYMAVAEAVKEALWLTGLVKKLGV 1508
STTEAEY+A +EA KE +W+ + +LGV
Sbjct: 849 STTEAEYIAASEAAKEVVWIRKFITELGV 877
Score = 117 bits (292), Expect = 7e-26
Identities = 68/209 (32%), Positives = 105/209 (49%), Gaps = 12/209 (5%)
Query: 337 VRTLSQVRYVPEVTKNLISLGTLHENGYSFK------SEENRDILRVSKGAMTVMRAKRT 390
V L YVP + KN+IS+ L G+ F S + D+ S +
Sbjct: 2 VLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQ 61
Query: 391 AGNIYKLLGSTVMGDVASVETDDDATKLWHMRLGHLSERGMMELYKRNLLKGVRSCTIGL 450
+ IY + + D + T LWH RLGH++E+ + +L+ LL +
Sbjct: 62 SMPIYNIRTKKFKSN------DLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYET 115
Query: 451 CKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFVTFTDDFSRKVWV 510
C+ C+LGK + F + +L +H+DV GP + G ++YF+TFTDDFSR +V
Sbjct: 116 CESCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYV 175
Query: 511 YFLKYKSEVFAKFKLWKAEVENQTGRKIK 539
Y +K+KS+ F FK ++ EV+NQ G+ IK
Sbjct: 176 YLMKHKSKSFENFKEFQNEVQNQFGKSIK 204
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.341 0.149 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,561,145
Number of Sequences: 26719
Number of extensions: 1328977
Number of successful extensions: 5529
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4852
Number of HSP's gapped (non-prelim): 351
length of query: 1582
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1469
effective length of database: 8,299,349
effective search space: 12191743681
effective search space used: 12191743681
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0279a.6