BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0278.5.1
(30 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41500 putative U4/U6 small nuclear ribonucleoprotein 36 0.003
At2g22040 unknown protein 28 1.2
At4g29830 unknown protein 27 1.6
At5g25150 transcription initiation factor IID-associated factor-... 27 2.7
At3g21060 hypothetical protein 27 2.7
At2g47410 putative WD-40 repeat protein 27 2.7
At5g49430 WD-40 repeat protein-like 26 3.5
At3g18860 unknown protein 26 3.5
At2g46340 putative photomorphogenesis repressor protein 26 3.5
At1g73720 unknown protein 26 3.5
At1g21655 unknown protein 26 3.5
At3g18130 protein kinase C-receptor/G-protein, putative 26 4.6
At1g48630 unknown protein 26 4.6
At1g18080 putative guanine nucleotide-binding protein beta sub... 26 4.6
At5g64730 unknown protein 25 6.0
At3g63460 putative protein 25 6.0
At5g50230 putative protein 25 7.9
At3g15880 putative WD-repeat protein 25 7.9
At1g49910 mitotic checkpoint protein, putative 25 7.9
At1g24530 unknown protein 25 7.9
>At2g41500 putative U4/U6 small nuclear ribonucleoprotein
Length = 554
Score = 36.2 bits (82), Expect = 0.003
Identities = 17/30 (56%), Positives = 22/30 (72%), Gaps = 3/30 (10%)
Query: 4 IVTVSHDRTIKLWSSNMTNDNE---HTMDV 30
I TVSHDRTIKLW+S+ +D + TMD+
Sbjct: 523 IATVSHDRTIKLWTSSGNDDEDEEKETMDI 552
>At2g22040 unknown protein
Length = 312
Score = 27.7 bits (60), Expect = 1.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 3 YIVTVSHDRTIKLWSS 18
Y+ T SHD+TI+LW +
Sbjct: 12 YLATASHDQTIRLWQA 27
Score = 25.8 bits (55), Expect = 4.6
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 1 GGYIVTVSHDRTIKLWS 17
G Y+VT S D T +LWS
Sbjct: 271 GEYLVTASSDTTARLWS 287
>At4g29830 unknown protein
Length = 321
Score = 27.3 bits (59), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 7/37 (18%)
Query: 1 GGYIVTVSHDRTIKLWS-------SNMTNDNEHTMDV 30
GG I T S DRT++LW M+N N+ V
Sbjct: 255 GGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSV 291
>At5g25150 transcription initiation factor IID-associated
factor-like protein
Length = 700
Score = 26.6 bits (57), Expect = 2.7
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 1 GGYIVTVSHDRTIKLWS 17
G Y + SHDRT ++WS
Sbjct: 472 GHYFASCSHDRTARIWS 488
>At3g21060 hypothetical protein
Length = 474
Score = 26.6 bits (57), Expect = 2.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 1 GGYIVTVSHDRTIKLWSSNMTNDNE 25
G Y++T SHDRTI+++ + + N+
Sbjct: 228 GQYLLTNSHDRTIRIYENLLPAKNK 252
>At2g47410 putative WD-40 repeat protein
Length = 1389
Score = 26.6 bits (57), Expect = 2.7
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 1 GGYIVTVSHDRTIKLWS 17
G Y++T S DR +K+WS
Sbjct: 248 GRYVITGSDDRLVKIWS 264
>At5g49430 WD-40 repeat protein-like
Length = 1576
Score = 26.2 bits (56), Expect = 3.5
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 1 GGYIVTVSHDRTIKLWS 17
G Y++T S DR +K+WS
Sbjct: 257 GRYVITGSDDRLVKVWS 273
>At3g18860 unknown protein
Length = 760
Score = 26.2 bits (56), Expect = 3.5
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 4 IVTVSHDRTIKLWSSNMTNDNEHTMD 29
I T S DRTI++WS + ++ ++T +
Sbjct: 34 IATSSRDRTIRVWSLDPSDKRKYTSE 59
>At2g46340 putative photomorphogenesis repressor protein
Length = 532
Score = 26.2 bits (56), Expect = 3.5
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 4 IVTVSHDRTIKLWSSNMTNDN 24
IV+ S D ++KLW+ N TN +
Sbjct: 411 IVSASTDNSLKLWNLNKTNSS 431
>At1g73720 unknown protein
Length = 511
Score = 26.2 bits (56), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 1 GGYIVTVSHDRTIKLWSSNMTN 22
G I+T S D T+K+W S T+
Sbjct: 359 GSRIITASSDCTVKVWDSKTTD 380
>At1g21655 unknown protein
Length = 811
Score = 26.2 bits (56), Expect = 3.5
Identities = 9/17 (52%), Positives = 14/17 (81%)
Query: 1 GGYIVTVSHDRTIKLWS 17
GG++ + S+DRTI +WS
Sbjct: 534 GGFLFSSSYDRTILIWS 550
>At3g18130 protein kinase C-receptor/G-protein, putative
Length = 326
Score = 25.8 bits (55), Expect = 4.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 4 IVTVSHDRTIKLWSS 18
IV+ S DRTIKLW++
Sbjct: 120 IVSASRDRTIKLWNT 134
>At1g48630 unknown protein
Length = 326
Score = 25.8 bits (55), Expect = 4.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 4 IVTVSHDRTIKLWSS 18
IV+ S DRTIKLW++
Sbjct: 120 IVSASRDRTIKLWNT 134
>At1g18080 putative guanine nucleotide-binding protein beta
subunit
Length = 327
Score = 25.8 bits (55), Expect = 4.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 4 IVTVSHDRTIKLWSS 18
IV+ S DRTIKLW++
Sbjct: 120 IVSASRDRTIKLWNT 134
>At5g64730 unknown protein
Length = 299
Score = 25.4 bits (54), Expect = 6.0
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 1 GGYIVTVSHDRTIKLWS 17
G Y +T DRTI+LW+
Sbjct: 30 GNYALTCGKDRTIRLWN 46
>At3g63460 putative protein
Length = 1097
Score = 25.4 bits (54), Expect = 6.0
Identities = 8/23 (34%), Positives = 16/23 (68%)
Query: 3 YIVTVSHDRTIKLWSSNMTNDNE 25
YI + DRT+++WS ++ N+ +
Sbjct: 677 YICAGNVDRTVEIWSRSLANERD 699
>At5g50230 putative protein
Length = 515
Score = 25.0 bits (53), Expect = 7.9
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 3 YIVTVSHDRTIKLW 16
++V+ ++DRTIKLW
Sbjct: 330 HVVSAAYDRTIKLW 343
>At3g15880 putative WD-repeat protein
Length = 1160
Score = 25.0 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (64%), Gaps = 1/26 (3%)
Query: 4 IVTVSHDRTIKLWSSNMTNDNEHTMD 29
+VT D+TIK+W + +T + HT +
Sbjct: 509 VVTCGEDKTIKVWDA-VTGNKLHTFE 533
>At1g49910 mitotic checkpoint protein, putative
Length = 339
Score = 25.0 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 2 GYIVTVSHDRTIKLWSSNMTNDNEHT 27
G ++T S D+TIK W + E T
Sbjct: 110 GQVITGSWDKTIKCWDPRGASGTERT 135
>At1g24530 unknown protein
Length = 418
Score = 25.0 bits (53), Expect = 7.9
Identities = 8/18 (44%), Positives = 15/18 (82%)
Query: 2 GYIVTVSHDRTIKLWSSN 19
G+I +VS D+T+K+W ++
Sbjct: 206 GFIYSVSWDKTLKIWRAS 223
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.313 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 709,793
Number of Sequences: 26719
Number of extensions: 11305
Number of successful extensions: 137
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 35
length of query: 30
length of database: 11,318,596
effective HSP length: 6
effective length of query: 24
effective length of database: 11,158,282
effective search space: 267798768
effective search space used: 267798768
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0278.5.1