BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0269b.11
         (146 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

petA -chloroplast genome- cytochrome f                                241  1e-64
At3g05660 putative disease resistance protein                          29  0.78
At5g60040 DNA-directed RNA polymerase - like protein                   28  1.7
At1g04540 hypothetical protein                                         28  1.7
At2g31060 putative GTP-binding protein                                 27  2.9
At5g20870 beta-1,3-glucanase - like protein                            26  6.6
At5g51590 unknown protein                                              26  8.6
At5g44120 legumin-like protein                                         26  8.6
At5g17370 unknown protein                                              26  8.6
At3g05650 putative disease resistance protein                          26  8.6

>petA -chloroplast genome- cytochrome f
          Length = 320

 Score =  241 bits (614), Expect = 1e-64
 Identities = 113/134 (84%), Positives = 127/134 (94%)

Query: 13  RILANGKRGALNVGAVLILPEGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPV 72
           ++LANGK+GALNVGAVLILPEGFELAP DRISPE+KEK+GNLSFQ+YRP KKNILV+GPV
Sbjct: 94  QVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPV 153

Query: 73  PGQKYSEITFPILSPDPATNRDVNFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATKSGI 132
           PGQKYSEITFPIL+PDPATN+DV+FLKYPIYVGGNRGRGQIYPDGSKSNN VYNAT  GI
Sbjct: 154 PGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGI 213

Query: 133 INKIIRKDKGGIHL 146
           I+KI+RK+KGG  +
Sbjct: 214 ISKILRKEKGGYEI 227


>At3g05660 putative disease resistance protein
          Length = 883

 Score = 29.3 bits (64), Expect = 0.78
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 41  DRISPEIKEKMGNLSFQSYRPTKKNILVVGPVPG 74
           +++S EI +++GNLS+ +Y     N L VG VPG
Sbjct: 745 NKLSGEIPQELGNLSYLAYMNFSHNQL-VGQVPG 777


>At5g60040 DNA-directed RNA polymerase - like protein
          Length = 1328

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 27/93 (29%), Positives = 40/93 (42%), Gaps = 15/93 (16%)

Query: 39  PTDRISPEIKEKMG----NLSFQSYRPTKKNILVVGPVPGQKYSEITFPILS------PD 88
           P   I   +K K G    NLS +    T +   V+ P P  K +E+  PIL       P+
Sbjct: 338 PLSGILQRLKGKGGRFRANLSGKRVEFTGRT--VISPDPNLKITEVGIPILMAQILTFPE 395

Query: 89  PATNRDVNFLKYPIYVGGNR---GRGQIYPDGS 118
             +  ++  L+  +  G N+    R   YPDGS
Sbjct: 396 CVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGS 428


>At1g04540 hypothetical protein
          Length = 601

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 27  AVLILPEGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPVPGQKYSEITFPILS 86
           A  I+    E  PT   S E K          Y P  KN+ V    P Q+Y+ I   +++
Sbjct: 243 ASAIVSSESETLPTTTDSDEKKSS-------EYTPPSKNLRV----PRQRYNSIESDLIN 291

Query: 87  PDPATNRDV 95
           P P  N  V
Sbjct: 292 PSPMENHHV 300


>At2g31060 putative GTP-binding protein
          Length = 664

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 11/44 (25%), Positives = 25/44 (56%)

Query: 33  EGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPVPGQK 76
           +G +L P + ++ EI ++   L  ++    +  ++ +GPVPG +
Sbjct: 450 KGQKLEPIEEVTIEINDEHVGLVMEALSHRRAEVIDMGPVPGNE 493


>At5g20870 beta-1,3-glucanase - like protein
          Length = 501

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 24  NVGAVLILPE-GFELAPTDRISPEIKEKMGNL-SFQSYRPTKKNILV-VGPVPGQKYSEI 80
           NV A L+    G ++  T  ++ ++ E    L S   +R   K +++ +        S I
Sbjct: 145 NVQAALVKAGLGRQVKVTVPLNADVYESSDGLPSSGDFRSDIKTLMISIVRFLADSVSPI 204

Query: 81  TFPILSPDPATNRDVNFLKYPIYV--GGNRGRGQIYPDGSKSNNNVYNATKSGIINKI 136
           TF I  P  + N D NF +   +   GG  G  +   DGS S  NV++A    +++ +
Sbjct: 205 TFNIY-PFLSLNADPNFPREYAFFPNGGGGGGAKPVVDGSISYTNVFDANFDTLVSAL 261


>At5g51590 unknown protein
          Length = 419

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 39  PTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPVPGQKYSEITFPILSPDPATNRDVNFL 98
           P +  S E+K+K G    + Y P     + + P+P      +T    S      R     
Sbjct: 69  PVENSSSELKKKRGRP--RKYNPDGSLAVTLSPMPISSSVPLTSEFGSRKRGRGRGR--- 123

Query: 99  KYPIYVGGNRGRGQIYPDGSKSNNNVYN 126
                 G  RGRG+    GS+  NN  N
Sbjct: 124 ------GRGRGRGRGQGQGSREPNNNNN 145


>At5g44120 legumin-like protein
          Length = 472

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 101 PIYVGGNRGRGQIYPDG--SKSNNNVYNATKSGIINKIIRKD 140
           P Y+ GN  +GQ++  G   +   N++N     +I + ++ D
Sbjct: 190 PFYLAGNNPQGQVWLQGREQQPQKNIFNGFGPEVIAQALKID 231


>At5g17370 unknown protein
          Length = 467

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 10/32 (31%), Positives = 17/32 (52%)

Query: 68 VVGPVPGQKYSEITFPILSPDPATNRDVNFLK 99
          + GP+PG K S  +     P+P   ++ N+ K
Sbjct: 39 IKGPIPGAKSSSSSRTKQKPEPKPEQETNYQK 70


>At3g05650 putative disease resistance protein
          Length = 868

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 41  DRISPEIKEKMGNLSFQSYRPTKKNILVVGPVPG 74
           +++S EI +++GNLS+ +Y     N L  G VPG
Sbjct: 734 NKLSGEIPQELGNLSYLAYMNFSHNQL-GGLVPG 766


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.141    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,569,484
Number of Sequences: 26719
Number of extensions: 163612
Number of successful extensions: 335
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 10
length of query: 146
length of database: 11,318,596
effective HSP length: 90
effective length of query: 56
effective length of database: 8,913,886
effective search space: 499177616
effective search space used: 499177616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)