BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0269b.10
         (382 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

rpl23-02 -chloroplast genome-                                         639  0.0
ycf2 -chloroplast genome-                                             639  0.0
At4g05300 putative protein                                             30  2.9
At4g19970 unknown protein                                              29  3.8
At4g10560 putative protein                                             29  3.8
At3g54090 fructokinase - like protein                                  28  6.4

>rpl23-02 -chloroplast genome-
          Length = 2294

 Score =  639 bits (1648), Expect = 0.0
 Identities = 323/387 (83%), Positives = 336/387 (86%), Gaps = 8/387 (2%)

Query: 1    KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDS-YFSMI 59
            KPFLLDDH+TSQKS+FLINGGTISPFLFNKIPKWMIDSF T KNRRK FDNTDS YFS++
Sbjct: 945  KPFLLDDHNTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSAYFSIV 1004

Query: 60   SHDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDF 119
            SHD+DNWLNPVKPF RSSLISSF KANRLRFLNN +HFCFYCNKR PFYVEKA +NN DF
Sbjct: 1005 SHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFYCNKRFPFYVEKARLNNSDF 1064

Query: 120  T--YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISP--IESRVFNILILNDFPQSGDEG 175
            T  YGQFL ILFI NK FS CGGKKKHAFLERDTISP  IES+V NI I NDFPQSGDE 
Sbjct: 1065 TFTYGQFLTILFIHNKTFSSCGGKKKHAFLERDTISPSSIESQVSNIFISNDFPQSGDER 1124

Query: 176  YNLYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKN 235
            YNLYKSFHFPIRSDP V RAIYSIADIS TPL EGQ VNFERTYCQ LSDMNL DSE K+
Sbjct: 1125 YNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKS 1184

Query: 236  LHQYLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKW 295
            LHQYL FNSNMGLIH PCSEKYL    RKK   CLKKC++KGQM RTFQRDS FSTLSKW
Sbjct: 1185 LHQYLNFNSNMGLIHTPCSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKW 1241

Query: 296  NLFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQK 355
            NLFQTY+PWF TSTGYKYLN IFLDTFSDLL ILSSSQKFVSIFHDIMH  DISWRILQK
Sbjct: 1242 NLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSIFHDIMHGLDISWRILQK 1301

Query: 356  KWCLSQWNLISEISSKCFHNLLLSEEI 382
            K CL Q NLISEISSK  HNLLLSEE+
Sbjct: 1302 KLCLPQRNLISEISSKSLHNLLLSEEM 1328


>ycf2 -chloroplast genome-
          Length = 2294

 Score =  639 bits (1648), Expect = 0.0
 Identities = 323/387 (83%), Positives = 336/387 (86%), Gaps = 8/387 (2%)

Query: 1    KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDS-YFSMI 59
            KPFLLDDH+TSQKS+FLINGGTISPFLFNKIPKWMIDSF T KNRRK FDNTDS YFS++
Sbjct: 945  KPFLLDDHNTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSAYFSIV 1004

Query: 60   SHDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDF 119
            SHD+DNWLNPVKPF RSSLISSF KANRLRFLNN +HFCFYCNKR PFYVEKA +NN DF
Sbjct: 1005 SHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFYCNKRFPFYVEKARLNNSDF 1064

Query: 120  T--YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISP--IESRVFNILILNDFPQSGDEG 175
            T  YGQFL ILFI NK FS CGGKKKHAFLERDTISP  IES+V NI I NDFPQSGDE 
Sbjct: 1065 TFTYGQFLTILFIHNKTFSSCGGKKKHAFLERDTISPSSIESQVSNIFISNDFPQSGDER 1124

Query: 176  YNLYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKN 235
            YNLYKSFHFPIRSDP V RAIYSIADIS TPL EGQ VNFERTYCQ LSDMNL DSE K+
Sbjct: 1125 YNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKS 1184

Query: 236  LHQYLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKW 295
            LHQYL FNSNMGLIH PCSEKYL    RKK   CLKKC++KGQM RTFQRDS FSTLSKW
Sbjct: 1185 LHQYLNFNSNMGLIHTPCSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKW 1241

Query: 296  NLFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQK 355
            NLFQTY+PWF TSTGYKYLN IFLDTFSDLL ILSSSQKFVSIFHDIMH  DISWRILQK
Sbjct: 1242 NLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSIFHDIMHGLDISWRILQK 1301

Query: 356  KWCLSQWNLISEISSKCFHNLLLSEEI 382
            K CL Q NLISEISSK  HNLLLSEE+
Sbjct: 1302 KLCLPQRNLISEISSKSLHNLLLSEEM 1328


>At4g05300 putative protein
          Length = 387

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 305 FLTSTGYKYLNFIFL-DTFSDLLPILSSSQKFVSI--FH------DIMHRSDISWRILQK 355
           FLT TG  +L+F+ + + F ++ P L +      +  +H      +   R + SWR L+ 
Sbjct: 124 FLTCTG-NHLDFLPISEKFWEMTPTLEAGHAVAEMVMYHISQLHTENARRWERSWRCLRV 182

Query: 356 KWCLSQWNLISEISSKCFHNLLLS 379
           +   S  NL+      C HN+ ++
Sbjct: 183 RTLYSTLNLVYRTLGNCVHNISIN 206


>At4g19970 unknown protein
          Length = 715

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 20/61 (32%), Positives = 27/61 (43%), Gaps = 5/61 (8%)

Query: 34  WMIDSFDTIKNRRKFFDNTDSYFSMISHDEDNWLNP----VKPFHRSSLISSFYKANRLR 89
           W+ D F  +     F    D +F    HD DNW+N     VK  HRS     F+  +RL 
Sbjct: 563 WLRDPFPRLYPDGDFQMACDRFFGD-PHDSDNWVNGGFTYVKSNHRSIEFYKFWYNSRLD 621

Query: 90  F 90
           +
Sbjct: 622 Y 622


>At4g10560 putative protein
          Length = 703

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 80  SSFYKANRLRFLNNRYHF----CFYCNKRLPFYV 109
           SSFY    +  L+N +H     C YC KR P+ +
Sbjct: 649 SSFYLEKTVDVLSNNHHMTRPICCYCEKRCPYKI 682


>At3g54090 fructokinase - like protein
          Length = 471

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 29  NKIPKWMIDSFDTIKNRRKFFDNTDSYFSMISHDE 63
           N  P++  + FD  KNRR ++  T      + HD+
Sbjct: 327 NYTPQYFAEDFDQTKNRRDYYHYTPEEIKSLWHDK 361


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.325    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,520,876
Number of Sequences: 26719
Number of extensions: 432462
Number of successful extensions: 1073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 11
length of query: 382
length of database: 11,318,596
effective HSP length: 101
effective length of query: 281
effective length of database: 8,619,977
effective search space: 2422213537
effective search space used: 2422213537
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)