BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0265.8
         (765 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g37060 Athila retroelment ORF 1, putative                          181  2e-45
At4g07640 putative athila transposon protein                          178  1e-44
At4g07600                                                             155  1e-37
At2g14040 putative retroelement pol polyprotein                       154  1e-37
At2g10620 putative Athila retroelement ORF1 protein                   154  1e-37
At1g36560 hypothetical protein                                        151  1e-36
At4g07370                                                             146  5e-35
At3g31340 Athila ORF 1, putative                                      144  1e-34
At3g32890 Athila ORF 1, putative                                      143  4e-34
At4g03790 putative athila-like protein                                138  1e-32
At4g07660 putative athila transposon protein                          137  2e-32
At4g08050                                                             135  1e-31
At3g31500 hypothetical protein                                        129  8e-30
At3g32000 unknown protein                                             128  1e-29
At4g08490 putative athila-like protein                                128  1e-29
At4g07780 putative athila transposon protein                          125  7e-29
At4g03850 putative transposon protein                                 124  3e-28
At1g37070 hypothetical protein                                        124  3e-28
At2g10670 pseudogene                                                  123  3e-28
At2g10660 putative Athila retroelement ORF1 protein                   121  1e-27

>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  181 bits (458), Expect = 2e-45
 Identities = 120/333 (36%), Positives = 179/333 (53%), Gaps = 31/333 (9%)

Query: 408 NPKENCSAITLRSGATLSEPKQKIVENNNVNDEFVGDIEPLGEN-KKKQKEKEE------ 460
           N KE   AITLRSG  L   +     N N  D    D E   +N    +K  EE      
Sbjct: 427 NSKEYAHAITLRSGKELPTKESP---NQNTEDSLDQDGEDFCQNGNSAEKAIEEPILHQP 483

Query: 461 ------------EKRKVELEKKFTKVPFP-----PFPTNIAKRRLEKQFSKFISMFKKLR 503
                       EK      K+   +P P     PFP    K  ++K  +      K L 
Sbjct: 484 TRPLAPAASPLVEKPAAAKTKENVFIPPPYKPPLPFPGRFKKVMIQKYKALLEKQLKNLE 543

Query: 504 VELPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLPPKRK-DPGS 562
           V +P  + L  +P   K++K+++++  R+ E   +V L+ ECS I+Q+K+ PK+  DPGS
Sbjct: 544 VTMPLVDCLALIPDSNKYVKDMITE--RIKEVQGMVVLSHECSAIIQQKIIPKKLGDPGS 601

Query: 563 FTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVV 622
           FTLP   G     + LCDLG+SV+LMPL + ++L   + KP  + L LADRS+    G++
Sbjct: 602 FTLPCALGPLAFSKCLCDLGASVSLMPLPVAKKLGFNKYKPCNISLILADRSVRISHGLL 661

Query: 623 EDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTISLRVA-DEKI 681
           ED+ V +G  E P DFV+++MDE+ K PLILGRPFLA ++A I+V KG I L +  D K+
Sbjct: 662 EDLPVMIGVVEVPTDFVVLEMDEEPKDPLILGRPFLARARAIIDVKKGKIDLNLGRDLKM 721

Query: 682 GFNIFDLKPKPVEKNDVFLVKMMEEWSDEKLKQ 714
            F+I +   KP  + ++F ++ M+  +D+ L++
Sbjct: 722 TFDITNTMKKPTIEGNIFWIEEMDMLADKMLEE 754


>At4g07640 putative athila transposon protein
          Length = 866

 Score =  178 bits (451), Expect = 1e-44
 Identities = 105/291 (36%), Positives = 169/291 (57%), Gaps = 7/291 (2%)

Query: 468 EKKFTKVPFPP---FPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFIKE 524
           EK F   P+ P   FP    K   +K  + F    K++ + +P  + L  +P   KF+K+
Sbjct: 444 EKVFVPPPYKPELPFPGRHKKALADKYRAMFAKNIKEVELRIPLVDALALIPDSHKFLKD 503

Query: 525 ILSKKRRLSEENEIVELTEECSVILQRKLPPKR-KDPGSFTLPVNFGASKQVRALCDLGS 583
           ++ +  R+ E   +V L+  CS I+Q+K+ PK+  DPGSFTLP + G     R LCDLG+
Sbjct: 504 LIVE--RIQEVQGMVVLSHGCSAIIQKKIIPKKLSDPGSFTLPCSLGPLAFNRCLCDLGA 561

Query: 584 SVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGEFEFPVDFVIIDM 643
           SV+LM LS+ +RL   + K + + L LADRS+  P G++++  + +G  E P DFV+++M
Sbjct: 562 SVSLMALSVAKRLGFTQYKSSNISLILADRSVRIPHGLLKNFGITIGAVEIPTDFVVLEM 621

Query: 644 DEDSKIPLILGRPFLATSQAKINVGKGTISLRVA-DEKIGFNIFDLKPKPVEKNDVFLVK 702
           DE+ K PLILGRPFLAT+ A I+V KG I L +  D ++ F++ D   KP  +  +F +K
Sbjct: 622 DEEPKDPLILGRPFLATAGAMIDVKKGKIDLSLGKDFRMTFDVKDAMKKPTIEGQLFWIK 681

Query: 703 MMEEWSDEKLKQFFLKEKAGASNKKKKEDT*INQTEQVYSMSMVVNSELKE 753
            M++ +DE L++   ++   ++  K  ED  ++     Y   +  N  ++E
Sbjct: 682 EMDQLADELLEELAEEDHLNSALTKSGEDGFLHLETFGYQKLLDSNKAMEE 732


>At4g07600
          Length = 630

 Score =  155 bits (391), Expect = 1e-37
 Identities = 90/239 (37%), Positives = 145/239 (60%), Gaps = 4/239 (1%)

Query: 495 FISMFKKLRVELPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLP 554
           F    K++ + +P  + L  +    KF+K+++ +  R+ E   +V L+ ECS I+Q+K+ 
Sbjct: 2   FAKNIKEVELRIPLVDALALILDTHKFLKDLIVE--RIQEVQGMVVLSHECSAIIQKKIV 59

Query: 555 PKR-KDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADR 613
           PK+  DPGSFTLP   G     R LCDLG+ V+ MPLS+ +RL   + K   + L LADR
Sbjct: 60  PKKLSDPGSFTLPCFLGTVAFNRCLCDLGALVSPMPLSIAKRLGFTQYKSCNISLILADR 119

Query: 614 SIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTIS 673
           S+    G+++++ +R+G  E   DFVI++MDE+ K PLIL RPFLAT+ A I+V KG I 
Sbjct: 120 SVRISHGLLKNLPIRIGAAEISTDFVILEMDEEPKDPLILRRPFLATAGAMIDVKKGKID 179

Query: 674 LRVA-DEKIGFNIFDLKPKPVEKNDVFLVKMMEEWSDEKLKQFFLKEKAGASNKKKKED 731
           L +  D ++ F+I D   KP  +  +F ++ M++ +DE L++   ++   ++  K  +D
Sbjct: 180 LNLGKDFRMTFDIKDAMKKPNIEGQLFWIEEMDQLADELLEELAQEDHLNSALTKTGQD 238


>At2g14040 putative retroelement pol polyprotein
          Length = 841

 Score =  154 bits (390), Expect = 1e-37
 Identities = 102/262 (38%), Positives = 135/262 (50%), Gaps = 38/262 (14%)

Query: 453 KKQKEKEEEKRKVELEKKFTKVPFPPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVL 512
           K +K+  EEK K  +   +  VP  PFP    K + EK++S F              E++
Sbjct: 2   KLRKQTLEEKAKKTVLPPY--VPKLPFPGRQRKIQREKEYSLF-------------DEIM 46

Query: 513 EKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGAS 572
            ++ +Y+                        ECS ILQ  +P KR+DPGSF LP   G  
Sbjct: 47  RQLQRYSP-----------------------ECSAILQNVIPVKREDPGSFVLPSRIGEY 83

Query: 573 KQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGEF 632
              R LCDLG+ V+LMP S+ +RL      PT M L L DRSI  P GV EDV VRVG F
Sbjct: 84  TFDRCLCDLGAGVSLMPFSVAKRLGDTNFTPTKMSLVLGDRSISFPVGVAEDVQVRVGNF 143

Query: 633 EFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTISLRVADEKIGFNIFDLKPKP 692
             P DFVII++DE+ +  LILGRPFL    A I+V K  I+LR+ D    FN+  +  KP
Sbjct: 144 YIPTDFVIIELDEEPRHRLILGRPFLNIVAALIDVRKSKINLRIGDIVQEFNMERIMSKP 203

Query: 693 VEKNDVFLVKMMEEWSDEKLKQ 714
             +   F V +M+E  +E L +
Sbjct: 204 TTECQTFWVDIMDELVNELLAE 225


>At2g10620 putative Athila retroelement ORF1 protein
          Length = 451

 Score =  154 bits (390), Expect = 1e-37
 Identities = 113/386 (29%), Positives = 180/386 (46%), Gaps = 73/386 (18%)

Query: 387 GTDGQANVRKTPGMFPSDTVINPKENCSAITLRSGATL------------SEPKQKIVEN 434
           G     + +K     P   + NPKE   AITLRSG  L              P +K  +N
Sbjct: 53  GNSASTSAQKQTSQLPGKAIQNPKEYAHAITLRSGKALPTIEAPKTVTVGKRPSRKTSKN 112

Query: 435 NN----------------VNDEFVG------DIEPLGENKKKQKEKEEEKRKVELEKK-- 470
           +                 +   F G       ++  GE+    K++ +++ +  L++   
Sbjct: 113 DRGRTGRERNSKGTKAKEMGKRFGGVIVTEDSVDHDGEDFSLTKDQADKELEQPLDQSLE 172

Query: 471 -----FTKVPFP----------------------------PFPTNIAKRRLEKQFSKFIS 497
                FT+ PFP                             FP    K    K    F  
Sbjct: 173 QPLDHFTRPPFPITAPTAVKPVVVKNKEKVFVPPPYKPHPSFPGRHKKALAHKYRVMFAK 232

Query: 498 MFKKLRVELPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLPPKR 557
             K++ +++P  + L  +    KF+K+++ +  R+ E   +V L++ECS I+Q+K+  K+
Sbjct: 233 NIKEVELQIPLVDALALIMDSHKFLKDLIVE--RIQELQGMVVLSDECSAIIQKKIIHKK 290

Query: 558 -KDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIV 616
             DPGSFTLP + G     + LCDLG+S +LMPLS+ +RL   + K   + L LADRS+ 
Sbjct: 291 LSDPGSFTLPCSLGPLAFNKCLCDLGASASLMPLSVTKRLGFTQYKSCNISLILADRSVR 350

Query: 617 TPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTISLRV 676
            P   +E++ +R+   E P DFV+++MDE+ K  LILGRPFL T  A I + KG I+L +
Sbjct: 351 IPHDFLENIPIRIRAVEIPTDFVVLEMDEEPKDHLILGRPFLTTVGAMIYIKKGKINLNL 410

Query: 677 A-DEKIGFNIFDLKPKPVEKNDVFLV 701
             D ++ F++ D   KP  +  + L+
Sbjct: 411 GKDFRMTFDVKDTMKKPTIEGQLLLM 436


>At1g36560 hypothetical protein
          Length = 524

 Score =  151 bits (382), Expect = 1e-36
 Identities = 98/277 (35%), Positives = 152/277 (54%), Gaps = 10/277 (3%)

Query: 456 KEKEEEKRKV--ELEKKFTKVPFPP--FPTNIAKRRLEKQFSKFISMFKKLRVELPFSEV 511
           +   EEK  +   + K+F   P P    P    K  + +  S       ++   +P  EV
Sbjct: 14  RSTSEEKAAIIERMVKRFKPTPLPSRALPWTFRKAWMARYKSVAAKQLNEIEAVMPLMEV 73

Query: 512 LEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGA 571
           L  +P   K ++ ++ +  ++  +++            +R +  K +DPGSFTLP + G+
Sbjct: 74  LNLIPNPHKDVRNLILEWIKMYHDSDDESDATPSRAADKRIVQEKLEDPGSFTLPCSLGS 133

Query: 572 SKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGE 631
               + LCDLG+SV+LMPLS+ +RL   + K   + L LAD S+  P GV+ED+ +++G+
Sbjct: 134 LTFNKCLCDLGASVSLMPLSVAKRLGFNKYKYCNISLILADGSVRQPHGVLEDLPIKIGK 193

Query: 632 FEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTISLRVA-DEKIGFNIFDLKP 690
            E P DF+I++MDE+ K PLILGRPFLAT+ A I+V +G I L +  D K+ F+I D   
Sbjct: 194 VEVPTDFIILNMDEEPKDPLILGRPFLATAGAIIDVKQGKIDLNMGKDFKMKFDINDAMK 253

Query: 691 KPVEKNDVFLVKMMEEWSDEKLKQFFLKEKAGASNKK 727
           KP  +   FLV+  +   DE L +  LKE   A+N K
Sbjct: 254 KPTIEGQTFLVEETDRLVDELLVE--LKE---ANNSK 285


>At4g07370
          Length = 531

 Score =  146 bits (368), Expect = 5e-35
 Identities = 105/339 (30%), Positives = 167/339 (48%), Gaps = 42/339 (12%)

Query: 387 GTDGQANVRKTPGMFPSDTVINPKENCSAITLRSGATLSEPKQKIVENNNVNDEFVGD-- 444
           G     +  K  G+ P  ++ NPKE       R  +   +   +  E+ ++N++ V    
Sbjct: 54  GESASTSSPKVTGL-PGKSIQNPKEE------RPKSVTEDSAYQDGEDFSLNEDQVDKPT 106

Query: 445 --IEPLGENKKKQKEKEEEKRKVEL------EKKFTKVPFPP---FPTNIAKRRLEKQFS 493
             +EP+ +   +          ++L      E  F   P+ P   FP    K   +K  +
Sbjct: 107 EVLEPILDRDTRPTNPLTSSAALKLVAAKNNEIAFIPPPYKPPLPFPGRHKKEVEDKYRA 166

Query: 494 KFISMFKKLRVELPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRK- 552
            F    KK+ + +P ++ L  +P   KF+K+++ +  R+ E  +   L+ ECS I+Q   
Sbjct: 167 MFAKNIKKVELRIPLADALTHIPDSQKFLKDLIME--RIQEVQKTTVLSHECSAIIQEND 224

Query: 553 LPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLAD 612
           +  K  DPGSFTLP + G+    + LCDLG SVNLMPLS+                  A 
Sbjct: 225 VSEKLGDPGSFTLPCSLGSLTFNKCLCDLGPSVNLMPLSV------------------AK 266

Query: 613 RSIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTI 672
           RS+  P G++ED+ +++   E P DFV+++MDE+ K PLILGRPFLAT    I+V +G I
Sbjct: 267 RSVRLPHGLLEDLPIKIRNVEVPTDFVVLNMDEEPKDPLILGRPFLATVGVIIDVKQGKI 326

Query: 673 SLRVADE-KIGFNIFDLKPKPVEKNDVFLVKMMEEWSDE 710
            L +    ++ F+I D   KP  +   FLVK ++  + E
Sbjct: 327 DLNLGKNFEMKFDINDAMKKPTIEEQTFLVKEVDRLAGE 365


>At3g31340 Athila ORF 1, putative
          Length = 781

 Score =  144 bits (364), Expect = 1e-34
 Identities = 98/276 (35%), Positives = 136/276 (48%), Gaps = 38/276 (13%)

Query: 431 IVENNNVNDEFVGDIEPLGENKKKQKEKEEEKRKVELEKKFTKVPFPPFPTNIAKRRLEK 490
           +V    V D+ V D EPL E               E      K+PFP     I  R+ E+
Sbjct: 444 VVVETLVEDKIVEDDEPLSE---------------EPPPYVPKLPFPGRERQIQSRKREE 488

Query: 491 QFSKFISMFKKLRVELPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQ 550
                      L VE   S+  +K  Q    ++ +  K           E+   CS I  
Sbjct: 489 Y---------ALLVE---SQRQQKEAQLTDVVEVLAGK-----------EMVSTCSAIPP 525

Query: 551 RKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQL 610
             +P K  DPGSF LP   G S   R LCDLG+ VNLMPLSM +RL +   KP+ + L L
Sbjct: 526 ATIPEKLGDPGSFVLPCRIGKSAFERCLCDLGAGVNLMPLSMSKRLGITNFKPSRISLIL 585

Query: 611 ADRSIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKG 670
           ADRS+  P G+ E+V VRVG+F  P DFV++++D++   PL LGRPFL T  A I+V + 
Sbjct: 586 ADRSVRFPVGLAENVHVRVGDFYIPTDFVVLELDKEPHDPLTLGRPFLNTVGAIIDVRRS 645

Query: 671 TISLRVADEKIGFNIFDLKPKPVEKNDVFLVKMMEE 706
           TI+L++ D  + F++   +  P  +   F V   +E
Sbjct: 646 TINLQIGDFALEFDMKGTRKNPTIEGHAFSVDTNDE 681


>At3g32890 Athila ORF 1, putative
          Length = 755

 Score =  143 bits (360), Expect = 4e-34
 Identities = 108/349 (30%), Positives = 174/349 (48%), Gaps = 21/349 (6%)

Query: 389 DGQANVRKTPGM--FPSDTVINPKENCSAITLRSGATLSEPKQKIVENNNVNDEFVGDIE 446
           +GQ+    TP +   P  ++ NPKE  +A  +    T+   ++  +   +V D   GD +
Sbjct: 356 EGQSASTSTPKVTGLPGKSIQNPKEYATAHAI----TICHDRE--LPTRHVPDFITGDSD 409

Query: 447 PLGENKKKQKEKEEEKRKVE-LEKKFTKVPFPP--FPTNIAKRRLEKQFSKFISMFKKLR 503
                   Q   EE+   +E + K+F   P P    P    K  +EK  S       ++ 
Sbjct: 410 VQDGEASTQSTSEEKAAIIERMVKRFKPTPLPSSALPWTFRKAWMEKYKSVASKQLDEIE 469

Query: 504 VELPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSF 563
             +P  EVL  +P   K ++ ++ ++ ++  +++            +R +  K +DPGSF
Sbjct: 470 AVMPLIEVLNLIPDPHKDVRNLILERIKMYHDSDDESDATPSRASDKRIVQEKLEDPGSF 529

Query: 564 TLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVE 623
           TLP + G       LCDLG+SV+LMPLS+  RL   + KP  + L LADRS   P+G+++
Sbjct: 530 TLPCSIGELAFSDCLCDLGASVSLMPLSVARRLEFIQYKPCDLTLILADRSFRKPFGMLK 589

Query: 624 DVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTISLRVADE-KIG 682
           D+ V +   E P DFV++DM+ + K PLILGRP LA+  A I+V +G ISL +    K+ 
Sbjct: 590 DLPVMINGVEVPTDFVVLDMEVEHKDPLILGRPLLASVGAVIDVREGKISLNLGKHIKLQ 649

Query: 683 FNIFDLKPKPVEK-----NDVFLVKMMEEWSDEKLKQFFLKEKAGASNK 726
           F I        E      ND  + +  E +  E++K+  LK+K+   +K
Sbjct: 650 FGINKTPQGSTEDGRTSGNDRVISR--EGYETERVKE--LKKKSDKQDK 694


>At4g03790 putative athila-like protein
          Length = 1064

 Score =  138 bits (348), Expect = 1e-32
 Identities = 97/306 (31%), Positives = 153/306 (49%), Gaps = 17/306 (5%)

Query: 387 GTDGQANVRKTPGMFPSDTVINPKENCSAITLRSGATLSEPKQKIV-----ENNNVNDEF 441
           G     +V K  G+ P  ++ NPKE  +A  +        P + ++     E++    E 
Sbjct: 223 GQSASTSVPKVTGL-PGKSIQNPKEYATAHAITICHDRELPTRPVLDLIIGESDVQEGEA 281

Query: 442 VGDIE--------PLGENKKKQKEKEEEKRKVE-LEKKFTKVPFPP--FPTNIAKRRLEK 490
              IE          G +   Q   EE+   +E + K+F   P P    P    K  +E+
Sbjct: 282 CTQIEVSVIEFNHSAGSHHLIQSTSEEKAAIIERMVKRFKPTPLPSRALPWTFRKAWIER 341

Query: 491 QFSKFISMFKKLRVELPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQ 550
             S       ++   +P  EVL  +P + K ++ ++ +K ++  +++         V+ +
Sbjct: 342 YKSVAAKQLDEIEAVMPLMEVLNLIPDHHKDVRNLILEKIKMYHDSDDESDATPSRVVDK 401

Query: 551 RKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQL 610
           R +  K +DPGSFTLP + G       LCDLG+SV+LMPLSM  RL     KP  + L L
Sbjct: 402 RIVQEKLEDPGSFTLPCSIGELAFSDFLCDLGASVSLMPLSMGRRLEFIHYKPCDLTLIL 461

Query: 611 ADRSIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKG 670
           ADRS   P+G+++D+ V +   E P DFV+++M+   K PLILGRPFLA+  A I++ +G
Sbjct: 462 ADRSSRKPFGMLKDLPVMINGVEVPTDFVVLNMEVKHKDPLILGRPFLASVGAVIDIREG 521

Query: 671 TISLRV 676
            ISL +
Sbjct: 522 KISLNL 527


>At4g07660 putative athila transposon protein
          Length = 724

 Score =  137 bits (345), Expect = 2e-32
 Identities = 84/223 (37%), Positives = 132/223 (58%), Gaps = 7/223 (3%)

Query: 548 ILQRKLPPKRK-DPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMM 606
           I Q+K+ PK+  DPGSFTLP + G     R LCDLG+ V+LMPLS+ +RL   + K   +
Sbjct: 4   ITQKKIVPKKLIDPGSFTLPCSLGPLAFKRCLCDLGALVSLMPLSVAKRLGFTQYKSCNI 63

Query: 607 MLQLADRSIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKIN 666
            L LADRS+  P  + E++ +R+G  + P DFV+++MDE+ K PLILGRPFLAT+ A  +
Sbjct: 64  SLILADRSVRIPHSLFENLPIRIGAVDIPTDFVVLEMDEEPKDPLILGRPFLATAGAMND 123

Query: 667 VGKGTISLRVADE-KIGFNIFDLKPKPVEKNDVFLVKMMEEWSDEKLKQFFLKEKAGASN 725
           V KG I L +    ++ F++ D   KP  K  +F ++ +++ +DE L++   ++   ++ 
Sbjct: 124 VKKGKIDLNLGKYCRMTFDVKDAMKKPTIKGQLFWIEEIDQLADELLEERAEEDHLYSAL 183

Query: 726 KKKKEDT*INQTEQVY-----SMSMVVNSELKEKINTKQKEEM 763
            K+ ED  ++     Y     S   +  SE  E++N  + E M
Sbjct: 184 TKRGEDGFLHLETLGYQKLLDSHKAMEESEPFEELNGPETEVM 226


>At4g08050
          Length = 1428

 Score =  135 bits (339), Expect = 1e-31
 Identities = 103/336 (30%), Positives = 164/336 (48%), Gaps = 24/336 (7%)

Query: 402 PSDTVINPKENCSAITLRSGATLSEPKQKIVE----NNNVND-EFVGDIEP--------L 448
           P  ++ NPKE  +A  +        P + +++    +N+V + E    +E          
Sbjct: 400 PGKSIQNPKEYATAHAITICHDRELPTRHVLDLITRDNDVQEGEASTQVEASVVEFNHSA 459

Query: 449 GENKKKQKEKEEEKRKVE-LEKKFTKVPFP--PFPTNIAKRRLEKQFSKFISMFKKLRVE 505
           G     Q   EE+   +E + K+F   P P    P    K  +E+  S       ++   
Sbjct: 460 GSRHLTQSTSEEKAAIIERMVKRFKPTPLPLRALPWTFRKAWMERYKSVAAKQLDEIEAV 519

Query: 506 LPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTL 565
           +P  EVL  +    K ++ ++ ++ ++  +++            +R +  K +DPGSFTL
Sbjct: 520 MPLMEVLNLILDPHKVVRNLILERIKMYHDSDDESDATPSRAADKRIVQEKLEDPGSFTL 579

Query: 566 PVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDV 625
           P + G       LCDLG+SVNLMPLSM  RL   + KP  + L LADRS    +G+++D+
Sbjct: 580 PCSIGEFAFSDCLCDLGASVNLMPLSMARRLEFIQYKPCDLTLILADRSSRKHFGMLKDL 639

Query: 626 LVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTISLRVADE-KIGFN 684
            V +   E P DFV++DM+ + K PLILGRPFLA+  A I+V +G I L +    K+ FN
Sbjct: 640 PVMINGVEVPTDFVVLDMEVEHKDPLILGRPFLASVGAVIDVKEGKIGLNLGKHIKLQFN 699

Query: 685 IFDLKPKPVEK-----NDVFLVKMMEEWSDEKLKQF 715
           I        E      ND  + +  EE+  E++K+F
Sbjct: 700 INRTPQGSTEDGRTSGNDRVISR--EEYETERVKEF 733


>At3g31500 hypothetical protein
          Length = 591

 Score =  129 bits (323), Expect = 8e-30
 Identities = 90/294 (30%), Positives = 157/294 (52%), Gaps = 26/294 (8%)

Query: 410 KENCSAITLRSGATLSEPKQKIVENNNVNDEFVGDIEPLGENKKKQKEKEEEKRKVELEK 469
           KE C AI ++      E  ++IV    V    V  +E L E+K  +   ++E   VE   
Sbjct: 234 KEQCYAIMIQ------EELREIVVAKQVETNVVV-VETLVEDKIVE---DDEPLSVEPPP 283

Query: 470 KFTKVPFPPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFIKEILSKK 529
              K+PFP     I +   +K++++F  + K+L V LPF +++  +P Y  ++K ILS K
Sbjct: 284 YVPKLPFPGRERQIQR---QKEYARFDEIMKQLYVRLPFLQLVLHVPSYRSYLKYILSNK 340

Query: 530 RRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMP 589
           R + E  +++   EE + +++ +   +++     T  V   A K++   C       + P
Sbjct: 341 RSIEEGVKLISKGEEHAQLVESQ---RQQKEAQLTNVVEMLAGKEMVNTCSA-----IPP 392

Query: 590 LSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKI 649
            ++ ++L +   KP+ + L LADRS+  P G+ E+V  RVG F  P +FV++++D++   
Sbjct: 393 ATIPKKLGITNFKPSRISLILADRSVQFPMGLAENVHARVGNFYIPTNFVVLELDKEPHD 452

Query: 650 PLILGRPFLATSQAKINVGKGTISLRVADEKIGFNIFDLKPKP-----VEKNDV 698
           PL LGRPFL T +A I+V + TI+L++ D  + F+I   +  P     +E +DV
Sbjct: 453 PLNLGRPFLNTVEAIIDVRRSTINLQIGDYALEFDIKGTRKNPTIEDCIELSDV 506


>At3g32000 unknown protein
          Length = 839

 Score =  128 bits (322), Expect = 1e-29
 Identities = 99/316 (31%), Positives = 155/316 (48%), Gaps = 26/316 (8%)

Query: 455 QKEKEEEKRKVE-LEKKFTKVPFPP--FPTNIAKRRLEKQFSKFISMFKKLRVELPFSEV 511
           Q   EE+   +E + K+F   P P    P    K  +E+  S       ++   +P  EV
Sbjct: 470 QSTSEEKAAIIERMVKRFKPTPLPSRALPWTFRKSWMERYKSVAAKQPDEIEAVMPLMEV 529

Query: 512 LEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGA 571
           L  +P   K ++ ++ ++ ++  +++            +R +  K +DPGSF+LP + G 
Sbjct: 530 LNLIPDPHKDVRNLILERIKMYHDSDDESDATPSRAADKRIVQEKLEDPGSFSLPCSIGE 589

Query: 572 SKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGE 631
                 LCDLG+ V+LMP S+  RL   + KP  + L LADRS   P+G+++D+ V +  
Sbjct: 590 FAFSDCLCDLGAFVSLMPCSVARRLEFIQYKPCDLTLILADRSSRKPFGMLKDLPVMING 649

Query: 632 FEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTISLRVADE-KIGFNIFDLKP 690
            E P DFV++DM+ + K PLILGRPFLA+  A I+V +G I L +    K+ F I     
Sbjct: 650 VEVPTDFVVLDMEVEHKDPLILGRPFLASVGAVIDVREGKIGLNLGKHIKLQFGINKTPQ 709

Query: 691 KPVEK-----NDVFLVKMMEEWSDEKLKQFFLKEKAGASNKKKKEDT*INQTEQVYSMSM 745
              E      ND   V   E +  E++K+            KK+ D    Q E +  ++ 
Sbjct: 710 GSTEDGKTSGND--RVISGEGYETERVKEL-----------KKRSD---KQDETIEKLAH 753

Query: 746 VVNSELKEKINTKQKE 761
            V  EL+ K+N  QKE
Sbjct: 754 TV-EELRSKLNQLQKE 768


>At4g08490 putative athila-like protein
          Length = 587

 Score =  128 bits (321), Expect = 1e-29
 Identities = 98/349 (28%), Positives = 167/349 (47%), Gaps = 54/349 (15%)

Query: 393 NVRKTPGMFPSDTVINPKENCSAITLRSGATL-----SEPKQKIVENNNVN-DEFVGDIE 446
           ++++  G  P +   NP+++C+AI +R G  +     +E + ++     V+ D  +    
Sbjct: 51  SIKRQEGFLPGNPDANPRKSCNAILIREGDDVWEELDTEDELELAVAEMVSTDTLMYRST 110

Query: 447 PLGENKKKQKEKE-------------------EEKRKVELEKKFTKVPFPPFPTNIAKRR 487
           P G    +  + +                   E +  ++LE  +T  P  P+P    +RR
Sbjct: 111 PYGMLFSEMTQYDGVDRYPSSIDRHWIRTAPCEVQVPMQLEPVYT--PHVPYP----RRR 164

Query: 488 LEKQ---FSKFISMFKKLRVELPFSEVLEKMPQYAKFIKEILSK---------------- 528
             KQ    +K  ++ +K+   LP            +++K+++                  
Sbjct: 165 RSKQEIHVAKCTTIMEKILHILPTDASETSSASLNRYVKQLVDNGISSDEAKLLTRDICA 224

Query: 529 ---KRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSV 585
               +   E+ + V++ E    I       K  DPGSF L  +   S+  R+LCDLGSS+
Sbjct: 225 IMLPKAKKEKAQRVDIAEYIRTITPGLTTEKLPDPGSFVLDCSISTSRFSRSLCDLGSSI 284

Query: 586 NLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDE 645
           NLM  S+ ERL + + +PT + L  ADRS     G++EDV V+VG    P DFV++D ++
Sbjct: 285 NLMSKSVVERLGMTQYRPTRITLLFADRSKRISEGILEDVPVKVGNSIIPADFVVLDYEK 344

Query: 646 DSKIPLILGRPFLATSQAKINVGKGTISLRVADEKIGFNIFDLK-PKPV 693
           + K PLILGR FLAT+ A+ +V +G I L+V D ++ F +  L+  KP+
Sbjct: 345 EPKNPLILGRAFLATAAARFDVKRGRIFLKVCDSEMEFGMDSLELTKPI 393


>At4g07780 putative athila transposon protein
          Length = 446

 Score =  125 bits (315), Expect = 7e-29
 Identities = 77/211 (36%), Positives = 115/211 (54%), Gaps = 12/211 (5%)

Query: 523 KEILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLG 582
           K+   +K +  +  E++          ++ +  K  DPGSFTLP + G     R LCDLG
Sbjct: 247 KKFKIEKLKKDQNQEMISRVSTQETYKKKFIQEKLDDPGSFTLPCSLGPLTFNRCLCDLG 306

Query: 583 SSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGEFEFPVDFVIID 642
           +SV+LMPLS  +RL + E K   + L L D S+  P G++ ++ V++G  E P DFV++D
Sbjct: 307 ASVSLMPLSTAKRLGIVEYKFCNLALLLPDGSVAHPHGLIGNLPVKIGNDEIPTDFVVLD 366

Query: 643 MDEDSKIPLILGRPFLATSQAKINVGKGTISLRVAD-EKIGFNIFDLKPKPVEKNDVFLV 701
            DE+ K PLILGRPFLA++ A I+VG G I L +    ++ FNI     K   +   F +
Sbjct: 367 TDEEGKDPLILGRPFLASAGAVIDVGNGKIDLNLEKCIEMRFNISKASGKSTTRGQSFGI 426

Query: 702 KMMEEWSDEKLKQFFLKEKAGASNKKKKEDT 732
           ++M+           + E+  A  K KKE T
Sbjct: 427 QVMD-----------VDEETEAVKKIKKEFT 446


>At4g03850 putative transposon protein
          Length = 334

 Score =  124 bits (310), Expect = 3e-28
 Identities = 91/280 (32%), Positives = 143/280 (50%), Gaps = 23/280 (8%)

Query: 488 LEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSV 547
           +E+  S       ++   +P  EVL  +    K ++ ++ ++ ++  ++           
Sbjct: 1   MERYKSVAAKQLDEIEAVMPLIEVLNLIHDPHKNVRNLILERIKMYHDSNDDSDATPSRA 60

Query: 548 ILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMM 607
             +R +  K  DPGSFTLP + G       LCDLG+SV+LMPLSM  RL   + +P  + 
Sbjct: 61  ADKRIVQEKFGDPGSFTLPCSIGELAFSDCLCDLGASVSLMPLSMARRLEFIQYRPCDLT 120

Query: 608 LQLADRSIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINV 667
           L LADR+   P+G+++D+ V +   E P+DFV++DM+ + K PLILGRPFLA+  A I+V
Sbjct: 121 LILADRASRKPFGMLKDLPVMINGVEVPIDFVVLDMEVEHKDPLILGRPFLASVGAVIDV 180

Query: 668 GKGTISLRVADEKIGFNIFDLKPKPVEKND------VFLVKMMEEWSDEKLKQFFLKEKA 721
            +G ISL +   K     FD+   P E  +         V   E++  EK+K+       
Sbjct: 181 REGKISLNLG--KHIMLQFDINKTPQESKEDEKTSGDDRVIPGEKYETEKVKEL------ 232

Query: 722 GASNKKKKEDT*INQTEQVYSMSMVVNSELKEKINTKQKE 761
                KK+ D    Q E +  ++  V  EL+ K+N  QKE
Sbjct: 233 -----KKRSD---KQEETIERLAHSV-EELRSKLNQLQKE 263


>At1g37070 hypothetical protein
          Length = 590

 Score =  124 bits (310), Expect = 3e-28
 Identities = 67/163 (41%), Positives = 99/163 (60%)

Query: 523 KEILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLG 582
           K+   +K +  +  E++          ++ +  K  DPGSFTLP + G     R LCDLG
Sbjct: 220 KKFKIEKLKKDQNQEMISSASTQETYKKKIIQEKLDDPGSFTLPCSLGPLTFNRCLCDLG 279

Query: 583 SSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGEFEFPVDFVIID 642
           +SV+LMPLS  +RL + E K   + L LAD S+  P G++E++ V++   E P DFV++D
Sbjct: 280 ASVSLMPLSTAKRLGIMEYKFCNLALLLADGSVAHPHGLIENLPVKIENVEIPTDFVVLD 339

Query: 643 MDEDSKIPLILGRPFLATSQAKINVGKGTISLRVADEKIGFNI 685
           +DE  K PLILGRPFLA++ A I+V  G I+L +   K+ F+I
Sbjct: 340 VDEKGKDPLILGRPFLASAGAVIDVRNGKINLNLEGIKMKFDI 382


>At2g10670 pseudogene
          Length = 929

 Score =  123 bits (309), Expect = 3e-28
 Identities = 105/365 (28%), Positives = 171/365 (46%), Gaps = 41/365 (11%)

Query: 393 NVRKTPGMFPSDTVINPKE--NCSAITLRSGATLSEPKQKIVENNNVNDEFVGDIEPLGE 450
           +V   P   P   + NPK+     AIT+     L     + V  +N  D  + + E   +
Sbjct: 437 SVNNNPCQLPGKAIQNPKQYSTAHAITITHDRELPT---RYVPTSNTEDSVILEGEDFYQ 493

Query: 451 NKKKQKEKEEEKRKVELEKKFTKVPFPPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSE 510
           +        EE        +    P  PF      ++ E   +K I       V  P+  
Sbjct: 494 DDVLADNPIEEPILTSQPTRPQAPPATPFA-----KKTEAAKTKDIDF-----VPPPYKP 543

Query: 511 VLEKMPQYAKFIKEILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFG 570
           +L   P   +F K +++K R L E++       +C  ++  +                  
Sbjct: 544 LL---PFPGRFKKVLVAKYRALLEKHIKDIPLVDCLALIHDE------------------ 582

Query: 571 ASKQV---RALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLV 627
             KQ+     LCDLG+SV+LMPLS+ ++L     KP  + L LADR+  TP+G++EDV V
Sbjct: 583 -HKQLTFNNCLCDLGASVSLMPLSVVKKLGFVHYKPCDLTLILADRTSKTPFGLLEDVPV 641

Query: 628 RVGEFEFPVDFVIIDMDEDSKIPLILGRPFLATSQAKINVGKGTISLRVA-DEKIGFNIF 686
            +   E P DFV+++MD +SK PLILGRPFLA+  A I+V +G I+L +  D K+ F+I 
Sbjct: 642 MINGVEVPTDFVVLEMDGESKDPLILGRPFLASVGAVIDVKQGKINLNLGEDVKMKFDIR 701

Query: 687 DLKPKPVEKNDVFLVKMMEEWSDEKLKQFFLKEKAGASNKKKKEDT*INQTEQVYSMSMV 746
           D   KP  +   FLV+ M++  +E L++   ++    +  +  E   ++     Y MS+ 
Sbjct: 702 DAMKKPTIEGQTFLVEEMDQLGNELLEEIVDRDHLQTTLTESSEAGFLSSETLSYEMSLD 761

Query: 747 VNSEL 751
            ++E+
Sbjct: 762 SHNEV 766


>At2g10660 putative Athila retroelement ORF1 protein
          Length = 1303

 Score =  121 bits (304), Expect = 1e-27
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 469 KKFTKVPFPP--FPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFIKEIL 526
           K+F   P P    P    K  +E+  S       ++   +   +VL  +P   K ++  +
Sbjct: 338 KRFKPAPLPSRALPWKFRKAWIERYNSLAEKQLDEMEAVMLLIKVLNLIPDPHKDVRNSI 397

Query: 527 SKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVN 586
            ++ ++ +++E         V ++R +  K +DPGSFTLP + G       LCDLG+SV+
Sbjct: 398 LERIKMYQDSEDECDANPSRVTVKRSVQEKLEDPGSFTLPCSIGQLVFSNCLCDLGASVS 457

Query: 587 LMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDVLVRVGEFEFPVDFVIIDMDED 646
           LMPLS+  +L   + +P  + L LADRS   P+G+++ + + +   E P DFV++ M+ +
Sbjct: 458 LMPLSVARKLEFTQYRPCDLSLILADRSSRKPFGLLKHLPLMINGVEVPTDFVVLGMEVE 517

Query: 647 SKIPLILGRPFLATSQAKINVGKGTISLRVADEKIGFNIFDLKPKP 692
            K PLILGRPFLA+  A I+V  G ISL +    +  NI   +P+P
Sbjct: 518 PKDPLILGRPFLASVGAMIDVKDGRISLNLGKTTVEENI-RAQPQP 562


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.337    0.147    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,444,672
Number of Sequences: 26719
Number of extensions: 708267
Number of successful extensions: 5167
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 4869
Number of HSP's gapped (non-prelim): 222
length of query: 765
length of database: 11,318,596
effective HSP length: 107
effective length of query: 658
effective length of database: 8,459,663
effective search space: 5566458254
effective search space used: 5566458254
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 64 (29.3 bits)