BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0264.1
(148 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19250 hypothetical protein 171 1e-43
At5g45180 dimethylaniline monooxygenase (N-oxide-forming)-like p... 164 2e-41
At1g12200 unknown protein 71 2e-13
At1g65860 flavin-containing monooxygenase FMO3, putative 69 7e-13
At1g62540 unknown protein 67 3e-12
At1g63340 unknown protein 65 2e-11
At1g63370 flavin-binding monooxygenase, putative 64 2e-11
At1g62580 flavin-containing monooxygenase form 2 like protein 64 2e-11
At1g12140 unknown protein 64 2e-11
At1g62620 similar to flavin-binding monooxygenase (Z71258); simi... 64 4e-11
At1g62600 unknown protein 64 4e-11
At5g61290 unknown protein 62 9e-11
At1g12130 hypothetical protein 62 1e-10
At1g62560 similar to flavin-containing monooxygenase (sp|P36366)... 61 2e-10
At2g33230 putative flavin-containing monooxygenase 59 9e-10
At1g62570 similar to glutamate synthase 59 9e-10
At4g28720 unknown protein 58 2e-09
At1g04610 putative dimethylaniline monooxygenase 57 3e-09
At1g04180 putative dimethylaniline monooxygenase 55 1e-08
At5g43890 dimethylaniline monooxygenase-like 54 2e-08
>At1g19250 hypothetical protein
Length = 498
Score = 171 bits (433), Expect = 1e-43
Identities = 83/148 (56%), Positives = 110/148 (74%), Gaps = 13/148 (8%)
Query: 1 MIREHNTMFVSKIAIIGAGVSGIAAAKQLSHHNPIIFEASDSIGGVWRHCSYNSTKLQSH 60
M ++ + S++AIIGAGVSG+AAAK L HHNP +FEASDS+GGVWR C+Y +TKLQS
Sbjct: 1 MASNYDKLTSSRVAIIGAGVSGLAAAKNLVHHNPTVFEASDSVGGVWRSCTYETTKLQSA 60
Query: 61 RRDYEFTDFPW-HERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRFLGNRVP 119
R DYEF+DFPW + RD++ FP +LEIL YL SYA+HFD++K ++F SKV+E+RF+G
Sbjct: 61 RVDYEFSDFPWPNNRDDTTFPPYLEILDYLESYAKHFDLLKFMKFGSKVIEVRFIG---- 116
Query: 120 TEGERD-------FGSPLPGRPVWEVAV 140
+GE +G+ LPG+PVWE V
Sbjct: 117 -DGETPQMVDLGAYGNLLPGKPVWEFVV 143
>At5g45180 dimethylaniline monooxygenase (N-oxide-forming)-like
protein
Length = 453
Score = 164 bits (414), Expect = 2e-41
Identities = 79/138 (57%), Positives = 106/138 (76%), Gaps = 2/138 (1%)
Query: 11 SKIAIIGAGVSGIAAAKQLSHHNPIIFEASDSIGGVWRHCSYNSTKLQSHRRDYEFTDFP 70
S++AIIGAGVSG+AAAK L+ H+P +FEASDSIGGVWR C+Y +TKLQS R YE +DF
Sbjct: 5 SRVAIIGAGVSGLAAAKHLARHHPQVFEASDSIGGVWRKCTYETTKLQSVRVSYELSDFL 64
Query: 71 WHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRFLGN-RVPTEGERD-FGS 128
W R S FPT++++L YL +YA+HF+++K I+FNSKVVE+RF+G+ + G+ +G+
Sbjct: 65 WPNRGESSFPTYVDVLDYLEAYAKHFNLVKFIKFNSKVVELRFIGDGKTLQMGDLGAYGN 124
Query: 129 PLPGRPVWEVAVRDNHSD 146
LPG+PVWEVAV D
Sbjct: 125 LLPGKPVWEVAVNTGDGD 142
>At1g12200 unknown protein
Length = 465
Score = 70.9 bits (172), Expect = 2e-13
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 32/139 (23%)
Query: 13 IAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHCS------------------- 51
+A+IGAG +G+ AA++L H+ ++ E IGGVW + S
Sbjct: 14 VAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVHSS 73
Query: 52 -YNSTKLQSHRRDYEFTDFPW----HE--RDNSDFPTHLEILKYLHSYAQHFDVMKNIRF 104
Y S + R FTDFP+ H+ RD P H E+L YL +A+ FD+ + +RF
Sbjct: 74 LYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMVRF 133
Query: 105 NSKVVEIRFLGNRVPTEGE 123
++VV+ +V EGE
Sbjct: 134 ETEVVK----AEQVAAEGE 148
>At1g65860 flavin-containing monooxygenase FMO3, putative
Length = 459
Score = 69.3 bits (168), Expect = 7e-13
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 28/137 (20%)
Query: 1 MIREHNTMFVSKIAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHCS------- 51
M NT+ +A+IGAG +G+ A++L H ++F+ +GG+W + S
Sbjct: 1 MAPTQNTICSKHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPL 60
Query: 52 -------------YNSTKLQSHRRDYEFTDFPW----HE--RDNSDFPTHLEILKYLHSY 92
Y S + R FTDFP+ H+ RD+ +P+H E+L YL +
Sbjct: 61 SLDTTRTIVHTSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDF 120
Query: 93 AQHFDVMKNIRFNSKVV 109
A+ F + + +RF ++VV
Sbjct: 121 AREFKIEEMVRFETEVV 137
>At1g62540 unknown protein
Length = 457
Score = 67.4 bits (163), Expect = 3e-12
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 28/139 (20%)
Query: 1 MIREHNTMFVSKIAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHC-------- 50
M N + + +IGAG +G+ AA++LS H ++ E +GG+W +
Sbjct: 1 MAPAQNPISSQHVVVIGAGAAGLVAARELSREGHTVVVLEREKEVGGLWIYSPKAESDPL 60
Query: 51 SYNSTKLQSHRRDYE------------FTDFPW------HERDNSDFPTHLEILKYLHSY 92
S + T+ H YE FTDFP+ RD+ +P+H+E+L YL +
Sbjct: 61 SLDPTRSIVHSSVYESLRTNLPRECMGFTDFPFVPRFDDESRDSRRYPSHMEVLAYLQDF 120
Query: 93 AQHFDVMKNIRFNSKVVEI 111
A+ F++ + +RF +VV +
Sbjct: 121 AREFNLEEMVRFEIEVVRV 139
>At1g63340 unknown protein
Length = 398
Score = 64.7 bits (156), Expect = 2e-11
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 28/125 (22%)
Query: 13 IAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHCS------------------- 51
+A+IGAG +G+ AA++L H+ ++FE + IGGVW +
Sbjct: 14 VAVIGAGAAGLVAARELRREGHSVVVFERGNQIGGVWAYTPNVEPDPLSIDPTRPVIHSS 73
Query: 52 -YNSTKLQSHRRDYEFTDFPWH------ERDNSDFPTHLEILKYLHSYAQHFDVMKNIRF 104
Y+S + R FTDFP+ RD P H+E+L YL +A+ F + + IRF
Sbjct: 74 LYSSLRTIIPRECMGFTDFPFSTGPENKSRDPRRHPGHIEVLAYLKDFARKFKMDEMIRF 133
Query: 105 NSKVV 109
++VV
Sbjct: 134 ETEVV 138
>At1g63370 flavin-binding monooxygenase, putative
Length = 450
Score = 64.3 bits (155), Expect = 2e-11
Identities = 36/126 (28%), Positives = 62/126 (48%), Gaps = 27/126 (21%)
Query: 13 IAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHCS------------------- 51
+A+IGAG +G+ AA++L H+ ++FE +GG W +
Sbjct: 13 VAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSS 72
Query: 52 -YNSTKLQSHRRDYEFTDFPWH-----ERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFN 105
Y S ++ R + DFP+ RD FP+H E+L YL +A+ F + + +RF
Sbjct: 73 VYRSLRINGTRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAKEFGIEEMVRFE 132
Query: 106 SKVVEI 111
++VV++
Sbjct: 133 TEVVKV 138
>At1g62580 flavin-containing monooxygenase form 2 like protein
Length = 497
Score = 64.3 bits (155), Expect = 2e-11
Identities = 41/131 (31%), Positives = 63/131 (47%), Gaps = 28/131 (21%)
Query: 13 IAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHC--------SYNSTKLQSHRR 62
+A+IGAG +G+ AA++L H+ ++FE + IGGVW + S + T+ H
Sbjct: 14 VAVIGAGAAGLVAARELRREGHSVVVFERGNHIGGVWAYTPNVEPDPLSIDPTRPVIHSS 73
Query: 63 DYE------------FTDFPWH------ERDNSDFPTHLEILKYLHSYAQHFDVMKNIRF 104
Y FTDFP+ RD P H E+L YL + + F + + IRF
Sbjct: 74 LYSSLRTIIPQECMGFTDFPFSTRLENGSRDPRRHPGHSEVLAYLRDFVREFKIEEMIRF 133
Query: 105 NSKVVEIRFLG 115
++VV + G
Sbjct: 134 ETEVVRVEQAG 144
>At1g12140 unknown protein
Length = 444
Score = 64.3 bits (155), Expect = 2e-11
Identities = 35/126 (27%), Positives = 63/126 (49%), Gaps = 29/126 (23%)
Query: 13 IAIIGAGVSGIAAAKQL--SHHNPIIFEASDSIGGVWRHCS------------------- 51
+A+IGAG +G+ AA++L +H ++FE +GG+W +
Sbjct: 13 VAVIGAGAAGLVAARELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHSS 72
Query: 52 -YNSTKLQSHRRDYEFTDFPW-------HERDNSDFPTHLEILKYLHSYAQHFDVMKNIR 103
Y+S + R + DFP+ RD+ +P+H E+L YL +A+ F +++ +R
Sbjct: 73 VYDSLRTNLPRECMGYRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLVEMVR 132
Query: 104 FNSKVV 109
F ++VV
Sbjct: 133 FKTEVV 138
>At1g62620 similar to flavin-binding monooxygenase (Z71258); similar
to ESTs gb|R30018, gb|T23015, and gb|T88100
Length = 458
Score = 63.5 bits (153), Expect = 4e-11
Identities = 36/126 (28%), Positives = 62/126 (48%), Gaps = 27/126 (21%)
Query: 13 IAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHCS------------------- 51
+A+IGAG +G+ AA++L H+ ++FE +GG W +
Sbjct: 13 VAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSS 72
Query: 52 -YNSTKLQSHRRDYEFTDFPWH-----ERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFN 105
Y S ++ R + DFP+ RD FP+H E+L YL +A+ F + + +RF
Sbjct: 73 VYRSLRINGTRECTGYRDFPFVVRSGVSRDPRRFPSHGEVLAYLKDFAKEFGIEEMVRFE 132
Query: 106 SKVVEI 111
++VV++
Sbjct: 133 TEVVKV 138
>At1g62600 unknown protein
Length = 452
Score = 63.5 bits (153), Expect = 4e-11
Identities = 40/139 (28%), Positives = 65/139 (45%), Gaps = 35/139 (25%)
Query: 2 IREHNTMFVSKIAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHCS-------- 51
IR H+ +A+IGAG +G+ AA++L H+ ++FE +GG W +
Sbjct: 8 IRSHH------VAVIGAGAAGLVAARELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLS 61
Query: 52 ------------YNSTKLQSHRRDYEFTDFPW-------HERDNSDFPTHLEILKYLHSY 92
Y S + R + DFP+ RD FP+H E+L YL +
Sbjct: 62 VDPTRSVVHSSVYGSLRTNLPRECMGYRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDF 121
Query: 93 AQHFDVMKNIRFNSKVVEI 111
A+ F + + IRF++ VV++
Sbjct: 122 AKEFAIEEMIRFDTAVVKV 140
>At5g61290 unknown protein
Length = 461
Score = 62.4 bits (150), Expect = 9e-11
Identities = 42/128 (32%), Positives = 63/128 (48%), Gaps = 28/128 (21%)
Query: 13 IAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWR-------------------HCS 51
+ +IGAG SG+ +A++L H ++ E + +GG W H S
Sbjct: 16 VCVIGAGPSGLVSARELKKEGHKVVVMEQNHDVGGQWLYQPNVDEEDTLGKTKTLKVHSS 75
Query: 52 -YNSTKLQSHRRDYEFTDFPW---HERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSK 107
Y+S +L S R F+DFP+ RD+ FP H E+L YL + Q F + + IRFN
Sbjct: 76 VYSSLRLASPREVMGFSDFPFIAKEGRDSRRFPGHEELLLYLKDFCQVFGLREMIRFN-- 133
Query: 108 VVEIRFLG 115
V + F+G
Sbjct: 134 -VRVEFVG 140
>At1g12130 hypothetical protein
Length = 470
Score = 61.6 bits (148), Expect = 1e-10
Identities = 38/134 (28%), Positives = 63/134 (46%), Gaps = 28/134 (20%)
Query: 6 NTMFVSKIAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWR--------------- 48
N++ +A+IGAG +G+ AA++L H IFE +GG+W
Sbjct: 6 NSISSRNVAVIGAGAAGLVAARELRREGHTVTIFERQKQVGGLWVCTPNVEPDLLSIDPD 65
Query: 49 ----HCS-YNSTKLQSHRRDYEFTDFPW------HERDNSDFPTHLEILKYLHSYAQHFD 97
H S Y S + R ++DFP+ RD +P H E+++YL +A+ F
Sbjct: 66 RTVVHSSVYQSLRTNLPRECMGYSDFPFVTRPDDESRDPRRYPDHREVMRYLQDFAKEFK 125
Query: 98 VMKNIRFNSKVVEI 111
+ + IRF ++V +
Sbjct: 126 IEEMIRFETEVFRV 139
>At1g62560 similar to flavin-containing monooxygenase (sp|P36366);
similar to ESTs gb|R30018, gb|H36886, gb|N37822, and
gb|T88100
Length = 462
Score = 60.8 bits (146), Expect = 2e-10
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 28/144 (19%)
Query: 1 MIREHNTMFVSKIAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHC-------- 50
M N + +A+IGAG +G+ +++L H+ ++FE +GG+W +
Sbjct: 1 MAPAQNQITSKHVAVIGAGPAGLITSRELRREGHSVVVFEREKQVGGLWVYTPKSDSDPL 60
Query: 51 SYNSTKLQSHRRDYE------------FTDFPW------HERDNSDFPTHLEILKYLHSY 92
S + T+ + H YE DFP+ RD +P H E+L Y+ +
Sbjct: 61 SLDPTRSKVHSSIYESLRTNVPRESMGVRDFPFLPRFDDESRDARRYPNHREVLAYIQDF 120
Query: 93 AQHFDVMKNIRFNSKVVEIRFLGN 116
A+ F + + IRF ++VV + + N
Sbjct: 121 AREFKIEEMIRFETEVVRVEPVDN 144
>At2g33230 putative flavin-containing monooxygenase
Length = 431
Score = 58.9 bits (141), Expect = 9e-10
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 8 MFVSKIAIIGAGVSGIAAAKQLSHHNP--IIFEASDSIGGVWRHCSYNSTKLQSHRRDYE 65
++V+ I+GAG SG+A A L +I E ++ I +W++ +Y+ KL ++ +
Sbjct: 27 IWVNGPVIVGAGPSGLAVAADLKRQEVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQ 86
Query: 66 FTDFPWHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRF 113
+ P+ E D ++PT + ++YL SYA HFD+ +FN V ++
Sbjct: 87 LPNLPFPE-DIPEYPTKYQFIEYLESYATHFDLRP--KFNETVQSAKY 131
>At1g62570 similar to glutamate synthase
Length = 461
Score = 58.9 bits (141), Expect = 9e-10
Identities = 33/127 (25%), Positives = 60/127 (46%), Gaps = 28/127 (22%)
Query: 13 IAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGVWRHCS------------------- 51
+A+IGAG +G+ AA++L H ++ + +GG+W +
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVHSS 72
Query: 52 -YNSTKLQSHRRDYEFTDFPW------HERDNSDFPTHLEILKYLHSYAQHFDVMKNIRF 104
Y S + R + DFP+ RD+ +P+H E+L YL +A F++ + IRF
Sbjct: 73 VYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEEMIRF 132
Query: 105 NSKVVEI 111
++V+ +
Sbjct: 133 ETEVLRV 139
>At4g28720 unknown protein
Length = 426
Score = 58.2 bits (139), Expect = 2e-09
Identities = 35/114 (30%), Positives = 60/114 (51%), Gaps = 5/114 (4%)
Query: 2 IREHNTMFVSKIAIIGAGVSGIAAAKQLSHHNP--IIFEASDSIGGVWRHCSYNSTKLQS 59
+ + ++V+ I+GAG SG+A A L N ++ E +D I +W+ +Y+ KL
Sbjct: 14 LTNNRCIWVNGPVIVGAGPSGLATAACLHEQNVPFVVLERADCIASLWQKRTYDRLKLHL 73
Query: 60 HRRDYEFTDFPWHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRF 113
++ + P+ E D ++PT + + YL SYA F++ N +FN V RF
Sbjct: 74 PKQFCQLPKMPFPE-DFPEYPTKRQFIDYLESYATRFEI--NPKFNECVQTARF 124
>At1g04610 putative dimethylaniline monooxygenase
Length = 437
Score = 57.4 bits (137), Expect = 3e-09
Identities = 32/108 (29%), Positives = 62/108 (56%), Gaps = 5/108 (4%)
Query: 8 MFVSKIAIIGAGVSGIAAAKQLSHHNP--IIFEASDSIGGVWRHCSYNSTKLQSHRRDYE 65
++V+ I+GAG SG+A A L II E ++ I +W++ +Y+ KL ++ +
Sbjct: 32 IWVNGPVIVGAGPSGLAVAAGLKREGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQ 91
Query: 66 FTDFPWHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRF 113
++P+ + + ++PT + ++YL SYA +FD+ N +FN V ++
Sbjct: 92 LPNYPFPD-EFPEYPTKFQFIQYLESYAANFDI--NPKFNETVQSAKY 136
>At1g04180 putative dimethylaniline monooxygenase
Length = 421
Score = 55.5 bits (132), Expect = 1e-08
Identities = 34/112 (30%), Positives = 55/112 (48%), Gaps = 5/112 (4%)
Query: 4 EHNTMFVSKIAIIGAGVSGIAAAKQLSHHNP--IIFEASDSIGGVWRHCSYNSTKLQSHR 61
E ++V+ I+GAG SG+A A L ++ E SD I +W+ +Y+ KL +
Sbjct: 16 ERRCVWVNGPVIVGAGPSGLATAACLHDQGVPFVVVERSDCIASLWQKRTYDRLKLHLPK 75
Query: 62 RDYEFTDFPWHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRF 113
+ + P+ + ++PT + + YL SYA FD+ FN V RF
Sbjct: 76 KFCQLPKMPFPDH-YPEYPTKRQFIDYLESYANRFDIKP--EFNKSVESARF 124
>At5g43890 dimethylaniline monooxygenase-like
Length = 424
Score = 54.3 bits (129), Expect = 2e-08
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 8 MFVSKIAIIGAGVSGIAAAKQLSHHNP--IIFEASDSIGGVWRHCSYNSTKLQSHRRDYE 65
++V+ I+GAG SG+A A L ++ E +D I +W+ +Y+ KL ++ +
Sbjct: 20 IWVNGPVIVGAGPSGLATAACLREEGVPFVVLERADCIASLWQKRTYDRIKLHLPKKVCQ 79
Query: 66 FTDFPWHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRFLGN----RVPTE 121
P+ E D ++PT + ++YL SYA F++ +FN V R+ R+ T
Sbjct: 80 LPKMPFPE-DYPEYPTKRQFIEYLESYANKFEITP--QFNECVQSARYDETSGLWRIKTT 136
Query: 122 GERDFGSPLPGRPVWEVAVRDNHSDTI 148
GS + W V +++ +
Sbjct: 137 SSSSSGSEMEYICRWLVVATGENAEKV 163
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,474,031
Number of Sequences: 26719
Number of extensions: 139851
Number of successful extensions: 481
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 77
length of query: 148
length of database: 11,318,596
effective HSP length: 90
effective length of query: 58
effective length of database: 8,913,886
effective search space: 517005388
effective search space used: 517005388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0264.1