BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.10
         (145 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g17590 unknown protein                                             235  5e-63
At4g17600 Lil3 protein (Lil3:1)                                        30  0.58
At4g16420 transcriptional adaptor like protein                         29  0.76
At3g43070 putative protein                                             28  1.3
At1g80290 unknown protein                                              28  1.3
At1g02560 ATP-dependent clp protease proteolytic subunit (nClpP1)      28  1.3
At5g23340 unknown protein                                              27  3.8
At1g20760 unknown protein                                              27  3.8
At3g54670 structural maintenance of chromosomes (SMC) - like pro...    26  6.5
At2g39990 26S proteasome regulatory subunit                            26  6.5

>At3g17590 unknown protein
          Length = 240

 Score =  235 bits (600), Expect = 5e-63
 Identities = 112/145 (77%), Positives = 127/145 (87%)

Query: 1   MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
           MK   S  ++ PVKFRMPTAENLVPIRLDI+ + +RYKDAFTWNPSDPD+EV +FA+RTV
Sbjct: 1   MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60

Query: 61  KDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDL 120
           KDLKLP  FVTQIAQSI+SQL++FR+YEGQDMY GEKIIPIKLDL VNH L+KDQFLWDL
Sbjct: 61  KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNFESDLEELARIFCKDMGIEDPEV 145
           NNFESD EE AR  CKD+G+EDPEV
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEV 145


>At4g17600 Lil3 protein (Lil3:1)
          Length = 262

 Score = 29.6 bits (65), Expect = 0.58
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 46  SDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDL 105
           + P   V V A   V+ +   PP  T   +  E+  A+  + EG++M   E ++  +   
Sbjct: 47  TSPTAAVSVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDAR 106

Query: 106 CVNHMLVKDQFLWDLNNFESD 126
            +N         WDL  FE D
Sbjct: 107 WING-------TWDLKQFEKD 120


>At4g16420 transcriptional adaptor like protein
          Length = 487

 Score = 29.3 bits (64), Expect = 0.76
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 57  RRTVKDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVK 113
           +R   ++KL PP   Q+ Q +  ++ +    +  D Y+  KI P K+D  V  MLVK
Sbjct: 426 KRLCSEVKLVPPVYLQMQQVMSHEIFKGNVTKKSDAYSLFKIDPTKVDR-VYDMLVK 481


>At3g43070 putative protein
          Length = 426

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 15  FRMP--TAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQ 72
           F MP   A  +V +  +  +D  +      W  S PD +  VF+  T+  ++L P F+  
Sbjct: 60  FHMPDHVAAKIVSLVFEDGVDMLK-----AWIQSGPDGKAAVFSSETLSSVRLAPFFIHM 114

Query: 73  IAQSIESQLAEFRSYEGQDMYA 94
             +S    +   +    ++ YA
Sbjct: 115 AEESSSYHMFYTKCLTAENPYA 136


>At1g80290 unknown protein
          Length = 329

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 15/36 (41%), Positives = 21/36 (57%)

Query: 29  DIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLK 64
           D+EID +  + AF+   S+PD  VG F R    DL+
Sbjct: 141 DVEIDQRSLEFAFSVWKSNPDRLVGTFVRSHGFDLQ 176


>At1g02560 ATP-dependent clp protease proteolytic subunit (nClpP1)
          Length = 298

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 21/83 (25%), Positives = 35/83 (41%), Gaps = 19/83 (22%)

Query: 3   TPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKD 62
           TP +V+  N     +P+ + +  IR D+++ +  Y  A+                     
Sbjct: 60  TPKAVYSGNLWTPEIPSPQGVWSIRDDLQVPSSPYFPAYAQGQG---------------- 103

Query: 63  LKLPPPFVTQIAQSIESQLAEFR 85
              PPP V +  QSI SQL ++R
Sbjct: 104 ---PPPMVQERFQSIISQLFQYR 123


>At5g23340 unknown protein
          Length = 405

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 105 LCVNHMLVKDQFLWDLNNFESDLE-ELARIFCK 136
           +CVN  L  D+  W L+  +SD + E+  + CK
Sbjct: 4   VCVNEALTDDELRWVLSRLDSDKDKEVFGLVCK 36


>At1g20760 unknown protein
          Length = 1019

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 20/75 (26%), Positives = 34/75 (44%), Gaps = 8/75 (10%)

Query: 70  VTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEE 129
           V +I   +  + A FR  EG+ M   + I+ ++     + +L         +  +SDLEE
Sbjct: 604 VAEIGSKLTIEEARFREIEGRKMELSQAIVNMEQGGSADGLLQV-----RADRIQSDLEE 658

Query: 130 LARIF---CKDMGIE 141
           L +     CK  G+E
Sbjct: 659 LMKALTERCKKHGLE 673


>At3g54670 structural maintenance of chromosomes (SMC) - like
           protein
          Length = 1265

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 111 LVKDQFLWDLNNFESDLEE 129
           L +++FLW L N E+D+E+
Sbjct: 229 LKRERFLWQLYNIENDIEK 247


>At2g39990 26S proteasome regulatory subunit
          Length = 293

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 2/51 (3%)

Query: 33  DAKRYKDAFTWNPSDPDHEVGVFARRTVKDL-KLPPP-FVTQIAQSIESQL 81
           D  +Y D+       PD+ +G F    V  L KLPP  F   +  S++ QL
Sbjct: 217 DVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKLPPQVFDNLVNDSLQDQL 267


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,484,129
Number of Sequences: 26719
Number of extensions: 140485
Number of successful extensions: 293
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 10
length of query: 145
length of database: 11,318,596
effective HSP length: 90
effective length of query: 55
effective length of database: 8,913,886
effective search space: 490263730
effective search space used: 490263730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)