BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252b.2
(515 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61030 RNA-binding protein - like 52 1e-06
At5g19030 unknown protein 48 1e-05
At3g26420 RNA-binding protein, putative 48 1e-05
At1g34140 putative protein 48 1e-05
At1g11650 putative DNA binding protein 48 1e-05
At4g27000 putative DNA binding protein 48 1e-05
At5g54900 unknown protein 47 3e-05
At4g13850 glycine-rich RNA-binding protein AtGRP2 - like 47 3e-05
At3g46020 RNA binding protein -like 46 4e-05
At3g23830 glycine-rich RNA binding protein, putative 45 7e-05
At3g16380 putative poly(A) binding protein 45 7e-05
At2g35410 putative chloroplast RNA binding protein precursor 45 7e-05
At1g01080 ribonucleoprotein, putative 45 7e-05
At5g64200 unknown protein 45 1e-04
At5g54580 unknown protein 45 1e-04
At3g20930 unknown protein 45 1e-04
At1g71770 polyadenylate-binding protein 5 45 1e-04
At5g50250 RNA-binding protein-like 44 2e-04
At4g39260 glycine-rich protein (clone AtGRP8) 43 4e-04
At2g21660 glycine-rich RNA binding protein 43 4e-04
>At5g61030 RNA-binding protein - like
Length = 309
Score = 51.6 bits (122), Expect = 1e-06
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
LF+ G+A S+ +R F ++G +V+ V ++ GR FGFV FTS + A+ AI++L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 106 DGVRLGGASLSVGLA 120
DG L G + V A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>At5g19030 unknown protein
Length = 172
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/94 (26%), Positives = 52/94 (54%)
Query: 29 GSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFG 88
G ++ S + SLFV G ++SVS +++ +F++FG++ NV + ++ + +G
Sbjct: 62 GDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYG 121
Query: 89 FVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKP 122
+V F S + A A+++++G G + V +P
Sbjct: 122 YVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQP 155
>At3g26420 RNA-binding protein, putative
Length = 245
Score = 48.1 bits (113), Expect = 1e-05
Identities = 28/85 (32%), Positives = 44/85 (50%)
Query: 47 FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
F+ G+A + S +R F ++G LV V K GR FGF+ F K AI +++
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 107 GVRLGGASLSVGLAKPPQKVVSRSD 131
G+ L G +++V A+P Q R +
Sbjct: 70 GMDLDGRTITVDKAQPHQGGAGRDN 94
>At1g34140 putative protein
Length = 398
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/82 (31%), Positives = 46/82 (55%), Gaps = 1/82 (1%)
Query: 40 SRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAA 99
SRV +++V + E+ + ++ LF +FG + + V + + G+ RFGFV F + A
Sbjct: 115 SRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAV 173
Query: 100 VAIKSLDGVRLGGASLSVGLAK 121
AI+ ++GV + L VG A+
Sbjct: 174 TAIEKMNGVVVDEKELHVGRAQ 195
Score = 31.2 bits (69), Expect = 1.4
Identities = 20/82 (24%), Positives = 42/82 (50%), Gaps = 10/82 (12%)
Query: 40 SRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAA 99
+R ++L+V + +SV ++ LF++FG + + GFV F++ + A+
Sbjct: 219 TRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC----------NKGVGFVEFSTSEEAS 268
Query: 100 VAIKSLDGVRLGGASLSVGLAK 121
A+ ++G +G + V LA+
Sbjct: 269 KAMLKMNGKMVGNKPIYVSLAQ 290
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/63 (31%), Positives = 33/63 (51%), Gaps = 5/63 (7%)
Query: 32 PNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVR 91
P+ + SG V FV + ES+ Q+ +F+ FG++++ V R G +GFV+
Sbjct: 23 PSNRMSGRGNV----FVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS-GVSKGYGFVQ 77
Query: 92 FTS 94
F S
Sbjct: 78 FYS 80
>At1g11650 putative DNA binding protein
Length = 405
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/79 (31%), Positives = 47/79 (58%), Gaps = 6/79 (7%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
++FV G+ SV+ ++ +F+Q+G +V+V + K R GFV+F+ A A++
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK------RCGFVQFSEKSCAEEALRM 315
Query: 105 LDGVRLGGASLSVGLAKPP 123
L+GV+LGG ++ + + P
Sbjct: 316 LNGVQLGGTTVRLSWGRSP 334
Score = 31.2 bits (69), Expect = 1.4
Identities = 21/67 (31%), Positives = 31/67 (45%), Gaps = 10/67 (14%)
Query: 62 GLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGV----------RLG 111
G FA G +V+ V R K+ G+ +GF+ F S A +++ + RL
Sbjct: 80 GCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLN 139
Query: 112 GASLSVG 118
ASLS G
Sbjct: 140 WASLSSG 146
>At4g27000 putative DNA binding protein
Length = 415
Score = 47.8 bits (112), Expect = 1e-05
Identities = 26/87 (29%), Positives = 47/87 (53%), Gaps = 6/87 (6%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
++FV + +SV+ ++ +F QFG LV+V + K R GFV++ + A A+
Sbjct: 279 TIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK------RCGFVQYANRACAEQALSV 332
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSD 131
L+G +LGG S+ + + P ++ D
Sbjct: 333 LNGTQLGGQSIRLSWGRSPSNKQTQPD 359
>At5g54900 unknown protein
Length = 387
Score = 46.6 bits (109), Expect = 3e-05
Identities = 25/81 (30%), Positives = 46/81 (55%), Gaps = 6/81 (7%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
++FV G+ +V+ +++ +F QFG L++V + K R GFV++ + A A+
Sbjct: 261 TIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK------RCGFVQYANKASAEHALSV 314
Query: 105 LDGVRLGGASLSVGLAKPPQK 125
L+G +LGG S+ + + P K
Sbjct: 315 LNGTQLGGQSIRLSWGRSPNK 335
Score = 34.7 bits (78), Expect = 0.13
Identities = 18/63 (28%), Positives = 33/63 (51%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
SL++ + + + + I +FAQ G + V R K G+ +GF+ F S VA +++
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 105 LDG 107
+G
Sbjct: 121 YNG 123
>At4g13850 glycine-rich RNA-binding protein AtGRP2 - like
Length = 158
Score = 46.6 bits (109), Expect = 3e-05
Identities = 30/94 (31%), Positives = 43/94 (44%), Gaps = 1/94 (1%)
Query: 28 DGSTPNQKCSGVSRVC-VSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFR 86
+G+ P G R+ LF+ G++ +R FA FG +V+ V ++ GR
Sbjct: 18 NGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRG 77
Query: 87 FGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLA 120
FGFV F A AI +DG L G + V A
Sbjct: 78 FGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At3g46020 RNA binding protein -like
Length = 102
Score = 46.2 bits (108), Expect = 4e-05
Identities = 28/86 (32%), Positives = 45/86 (51%)
Query: 41 RVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAV 100
R+ LFV ++ + +R LF+ FG++ + R + R FGF+ F S A
Sbjct: 4 RISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARK 63
Query: 101 AIKSLDGVRLGGASLSVGLAKPPQKV 126
A+KSLDG + G + V +AK ++V
Sbjct: 64 ALKSLDGKIVDGRLIFVEVAKNAEEV 89
>At3g23830 glycine-rich RNA binding protein, putative
Length = 136
Score = 45.4 bits (106), Expect = 7e-05
Identities = 26/75 (34%), Positives = 36/75 (47%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
LFV G++ ++ F FG + V ++ GR FGFV F+ A AIK +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 106 DGVRLGGASLSVGLA 120
DG L G + V LA
Sbjct: 97 DGKELNGRQIRVNLA 111
>At3g16380 putative poly(A) binding protein
Length = 537
Score = 45.4 bits (106), Expect = 7e-05
Identities = 28/76 (36%), Positives = 46/76 (59%), Gaps = 1/76 (1%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+++V + E+V+ + LF+Q+G + +V V R +GR FGFV F + + A A++S
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMES 261
Query: 105 LDGVRLGGASLSVGLA 120
L G++LG L VG A
Sbjct: 262 LCGLQLGSKKLFVGKA 277
Score = 37.7 bits (86), Expect = 0.015
Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L+V ++ES++ ++R +F +G++V+ V + GR FGFV F++ + + A +
Sbjct: 305 NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRY 363
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSR 129
L+G + G + V +A+ + + R
Sbjct: 364 LNGFLVDGKPIVVRVAERKEDRIKR 388
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L+V + S++ + +F FG +++ V + G+ FGFV+F + + A A +
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSA 170
Query: 105 LDGVRLGGASLSV 117
L G + G L V
Sbjct: 171 LHGSMVYGKKLFV 183
>At2g35410 putative chloroplast RNA binding protein precursor
Length = 308
Score = 45.4 bits (106), Expect = 7e-05
Identities = 34/110 (30%), Positives = 53/110 (47%), Gaps = 1/110 (0%)
Query: 21 DEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKK 80
+ +ADEE + + S + LFV + S+S + I LF Q G + NV + R+K
Sbjct: 72 ETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD 131
Query: 81 LGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRS 130
G+ F FV S + A AI D ++ G +SV A+ +K +S
Sbjct: 132 -GKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKS 180
>At1g01080 ribonucleoprotein, putative
Length = 293
Score = 45.4 bits (106), Expect = 7e-05
Identities = 37/111 (33%), Positives = 50/111 (44%), Gaps = 11/111 (9%)
Query: 17 VDVGDEAADEE--DGSTPNQKCSGVS--------RVCVSLFVDGIAESVSYHQIRGLFAQ 66
+ V DE +EE G K S VS R C L+V I S Q+ +F
Sbjct: 72 LSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPC-ELYVCNIPRSYDIAQLLDMFQP 130
Query: 67 FGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSV 117
FG +++V V R + G G+V S A +AI SLDG +GG + V
Sbjct: 131 FGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181
Score = 32.0 bits (71), Expect = 0.84
Identities = 19/58 (32%), Positives = 31/58 (52%), Gaps = 1/58 (1%)
Query: 60 IRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSV 117
+R F++FG +V+ V +K GR F F+ FTS + A+ S +G + G + V
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIV 284
>At5g64200 unknown protein
Length = 303
Score = 44.7 bits (104), Expect = 1e-04
Identities = 26/77 (33%), Positives = 42/77 (53%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
SL V I + + LFA++G++V+VF+ R ++ G F FVR+ A A++
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 105 LDGVRLGGASLSVGLAK 121
LDG + G ++V AK
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g54580 unknown protein
Length = 156
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/81 (30%), Positives = 43/81 (52%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+LFV G+++ + +R FAQFG + + V + G FGFVR+ + + +A I
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 105 LDGVRLGGASLSVGLAKPPQK 125
+DG L G + A+P ++
Sbjct: 117 MDGKFLDGWVIFAEYARPREQ 137
>At3g20930 unknown protein
Length = 374
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/104 (26%), Positives = 49/104 (46%), Gaps = 7/104 (6%)
Query: 18 DVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQR 77
D ++ D++D +P K LF+ G++ S +R F FG LV V +
Sbjct: 263 DSTQDSRDQDDSESPPVKTK-------KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIM 315
Query: 78 KKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAK 121
K R + F+ +T+ + A A+K ++G + G + V +AK
Sbjct: 316 DKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAK 359
>At1g71770 polyadenylate-binding protein 5
Length = 668
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/85 (29%), Positives = 47/85 (54%), Gaps = 1/85 (1%)
Query: 37 SGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWK 96
SG +++V + + ++ +++ F ++G + + V K + G FGFV F S +
Sbjct: 218 SGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVM-KDQSGNSRSFGFVNFVSPE 276
Query: 97 VAAVAIKSLDGVRLGGASLSVGLAK 121
AAVA++ ++G+ LG L VG A+
Sbjct: 277 AAAVAVEKMNGISLGEDVLYVGRAQ 301
Score = 34.3 bits (77), Expect = 0.17
Identities = 24/87 (27%), Positives = 41/87 (46%), Gaps = 5/87 (5%)
Query: 32 PNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVR 91
P+ + SG V F+ + S+ + F+ FG +++ V +GR +GFV+
Sbjct: 124 PSTRLSGKGNV----FIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQ 178
Query: 92 FTSWKVAAVAIKSLDGVRLGGASLSVG 118
F + A AI L+G+ L + VG
Sbjct: 179 FEKEETAQAAIDKLNGMLLNDKQVFVG 205
>At5g50250 RNA-binding protein-like
Length = 289
Score = 43.9 bits (102), Expect = 2e-04
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 29 GSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFG 88
GS P ++ V ++V + V ++ LF++ G++V+ V ++ GR FG
Sbjct: 193 GSRPERQ-PRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFG 251
Query: 89 FVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAK 121
FV+ ++ VAI +LDG L G ++ V +A+
Sbjct: 252 FVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
>At4g39260 glycine-rich protein (clone AtGRP8)
Length = 169
Score = 43.1 bits (100), Expect = 4e-04
Identities = 25/83 (30%), Positives = 44/83 (52%)
Query: 39 VSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVA 98
+S V FV G+A + + ++ F+QFG +++ + ++ GR FGFV F K
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 99 AVAIKSLDGVRLGGASLSVGLAK 121
AI+ ++G L G ++V A+
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQ 83
>At2g21660 glycine-rich RNA binding protein
Length = 176
Score = 43.1 bits (100), Expect = 4e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 47 FVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLD 106
FV G+A + + FAQ+G +++ + ++ GR FGFV F K AI+ ++
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 107 GVRLGGASLSVGLAK 121
G L G S++V A+
Sbjct: 71 GQDLDGRSITVNEAQ 85
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,495,033
Number of Sequences: 26719
Number of extensions: 573181
Number of successful extensions: 1498
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 192
length of query: 515
length of database: 11,318,596
effective HSP length: 104
effective length of query: 411
effective length of database: 8,539,820
effective search space: 3509866020
effective search space used: 3509866020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0252b.2