BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252a.4
(153 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34760 unknown protein 164 2e-41
At1g30590 unknown protein 152 7e-38
At2g39240 unknown protein 117 2e-27
At5g27650 putative protein 29 1.1
At3g29000 unknown protein 29 1.1
At5g41840 putative protein 28 1.9
At4g11810 putative protein 27 4.3
At5g61490 putative protein 27 5.7
At5g11430 putative protein 27 5.7
At4g31625 unknown protein 27 5.7
At3g28110 hypothetical protein 27 5.7
At3g22970 unknown protein 27 5.7
At2g19710 hypothetical protein 27 5.7
At5g57685 putative protein 26 7.4
At3g13782 nucleosome assembly protein, putative 26 7.4
At3g01810 unknown protein 26 7.4
At1g55390 hypothetical protein 26 7.4
At5g64530 unknown protein 26 9.7
At2g11910 unknown protein 26 9.7
At1g13160 unknown protein 26 9.7
>At2g34760 unknown protein
Length = 613
Score = 164 bits (415), Expect = 2e-41
Identities = 81/131 (61%), Positives = 104/131 (78%), Gaps = 4/131 (3%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
AIMYVLCFRMRS++D+PR + QL P+E I HKL+PL VCLP+VV EFLRQAK LF
Sbjct: 431 AIMYVLCFRMRSILDVPRFRSQLT--PLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLF 488
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+ S ++F+F+DLLES+ LSR+FGG +RLD FFPFDPCL K S S+I P+F+ WS V+ TY
Sbjct: 489 IVS-DSFIFDDLLESE-LSRAFGGFERLDTFFPFDPCLLKSSNSFISPNFIYWSMVKATY 546
Query: 121 DSDDDEDGSEM 131
D DDD++ +E+
Sbjct: 547 DEDDDDNDAEV 557
>At1g30590 unknown protein
Length = 604
Score = 152 bits (384), Expect = 7e-38
Identities = 79/127 (62%), Positives = 98/127 (76%), Gaps = 4/127 (3%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
AI+YVLCFRMRS+V+IPR + Q ++ E I HKL+PL VCLP+VV EFL+QAKA LF
Sbjct: 418 AILYVLCFRMRSIVEIPRFQSQFRSL--ESILSHKLNPLLVCLPSVVSEFLKQAKAGGLF 475
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+ S E+F+F+DL ES+ LSR+FGG +RLD FFPFDPCL K S SYI P+F WS V+TTY
Sbjct: 476 IVS-ESFIFDDLHESE-LSRAFGGFERLDTFFPFDPCLLKMSSSYISPNFNFWSMVKTTY 533
Query: 121 DSDDDED 127
D DE+
Sbjct: 534 GEDGDEE 540
>At2g39240 unknown protein
Length = 545
Score = 117 bits (294), Expect = 2e-27
Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 16/140 (11%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
AI+YVLCFRMRS++++P + QL P+E + HKL PL+VCL +VV EFL QAKA LF
Sbjct: 375 AILYVLCFRMRSILEVPHFQSQLT--PLESVLSHKLDPLRVCLSSVVSEFLIQAKACGLF 432
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+ S+ F+F+DL ES +LSR+ GG FFPF P L +KS S I PHF++ S V+ TY
Sbjct: 433 I-VSDAFIFDDLSES-ELSRALGG------FFPF-PWLLEKSNSLISPHFIKRSEVKKTY 483
Query: 121 DSDD-----DEDGSEMSHDD 135
+ + D D E S DD
Sbjct: 484 EQAEVTVYGDTDNEEDSDDD 503
>At5g27650 putative protein
Length = 1063
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
Query: 81 SFGGIDRLDMFFPFDPCLSKKSESYIRPHFVR 112
S+G D ++ PF+P L +KS+ + HFVR
Sbjct: 210 SYGWFDPAELI-PFEPNLEEKSQQTVSKHFVR 240
>At3g29000 unknown protein
Length = 194
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 121 DSDDDEDGSEMSHDDFVDRNAKELDMMVSVQGL 153
D DDD+D + DD +D + +E +M++ GL
Sbjct: 65 DDDDDDDDDDDDDDDDIDISREEAEMVMRSLGL 97
>At5g41840 putative protein
Length = 540
Score = 28.1 bits (61), Expect = 1.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 123 DDDEDGSEMSHDDFVDRNAKELD 145
D++EDG ++ HDD+ D +A D
Sbjct: 440 DENEDGLDVDHDDYDDEDAVSCD 462
>At4g11810 putative protein
Length = 707
Score = 26.9 bits (58), Expect = 4.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 118 TTYDSDDDEDGSEMSHDD 135
T +D +DD DGSE S DD
Sbjct: 483 TEHDEEDDGDGSEESSDD 500
>At5g61490 putative protein
Length = 260
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 121 DSDDDEDGSEMSHDDFVD 138
D DD+E G ++S +FVD
Sbjct: 93 DDDDEESGDQLSESEFVD 110
>At5g11430 putative protein
Length = 871
Score = 26.6 bits (57), Expect = 5.7
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 101 KSESYIRPHFVRWSRVRTTYDSDDDED 127
KS +R ++ + +TYD DDDED
Sbjct: 787 KSLDQVRKLIHKYGKSASTYDDDDDED 813
>At4g31625 unknown protein
Length = 492
Score = 26.6 bits (57), Expect = 5.7
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 7/48 (14%)
Query: 98 LSKKSESYIRPHFVRWSRVRTT-----YDSDDDEDGSEMSHDDFVDRN 140
L K ++ P +S++RT+ YDSDDD+D E DD +N
Sbjct: 90 LDVKMVFHVTPSGRSFSQIRTSSSSGDYDSDDDDD--EAGDDDSDSKN 135
>At3g28110 hypothetical protein
Length = 354
Score = 26.6 bits (57), Expect = 5.7
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 120 YDSDDDEDGSEMS-HDDFVDRNAKELDMMVSVQG 152
Y+ +D+E+ +M HDD D ++E+ + +V G
Sbjct: 150 YEDEDNEEDEDMDVHDDDTDGESREITLDPTVDG 183
>At3g22970 unknown protein
Length = 370
Score = 26.6 bits (57), Expect = 5.7
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 35 KLSPLKVCLPTVVEEFLRQ--AKAAQLFMSSSETFVFNDLLESDDLSRSFGG-IDRLD 89
+ P VCL +V+ F+ + K A+ + F N+ SDD S FGG ID D
Sbjct: 72 EFEPSSVCLAKMVQNFIEENNEKQAKCGRNRCNCFNGNNDGSSDDESDLFGGSIDGCD 129
>At2g19710 hypothetical protein
Length = 918
Score = 26.6 bits (57), Expect = 5.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
MSS+ + + ++ DD FG R D++ K S + RP F+ +
Sbjct: 689 MSSASSKAEKEYIQIDD----FGQSSRKDLYS------KKASNTETRPSFM------PPH 732
Query: 121 DSDDDEDGSEMSH 133
S DED S+M H
Sbjct: 733 PSSSDEDDSDMQH 745
>At5g57685 putative protein
Length = 157
Score = 26.2 bits (56), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 106 IRPHFVRWSRVRT-TYDSDDDEDGSEMSHDDFVDRNAK 142
++P ++ V+T T D DDDED D V R+++
Sbjct: 105 VKPTYLATPSVKTCTCDDDDDEDDDVEGSDQVVPRSSE 142
>At3g13782 nucleosome assembly protein, putative
Length = 329
Score = 26.2 bits (56), Expect = 7.4
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 14/68 (20%)
Query: 85 IDRLDMFFPFDPCLSKKSESYIR--------------PHFVRWSRVRTTYDSDDDEDGSE 130
ID +D + FD ++++ ++ + PH V W D DD +D +
Sbjct: 262 IDEVDDYDDFDTIMTEELQNLMDQDYDIAVTIRDKLIPHAVSWFTGEALVDEDDSDDNDD 321
Query: 131 MSHDDFVD 138
+D+ D
Sbjct: 322 DDNDEKSD 329
>At3g01810 unknown protein
Length = 921
Score = 26.2 bits (56), Expect = 7.4
Identities = 11/41 (26%), Positives = 21/41 (50%)
Query: 113 WSRVRTTYDSDDDEDGSEMSHDDFVDRNAKELDMMVSVQGL 153
WSR T DDED + +V+++ K +++ ++ L
Sbjct: 724 WSRWLTDLFGIDDEDDDSSDENSYVEKSFKTFNLLKALSDL 764
>At1g55390 hypothetical protein
Length = 684
Score = 26.2 bits (56), Expect = 7.4
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 117 RTTYDSDDDEDGSEMSHDDFVDRNAKELDMMVS 149
R+ ++DDD+D + HDD D N + D++V+
Sbjct: 111 RSINETDDDDDSEDGGHDD-EDNNFVDDDVIVN 142
>At5g64530 unknown protein
Length = 187
Score = 25.8 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 99 SKKSESYIRPHFVRWSRVRT---TYDSDDDEDGSEMSHDDFVDRNAKELD 145
S+ S S +P + +W R ++D+DG+E+S D V + +LD
Sbjct: 133 SRASSSSHKPDYSKWVICRVYEQNCSEEEDDDGTELSCLDEVFLSLDDLD 182
>At2g11910 unknown protein
Length = 168
Score = 25.8 bits (55), Expect = 9.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 106 IRPHFVRWSRV---RTTYDSDDDEDGSEMSHDDFVDRNAKELD 145
++ + R SR+ + DSDDD+D + DD + +A + D
Sbjct: 56 VKEGYKRGSRIEENKDASDSDDDDDDEDADEDDDDEDDANDED 98
>At1g13160 unknown protein
Length = 804
Score = 25.8 bits (55), Expect = 9.7
Identities = 11/29 (37%), Positives = 19/29 (64%), Gaps = 2/29 (6%)
Query: 120 YDSDDDEDGSEMSHDDFVDRNAKELDMMV 148
Y++ DD+D S+ DD D +K++D +V
Sbjct: 248 YENIDDDDDSDAESDD--DEESKKIDQVV 274
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,442,636
Number of Sequences: 26719
Number of extensions: 138447
Number of successful extensions: 897
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 27
length of query: 153
length of database: 11,318,596
effective HSP length: 90
effective length of query: 63
effective length of database: 8,913,886
effective search space: 561574818
effective search space used: 561574818
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0252a.4